Query 017204
Match_columns 375
No_of_seqs 356 out of 2526
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 8.8E-80 1.9E-84 600.5 28.0 318 1-322 93-412 (413)
2 KOG0651 26S proteasome regulat 100.0 1.1E-54 2.3E-59 411.6 12.5 274 1-319 107-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 3.4E-48 7.3E-53 373.9 15.5 179 53-245 179-363 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 2.2E-46 4.8E-51 379.1 17.9 264 24-317 509-788 (802)
5 KOG0730 AAA+-type ATPase [Post 100.0 4.2E-44 9.1E-49 366.5 19.0 222 19-260 427-655 (693)
6 KOG0736 Peroxisome assembly fa 100.0 3.5E-44 7.5E-49 370.5 18.1 270 24-317 670-951 (953)
7 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-43 3.7E-48 353.4 11.2 291 53-365 250-583 (744)
8 KOG0734 AAA+-type ATPase conta 100.0 1.4E-42 3E-47 347.2 12.1 252 53-324 331-593 (752)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-41 8.9E-46 340.9 17.5 206 41-263 204-417 (802)
10 KOG0738 AAA+-type ATPase [Post 100.0 5.9E-39 1.3E-43 311.8 16.2 231 22-270 208-445 (491)
11 KOG0735 AAA+-type ATPase [Post 100.0 5.2E-39 1.1E-43 329.8 16.4 200 53-272 695-900 (952)
12 KOG0731 AAA+-type ATPase conta 100.0 1E-38 2.2E-43 335.0 13.7 207 23-247 308-526 (774)
13 COG0465 HflB ATP-dependent Zn 100.0 5.5E-38 1.2E-42 324.3 15.0 257 54-324 178-442 (596)
14 KOG0727 26S proteasome regulat 100.0 8.6E-37 1.9E-41 283.2 14.1 180 52-245 182-367 (408)
15 KOG0739 AAA+-type ATPase [Post 100.0 3.8E-37 8.1E-42 290.9 10.2 214 12-245 121-341 (439)
16 KOG0728 26S proteasome regulat 100.0 1.9E-36 4.2E-41 280.6 13.7 180 52-245 174-359 (404)
17 KOG0729 26S proteasome regulat 100.0 2.2E-36 4.8E-41 282.3 13.2 179 53-245 205-389 (435)
18 KOG0726 26S proteasome regulat 100.0 2.3E-36 4.9E-41 284.9 12.3 180 53-246 213-398 (440)
19 KOG0652 26S proteasome regulat 100.0 2.1E-36 4.6E-41 281.7 11.0 179 52-244 198-382 (424)
20 COG0464 SpoVK ATPases of the A 100.0 4.1E-35 8.8E-40 302.9 20.4 206 24-246 240-454 (494)
21 TIGR03689 pup_AAA proteasome A 100.0 2.2E-34 4.8E-39 295.8 22.5 283 23-322 179-499 (512)
22 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-34 4.5E-39 310.5 22.7 224 52-301 480-710 (733)
23 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-34 3E-39 280.8 17.2 263 19-301 85-359 (386)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 2.3E-34 5E-39 295.5 18.2 174 54-245 254-435 (489)
25 PTZ00454 26S protease regulato 100.0 2.7E-33 5.8E-38 281.7 20.4 209 23-245 142-357 (398)
26 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-33 3E-38 314.0 16.0 174 53-246 1624-1849(2281)
27 TIGR01241 FtsH_fam ATP-depende 100.0 3.3E-33 7.2E-38 288.9 15.3 208 21-246 50-267 (495)
28 PRK03992 proteasome-activating 100.0 6.8E-33 1.5E-37 278.6 16.8 209 24-246 129-344 (389)
29 CHL00176 ftsH cell division pr 100.0 1.3E-32 2.7E-37 290.5 15.3 180 53-246 210-395 (638)
30 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-32 4.8E-37 254.6 14.4 181 46-244 135-324 (368)
31 PTZ00361 26 proteosome regulat 100.0 1.1E-31 2.4E-36 272.2 15.4 181 52-246 210-396 (438)
32 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-31 5E-36 273.1 16.5 240 53-320 212-463 (693)
33 PRK10733 hflB ATP-dependent me 100.0 1E-30 2.2E-35 277.7 16.4 178 53-246 179-364 (644)
34 KOG0740 AAA+-type ATPase [Post 100.0 2.6E-31 5.6E-36 265.3 10.9 211 18-245 145-362 (428)
35 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-30 4E-35 258.7 14.8 181 52-246 149-335 (364)
36 KOG0732 AAA+-type ATPase conta 100.0 8.3E-29 1.8E-33 266.4 16.2 210 22-248 261-483 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 4.4E-27 9.5E-32 253.8 19.7 209 21-246 173-388 (733)
38 PF00004 AAA: ATPase family as 99.9 3.4E-24 7.4E-29 180.9 12.3 130 62-208 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 6.2E-22 1.3E-26 197.3 17.4 192 26-238 201-402 (457)
40 KOG0744 AAA+-type ATPase [Post 99.9 8.6E-22 1.9E-26 188.6 8.3 153 55-221 173-340 (423)
41 KOG0742 AAA+-type ATPase [Post 99.8 2.2E-19 4.7E-24 176.5 13.3 195 30-246 355-584 (630)
42 COG0466 Lon ATP-dependent Lon 99.8 1.6E-19 3.6E-24 187.7 13.2 148 60-223 351-510 (782)
43 KOG2004 Mitochondrial ATP-depe 99.8 8.5E-19 1.8E-23 181.7 15.7 165 41-223 422-598 (906)
44 TIGR00763 lon ATP-dependent pr 99.8 7.6E-18 1.7E-22 183.0 16.8 165 60-240 348-536 (775)
45 TIGR02881 spore_V_K stage V sp 99.7 3.4E-17 7.4E-22 156.2 16.5 179 26-231 6-203 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 1.9E-17 4.2E-22 160.3 13.9 172 27-224 24-212 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.7 3.7E-17 8.1E-22 158.1 14.4 172 27-224 23-211 (284)
48 KOG0736 Peroxisome assembly fa 99.7 2.8E-16 6.1E-21 164.3 17.5 174 56-246 428-605 (953)
49 COG0464 SpoVK ATPases of the A 99.7 4.7E-16 1E-20 161.0 18.3 175 53-246 12-192 (494)
50 KOG0735 AAA+-type ATPase [Post 99.7 2.5E-16 5.3E-21 163.4 14.8 175 58-246 430-616 (952)
51 PRK10787 DNA-binding ATP-depen 99.7 7.1E-16 1.5E-20 167.2 15.9 164 59-239 349-536 (784)
52 TIGR02639 ClpA ATP-dependent C 99.7 4E-16 8.8E-21 168.7 13.9 166 57-247 201-399 (731)
53 PF05496 RuvB_N: Holliday junc 99.6 9.1E-15 2E-19 135.7 12.7 145 57-228 48-199 (233)
54 PRK11034 clpA ATP-dependent Cl 99.6 5E-15 1.1E-19 159.7 11.4 141 57-222 205-363 (758)
55 TIGR03345 VI_ClpV1 type VI sec 99.6 2E-14 4.4E-19 157.3 14.4 164 58-247 207-404 (852)
56 PRK00080 ruvB Holliday junctio 99.6 3.2E-14 7E-19 140.1 13.9 156 57-239 49-216 (328)
57 PRK10865 protein disaggregatio 99.6 1.3E-14 2.9E-19 159.0 11.3 140 58-222 198-355 (857)
58 CHL00095 clpC Clp protease ATP 99.5 4.5E-14 9.7E-19 154.6 14.7 170 55-250 196-398 (821)
59 PRK05342 clpX ATP-dependent pr 99.5 4.4E-14 9.6E-19 143.1 12.9 102 59-160 108-212 (412)
60 TIGR00382 clpX endopeptidase C 99.5 7.7E-14 1.7E-18 141.0 14.2 128 59-187 116-247 (413)
61 PRK07940 DNA polymerase III su 99.5 9.5E-14 2.1E-18 140.0 13.5 156 55-246 32-214 (394)
62 TIGR03346 chaperone_ClpB ATP-d 99.5 6.9E-14 1.5E-18 153.6 13.3 158 57-240 192-377 (852)
63 TIGR00390 hslU ATP-dependent p 99.5 9E-14 1.9E-18 139.7 12.6 154 58-217 46-342 (441)
64 PRK04195 replication factor C 99.5 1.6E-13 3.6E-18 141.9 14.9 152 57-240 37-194 (482)
65 TIGR00635 ruvB Holliday juncti 99.5 1.9E-13 4.1E-18 132.7 14.2 156 57-239 28-195 (305)
66 PRK14956 DNA polymerase III su 99.5 1.5E-13 3.2E-18 140.6 13.7 160 32-227 11-199 (484)
67 PRK07003 DNA polymerase III su 99.5 1.8E-13 3.8E-18 145.4 14.7 177 33-245 10-220 (830)
68 PHA02544 44 clamp loader, smal 99.5 3.4E-13 7.3E-18 131.5 15.2 177 30-240 12-201 (316)
69 COG2256 MGS1 ATPase related to 99.5 3.5E-13 7.5E-18 133.3 14.0 123 60-219 49-174 (436)
70 PRK05201 hslU ATP-dependent pr 99.5 3.2E-13 6.9E-18 135.8 13.9 154 58-217 49-344 (443)
71 PRK12323 DNA polymerase III su 99.5 2.1E-13 4.5E-18 143.2 12.5 177 33-245 10-225 (700)
72 PRK00149 dnaA chromosomal repl 99.5 1.7E-13 3.6E-18 140.7 11.4 193 21-250 117-324 (450)
73 TIGR00362 DnaA chromosomal rep 99.5 2E-13 4.4E-18 138.1 11.5 171 40-241 118-303 (405)
74 PRK14962 DNA polymerase III su 99.5 7.9E-13 1.7E-17 136.2 15.2 147 57-237 34-207 (472)
75 TIGR02640 gas_vesic_GvpN gas v 99.5 1.1E-12 2.4E-17 125.5 14.7 147 59-221 21-198 (262)
76 PRK12422 chromosomal replicati 99.4 2.4E-12 5.2E-17 131.9 16.5 195 21-251 106-316 (445)
77 PRK13342 recombination factor 99.4 2.4E-12 5.2E-17 130.8 16.0 141 59-236 36-184 (413)
78 COG2255 RuvB Holliday junction 99.4 2.2E-12 4.7E-17 122.7 14.4 178 35-242 22-220 (332)
79 PRK14960 DNA polymerase III su 99.4 1.3E-12 2.8E-17 137.6 13.3 139 55-227 33-196 (702)
80 PRK14086 dnaA chromosomal repl 99.4 1.6E-12 3.5E-17 136.4 13.2 184 21-241 283-481 (617)
81 PF07724 AAA_2: AAA domain (Cd 99.4 1.7E-13 3.8E-18 123.1 4.5 127 58-190 2-132 (171)
82 PLN03025 replication factor C 99.4 1.7E-12 3.6E-17 127.5 11.9 146 61-240 36-192 (319)
83 PRK14088 dnaA chromosomal repl 99.4 1.2E-12 2.6E-17 134.0 10.8 183 21-241 100-298 (440)
84 TIGR02928 orc1/cdc6 family rep 99.4 1.1E-11 2.4E-16 123.1 17.0 166 28-222 7-213 (365)
85 PRK00411 cdc6 cell division co 99.4 6.2E-12 1.3E-16 126.2 15.3 193 27-240 21-246 (394)
86 PRK14961 DNA polymerase III su 99.4 2.9E-12 6.3E-17 128.1 12.6 147 57-231 36-203 (363)
87 PRK06893 DNA replication initi 99.4 3E-12 6.6E-17 120.0 11.7 145 61-241 41-196 (229)
88 PRK07994 DNA polymerase III su 99.4 3.1E-12 6.7E-17 135.6 13.0 155 56-244 35-219 (647)
89 TIGR02639 ClpA ATP-dependent C 99.4 6.2E-12 1.3E-16 136.3 15.4 141 59-222 483-663 (731)
90 PRK14949 DNA polymerase III su 99.4 3.5E-12 7.5E-17 137.9 13.3 167 47-243 28-218 (944)
91 PRK06645 DNA polymerase III su 99.4 5.1E-12 1.1E-16 131.1 13.7 168 32-227 14-206 (507)
92 PRK08691 DNA polymerase III su 99.4 5.3E-12 1.1E-16 133.9 13.9 173 33-235 10-207 (709)
93 PRK11034 clpA ATP-dependent Cl 99.4 5.8E-12 1.3E-16 136.2 14.1 142 60-221 489-666 (758)
94 PTZ00112 origin recognition co 99.4 1.4E-11 3.1E-16 132.0 16.7 186 29-241 748-974 (1164)
95 PRK07764 DNA polymerase III su 99.4 6.8E-12 1.5E-16 136.6 14.3 139 55-227 33-198 (824)
96 PRK14958 DNA polymerase III su 99.4 3.5E-12 7.5E-17 132.7 11.5 159 33-227 10-197 (509)
97 PRK12402 replication factor C 99.4 5.1E-12 1.1E-16 123.7 12.0 154 61-243 38-220 (337)
98 PRK14963 DNA polymerase III su 99.3 1.2E-11 2.5E-16 128.6 14.5 161 33-227 8-194 (504)
99 PF07728 AAA_5: AAA domain (dy 99.3 2.5E-13 5.3E-18 116.8 1.7 120 61-201 1-139 (139)
100 PRK14957 DNA polymerase III su 99.3 1.6E-11 3.5E-16 128.2 14.4 138 56-227 35-197 (546)
101 PRK14964 DNA polymerase III su 99.3 1.1E-11 2.4E-16 127.8 12.8 169 33-235 7-204 (491)
102 PRK05563 DNA polymerase III su 99.3 1.1E-11 2.4E-16 130.4 12.5 137 56-226 35-196 (559)
103 KOG0989 Replication factor C, 99.3 4.3E-12 9.4E-17 121.7 8.4 180 30-243 27-224 (346)
104 TIGR02397 dnaX_nterm DNA polym 99.3 2.4E-11 5.2E-16 120.0 14.1 148 56-237 33-207 (355)
105 TIGR01650 PD_CobS cobaltochela 99.3 4.8E-12 1E-16 124.0 8.5 144 58-221 63-233 (327)
106 cd00009 AAA The AAA+ (ATPases 99.3 2.1E-11 4.6E-16 102.5 11.3 128 58-208 18-150 (151)
107 TIGR00678 holB DNA polymerase 99.3 1.9E-11 4.2E-16 110.7 11.6 140 57-233 12-176 (188)
108 PRK14970 DNA polymerase III su 99.3 2E-11 4.3E-16 121.9 12.5 152 57-237 37-198 (367)
109 PRK05642 DNA replication initi 99.3 3.1E-11 6.8E-16 113.6 12.9 175 22-241 15-201 (234)
110 PRK14959 DNA polymerase III su 99.3 1.9E-11 4.1E-16 128.8 12.5 141 57-231 36-203 (624)
111 PRK05896 DNA polymerase III su 99.3 2E-11 4.2E-16 128.2 12.3 145 55-233 34-205 (605)
112 PRK14952 DNA polymerase III su 99.3 4.2E-11 9.1E-16 126.1 14.7 144 47-226 25-195 (584)
113 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.3E-11 5E-16 112.6 11.4 160 43-242 25-195 (226)
114 PRK14969 DNA polymerase III su 99.3 1.7E-11 3.7E-16 128.1 11.5 145 55-227 34-197 (527)
115 PRK08084 DNA replication initi 99.3 4.9E-11 1.1E-15 112.3 13.5 158 43-241 32-202 (235)
116 PRK14951 DNA polymerase III su 99.3 2E-11 4.2E-16 129.2 11.5 147 45-227 26-202 (618)
117 PRK08903 DnaA regulatory inact 99.3 4.1E-11 8.9E-16 111.6 12.2 168 21-241 13-192 (227)
118 smart00382 AAA ATPases associa 99.3 3.8E-11 8.3E-16 99.7 10.5 125 59-206 2-143 (148)
119 PRK14965 DNA polymerase III su 99.3 2.3E-11 5E-16 128.4 11.4 138 56-227 35-197 (576)
120 PRK14948 DNA polymerase III su 99.3 5.6E-11 1.2E-15 126.2 14.1 147 57-231 36-205 (620)
121 PRK07133 DNA polymerase III su 99.3 4.7E-11 1E-15 127.6 13.5 167 33-227 12-196 (725)
122 PRK06305 DNA polymerase III su 99.3 4.5E-11 9.7E-16 122.8 12.8 145 56-234 36-208 (451)
123 COG1219 ClpX ATP-dependent pro 99.2 2.7E-11 5.9E-16 116.8 9.9 102 60-161 98-202 (408)
124 PRK11331 5-methylcytosine-spec 99.2 2.3E-11 4.9E-16 123.6 9.7 163 23-209 168-358 (459)
125 PRK14953 DNA polymerase III su 99.2 1E-10 2.2E-15 121.1 14.7 152 56-235 35-207 (486)
126 PF00308 Bac_DnaA: Bacterial d 99.2 2.7E-11 5.8E-16 113.0 9.3 182 21-240 3-200 (219)
127 KOG2028 ATPase related to the 99.2 6.8E-11 1.5E-15 115.8 12.2 122 61-219 164-292 (554)
128 KOG1969 DNA replication checkp 99.2 1.2E-10 2.7E-15 122.0 14.7 161 58-240 325-502 (877)
129 PRK06620 hypothetical protein; 99.2 1.1E-10 2.5E-15 108.5 13.0 162 22-241 12-182 (214)
130 PRK13341 recombination factor 99.2 6.3E-11 1.4E-15 127.6 12.6 144 60-240 53-209 (725)
131 PRK14087 dnaA chromosomal repl 99.2 8.8E-11 1.9E-15 120.6 12.7 193 22-249 111-320 (450)
132 TIGR02902 spore_lonB ATP-depen 99.2 5.7E-11 1.2E-15 124.4 10.9 160 57-232 84-289 (531)
133 KOG0745 Putative ATP-dependent 99.2 6.3E-11 1.4E-15 118.1 10.2 143 61-206 228-381 (564)
134 PRK14955 DNA polymerase III su 99.2 5.6E-11 1.2E-15 120.2 9.9 148 55-231 34-211 (397)
135 TIGR03345 VI_ClpV1 type VI sec 99.2 1.2E-10 2.5E-15 128.0 13.1 110 57-187 593-718 (852)
136 PRK09111 DNA polymerase III su 99.2 1.9E-10 4E-15 121.7 13.6 144 55-226 42-209 (598)
137 PRK06647 DNA polymerase III su 99.2 2.2E-10 4.7E-15 120.6 13.1 138 56-227 35-197 (563)
138 PRK08116 hypothetical protein; 99.2 1.8E-10 3.9E-15 110.7 11.2 143 11-188 70-221 (268)
139 PRK14954 DNA polymerase III su 99.1 5.3E-10 1.1E-14 118.6 14.3 149 55-231 34-211 (620)
140 PF05673 DUF815: Protein of un 99.1 7.8E-10 1.7E-14 104.1 13.9 151 44-228 37-214 (249)
141 TIGR03346 chaperone_ClpB ATP-d 99.1 1.2E-09 2.7E-14 120.3 17.5 144 58-221 594-776 (852)
142 PRK05707 DNA polymerase III su 99.1 1.2E-09 2.7E-14 107.8 15.7 157 56-245 19-203 (328)
143 PRK00440 rfc replication facto 99.1 7.7E-10 1.7E-14 107.4 13.8 143 61-237 40-192 (319)
144 PRK08727 hypothetical protein; 99.1 6.1E-10 1.3E-14 104.8 12.5 143 59-240 41-196 (233)
145 PRK10865 protein disaggregatio 99.1 9.9E-10 2.1E-14 120.9 15.9 138 61-221 600-779 (857)
146 CHL00095 clpC Clp protease ATP 99.1 4.2E-10 9E-15 123.6 12.6 112 57-189 536-663 (821)
147 PRK08451 DNA polymerase III su 99.1 5.2E-10 1.1E-14 116.5 12.6 170 33-236 8-206 (535)
148 TIGR02903 spore_lon_C ATP-depe 99.1 6.4E-10 1.4E-14 118.3 13.5 150 58-225 174-370 (615)
149 COG0714 MoxR-like ATPases [Gen 99.1 2.8E-10 6.1E-15 112.2 9.8 146 59-221 43-203 (329)
150 PRK14950 DNA polymerase III su 99.1 5.5E-10 1.2E-14 118.4 12.5 150 57-234 36-207 (585)
151 PHA02244 ATPase-like protein 99.1 4.1E-10 9E-15 111.9 9.5 129 59-209 119-262 (383)
152 PRK07471 DNA polymerase III su 99.1 1.8E-09 3.8E-14 108.2 14.0 163 55-245 37-238 (365)
153 COG1474 CDC6 Cdc6-related prot 99.1 3.2E-09 7E-14 106.3 15.8 188 27-240 8-229 (366)
154 KOG0741 AAA+-type ATPase [Post 99.1 4.5E-10 9.7E-15 114.3 9.6 137 54-212 533-674 (744)
155 PRK12377 putative replication 99.0 1.3E-09 2.8E-14 103.6 11.1 136 16-188 64-206 (248)
156 COG0470 HolB ATPase involved i 99.0 9.6E-10 2.1E-14 106.8 9.8 122 57-208 22-167 (325)
157 PRK09112 DNA polymerase III su 99.0 6.3E-09 1.4E-13 103.7 15.7 184 33-244 17-239 (351)
158 PRK05564 DNA polymerase III su 99.0 3.1E-09 6.6E-14 104.1 12.8 150 55-234 22-176 (313)
159 COG0542 clpA ATP-binding subun 99.0 1.3E-09 2.9E-14 116.8 10.5 113 54-187 515-643 (786)
160 PRK14971 DNA polymerase III su 99.0 3.1E-09 6.7E-14 113.0 12.5 139 55-227 35-199 (614)
161 PRK06964 DNA polymerase III su 99.0 1.1E-08 2.5E-13 101.4 14.7 157 57-245 19-225 (342)
162 PRK07952 DNA replication prote 99.0 5.1E-09 1.1E-13 99.4 11.3 136 16-188 62-205 (244)
163 PRK06835 DNA replication prote 98.9 3.5E-09 7.5E-14 104.6 10.2 91 35-134 160-258 (329)
164 PRK06921 hypothetical protein; 98.9 1E-08 2.2E-13 98.5 11.9 68 58-133 116-188 (266)
165 PRK07399 DNA polymerase III su 98.9 3.2E-08 6.9E-13 97.3 15.3 162 56-246 23-222 (314)
166 PRK13407 bchI magnesium chelat 98.9 3.9E-09 8.4E-14 104.5 8.3 84 122-221 128-216 (334)
167 COG1220 HslU ATP-dependent pro 98.9 1.9E-08 4.1E-13 98.0 12.5 91 121-217 249-345 (444)
168 PRK08939 primosomal protein Dn 98.9 1.7E-08 3.6E-13 98.9 11.4 69 57-133 154-228 (306)
169 PRK04132 replication factor C 98.9 1.8E-08 4E-13 109.8 12.6 141 62-236 567-719 (846)
170 PRK08769 DNA polymerase III su 98.8 4.3E-08 9.2E-13 96.5 13.7 160 55-246 22-209 (319)
171 PRK08181 transposase; Validate 98.8 6.1E-09 1.3E-13 100.2 7.5 73 58-136 105-181 (269)
172 COG0593 DnaA ATPase involved i 98.8 7.9E-08 1.7E-12 97.0 15.3 184 19-241 80-279 (408)
173 PRK06871 DNA polymerase III su 98.8 4.3E-08 9.2E-13 96.7 12.6 163 55-245 20-203 (325)
174 PRK08058 DNA polymerase III su 98.8 5.2E-08 1.1E-12 96.3 13.1 132 55-219 24-180 (329)
175 PRK09087 hypothetical protein; 98.8 6.7E-08 1.5E-12 90.7 13.0 133 60-240 45-187 (226)
176 COG2607 Predicted ATPase (AAA+ 98.8 1.4E-07 2.9E-12 88.4 13.5 150 45-228 71-246 (287)
177 COG2812 DnaX DNA polymerase II 98.8 1.5E-08 3.3E-13 104.8 7.8 158 55-240 34-212 (515)
178 COG0542 clpA ATP-binding subun 98.7 3.6E-08 7.9E-13 105.9 10.1 137 60-222 192-347 (786)
179 PF07726 AAA_3: ATPase family 98.7 1.4E-08 3E-13 86.9 5.5 117 61-197 1-127 (131)
180 PRK07993 DNA polymerase III su 98.7 8.6E-08 1.9E-12 95.0 11.8 157 55-245 20-204 (334)
181 CHL00081 chlI Mg-protoporyphyr 98.7 7.3E-08 1.6E-12 95.8 11.3 86 120-221 142-232 (350)
182 smart00350 MCM minichromosome 98.7 7.8E-09 1.7E-13 107.9 4.5 137 61-221 238-400 (509)
183 TIGR02031 BchD-ChlD magnesium 98.7 1.2E-08 2.6E-13 108.2 5.6 144 60-221 17-174 (589)
184 PRK06090 DNA polymerase III su 98.7 2.9E-07 6.3E-12 90.6 14.8 157 55-246 21-202 (319)
185 PRK06526 transposase; Provisio 98.7 2.9E-08 6.3E-13 94.8 7.5 74 57-136 96-173 (254)
186 TIGR00602 rad24 checkpoint pro 98.7 1.7E-07 3.6E-12 99.8 13.8 168 32-222 77-288 (637)
187 PRK08699 DNA polymerase III su 98.7 1E-07 2.2E-12 94.2 11.1 134 57-219 19-183 (325)
188 TIGR02442 Cob-chelat-sub cobal 98.7 2.1E-08 4.6E-13 107.3 6.5 144 60-221 26-214 (633)
189 COG1484 DnaC DNA replication p 98.7 1.7E-07 3.7E-12 89.5 12.0 67 58-132 104-177 (254)
190 PF01695 IstB_IS21: IstB-like 98.7 1.6E-08 3.4E-13 91.5 4.3 66 57-132 45-118 (178)
191 smart00763 AAA_PrkA PrkA AAA d 98.7 1.4E-07 3E-12 93.8 11.0 56 58-113 77-143 (361)
192 PRK09183 transposase/IS protei 98.6 3.5E-08 7.6E-13 94.4 5.4 75 56-135 99-177 (259)
193 TIGR02030 BchI-ChlI magnesium 98.6 6.6E-08 1.4E-12 95.9 7.3 86 120-221 129-219 (337)
194 PF00158 Sigma54_activat: Sigm 98.6 5.6E-08 1.2E-12 87.2 5.5 122 57-202 20-155 (168)
195 TIGR03015 pepcterm_ATPase puta 98.6 3.3E-06 7.1E-11 80.1 18.0 76 59-134 43-135 (269)
196 PF13177 DNA_pol3_delta2: DNA 98.6 1E-07 2.2E-12 84.8 6.3 120 55-205 15-157 (162)
197 PRK13531 regulatory ATPase Rav 98.6 1.2E-07 2.6E-12 97.4 7.4 141 58-220 38-193 (498)
198 PF00910 RNA_helicase: RNA hel 98.5 3E-07 6.5E-12 76.1 7.7 25 62-86 1-25 (107)
199 PF13401 AAA_22: AAA domain; P 98.5 3.3E-07 7.2E-12 77.1 6.7 75 58-135 3-100 (131)
200 COG1224 TIP49 DNA helicase TIP 98.4 4.2E-07 9.1E-12 89.4 7.5 59 55-114 61-121 (450)
201 PF03969 AFG1_ATPase: AFG1-lik 98.4 2E-07 4.4E-12 93.3 5.0 32 54-85 57-88 (362)
202 TIGR02974 phageshock_pspF psp 98.4 5.7E-07 1.2E-11 89.0 7.7 133 58-213 21-175 (329)
203 PF03215 Rad17: Rad17 cell cyc 98.4 3.2E-06 6.9E-11 88.4 13.6 46 46-91 30-77 (519)
204 PF06068 TIP49: TIP49 C-termin 98.4 3.9E-07 8.4E-12 90.5 6.2 56 58-114 49-106 (398)
205 cd01120 RecA-like_NTPases RecA 98.4 1.2E-06 2.7E-11 75.4 8.5 74 62-137 2-100 (165)
206 PRK11608 pspF phage shock prot 98.4 9.9E-07 2.1E-11 87.2 8.2 134 57-213 27-182 (326)
207 PF12775 AAA_7: P-loop contain 98.3 2.4E-07 5.3E-12 89.3 3.0 142 59-221 33-193 (272)
208 TIGR01817 nifA Nif-specific re 98.3 5.2E-07 1.1E-11 94.7 5.7 110 58-188 218-341 (534)
209 PF13173 AAA_14: AAA domain 98.3 3.3E-06 7.1E-11 71.8 9.3 69 60-134 3-73 (128)
210 TIGR00368 Mg chelatase-related 98.3 1.2E-06 2.6E-11 91.2 6.7 46 37-83 190-235 (499)
211 PRK11388 DNA-binding transcrip 98.3 2.1E-06 4.6E-11 92.0 8.4 131 59-213 348-498 (638)
212 KOG1514 Origin recognition com 98.3 7.4E-06 1.6E-10 86.5 11.8 154 61-241 424-613 (767)
213 PHA00729 NTP-binding motif con 98.2 2.3E-06 4.9E-11 80.2 6.6 27 60-86 18-44 (226)
214 PRK10820 DNA-binding transcrip 98.2 3.2E-06 6.8E-11 88.7 8.2 158 60-240 228-421 (520)
215 PF05729 NACHT: NACHT domain 98.2 1.8E-05 3.9E-10 68.6 11.4 144 60-222 1-164 (166)
216 PRK15424 propionate catabolism 98.2 2.2E-06 4.7E-11 90.0 5.9 110 58-188 241-373 (538)
217 TIGR02237 recomb_radB DNA repa 98.2 1.5E-05 3.3E-10 73.1 10.6 83 54-136 7-111 (209)
218 KOG1051 Chaperone HSP104 and r 98.2 6.8E-06 1.5E-10 89.8 9.6 112 57-189 589-712 (898)
219 PRK05022 anaerobic nitric oxid 98.2 8.1E-06 1.8E-10 85.4 9.6 136 58-216 209-367 (509)
220 PF06309 Torsin: Torsin; Inte 98.1 2.4E-05 5.2E-10 66.9 10.5 44 40-83 34-77 (127)
221 PF00931 NB-ARC: NB-ARC domain 98.1 6.7E-05 1.5E-09 71.7 14.7 26 57-82 17-42 (287)
222 TIGR02329 propionate_PrpR prop 98.1 5E-06 1.1E-10 87.2 6.9 110 58-188 234-358 (526)
223 KOG2170 ATPase of the AAA+ sup 98.1 9.2E-06 2E-10 78.5 7.9 94 40-136 91-192 (344)
224 PTZ00111 DNA replication licen 98.1 3.5E-06 7.7E-11 92.1 5.5 138 60-216 493-652 (915)
225 KOG0991 Replication factor C, 98.1 6.6E-06 1.4E-10 77.1 6.5 95 32-135 20-126 (333)
226 PRK15429 formate hydrogenlyase 98.1 7.8E-06 1.7E-10 88.4 8.1 108 58-188 398-521 (686)
227 KOG2227 Pre-initiation complex 98.1 3.7E-05 8E-10 78.2 12.1 171 44-241 159-364 (529)
228 KOG1968 Replication factor C, 98.1 6.1E-06 1.3E-10 90.5 6.9 156 61-244 359-526 (871)
229 PRK05917 DNA polymerase III su 98.1 1.3E-05 2.9E-10 77.8 8.4 125 55-207 15-152 (290)
230 PF14532 Sigma54_activ_2: Sigm 98.0 4.8E-06 1E-10 71.7 4.5 61 58-136 20-83 (138)
231 COG1221 PspF Transcriptional r 98.0 2.9E-05 6.3E-10 78.4 10.1 133 58-213 100-252 (403)
232 PF12774 AAA_6: Hydrolytic ATP 98.0 6.5E-05 1.4E-09 70.9 11.8 141 58-217 31-176 (231)
233 COG3829 RocR Transcriptional r 98.0 8.4E-06 1.8E-10 84.2 5.8 148 20-202 239-402 (560)
234 PF01637 Arch_ATPase: Archaeal 98.0 0.00011 2.5E-09 67.0 12.9 26 58-83 19-44 (234)
235 PRK07132 DNA polymerase III su 98.0 0.00014 3.1E-09 71.1 14.1 130 57-219 16-160 (299)
236 COG1239 ChlI Mg-chelatase subu 98.0 5.6E-05 1.2E-09 76.2 11.4 146 60-223 39-234 (423)
237 PRK09862 putative ATP-dependen 98.0 1.2E-05 2.5E-10 83.8 6.8 27 57-83 208-234 (506)
238 PF13207 AAA_17: AAA domain; P 98.0 6.4E-06 1.4E-10 68.5 3.9 32 61-92 1-32 (121)
239 PHA02774 E1; Provisional 98.0 4.6E-05 1E-09 79.9 10.9 118 43-194 420-539 (613)
240 cd01124 KaiC KaiC is a circadi 98.0 9.2E-05 2E-09 66.1 11.6 31 62-92 2-35 (187)
241 PRK08118 topology modulation p 98.0 2.3E-05 5E-10 70.1 7.3 44 61-104 3-46 (167)
242 KOG1970 Checkpoint RAD17-RFC c 97.9 9.1E-05 2E-09 76.6 12.3 57 36-93 78-144 (634)
243 PLN03210 Resistant to P. syrin 97.9 0.0002 4.3E-09 81.9 16.5 32 55-86 203-234 (1153)
244 PRK15115 response regulator Gl 97.9 1.4E-05 3.1E-10 81.5 6.6 132 59-214 157-311 (444)
245 PF05621 TniB: Bacterial TniB 97.9 0.00012 2.5E-09 71.4 12.3 90 46-135 48-158 (302)
246 PRK09361 radB DNA repair and r 97.9 2.9E-05 6.4E-10 72.1 7.9 40 54-93 18-60 (225)
247 KOG2680 DNA helicase TIP49, TB 97.9 0.00011 2.3E-09 71.3 11.6 44 55-98 62-107 (454)
248 COG1618 Predicted nucleotide k 97.9 8E-05 1.7E-09 66.2 10.0 29 56-84 2-30 (179)
249 PRK00131 aroK shikimate kinase 97.9 1.3E-05 2.9E-10 70.5 4.8 34 57-90 2-35 (175)
250 PHA02624 large T antigen; Prov 97.9 0.00011 2.3E-09 77.6 12.1 150 43-215 417-568 (647)
251 TIGR02012 tigrfam_recA protein 97.9 9.3E-05 2E-09 73.0 10.9 84 54-137 50-148 (321)
252 PRK09376 rho transcription ter 97.9 3E-05 6.4E-10 78.1 7.3 75 62-136 172-270 (416)
253 KOG0990 Replication factor C, 97.9 2.2E-05 4.7E-10 76.5 6.1 133 61-224 64-206 (360)
254 cd00983 recA RecA is a bacter 97.9 0.00012 2.5E-09 72.4 11.2 84 54-137 50-148 (325)
255 PF13671 AAA_33: AAA domain; P 97.9 1.8E-05 4E-10 67.6 4.7 32 62-95 2-33 (143)
256 PF03266 NTPase_1: NTPase; In 97.8 4E-06 8.6E-11 75.3 0.4 22 62-83 2-23 (168)
257 PF00493 MCM: MCM2/3/5 family 97.8 1.8E-05 3.8E-10 78.5 5.1 134 59-221 57-221 (331)
258 PRK06067 flagellar accessory p 97.8 7.8E-05 1.7E-09 69.8 9.1 82 54-135 20-133 (234)
259 PRK07276 DNA polymerase III su 97.8 0.00034 7.3E-09 68.1 13.7 134 55-218 20-172 (290)
260 KOG1942 DNA helicase, TBP-inte 97.8 1.9E-05 4.1E-10 76.2 4.5 57 58-115 63-121 (456)
261 PRK10923 glnG nitrogen regulat 97.8 3.2E-05 7E-10 79.6 6.4 133 58-213 160-314 (469)
262 PRK07261 topology modulation p 97.8 5.8E-05 1.3E-09 67.7 7.2 43 61-103 2-44 (171)
263 PRK13947 shikimate kinase; Pro 97.8 8E-05 1.7E-09 65.9 7.7 41 61-103 3-43 (171)
264 PRK11823 DNA repair protein Ra 97.8 9.7E-05 2.1E-09 76.1 9.3 80 54-137 75-171 (446)
265 cd01128 rho_factor Transcripti 97.8 9.4E-05 2E-09 70.5 8.5 79 57-135 14-116 (249)
266 KOG2035 Replication factor C, 97.8 0.00026 5.7E-09 67.9 11.4 167 32-227 6-205 (351)
267 PRK11361 acetoacetate metaboli 97.8 6.7E-05 1.5E-09 76.8 8.0 109 59-188 166-288 (457)
268 PRK05818 DNA polymerase III su 97.8 0.00019 4E-09 68.7 10.1 122 57-206 5-144 (261)
269 TIGR02915 PEP_resp_reg putativ 97.7 4.7E-05 1E-09 77.8 6.4 133 59-214 162-316 (445)
270 TIGR00764 lon_rel lon-related 97.7 3.3E-05 7.1E-10 82.5 5.1 90 30-124 8-108 (608)
271 cd03283 ABC_MutS-like MutS-lik 97.7 0.00023 5.1E-09 65.4 10.1 24 59-82 25-48 (199)
272 cd00227 CPT Chloramphenicol (C 97.7 7.4E-05 1.6E-09 66.9 6.4 34 59-92 2-35 (175)
273 COG1485 Predicted ATPase [Gene 97.7 0.00023 5E-09 70.3 9.9 30 56-85 62-91 (367)
274 cd01394 radB RadB. The archaea 97.7 0.00031 6.7E-09 64.8 10.2 39 54-92 14-55 (218)
275 PRK06762 hypothetical protein; 97.7 0.0001 2.2E-09 65.1 6.4 38 59-96 2-39 (166)
276 PRK13695 putative NTPase; Prov 97.6 0.00027 6E-09 63.0 9.2 23 61-83 2-24 (174)
277 cd02021 GntK Gluconate kinase 97.6 0.00019 4.2E-09 62.1 8.0 28 62-89 2-29 (150)
278 TIGR01618 phage_P_loop phage n 97.6 5.7E-05 1.2E-09 70.7 4.8 24 58-81 11-34 (220)
279 PRK03839 putative kinase; Prov 97.6 4.6E-05 9.9E-10 68.3 4.0 31 61-91 2-32 (180)
280 PRK08533 flagellar accessory p 97.6 0.00066 1.4E-08 63.8 11.8 39 54-92 19-60 (230)
281 PRK09354 recA recombinase A; P 97.6 0.0005 1.1E-08 68.6 11.2 84 54-137 55-153 (349)
282 PLN02200 adenylate kinase fami 97.6 7.5E-05 1.6E-09 70.5 5.0 41 54-96 38-78 (234)
283 cd00464 SK Shikimate kinase (S 97.6 6.6E-05 1.4E-09 64.9 4.2 30 62-91 2-31 (154)
284 PRK13948 shikimate kinase; Pro 97.6 0.00014 3E-09 66.1 6.4 45 57-103 8-52 (182)
285 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00034 7.4E-09 65.1 9.1 83 54-136 14-129 (235)
286 cd01131 PilT Pilus retraction 97.6 0.00014 3E-09 66.7 6.3 67 61-131 3-83 (198)
287 PRK00625 shikimate kinase; Pro 97.6 8.1E-05 1.7E-09 67.1 4.3 31 61-91 2-32 (173)
288 TIGR01313 therm_gnt_kin carboh 97.6 0.00023 4.9E-09 62.6 7.1 28 62-89 1-28 (163)
289 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00099 2.1E-08 61.9 11.6 23 59-81 29-51 (213)
290 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 7.8E-05 1.7E-09 66.7 4.0 33 62-96 2-34 (183)
291 PRK08233 hypothetical protein; 97.5 0.00033 7.2E-09 62.2 8.1 32 59-90 3-35 (182)
292 cd01393 recA_like RecA is a b 97.5 0.00056 1.2E-08 63.3 9.8 30 54-83 14-43 (226)
293 KOG3347 Predicted nucleotide k 97.5 6.9E-05 1.5E-09 65.7 3.4 31 61-91 9-39 (176)
294 PRK14531 adenylate kinase; Pro 97.5 9.3E-05 2E-09 66.8 4.5 30 60-89 3-32 (183)
295 PF06745 KaiC: KaiC; InterPro 97.5 0.00034 7.4E-09 65.0 8.3 81 54-134 14-127 (226)
296 PRK14532 adenylate kinase; Pro 97.5 8.1E-05 1.8E-09 67.1 3.9 34 61-96 2-35 (188)
297 TIGR01818 ntrC nitrogen regula 97.5 4.2E-05 9.2E-10 78.4 1.9 73 58-136 156-242 (463)
298 cd01121 Sms Sms (bacterial rad 97.5 0.00061 1.3E-08 68.7 10.0 80 54-137 77-173 (372)
299 cd02027 APSK Adenosine 5'-phos 97.5 0.00033 7.1E-09 61.3 7.0 34 62-95 2-38 (149)
300 PTZ00088 adenylate kinase 1; P 97.5 0.00014 3.1E-09 68.4 4.9 35 57-91 4-38 (229)
301 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00044 9.5E-09 65.1 8.2 83 54-136 16-140 (237)
302 PHA02530 pseT polynucleotide k 97.5 0.00031 6.8E-09 67.9 7.3 36 59-95 2-37 (300)
303 cd03238 ABC_UvrA The excision 97.5 0.0014 3E-08 59.3 11.0 28 55-82 17-44 (176)
304 COG2204 AtoC Response regulato 97.5 0.00045 9.7E-09 71.1 8.7 109 58-188 163-286 (464)
305 PRK10365 transcriptional regul 97.5 0.00034 7.3E-09 71.2 7.8 73 59-137 162-248 (441)
306 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.6E-09 65.6 4.0 31 61-91 3-33 (169)
307 PRK13946 shikimate kinase; Pro 97.4 0.00026 5.6E-09 64.0 6.3 34 58-91 9-42 (184)
308 COG0563 Adk Adenylate kinase a 97.4 0.00014 3E-09 65.9 4.4 34 61-96 2-35 (178)
309 cd01428 ADK Adenylate kinase ( 97.4 0.00012 2.6E-09 65.9 4.0 28 62-89 2-29 (194)
310 cd02020 CMPK Cytidine monophos 97.4 0.00013 2.7E-09 62.5 3.9 30 62-91 2-31 (147)
311 KOG0478 DNA replication licens 97.4 0.00015 3.3E-09 76.6 5.1 134 58-211 461-616 (804)
312 PF05707 Zot: Zonular occluden 97.4 0.00029 6.2E-09 64.3 6.4 121 61-206 2-142 (193)
313 KOG2383 Predicted ATPase [Gene 97.4 0.00045 9.7E-09 69.3 8.1 27 57-83 112-138 (467)
314 PF05272 VirE: Virulence-assoc 97.4 0.00071 1.5E-08 62.3 8.9 30 53-82 46-75 (198)
315 PRK09519 recA DNA recombinatio 97.4 0.00055 1.2E-08 74.6 9.1 83 54-136 55-152 (790)
316 PRK06547 hypothetical protein; 97.4 0.00017 3.7E-09 64.9 4.4 43 57-101 13-55 (172)
317 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00098 2.1E-08 63.8 9.8 82 54-135 31-144 (259)
318 cd00984 DnaB_C DnaB helicase C 97.4 0.0011 2.3E-08 62.0 9.9 38 54-91 8-49 (242)
319 PRK06696 uridine kinase; Valid 97.4 0.00042 9E-09 64.6 7.0 53 43-96 7-62 (223)
320 COG4619 ABC-type uncharacteriz 97.4 0.00072 1.6E-08 60.8 8.1 28 55-82 25-52 (223)
321 TIGR02858 spore_III_AA stage I 97.4 0.00025 5.3E-09 68.5 5.5 25 60-84 112-136 (270)
322 PRK14527 adenylate kinase; Pro 97.4 0.00016 3.4E-09 65.7 3.9 32 57-88 4-35 (191)
323 PRK05973 replicative DNA helic 97.4 0.0023 5.1E-08 60.6 12.0 38 54-91 59-99 (237)
324 PRK06217 hypothetical protein; 97.4 0.00017 3.8E-09 65.0 4.1 31 61-91 3-33 (183)
325 PRK05537 bifunctional sulfate 97.4 0.00086 1.9E-08 71.2 9.8 100 29-131 363-473 (568)
326 PRK04296 thymidine kinase; Pro 97.4 0.00059 1.3E-08 62.2 7.5 71 60-132 3-88 (190)
327 COG0703 AroK Shikimate kinase 97.4 0.00018 3.9E-09 64.7 4.0 42 60-103 3-44 (172)
328 PRK04040 adenylate kinase; Pro 97.3 0.00021 4.5E-09 65.2 4.4 31 58-88 1-33 (188)
329 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00043 9.3E-09 65.5 6.7 69 62-131 2-76 (249)
330 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.3E-09 66.3 4.3 30 61-90 5-34 (215)
331 PF13521 AAA_28: AAA domain; P 97.3 0.00025 5.4E-09 62.5 4.6 27 62-89 2-28 (163)
332 TIGR02782 TrbB_P P-type conjug 97.3 0.0003 6.5E-09 68.8 5.6 70 58-131 131-213 (299)
333 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00023 4.9E-09 63.7 4.3 29 61-89 5-33 (188)
334 TIGR00767 rho transcription te 97.3 0.00067 1.5E-08 68.7 8.0 76 60-135 169-268 (415)
335 cd00544 CobU Adenosylcobinamid 97.3 0.0012 2.6E-08 59.3 8.8 33 62-94 2-34 (169)
336 TIGR02236 recomb_radA DNA repa 97.3 0.0008 1.7E-08 65.8 8.2 30 54-83 90-119 (310)
337 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0023 5E-08 59.4 10.6 81 54-134 11-119 (224)
338 PRK02496 adk adenylate kinase; 97.3 0.00025 5.4E-09 63.8 3.9 30 61-90 3-32 (184)
339 PRK03731 aroL shikimate kinase 97.3 0.00031 6.8E-09 62.2 4.4 31 61-91 4-34 (171)
340 PRK04301 radA DNA repair and r 97.3 0.0017 3.6E-08 63.9 9.9 30 54-83 97-126 (317)
341 PRK14528 adenylate kinase; Pro 97.3 0.00031 6.6E-09 63.8 4.3 29 61-89 3-31 (186)
342 PRK15455 PrkA family serine pr 97.2 0.00049 1.1E-08 72.4 6.3 36 58-93 102-138 (644)
343 PF01583 APS_kinase: Adenylyls 97.2 0.0011 2.5E-08 58.8 7.7 69 59-129 2-80 (156)
344 COG1102 Cmk Cytidylate kinase 97.2 0.00025 5.4E-09 63.1 3.5 29 61-89 2-30 (179)
345 cd01130 VirB11-like_ATPase Typ 97.2 0.00061 1.3E-08 61.7 6.2 71 57-131 23-109 (186)
346 PRK08154 anaerobic benzoate ca 97.2 0.00061 1.3E-08 66.9 6.7 50 42-91 115-165 (309)
347 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0011 2.3E-08 60.7 7.9 45 55-99 11-56 (199)
348 TIGR01351 adk adenylate kinase 97.2 0.00027 5.9E-09 65.2 3.9 28 62-89 2-29 (210)
349 COG3854 SpoIIIAA ncharacterize 97.2 0.00061 1.3E-08 64.1 6.1 71 61-131 139-227 (308)
350 PF13191 AAA_16: AAA ATPase do 97.2 0.00051 1.1E-08 60.8 5.5 42 54-95 19-63 (185)
351 TIGR01420 pilT_fam pilus retra 97.2 0.00066 1.4E-08 67.6 6.9 68 60-131 123-204 (343)
352 PRK12608 transcription termina 97.2 0.00058 1.3E-08 68.6 6.4 76 61-136 135-234 (380)
353 PRK00279 adk adenylate kinase; 97.2 0.00032 6.8E-09 64.9 4.1 29 61-89 2-30 (215)
354 COG5271 MDN1 AAA ATPase contai 97.2 0.0014 3.1E-08 75.0 9.6 148 56-223 1540-1705(4600)
355 TIGR00416 sms DNA repair prote 97.2 0.0041 9E-08 64.3 12.6 83 54-136 89-184 (454)
356 PLN03187 meiotic recombination 97.2 0.0028 6E-08 63.3 10.9 29 54-82 121-149 (344)
357 COG3604 FhlA Transcriptional r 97.2 0.00033 7E-09 72.0 4.3 121 57-202 244-379 (550)
358 cd03216 ABC_Carb_Monos_I This 97.2 0.0022 4.7E-08 56.8 9.2 29 55-83 22-50 (163)
359 TIGR02688 conserved hypothetic 97.2 0.00064 1.4E-08 69.2 6.3 27 56-82 206-232 (449)
360 cd03243 ABC_MutS_homologs The 97.2 0.0034 7.3E-08 57.5 10.6 22 59-80 29-50 (202)
361 COG1936 Predicted nucleotide k 97.2 0.00028 6E-09 63.4 3.2 30 61-91 2-31 (180)
362 PRK13764 ATPase; Provisional 97.2 0.00052 1.1E-08 72.9 5.8 27 58-84 256-282 (602)
363 PRK05057 aroK shikimate kinase 97.2 0.00042 9.2E-09 62.1 4.5 34 59-92 4-37 (172)
364 PF13245 AAA_19: Part of AAA d 97.2 0.00065 1.4E-08 52.9 4.9 33 61-93 12-51 (76)
365 TIGR02238 recomb_DMC1 meiotic 97.2 0.0026 5.6E-08 62.7 10.3 82 54-136 91-205 (313)
366 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.003 6.5E-08 56.3 9.5 73 62-134 5-107 (159)
367 KOG0477 DNA replication licens 97.1 0.00066 1.4E-08 71.2 5.9 136 60-223 483-652 (854)
368 cd01122 GP4d_helicase GP4d_hel 97.1 0.0022 4.7E-08 61.1 8.9 39 54-92 25-67 (271)
369 PF08433 KTI12: Chromatin asso 97.1 0.0012 2.7E-08 63.6 7.1 72 62-134 4-82 (270)
370 PLN02674 adenylate kinase 97.1 0.0005 1.1E-08 65.4 4.3 38 57-96 29-66 (244)
371 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0006 1.3E-08 59.0 4.4 30 57-86 20-49 (133)
372 PRK01184 hypothetical protein; 97.1 0.00052 1.1E-08 61.6 4.2 30 60-90 2-31 (184)
373 PRK13406 bchD magnesium chelat 97.1 0.0025 5.4E-08 67.8 9.9 138 51-206 15-165 (584)
374 COG1241 MCM2 Predicted ATPase 97.1 0.00028 6E-09 75.7 2.7 142 60-221 320-487 (682)
375 cd03115 SRP The signal recogni 97.1 0.0022 4.8E-08 56.9 8.2 33 61-93 2-37 (173)
376 PF01078 Mg_chelatase: Magnesi 97.1 0.00039 8.4E-09 64.4 3.3 24 60-83 23-46 (206)
377 PF00406 ADK: Adenylate kinase 97.1 0.00036 7.9E-09 60.7 3.0 31 64-96 1-31 (151)
378 PRK04182 cytidylate kinase; Pr 97.1 0.00053 1.2E-08 60.7 4.1 29 61-89 2-30 (180)
379 PF00437 T2SE: Type II/IV secr 97.1 0.00059 1.3E-08 65.2 4.6 71 57-131 125-206 (270)
380 PF00448 SRP54: SRP54-type pro 97.1 0.0017 3.7E-08 59.6 7.4 25 59-83 1-25 (196)
381 PF13238 AAA_18: AAA domain; P 97.1 0.00042 9.2E-09 57.5 3.1 22 62-83 1-22 (129)
382 PRK04220 2-phosphoglycerate ki 97.1 0.00099 2.1E-08 65.1 5.9 33 55-87 88-120 (301)
383 PRK05541 adenylylsulfate kinas 97.1 0.0021 4.5E-08 57.4 7.5 38 57-94 5-45 (176)
384 cd00046 DEXDc DEAD-like helica 97.0 0.00061 1.3E-08 56.1 3.8 25 60-84 1-25 (144)
385 PRK13833 conjugal transfer pro 97.0 0.0012 2.5E-08 65.4 6.4 69 59-131 144-224 (323)
386 PRK09302 circadian clock prote 97.0 0.0042 9E-08 65.0 10.9 83 54-136 26-144 (509)
387 TIGR02525 plasmid_TraJ plasmid 97.0 0.0012 2.6E-08 66.6 6.5 67 61-131 151-234 (372)
388 TIGR02788 VirB11 P-type DNA tr 97.0 0.0015 3.2E-08 64.1 7.0 73 55-131 140-227 (308)
389 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0012 2.6E-08 65.3 6.4 71 59-130 162-240 (325)
390 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0058 1.2E-07 55.9 10.5 21 60-80 29-49 (200)
391 PRK12339 2-phosphoglycerate ki 97.0 0.00068 1.5E-08 62.4 4.2 30 58-87 2-31 (197)
392 PRK14526 adenylate kinase; Pro 97.0 0.00064 1.4E-08 63.2 4.0 32 62-95 3-34 (211)
393 PTZ00035 Rad51 protein; Provis 97.0 0.0042 9E-08 61.9 10.1 30 54-83 113-142 (337)
394 PRK05800 cobU adenosylcobinami 97.0 0.0019 4.2E-08 58.0 6.9 34 61-94 3-36 (170)
395 cd02019 NK Nucleoside/nucleoti 97.0 0.001 2.2E-08 50.5 4.4 31 62-92 2-33 (69)
396 smart00534 MUTSac ATPase domai 97.0 0.0095 2.1E-07 53.9 11.5 19 62-80 2-20 (185)
397 TIGR00455 apsK adenylylsulfate 97.0 0.0023 4.9E-08 57.6 7.3 42 55-96 14-58 (184)
398 PF02456 Adeno_IVa2: Adenoviru 97.0 0.0022 4.8E-08 62.5 7.6 39 44-82 65-110 (369)
399 COG4650 RtcR Sigma54-dependent 97.0 0.0013 2.7E-08 63.9 5.9 73 57-135 206-295 (531)
400 PF13086 AAA_11: AAA domain; P 97.0 0.00053 1.2E-08 62.5 3.2 23 61-83 19-41 (236)
401 PRK14722 flhF flagellar biosyn 97.0 0.001 2.2E-08 67.0 5.5 28 56-83 134-161 (374)
402 PRK03846 adenylylsulfate kinas 97.0 0.0027 5.9E-08 58.0 7.8 39 57-95 22-63 (198)
403 PRK04328 hypothetical protein; 97.0 0.0031 6.8E-08 59.9 8.4 82 54-135 18-141 (249)
404 TIGR02173 cyt_kin_arch cytidyl 97.0 0.00078 1.7E-08 59.2 4.0 29 61-89 2-30 (171)
405 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0053 1.2E-07 53.6 9.1 29 56-84 22-50 (157)
406 PRK14974 cell division protein 96.9 0.0068 1.5E-07 60.3 10.7 35 58-92 139-176 (336)
407 PF04665 Pox_A32: Poxvirus A32 96.9 0.012 2.7E-07 55.8 12.0 138 55-221 9-170 (241)
408 PLN02459 probable adenylate ki 96.9 0.0012 2.5E-08 63.5 5.0 36 58-95 28-63 (261)
409 TIGR01425 SRP54_euk signal rec 96.9 0.0069 1.5E-07 62.1 10.9 37 57-93 98-137 (429)
410 PRK00889 adenylylsulfate kinas 96.9 0.0028 6E-08 56.5 7.1 37 58-94 3-42 (175)
411 PRK13894 conjugal transfer ATP 96.9 0.0016 3.5E-08 64.3 6.1 70 58-131 147-228 (319)
412 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0073 1.6E-07 56.2 10.2 22 60-81 31-52 (216)
413 PRK12338 hypothetical protein; 96.9 0.00095 2.1E-08 65.8 4.4 31 58-88 3-33 (319)
414 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0094 2E-07 55.1 10.8 27 55-81 25-51 (204)
415 COG0529 CysC Adenylylsulfate k 96.9 0.0045 9.8E-08 56.0 8.1 60 55-114 19-88 (197)
416 cd03228 ABCC_MRP_Like The MRP 96.9 0.0071 1.5E-07 53.8 9.5 29 55-83 24-52 (171)
417 PLN03186 DNA repair protein RA 96.9 0.0047 1E-07 61.6 9.0 82 55-136 119-232 (342)
418 PF01443 Viral_helicase1: Vira 96.9 0.00035 7.6E-09 64.6 0.9 22 62-83 1-22 (234)
419 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0063 1.4E-07 53.8 8.9 25 59-83 21-45 (162)
420 COG1066 Sms Predicted ATP-depe 96.9 0.0054 1.2E-07 62.0 9.3 149 55-221 89-256 (456)
421 PRK00771 signal recognition pa 96.8 0.0079 1.7E-07 61.9 10.7 37 57-93 93-132 (437)
422 PRK00300 gmk guanylate kinase; 96.8 0.0051 1.1E-07 56.0 8.4 28 57-84 3-30 (205)
423 COG1373 Predicted ATPase (AAA+ 96.8 0.0095 2.1E-07 60.6 11.1 80 48-134 27-106 (398)
424 cd03247 ABCC_cytochrome_bd The 96.8 0.0078 1.7E-07 53.8 9.4 29 55-83 24-52 (178)
425 COG2074 2-phosphoglycerate kin 96.8 0.0016 3.4E-08 61.9 4.8 52 38-89 65-119 (299)
426 COG2274 SunT ABC-type bacterio 96.8 0.0025 5.5E-08 69.2 7.2 28 55-82 495-522 (709)
427 PF01745 IPT: Isopentenyl tran 96.8 0.0015 3.2E-08 60.8 4.6 39 61-99 3-41 (233)
428 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0056 1.2E-07 55.4 8.3 76 55-133 21-100 (177)
429 PF07693 KAP_NTPase: KAP famil 96.8 0.016 3.5E-07 56.3 12.2 37 50-86 11-47 (325)
430 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0048 1E-07 60.9 8.4 29 54-82 91-119 (316)
431 PLN02199 shikimate kinase 96.8 0.0026 5.7E-08 62.0 6.3 33 59-91 102-134 (303)
432 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0051 1.1E-07 54.9 7.7 29 55-83 22-50 (173)
433 COG0606 Predicted ATPase with 96.8 0.00079 1.7E-08 69.0 2.8 47 35-82 175-221 (490)
434 PRK13975 thymidylate kinase; P 96.8 0.0025 5.3E-08 57.6 5.8 28 60-87 3-30 (196)
435 PRK13900 type IV secretion sys 96.8 0.0022 4.7E-08 63.7 5.8 71 57-131 158-244 (332)
436 PRK10867 signal recognition pa 96.8 0.01 2.2E-07 61.0 10.9 37 57-93 98-138 (433)
437 PRK14529 adenylate kinase; Pro 96.8 0.0012 2.5E-08 62.1 3.5 36 61-98 2-37 (223)
438 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0037 8E-08 54.3 6.5 75 55-134 22-100 (144)
439 PRK04841 transcriptional regul 96.7 0.046 9.9E-07 60.6 16.6 34 57-91 30-63 (903)
440 TIGR00064 ftsY signal recognit 96.7 0.0068 1.5E-07 58.5 8.8 36 57-92 70-108 (272)
441 PRK05480 uridine/cytidine kina 96.7 0.0019 4.2E-08 59.2 4.8 28 57-84 4-31 (209)
442 PRK05439 pantothenate kinase; 96.7 0.0021 4.5E-08 63.3 5.3 39 46-84 73-111 (311)
443 KOG1051 Chaperone HSP104 and r 96.7 0.0044 9.6E-08 68.3 8.2 136 60-221 209-363 (898)
444 cd03246 ABCC_Protease_Secretio 96.7 0.014 3.1E-07 51.9 10.3 29 55-83 24-52 (173)
445 COG4088 Predicted nucleotide k 96.7 0.0028 6.1E-08 58.7 5.7 24 62-85 4-27 (261)
446 cd03214 ABC_Iron-Siderophores_ 96.7 0.0088 1.9E-07 53.6 8.9 29 55-83 21-49 (180)
447 TIGR01613 primase_Cterm phage/ 96.7 0.0059 1.3E-07 59.7 8.3 69 54-133 71-139 (304)
448 cd00071 GMPK Guanosine monopho 96.7 0.0068 1.5E-07 52.3 7.6 25 62-86 2-26 (137)
449 PRK05986 cob(I)alamin adenolsy 96.7 0.0054 1.2E-07 56.2 7.2 74 60-133 23-126 (191)
450 COG4178 ABC-type uncharacteriz 96.7 0.0079 1.7E-07 63.8 9.4 28 55-82 415-442 (604)
451 PF09848 DUF2075: Uncharacteri 96.7 0.0027 5.8E-08 63.3 5.7 23 61-83 3-25 (352)
452 PRK08099 bifunctional DNA-bind 96.7 0.0031 6.8E-08 64.1 6.3 31 59-89 219-249 (399)
453 TIGR02655 circ_KaiC circadian 96.7 0.009 1.9E-07 62.3 9.6 39 54-92 16-58 (484)
454 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0028 6E-08 60.9 5.2 68 61-131 82-158 (264)
455 cd03287 ABC_MSH3_euk MutS3 hom 96.6 0.015 3.2E-07 54.6 9.9 26 56-81 28-53 (222)
456 PF14516 AAA_35: AAA-like doma 96.6 0.016 3.5E-07 57.5 10.7 39 58-96 30-71 (331)
457 PRK10078 ribose 1,5-bisphospho 96.6 0.0021 4.5E-08 58.1 4.0 30 60-89 3-32 (186)
458 TIGR00708 cobA cob(I)alamin ad 96.6 0.0071 1.5E-07 54.6 7.3 72 62-133 8-108 (173)
459 COG3839 MalK ABC-type sugar tr 96.6 0.0058 1.3E-07 60.7 7.3 26 58-83 28-53 (338)
460 PTZ00202 tuzin; Provisional 96.6 0.015 3.2E-07 59.8 10.3 46 48-93 275-320 (550)
461 PF00485 PRK: Phosphoribulokin 96.6 0.0019 4E-08 58.8 3.5 25 61-85 1-25 (194)
462 TIGR03499 FlhF flagellar biosy 96.6 0.013 2.7E-07 56.9 9.3 36 58-93 193-233 (282)
463 TIGR02655 circ_KaiC circadian 96.6 0.0054 1.2E-07 63.9 7.2 79 54-136 258-367 (484)
464 KOG2543 Origin recognition com 96.6 0.022 4.9E-07 57.1 11.0 92 44-135 15-128 (438)
465 PF08423 Rad51: Rad51; InterP 96.5 0.0078 1.7E-07 57.6 7.7 83 54-136 33-147 (256)
466 KOG0058 Peptide exporter, ABC 96.5 0.0073 1.6E-07 64.7 8.1 29 54-82 489-517 (716)
467 PRK13851 type IV secretion sys 96.5 0.0033 7.2E-08 62.7 5.1 72 56-131 159-245 (344)
468 TIGR02322 phosphon_PhnN phosph 96.5 0.0023 5E-08 57.1 3.7 25 61-85 3-27 (179)
469 TIGR00235 udk uridine kinase. 96.5 0.0023 5E-08 58.8 3.7 28 58-85 5-32 (207)
470 cd02022 DPCK Dephospho-coenzym 96.5 0.0026 5.7E-08 57.2 4.0 28 62-90 2-29 (179)
471 TIGR00554 panK_bact pantothena 96.5 0.0042 9.1E-08 60.6 5.6 38 47-84 50-87 (290)
472 PRK13808 adenylate kinase; Pro 96.5 0.0024 5.1E-08 63.4 3.9 33 62-96 3-35 (333)
473 KOG0480 DNA replication licens 96.5 0.0034 7.3E-08 66.2 5.1 139 60-221 379-542 (764)
474 COG5245 DYN1 Dynein, heavy cha 96.5 0.013 2.8E-07 67.0 9.8 175 56-252 1491-1689(3164)
475 PF02367 UPF0079: Uncharacteri 96.5 0.0029 6.3E-08 54.0 3.8 35 57-91 13-47 (123)
476 COG5271 MDN1 AAA ATPase contai 96.5 0.06 1.3E-06 62.7 14.7 158 62-243 891-1066(4600)
477 TIGR03263 guanyl_kin guanylate 96.5 0.0022 4.8E-08 57.1 3.1 26 60-85 2-27 (180)
478 TIGR00017 cmk cytidylate kinas 96.5 0.0033 7.1E-08 58.7 4.4 30 60-89 3-32 (217)
479 PF13481 AAA_25: AAA domain; P 96.4 0.01 2.2E-07 53.3 7.4 26 58-83 31-56 (193)
480 cd02024 NRK1 Nicotinamide ribo 96.4 0.0028 6.2E-08 57.9 3.7 28 62-89 2-30 (187)
481 PRK09825 idnK D-gluconate kina 96.4 0.0035 7.6E-08 56.5 4.3 33 60-94 4-36 (176)
482 PRK08356 hypothetical protein; 96.4 0.0036 7.7E-08 57.1 4.4 32 60-94 6-37 (195)
483 COG1116 TauB ABC-type nitrate/ 96.4 0.0078 1.7E-07 57.1 6.6 29 55-83 25-53 (248)
484 PLN02165 adenylate isopentenyl 96.4 0.0034 7.4E-08 62.2 4.4 33 59-91 43-75 (334)
485 cd01125 repA Hexameric Replica 96.4 0.079 1.7E-06 49.7 13.5 21 62-82 4-24 (239)
486 PRK11174 cysteine/glutathione 96.4 0.017 3.7E-07 61.3 9.9 29 55-83 372-400 (588)
487 PRK00091 miaA tRNA delta(2)-is 96.4 0.0038 8.3E-08 61.3 4.6 35 58-92 3-37 (307)
488 PRK11160 cysteine/glutathione 96.4 0.013 2.8E-07 62.3 8.9 29 55-83 362-390 (574)
489 cd02028 UMPK_like Uridine mono 96.4 0.0038 8.3E-08 56.3 4.2 34 62-95 2-38 (179)
490 COG0645 Predicted kinase [Gene 96.4 0.011 2.3E-07 53.1 6.9 66 60-125 2-80 (170)
491 PF05970 PIF1: PIF1-like helic 96.4 0.0069 1.5E-07 60.8 6.4 29 57-85 20-48 (364)
492 TIGR01663 PNK-3'Pase polynucle 96.4 0.0074 1.6E-07 63.5 6.8 59 57-126 367-425 (526)
493 cd03239 ABC_SMC_head The struc 96.4 0.018 3.9E-07 52.0 8.5 26 61-86 24-49 (178)
494 PRK00023 cmk cytidylate kinase 96.4 0.0034 7.4E-08 58.9 3.9 31 59-89 4-34 (225)
495 COG0467 RAD55 RecA-superfamily 96.4 0.0052 1.1E-07 58.5 5.2 40 54-93 18-60 (260)
496 PRK14730 coaE dephospho-CoA ki 96.4 0.0039 8.4E-08 57.2 4.2 29 61-89 3-31 (195)
497 PRK14021 bifunctional shikimat 96.4 0.0049 1.1E-07 65.2 5.5 32 61-92 8-39 (542)
498 TIGR00959 ffh signal recogniti 96.3 0.03 6.5E-07 57.5 10.9 36 58-93 98-137 (428)
499 PRK10416 signal recognition pa 96.3 0.015 3.3E-07 57.4 8.6 36 57-92 112-150 (318)
500 PRK14737 gmk guanylate kinase; 96.3 0.0036 7.8E-08 57.0 3.8 26 58-83 3-28 (186)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=8.8e-80 Score=600.47 Aligned_cols=318 Identities=80% Similarity=1.267 Sum_probs=306.1
Q ss_pred CCCCccchhhccccccccccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHH
Q 017204 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA 80 (375)
+|.|||++|+++++|+ .++++|+|++++|||+|+|+|++..|++|||+..+|+++|+|+|||||||||||++|++||
T Consensus 93 ~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA 169 (413)
T PLN00020 93 FGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVF 169 (413)
T ss_pred ccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 4689999999999999 7788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHH-HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 017204 81 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 159 (375)
Q Consensus 81 ~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~-~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~ll 159 (375)
+++|++|+.+++++|.++|+||++++||++|+.|.+.+ ++.+||||||||||+++++|+ .++.++++|++..+||+++
T Consensus 170 ~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV~~tLLnl~ 248 (413)
T PLN00020 170 KKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMVNGTLMNIA 248 (413)
T ss_pred HHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997777 478999999999999999997 5678899999999999999
Q ss_pred cCCccccCCCcc-ccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCC
Q 017204 160 DNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTF 238 (375)
Q Consensus 160 d~~~~v~l~~~~-~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf 238 (375)
|+|++|+++|.| ..+...+|+||+|||+|+.|||||+|+||||+++++|+.++|.+|++.+++..+++..++.++++.|
T Consensus 249 D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f 328 (413)
T PLN00020 249 DNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSREDVVKLVDTF 328 (413)
T ss_pred cCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcC
Confidence 999999999998 4566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCCCCCCccCHHHHHHhHHHHHHhhhhhhhcchHHHHh
Q 017204 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318 (375)
Q Consensus 239 ~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~~~~e~~~~~~~~l~~~~l 318 (375)
+|++||||+|||+++|+++|++||.++|.|++++.|+++++++|.|++|.+|++.|+++|+++++||++|.+++|+++||
T Consensus 329 ~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~~~l~~~y~ 408 (413)
T PLN00020 329 PGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKRVQLSDEYL 408 (413)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhc
Q 017204 319 SEAA 322 (375)
Q Consensus 319 ~~~~ 322 (375)
++++
T Consensus 409 ~~~~ 412 (413)
T PLN00020 409 KNAA 412 (413)
T ss_pred Hhcc
Confidence 9865
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=411.58 Aligned_cols=274 Identities=27% Similarity=0.392 Sum_probs=246.2
Q ss_pred CCCCccchhhccccccccccccccccccccccCCchhHHHHHHHHHHHhhhhCC-CCCCCcEEEEEcCCCchHHHHHHHH
Q 017204 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELV 79 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~-~~~~p~glLL~GPPGtGKT~LA~aI 79 (375)
+|.+++-+|...+.|.+++.++++|+++.+.+|+.++|+|++.+|+.+|++.++ |+++|+|+|||||||||||++|++|
T Consensus 107 Im~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~V 186 (388)
T KOG0651|consen 107 IMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAV 186 (388)
T ss_pred hhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHH
Confidence 367899999999999999999999999999999999999999999999999877 9999999999999999999999999
Q ss_pred HHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 017204 80 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 159 (375)
Q Consensus 80 A~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~ll 159 (375)
|..+|++|+.++++++.++|+||+.++||+.|++| +...|||||+||||+++++|. ++.++++++++.|||+++
T Consensus 187 aa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA----~~~~pciifmdeiDAigGRr~--se~Ts~dreiqrTLMeLl 260 (388)
T KOG0651|consen 187 AATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA----REVIPCIIFMDEIDAIGGRRF--SEGTSSDREIQRTLMELL 260 (388)
T ss_pred HHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH----hhhCceEEeehhhhhhccEEe--ccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999994 889999999999999999
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHH
Q 017204 160 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVK 233 (375)
Q Consensus 160 d~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~ 233 (375)
+ +++|+ ....+|.+|+|||+|+.|||||+||||+|+++| +|+...|..|++.|... ..++.+.|.+
T Consensus 261 n-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK 332 (388)
T KOG0651|consen 261 N-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILK 332 (388)
T ss_pred H-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHH
Confidence 9 76666 888999999999999999999999999999999 78999999987666533 2455556666
Q ss_pred HhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCCCCCCccCHHHHHHhHHHHHHhhhhhhhcch
Q 017204 234 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 313 (375)
Q Consensus 234 lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~~~~e~~~~~~~~l 313 (375)
++++|.|+++... ..+ .+.|..+..+.+.++|.+..+++||.+++++++
T Consensus 333 ~~d~f~gad~rn~------------------------------~tE-ag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle~ 381 (388)
T KOG0651|consen 333 LVDGFNGADLRNV------------------------------CTE-AGMFAIPEERDEVLHEDFMKLVRKQADAKKLEL 381 (388)
T ss_pred HHhccChHHHhhh------------------------------ccc-ccccccchhhHHHhHHHHHHHHHHHHHHHHhhh
Confidence 6666666553110 011 247888899999999999999999999999999
Q ss_pred HHHHhc
Q 017204 314 ADKYLS 319 (375)
Q Consensus 314 ~~~~l~ 319 (375)
+..|++
T Consensus 382 ~~~Y~~ 387 (388)
T KOG0651|consen 382 SLDYKK 387 (388)
T ss_pred hhhhcc
Confidence 999984
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-48 Score=373.91 Aligned_cols=179 Identities=24% Similarity=0.348 Sum_probs=168.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..|++||+|||||||||||||+||+|+|++.++.|+.+.+|+|..||+|++.+++|++|+.| +..+||||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEID 254 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEID 254 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechh
Confidence 46999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
+++++|. ...+..++.|+.|+|++|. ||||+ ....+|-||++|||++.||||||||||||+.|+ +|+.
T Consensus 255 AIg~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 255 AIGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred hhhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 9999986 3345578999999999999 99999 788999999999999999999999999999999 7999
Q ss_pred HHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHH
Q 017204 211 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 211 ~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~ 245 (375)
+.|.+|++.|.++ .+++++.|++++++||||+|..
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH
Confidence 9999999999876 4688899999999999999863
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=379.09 Aligned_cols=264 Identities=22% Similarity=0.298 Sum_probs=210.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCC
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 102 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge 102 (375)
+|+++=+-..|...+++-++..+.+.-+ +..|+..|.|||||||||||||+||+|+|+|.|++|+.|++++|+++|+||
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 4466655556677777777777776654 467999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 182 (375)
+|+.||++|.+| +.++||||||||||+++++|+. ....+..++++|+|- +|||. +.+.+|+||
T Consensus 589 SErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~-~~s~~s~RvvNqLLt---------ElDGl---~~R~gV~vi 651 (802)
T KOG0733|consen 589 SERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSD-EGSSVSSRVVNQLLT---------ELDGL---EERRGVYVI 651 (802)
T ss_pred HHHHHHHHHHHh----hcCCCeEEEecchhhcCcccCC-CCchhHHHHHHHHHH---------Hhccc---ccccceEEE
Confidence 999999999999 9999999999999999999973 336777888887773 44566 899999999
Q ss_pred EEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC--C----CCCCHHHHHHHhc--CCChhhHHHHHHHHhh
Q 017204 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR--N----DNVADDDIVKLVD--TFPGQSIDFFGALRAR 252 (375)
Q Consensus 183 ~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~--~----~~v~~~~la~lt~--gf~gadl~~~~al~~~ 252 (375)
++||||+.||||+|||||||+.+| +|+.++|.+|++.+.+ + .+++.++|++.+. ||+|+||.. |...
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa---Lvre 728 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA---LVRE 728 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH---HHHH
Confidence 999999999999999999999999 8999999999999988 2 4778889999988 999999963 3333
Q ss_pred hhHHHHHHHHHhccCc--chhhhhhcCcCCCCCCCCCccCHHHHHHhHHHH---HHhhhhhhhcchHHHH
Q 017204 253 VYDDEVRKWISGVGVG--SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKY 317 (375)
Q Consensus 253 ~~~~~i~~~i~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~e~~~~~~~~l~~~~ 317 (375)
..-.++++-+.+.... .+... ..+..+|..++-+|-..+ +.+++...+-++...|
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~----------~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~ 788 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVR----------SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR 788 (802)
T ss_pred HHHHHHHHHHhhccccCccccee----------eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence 3333455444433211 11110 012345667777777665 6788877777776665
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=366.54 Aligned_cols=222 Identities=20% Similarity=0.325 Sum_probs=181.2
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
+..+.+|+++=|-..++..+.+.+......... ...|+.+|+|||||||||||||++|+++|++++++|+.+++++|.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 344555677655445555554444444333221 2459999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
+|+|++|+.||++|.+| ++.+||||||||||++++.|+++ ...+.+++++++| + +|||+ +...
T Consensus 507 k~vGeSEr~ir~iF~kA----R~~aP~IiFfDEiDsi~~~R~g~-~~~v~~RVlsqLL-t--------EmDG~---e~~k 569 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKA----RQVAPCIIFFDEIDALAGSRGGS-SSGVTDRVLSQLL-T--------EMDGL---EALK 569 (693)
T ss_pred HhcCchHHHHHHHHHHH----hhcCCeEEehhhHHhHhhccCCC-ccchHHHHHHHHH-H--------Hcccc---cccC
Confidence 99999999999999999 99999999999999999999743 3377888887655 2 44477 7889
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHHHHHHh
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRA 251 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~~al~~ 251 (375)
+|+||++||||+.||+||+||||||+.+| +|+.+.|.+|++.++++. .++.+.|++.|+||||+||. ++|.
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~---~lCq 646 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV---AVCQ 646 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH---HHHH
Confidence 99999999999999999999999999999 899999999999998764 56677899999999999995 4454
Q ss_pred hhhHHHHHH
Q 017204 252 RVYDDEVRK 260 (375)
Q Consensus 252 ~~~~~~i~~ 260 (375)
.+..-++++
T Consensus 647 ~A~~~a~~e 655 (693)
T KOG0730|consen 647 EAALLALRE 655 (693)
T ss_pred HHHHHHHHH
Confidence 444333333
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-44 Score=370.54 Aligned_cols=270 Identities=19% Similarity=0.308 Sum_probs=219.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
+|+++=|-..++..++|.+........|...|++...|||||||||||||++|||||.|+.++|+.|++++|.++|+|++
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 44554444455566666666555555666679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeeecccccccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 017204 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182 (375)
Q Consensus 104 ~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 182 (375)
|+++|++|++| +..+||||||||+|+++++|| .+.+..|.+++|.|+|. ++||+... ....|+||
T Consensus 750 E~NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA---------ELDgls~~-~s~~VFVi 815 (953)
T KOG0736|consen 750 EENVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA---------ELDGLSDS-SSQDVFVI 815 (953)
T ss_pred HHHHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH---------HhhcccCC-CCCceEEE
Confidence 99999999999 999999999999999999998 45667899999999885 34466332 56789999
Q ss_pred EEeCCCCCCChhhcCCCcceEEEe--C-CCHHHHHHhhhhhcCC----CCCCHHHHHHHh-cCCChhhHHHHHHHHhhhh
Q 017204 183 VTGNDFSTLYAPLIRDGRMEKFYW--A-PTREDRIGVCKGIFRN----DNVADDDIVKLV-DTFPGQSIDFFGALRARVY 254 (375)
Q Consensus 183 ~TTN~~~~Ld~ALlR~gRfd~~i~--~-P~~~~R~~Il~~~l~~----~~v~~~~la~lt-~gf~gadl~~~~al~~~~~ 254 (375)
++||||+.|||||+||||||+.+| + -+.+.+..|+++..++ ++++..+||+.+ ..|+|||+ .+|++.+.
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~ 892 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAM 892 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHH
Confidence 999999999999999999999999 3 4667789999888765 467777888776 58999997 68899888
Q ss_pred HHHHHHHHHhccCcchhhhhhcCcCCCCCCCCCccCHHHHHHhHHHH---HHhhhhhhhcchHHHH
Q 017204 255 DDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKY 317 (375)
Q Consensus 255 ~~~i~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~e~~~~~~~~l~~~~ 317 (375)
-.++++.++.+..+.+.. ....-....++.++++++.+.+ +.|||...+..+..+|
T Consensus 893 l~AikR~i~~ie~g~~~~-------~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISE-------EEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred HHHHHHHHHHhhhccccc-------cccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 888988888776554443 1111234578999999999887 5777776666555554
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=353.41 Aligned_cols=291 Identities=18% Similarity=0.281 Sum_probs=234.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-ceEEeccCccccCCCCChHHHHHHHHHHHHHHHH----hCCceeee
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLM 127 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~-~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~----~~~p~IL~ 127 (375)
..|++.-+|||||||||||||++||.|.+.+++ .+-.++++++.+||+|++|.+||.+|..|.+.-+ .+.-.||+
T Consensus 250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 569999999999999999999999999999987 5778999999999999999999999999976655 44567999
Q ss_pred ecccccccCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe
Q 017204 128 INDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 206 (375)
Q Consensus 128 iDEiD~i~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~ 206 (375)
|||||++|.+|++.. ...|.++.|+|+|. .+||. +...+|+||+.|||.+.||+||||||||++.++
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 999999999997432 35577778887773 44555 888999999999999999999999999999999
Q ss_pred --CCCHHHHHHhhhhhcC--------CCCCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhc-----cCcchh
Q 017204 207 --APTREDRIGVCKGIFR--------NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-----GVGSIG 271 (375)
Q Consensus 207 --~P~~~~R~~Il~~~l~--------~~~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~-----~~~~~~ 271 (375)
+|+++.|.+|++.|.. ..+++.++||++|..||||+|+- -+|++..- ++.+.++.- ..+++.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleg--lVksA~S~-A~nR~vk~~~~~~~~~~~~e 474 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEG--LVKSAQSF-AMNRHVKAGGKVEVDPVAIE 474 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHH--HHHHHHHH-HHHhhhccCcceecCchhhh
Confidence 8999999999988865 35899999999999999999983 34444333 234444321 122222
Q ss_pred hhhhcC-------cCCCCCCCCCcc---------------CHHHHHHhHHHHHHhhhhhhhcchHHHHhchhccCCchhh
Q 017204 272 KSLVNS-------KEAAPTFEQPRM---------------TMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANED 329 (375)
Q Consensus 272 ~~l~~~-------~~~~~~~~~~~~---------------~~~~ll~~~~~~~~e~~~~~~~~l~~~~l~~~~l~~~~~~ 329 (375)
..-+++ .+-.|.|+.... .+..+++.|.+++++-.+..+..++..++.|++.. ++|
T Consensus 475 ~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~s--GKT 552 (744)
T KOG0741|consen 475 NLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGS--GKT 552 (744)
T ss_pred heeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCC--ChH
Confidence 211222 134677755333 45778889999999999999999999999997655 899
Q ss_pred hhhhcchhhHhhhhcCCCCCCCCCCcccccCCCCcc
Q 017204 330 AIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR 365 (375)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
|+ ++++|..|+|||+++|+|.+..-|-.+|+
T Consensus 553 aL-----AA~iA~~S~FPFvKiiSpe~miG~sEsaK 583 (744)
T KOG0741|consen 553 AL-----AAKIALSSDFPFVKIISPEDMIGLSESAK 583 (744)
T ss_pred HH-----HHHHHhhcCCCeEEEeChHHccCccHHHH
Confidence 98 89999999999999999988876665543
No 8
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=347.18 Aligned_cols=252 Identities=21% Similarity=0.272 Sum_probs=193.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..|.+.|+||||.||||||||+||||||.|.|++|+..+++++...|+|...+.||++|..| ++.+||||||||||
T Consensus 331 rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiD 406 (752)
T KOG0734|consen 331 RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEID 406 (752)
T ss_pred hccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechh
Confidence 45899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
++.++|....+ ...+|.++|+| |+|||+ ..+.+|+||++||.|+.||+||+||||||+.+. .||.
T Consensus 407 avG~kR~~~~~-~y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 407 AVGGKRNPSDQ-HYAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred hhcccCCccHH-HHHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 99999974333 25666677666 367788 888899999999999999999999999999999 6999
Q ss_pred HHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHHH---HHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCC
Q 017204 211 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFG---ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 283 (375)
Q Consensus 211 ~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~~---al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 283 (375)
..|.+|++.|+.+ .++|...||+-|.||+|+||+.+. |+++..-.+. -+.-...|---.+++-..+....
T Consensus 474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---~VtM~~LE~akDrIlMG~ERks~ 550 (752)
T KOG0734|consen 474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE---MVTMKHLEFAKDRILMGPERKSM 550 (752)
T ss_pred ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc---cccHHHHhhhhhheeeccccccc
Confidence 9999999888764 578888999999999999998653 3333221100 00000111111223222222233
Q ss_pred C-CCCccCHHHHHHhHHHHHHh-hhhhhhcchHHHHhchhccC
Q 017204 284 F-EQPRMTMEKLLEYGNMIVQE-QENVKRVQLADKYLSEAALG 324 (375)
Q Consensus 284 ~-~~~~~~~~~ll~~~~~~~~e-~~~~~~~~l~~~~l~~~~l~ 324 (375)
+ ....-++.++||.||.+|.- -........+....||.+||
T Consensus 551 ~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG 593 (752)
T KOG0734|consen 551 VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLG 593 (752)
T ss_pred ccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCcccc
Confidence 3 23456789999999998754 22223344445566676654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-41 Score=340.91 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=170.2
Q ss_pred HHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH
Q 017204 41 KLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119 (375)
Q Consensus 41 ~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~ 119 (375)
.++.|+.. +.+...|+.||+|+|||||||||||+||+|||.++|++|+.++++++.+++.|++|+.||++|..| +
T Consensus 204 ~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A----~ 279 (802)
T KOG0733|consen 204 ELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA----K 279 (802)
T ss_pred HHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH----h
Confidence 34444332 234567999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-CCCCceEEEEeCCCCCCChhhcCC
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGNDFSTLYAPLIRD 198 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-~~~~V~VI~TTN~~~~Ld~ALlR~ 198 (375)
..+|||+||||||++.++|. ..+.....++|.| |+..+| +..... ....|+||+|||||+.|||||+|+
T Consensus 280 ~~aPcivFiDeIDAI~pkRe-~aqreMErRiVaQ-Llt~mD--------~l~~~~~~g~~VlVIgATnRPDslDpaLRRa 349 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDAITPKRE-EAQREMERRIVAQ-LLTSMD--------ELSNEKTKGDPVLVIGATNRPDSLDPALRRA 349 (802)
T ss_pred ccCCeEEEeecccccccchh-hHHHHHHHHHHHH-HHHhhh--------cccccccCCCCeEEEecCCCCcccCHHHhcc
Confidence 99999999999999999997 3455555566654 446666 332222 246799999999999999999999
Q ss_pred CcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHH
Q 017204 199 GRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 263 (375)
Q Consensus 199 gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~ 263 (375)
||||+.|. +|++.+|.+||+.+++. .+++...||++|.||.|+||.. |+..+..-+|++.++
T Consensus 350 GRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~A---L~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMA---LCREAAFVAIKRILD 417 (802)
T ss_pred ccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHH---HHHHHHHHHHHHHhh
Confidence 99999999 89999999999888764 4778889999999999999964 444444444555554
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=311.84 Aligned_cols=231 Identities=21% Similarity=0.230 Sum_probs=183.0
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G 101 (375)
+..++++.+-...+.-+.+.++..+.-+-+.....+|-+|||++||||||||+||+|||.|+|..|+.|+.+.|.|||-|
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRG 287 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRG 287 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhcc
Confidence 34455555555555555555555555444334444555999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCce
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVP 180 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~-~~V~ 180 (375)
++|++||-+|+.| +..+|++|||||||+++.+|++.+ .....+.+..-|+. ||||+...... ..|+
T Consensus 288 eSEKlvRlLFemA----RfyAPStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLv--------QmDG~~~t~e~~k~Vm 354 (491)
T KOG0738|consen 288 ESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLV--------QMDGVQGTLENSKVVM 354 (491)
T ss_pred chHHHHHHHHHHH----HHhCCceeehhhHHHHHhcCCCcc-chhHHHHHHHHHHH--------HhhccccccccceeEE
Confidence 9999999999999 999999999999999999998543 44445555555544 55577554444 5689
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHHHHHHhhhh
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVY 254 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~~al~~~~~ 254 (375)
|+++||-|+.||.||+| ||++.|+ +|+.+.|..+++..+.. ++++.++|+..++||+|+||.. +|..+.
T Consensus 355 VLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n---vCreAs 429 (491)
T KOG0738|consen 355 VLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN---VCREAS 429 (491)
T ss_pred EEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHH---HHHHHH
Confidence 99999999999999999 9999999 89999999998888764 5788899999999999999964 355555
Q ss_pred HHHHHHHHHhccCcch
Q 017204 255 DDEVRKWISGVGVGSI 270 (375)
Q Consensus 255 ~~~i~~~i~~~~~~~~ 270 (375)
...+|+.|.....+.+
T Consensus 430 m~~mRR~i~g~~~~ei 445 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPREI 445 (491)
T ss_pred HHHHHHHHhcCCcHHh
Confidence 5567887776654443
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=329.76 Aligned_cols=200 Identities=20% Similarity=0.309 Sum_probs=176.7
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
.-.++.+.|||||||||||||+||.++|..++..||.+++++|.+||+|.+|.++|.+|.+| +..+||||||||+|
T Consensus 695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFD 770 (952)
T ss_pred hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccc
Confidence 34788899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
+++++|| .....+.++.++|+|- ++||. +...+|.|+++|.||+.|||||+||||+|+.++ +|++
T Consensus 771 SiAPkRG-hDsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 771 SIAPKRG-HDSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCcccC-CCCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 9999997 4455678888887773 44566 778999999999999999999999999999999 8999
Q ss_pred HHHHHhhhhhcC----CCCCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhh
Q 017204 211 EDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272 (375)
Q Consensus 211 ~~R~~Il~~~l~----~~~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~ 272 (375)
.+|.+|++.+.. ..+++.+.+|.+|+||+||||. +|...+.-.++++|+.+.+.+....
T Consensus 838 ~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~p 900 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVVP 900 (952)
T ss_pred HHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccCC
Confidence 999999887654 4588899999999999999995 4455555667889999887555443
No 12
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=335.04 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=171.6
Q ss_pred ccccccccccCCchhHHHHHHHHHHHhhh--hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~~l--~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
..|.++.+-..++.++++ +++.+||.. ...|++.|+|+||+||||||||+||+|+|.|.|++|+.++++++...++
T Consensus 308 V~FkDVAG~deAK~El~E--~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELME--FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CccccccCcHHHHHHHHH--HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 445666666666666655 334455543 2569999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCC---CcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG---TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~---~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
|.....+|++|..| +..+||||||||||++++.|++ ........+.++|+| - +|||+ ....
T Consensus 386 g~~asrvr~lf~~a----r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll----~-----emDgf---~~~~ 449 (774)
T KOG0731|consen 386 GVGASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL----V-----EMDGF---ETSK 449 (774)
T ss_pred ccchHHHHHHHHHh----hccCCeEEEecccccccccccccccCCCChHHHHHHHHHH----H-----HhcCC---cCCC
Confidence 99999999999999 9999999999999999999852 122223334444444 3 77788 6668
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCCC-----HHHHHHHhcCCChhhHHHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFFG 247 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v~-----~~~la~lt~gf~gadl~~~~ 247 (375)
.|+|+++||+++.||+||+||||||+.+. +|+..+|.+|++.|+...+++ ...|+.+|.||+|+||.++.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 89999999999999999999999999999 899999999999998776553 44599999999999998753
No 13
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-38 Score=324.29 Aligned_cols=257 Identities=20% Similarity=0.235 Sum_probs=201.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.|.+.|+|+||+||||||||+||+++|.+.+++|+.+|+|++..+++|-+.+.+|++|.+| ++.+||||||||||+
T Consensus 178 lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiDA 253 (596)
T COG0465 178 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEIDA 253 (596)
T ss_pred cccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhhh
Confidence 3779999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 211 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~ 211 (375)
+...|+.+ ....+....|+|.+++- +|||+ ..+..|+||++||||+-+|+||+||||||+.+. .|+..
T Consensus 254 vGr~Rg~g--~GggnderEQTLNQlLv-----EmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~ 323 (596)
T COG0465 254 VGRQRGAG--LGGGNDEREQTLNQLLV-----EMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIK 323 (596)
T ss_pred cccccCCC--CCCCchHHHHHHHHHHh-----hhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchh
Confidence 99998632 33344455556655544 77788 677899999999999999999999999999999 79999
Q ss_pred HHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCC-CCCC
Q 017204 212 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQ 286 (375)
Q Consensus 212 ~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~-~~~~ 286 (375)
.|.+|++.|.+.. .++...|++.|.||+|+|+..+..-.+......-+.|+...+++.-..+++...++.+ .+.+
T Consensus 324 gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise 403 (596)
T COG0465 324 GREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISE 403 (596)
T ss_pred hHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccCh
Confidence 9999999888754 5667779999999999999865422222222222345555556555556665544433 4677
Q ss_pred CccCHHHHHHhHHHHHHhhhhh-hhcchHHHHhchhccC
Q 017204 287 PRMTMEKLLEYGNMIVQEQENV-KRVQLADKYLSEAALG 324 (375)
Q Consensus 287 ~~~~~~~ll~~~~~~~~e~~~~-~~~~l~~~~l~~~~l~ 324 (375)
......+.||+||.++...-.- ..+..+....++.+||
T Consensus 404 ~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG 442 (596)
T COG0465 404 AEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALG 442 (596)
T ss_pred hhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhc
Confidence 7788899999999998663222 2344444455555544
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-37 Score=283.22 Aligned_cols=180 Identities=24% Similarity=0.347 Sum_probs=162.1
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
+.-|+.||+|+|||||||||||+||+|+|+...+.|+.+.++++..+|.|+..+++|++|+.| +.++|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 456999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|+++.+|- ...+..++.++..|++++. ||+|+ ....+|-||++||+.+.|||||+||||+|+.|+ +|+
T Consensus 258 daiatkrf--daqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRF--DAQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhc--cccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 99998875 2345677899999999999 88888 777899999999999999999999999999999 688
Q ss_pred HHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHH
Q 017204 210 REDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 210 ~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~ 245 (375)
+.++.-++..+..+ +.++.+++...-+..||++|..
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~a 367 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINA 367 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHH
Confidence 88887777666554 4667777888889999999863
No 15
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-37 Score=290.92 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=181.9
Q ss_pred cccccccccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 12 SYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
+...++++--+| +++-+-..-+.++.+.++..+.-+.+...+-+|-+|||||||||||||.||+|+|.+.+..|+.|+
T Consensus 121 sAIv~EKPNVkW--sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKW--SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCch--hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 333444444444 777777777888888888888777777777778899999999999999999999999999999999
Q ss_pred cCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcc
Q 017204 92 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171 (375)
Q Consensus 92 ~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~ 171 (375)
.++|.++|.|+++++++.+|+.| +.++|+||||||||+++++|+ .++.....++-..+| |||+|.
T Consensus 199 SSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfL---------VQMqGV- 263 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFL---------VQMQGV- 263 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHH---------Hhhhcc-
Confidence 99999999999999999999999 999999999999999999997 344555667777666 466666
Q ss_pred ccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC--C---CCHHHHHHHhcCCChhhHH
Q 017204 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--N---VADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 172 ~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~--~---v~~~~la~lt~gf~gadl~ 244 (375)
.....+|+|+++||-|+.||.|++| ||++.|| +|+...|..+++.|+.+. . .+...+++.|+||||+||.
T Consensus 264 -G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 264 -GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred -ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 2456789999999999999999999 9999999 799999999999999875 2 3455699999999999986
Q ss_pred H
Q 017204 245 F 245 (375)
Q Consensus 245 ~ 245 (375)
.
T Consensus 341 i 341 (439)
T KOG0739|consen 341 I 341 (439)
T ss_pred E
Confidence 3
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=280.61 Aligned_cols=180 Identities=20% Similarity=0.299 Sum_probs=164.6
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
...|+..|+|+|||||||||||+||+++|....+.|+.+++++|..+|+|+..+++|++|-.| +.++|+|||.|||
T Consensus 174 ~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmdei 249 (404)
T KOG0728|consen 174 EALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEI 249 (404)
T ss_pred HhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeecc
Confidence 356999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|++...|..+ ....+..++.+.++++. |++|+ +...++-||++||+.+-|||||+||||.|+.|+ +|+
T Consensus 250 dsigs~r~e~--~~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 250 DSIGSSRVES--GSGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred cccccccccC--CCCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 9999888632 22356778888888888 88898 888999999999999999999999999999999 689
Q ss_pred HHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 210 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
.+.|.+|++.|.++. +++...|+....|.||++...
T Consensus 320 e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~ 359 (404)
T KOG0728|consen 320 EEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKG 359 (404)
T ss_pred HHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhh
Confidence 999999999998764 677888999999999998753
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=282.26 Aligned_cols=179 Identities=22% Similarity=0.325 Sum_probs=161.3
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..|+.||+|+|||||||||||++|+|+|+..++.|+.+-+|+|..+|+|+..+++|++|+.| +..+-|||||||||
T Consensus 205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeid 280 (435)
T KOG0729|consen 205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID 280 (435)
T ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999 98999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
++.+.|-+.. ...+..++.+.++++. |++|+ ..+++|-|+++||+|+.|||||+||||+|+.++ +|+.
T Consensus 281 aiggarfddg--~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 281 AIGGARFDDG--AGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred cccCccccCC--CCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence 9998875221 2234567778888888 88898 889999999999999999999999999999999 8999
Q ss_pred HHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 211 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 211 ~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
+.|..|++.|.+.. ++-++.|++++..-+|++|.-
T Consensus 351 egrt~i~kihaksmsverdir~ellarlcpnstgaeirs 389 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRS 389 (435)
T ss_pred cccceeEEEeccccccccchhHHHHHhhCCCCcchHHHH
Confidence 99999999988765 455777999999999999853
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=284.91 Aligned_cols=180 Identities=21% Similarity=0.333 Sum_probs=164.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
.-|+++|+|++|||+||||||+||+|+|+...+.|+.+-+++|..+|.|+..+++|++|+.| ...+|+|+||||||
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId 288 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID 288 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
++..+|.+ ..+...+.++++++++|. |++|+ ..+..|-||++||+.+.|||||+||||.|+.|. .|+.
T Consensus 289 AiGtKRyd--s~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 289 AIGTKRYD--SNSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hhcccccc--CCCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 99998862 234456888999999999 99999 678889999999999999999999999999999 7999
Q ss_pred HHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHH
Q 017204 211 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 211 ~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~ 246 (375)
..+..|+..|... ..++.+++..--+.+||+||..+
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhcccccccccHHHH
Confidence 9999999888764 47778888888899999999754
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=281.68 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=165.2
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
...|++||+|+|+|||||||||++|+|+|.+.+..|+.+.++.|..+|+|+..+++|+.|.-| +..+|+||||||+
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDEl 273 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDEL 273 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEech
Confidence 457999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|++..+|. .+....++.++.+.+++|. |++|+ +...+|-||++||+.+-|||||+|.||+|+.|+ .|+
T Consensus 274 DAIGtKRf--DSek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 274 DAIGTKRF--DSEKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred hhhccccc--cccccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 99998886 2344567889999999999 88899 888899999999999999999999999999999 699
Q ss_pred HHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHH
Q 017204 210 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~ 244 (375)
.+.|.+|++.|.++. +++++++++-|+.|.|+...
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence 999999999988764 67788999999999998764
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=302.93 Aligned_cols=206 Identities=21% Similarity=0.330 Sum_probs=166.1
Q ss_pred cccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCC
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 102 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge 102 (375)
+++.+-+...++..+.+.+........+ ...++++|+|+|||||||||||+||+++|++++.+|+.++++++.++|+|+
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGe 319 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGE 319 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccch
Confidence 3344444334444444444433333322 234899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 182 (375)
++++|+.+|..| ++.+||||||||+|+++..|+.+ ......+.++++| ..++ +. +...+|+||
T Consensus 320 sek~ir~~F~~A----~~~~p~iiFiDEiDs~~~~r~~~-~~~~~~r~~~~lL-~~~d--------~~---e~~~~v~vi 382 (494)
T COG0464 320 SEKNIRELFEKA----RKLAPSIIFIDEIDSLASGRGPS-EDGSGRRVVGQLL-TELD--------GI---EKAEGVLVI 382 (494)
T ss_pred HHHHHHHHHHHH----HcCCCcEEEEEchhhhhccCCCC-CchHHHHHHHHHH-HHhc--------CC---CccCceEEE
Confidence 999999999999 89999999999999999998632 2222245555444 3333 55 677889999
Q ss_pred EEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC------CCCCHHHHHHHhcCCChhhHHHH
Q 017204 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN------DNVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 183 ~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~------~~v~~~~la~lt~gf~gadl~~~ 246 (375)
+|||+|+.||+|++||||||+.++ +|+.++|.+|++.++.. .+++.+.+++++++|+|+||..+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 999999999999999999999999 79999999999999983 25677789999999999999754
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.2e-34 Score=295.82 Aligned_cols=283 Identities=17% Similarity=0.196 Sum_probs=205.4
Q ss_pred ccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc----------eEEec
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMS 91 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~----------~i~vs 91 (375)
.+|+++.+-......+.+.+....... .+...|+++|+|+|||||||||||++|+++|++++.+ |+.++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 334555444444444444444333322 2345689999999999999999999999999998654 66788
Q ss_pred cCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcc
Q 017204 92 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171 (375)
Q Consensus 92 ~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~ 171 (375)
++++.++|+|++++.++.+|..|.+.+..+.||||||||+|+++.+|+.+......+++++++| +.+| +.
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL-~~LD--------gl- 328 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL-SELD--------GV- 328 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH-HHhc--------cc-
Confidence 9999999999999999999999966666778999999999999988864333344445555443 4444 54
Q ss_pred ccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC-CCCHHHHHHHhcCCChhhHHHHHH
Q 017204 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDFFGA 248 (375)
Q Consensus 172 ~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~-~v~~~~la~lt~gf~gadl~~~~a 248 (375)
...++|+||+|||+++.|||||+||||||+.|+ .|+.++|.+|++.++... .+ ..++ ....|++++++..+
T Consensus 329 --~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l-~~~~g~~~a~~~al-- 402 (512)
T TIGR03689 329 --ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL-DADL-AEFDGDREATAAAL-- 402 (512)
T ss_pred --ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc-hHHH-HHhcCCCHHHHHHH--
Confidence 445789999999999999999999999999988 899999999999998753 34 3334 44689999988643
Q ss_pred HHhhhhHHHH-----HHHHH--------------hccCcchhhhhhcCcCC--C---CCCCCCccCHHHHHHhHHHHHHh
Q 017204 249 LRARVYDDEV-----RKWIS--------------GVGVGSIGKSLVNSKEA--A---PTFEQPRMTMEKLLEYGNMIVQE 304 (375)
Q Consensus 249 l~~~~~~~~i-----~~~i~--------------~~~~~~~~~~l~~~~~~--~---~~~~~~~~~~~~ll~~~~~~~~e 304 (375)
..++++... +.+++ ..-++++.+.+|.+... . -.-....+++++|+.+......|
T Consensus 403 -~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 403 -IQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred -HHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 223222221 12221 11234444555544220 0 01233689999999999999999
Q ss_pred hhhhhhcchHHHHhchhc
Q 017204 305 QENVKRVQLADKYLSEAA 322 (375)
Q Consensus 305 ~~~~~~~~l~~~~l~~~~ 322 (375)
++.++.+..+++|.+.++
T Consensus 482 ~~~~~~~~~~~~w~~~~~ 499 (512)
T TIGR03689 482 SEDLPNTTNPDDWARISG 499 (512)
T ss_pred cccCCCCCCHHHHhhhhC
Confidence 999999999999999843
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.1e-34 Score=310.47 Aligned_cols=224 Identities=23% Similarity=0.343 Sum_probs=177.1
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
...|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..| +...||||||||+
T Consensus 480 ~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEi 555 (733)
T TIGR01243 480 EKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEI 555 (733)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEECh
Confidence 345899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|++++.|+......+..++++++| ..+| |. ....+|+||+|||+++.||+|++||||||+.++ +|+
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL-~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd 623 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLL-TEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPD 623 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHH-HHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcC
Confidence 999998864434445556666555 3333 44 456789999999999999999999999999999 799
Q ss_pred HHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCC-C
Q 017204 210 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT-F 284 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~-~ 284 (375)
.++|.+|++.+.... +++.+.+++.++||+|+||.. ++..+...++++.+.....+.+.. ..+. .
T Consensus 624 ~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~---~~~~A~~~a~~~~~~~~~~~~~~~-------~~~~~~ 693 (733)
T TIGR01243 624 EEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA---VCREAAMAALRESIGSPAKEKLEV-------GEEEFL 693 (733)
T ss_pred HHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHhhhccchhhhc-------cccccc
Confidence 999999998887654 466778999999999999964 344444445555554332222211 0001 1
Q ss_pred CCCccCHHHHHHhHHHH
Q 017204 285 EQPRMTMEKLLEYGNMI 301 (375)
Q Consensus 285 ~~~~~~~~~ll~~~~~~ 301 (375)
....++.+++.++...+
T Consensus 694 ~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 694 KDLKVEMRHFLEALKKV 710 (733)
T ss_pred ccCcccHHHHHHHHHHc
Confidence 23467888888876543
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=280.80 Aligned_cols=263 Identities=19% Similarity=0.273 Sum_probs=190.9
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhh--hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l--~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
..-..+|+++-+-..+...+.+-++.+...+-+ .-.-.++|+|||||||||||||++|+|+|++.|.+|+.|+.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 333344555555555555555555555544333 233567999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 97 s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
++|.|+++++++.+|.-| .+-+||||||||+|++.+.|. .+ ......+...-+|-+.| |. .....
T Consensus 165 ~KWfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~-s~-dHEa~a~mK~eFM~~WD--------Gl-~s~~~ 229 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRR-ST-DHEATAMMKNEFMALWD--------GL-SSKDS 229 (386)
T ss_pred hhhHHHHHHHHHHHHhhh----hhcCcceeehhhHHHHHhhcc-cc-hHHHHHHHHHHHHHHhc--------cc-cCCCC
Confidence 999999999999999999 899999999999999999884 33 34444444545555555 54 22344
Q ss_pred CCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHHHHHH
Q 017204 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALR 250 (375)
Q Consensus 177 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~~al~ 250 (375)
.+|+|+++||||.+||.|++| ||-+.++ +|+.++|.+|++.+++.+ +++...++++|+||||+||..+ |
T Consensus 230 ~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkel---C 304 (386)
T KOG0737|consen 230 ERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKEL---C 304 (386)
T ss_pred ceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHH---H
Confidence 579999999999999999999 8888888 899999999999999875 5667789999999999999644 3
Q ss_pred hhhhHHHHHHHHHhc-cCcchhhhhhcCcCCCC---CCCCCccCHHHHHHhHHHH
Q 017204 251 ARVYDDEVRKWISGV-GVGSIGKSLVNSKEAAP---TFEQPRMTMEKLLEYGNMI 301 (375)
Q Consensus 251 ~~~~~~~i~~~i~~~-~~~~~~~~l~~~~~~~~---~~~~~~~~~~~ll~~~~~~ 301 (375)
..+.-.-+|+++..- +...+...+-..+...+ ...-..++.++|..+...+
T Consensus 305 ~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 305 RLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred HHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 333333466776653 21111111111111111 1123467888888887644
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.3e-34 Score=295.46 Aligned_cols=174 Identities=22% Similarity=0.345 Sum_probs=151.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.|+++|+|||||||||||||++|+++|++++.+++.++.+.+.++|+|++++.++++|..| +..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 211 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~ 211 (375)
++..+.........++++.++| ..++ ....+|+||+|||+++.||++++|+||||+.++ +|+.+
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL-~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFI-TWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHHHHHHHHHH-HHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 9876543333344555555443 4444 334679999999999999999999999999999 89999
Q ss_pred HHHHhhhhhcCCC------CCCHHHHHHHhcCCChhhHHH
Q 017204 212 DRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 212 ~R~~Il~~~l~~~------~v~~~~la~lt~gf~gadl~~ 245 (375)
+|.+|++.++... +.+.+.+++.|+||+|+||..
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 9999999998653 456778999999999999964
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=281.66 Aligned_cols=209 Identities=18% Similarity=0.252 Sum_probs=167.1
Q ss_pred ccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G 101 (375)
.+|+++.|-......+.+.+....... .....|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|+|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g 221 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG 221 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence 344665554455555555554444432 3346699999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 181 (375)
++++.++.+|..| +..+|+||||||+|+++.+|.+... ..+..++..+++++. ++++. ....+|.|
T Consensus 222 e~~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~V 287 (398)
T PTZ00454 222 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKV 287 (398)
T ss_pred hhHHHHHHHHHHH----HhcCCeEEEEECHhhhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEE
Confidence 9999999999998 8899999999999999887742211 112334445555554 33344 44567999
Q ss_pred EEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 182 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 182 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
|+|||+++.||||++|+||||+.++ +|+.++|.+|++.++... +++.+.++..++||+|+||..
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999999999 799999999999887654 566778999999999999864
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.4e-33 Score=314.03 Aligned_cols=174 Identities=9% Similarity=0.051 Sum_probs=139.2
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC----------CC---------------------
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG--------------------- 101 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~----------~G--------------------- 101 (375)
..|+++|+||||+||||||||+||+|+|.+++++|+.++++++.+++ +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 35899999999999999999999999999999999999999998765 22
Q ss_pred ----------ChHH--HHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCC
Q 017204 102 ----------EPAK--LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169 (375)
Q Consensus 102 ----------e~~~--~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~ 169 (375)
++++ .|+.+|+.| ++.+||||||||||+++.+.. .. ..+ ..|++.+| |
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds--~~-----ltL-~qLLneLD--------g 1763 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES--NY-----LSL-GLLVNSLS--------R 1763 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc--ce-----ehH-HHHHHHhc--------c
Confidence 2233 388899999 999999999999999987632 11 112 23444444 4
Q ss_pred ccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhh-------cCCCCCCHHHHHHHhcCCCh
Q 017204 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGI-------FRNDNVADDDIVKLVDTFPG 240 (375)
Q Consensus 170 ~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~-------l~~~~v~~~~la~lt~gf~g 240 (375)
........+|+||||||+|+.|||||+||||||+.++ .|+..+|.+++..+ +....++.+.+|+.|.||+|
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG 1843 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA 1843 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH
Confidence 4322345789999999999999999999999999999 68888888876543 22334678889999999999
Q ss_pred hhHHHH
Q 017204 241 QSIDFF 246 (375)
Q Consensus 241 adl~~~ 246 (375)
|||..+
T Consensus 1844 ADLanL 1849 (2281)
T CHL00206 1844 RDLVAL 1849 (2281)
T ss_pred HHHHHH
Confidence 999754
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.3e-33 Score=288.94 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=165.4
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHh--hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~--~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
...+|+++.+...+...+.+.+ .. .++ .....|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~-~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIV-DF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 3556677766655655554322 22 222 1234578999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
+.|.+++.++.+|..| +..+||||||||||+++.+++.+. ......+.++++| . ++++. ...
T Consensus 128 ~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL-~--------~~d~~---~~~ 191 (495)
T TIGR01241 128 FVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL-V--------EMDGF---GTN 191 (495)
T ss_pred HhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH-h--------hhccc---cCC
Confidence 9999999999999999 889999999999999998775321 1122234444443 2 23344 455
Q ss_pred CCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 177 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
.+|+||+|||+++.||++|+||||||+.++ +|+.++|.+|++.++... .++...++..+.||+|+||..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 679999999999999999999999999999 799999999999988654 3556779999999999999754
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.8e-33 Score=278.60 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=164.6
Q ss_pred cccccccccCCchhHHHHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCC
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 102 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge 102 (375)
+++++.+-......+.+.+.....+ ......|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.++|.|+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~ 208 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE 208 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccc
Confidence 3344444333333333333333332 223456899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI 182 (375)
+++.++.+|..| +..+|+||||||+|++++.+++... .....+++++++++. ++++. ....+|.||
T Consensus 209 ~~~~i~~~f~~a----~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI 274 (389)
T PRK03992 209 GARLVRELFELA----REKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLA-----EMDGF---DPRGNVKII 274 (389)
T ss_pred hHHHHHHHHHHH----HhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHH-----hcccc---CCCCCEEEE
Confidence 999999999998 8889999999999999988753221 122334555555555 33344 455689999
Q ss_pred EEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 183 ~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+|||+++.||++++||||||+.++ +|+.++|.+|++.++... +++...++..++||+|+||..+
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999998 899999999999887653 4678889999999999999743
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.3e-32 Score=290.54 Aligned_cols=180 Identities=24% Similarity=0.347 Sum_probs=149.9
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..|.++|+|+||+||||||||++|+++|.+++.+|+.++++++.+.+.|...+.++.+|..| +...||||||||||
T Consensus 210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID 285 (638)
T CHL00176 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEID 285 (638)
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecch
Confidence 44888999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
+++.+|+.+.. ..+....++|..++. .+++. ....+|+||+|||+++.||+||+||||||+.+. +|+.
T Consensus 286 ~l~~~r~~~~~--~~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 286 AVGRQRGAGIG--GGNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred hhhhcccCCCC--CCcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 99887752211 111222333444443 33344 455789999999999999999999999999998 8999
Q ss_pred HHHHHhhhhhcCCCC----CCHHHHHHHhcCCChhhHHHH
Q 017204 211 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 211 ~~R~~Il~~~l~~~~----v~~~~la~lt~gf~gadl~~~ 246 (375)
++|.+|++.++.... ++...+++.+.||+|+||..+
T Consensus 356 ~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999987643 345569999999999999754
No 30
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=2.2e-32 Score=254.62 Aligned_cols=181 Identities=22% Similarity=0.290 Sum_probs=150.0
Q ss_pred HHHhhhhCC---CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC
Q 017204 46 ITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122 (375)
Q Consensus 46 ~~k~~l~~~---~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~ 122 (375)
+.-.||..| |-=.|+.+|+|||||||||++|+|+|++...+++.+++.+|...++|+..+.|+++|.+| ++.+
T Consensus 135 li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA----~~~a 210 (368)
T COG1223 135 LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA----RKAA 210 (368)
T ss_pred HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH----HhcC
Confidence 334455433 445799999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcce
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 202 (375)
|||+||||+|+++-+|.-..-..-...+++++| . +++|. ..+.+|+.|++||+|+.||+|++. ||+
T Consensus 211 PcivFiDE~DAiaLdRryQelRGDVsEiVNALL-T--------elDgi---~eneGVvtIaaTN~p~~LD~aiRs--RFE 276 (368)
T COG1223 211 PCIVFIDELDAIALDRRYQELRGDVSEIVNALL-T--------ELDGI---KENEGVVTIAATNRPELLDPAIRS--RFE 276 (368)
T ss_pred CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH-H--------hccCc---ccCCceEEEeecCChhhcCHHHHh--hhh
Confidence 999999999999877641111112234455433 2 33355 688899999999999999999975 999
Q ss_pred EEEe--CCCHHHHHHhhhhhcCCCC----CCHHHHHHHhcCCChhhHH
Q 017204 203 KFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 203 ~~i~--~P~~~~R~~Il~~~l~~~~----v~~~~la~lt~gf~gadl~ 244 (375)
..|+ +|+.++|.+|++.+....+ .+...+++.+.||||.||.
T Consensus 277 eEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 277 EEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred heeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 8888 9999999999999887653 4466799999999999984
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=272.21 Aligned_cols=181 Identities=21% Similarity=0.322 Sum_probs=152.1
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
...|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|.|+.++.++.+|..| +...|+|||||||
T Consensus 210 ~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEI 285 (438)
T PTZ00361 210 DDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEI 285 (438)
T ss_pred HhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999998 8889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|+++.+|..... ...+.++.++++++. ++++. ....+|.||+|||+++.||++++|+||||+.|+ +|+
T Consensus 286 D~l~~kR~~~~s--gg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 286 DAIGTKRYDATS--GGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred HHHhccCCCCCC--cccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 999987752111 112233344444444 33344 445679999999999999999999999999999 799
Q ss_pred HHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 210 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
.++|.+|++.++... +++.+.++..+++|+|+||..+
T Consensus 356 ~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i 396 (438)
T PTZ00361 356 EKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAI 396 (438)
T ss_pred HHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHH
Confidence 999999999887553 5677889999999999998643
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=273.10 Aligned_cols=240 Identities=23% Similarity=0.308 Sum_probs=187.6
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeeeeccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL 131 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~-p~IL~iDEi 131 (375)
..|+++|+|+|+|||||||||+++++||++.++.++.++++++.+++.|++++.+|..|++| .+.+ |+|||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 56999999999999999999999999999999999999999999999999999999999999 8888 999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|+++++|.. ... + .+.+...|+.++| ++ ....+++||+|||+|+.||++++| ||||+.+. .|+
T Consensus 288 d~l~p~r~~-~~~-~-e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREG-ADD-V-ESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCcccc-cch-H-HHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 999999862 222 3 4444556667777 55 567899999999999999999999 99999999 899
Q ss_pred HHHHHHhhhhhcCCCC----CCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcC---cCCCC
Q 017204 210 REDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNS---KEAAP 282 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~~----v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~---~~~~~ 282 (375)
..+|.+|++.+....+ ++..+++..++||.|+|+. +++......++++-.+. +-..+... ....+
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~~~~~-----~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRRTLEI-----FQEALMGIRPSALREI 424 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhhhHHH-----HHHHHhcCCchhhhhe
Confidence 9999999999987654 4456699999999999995 44444444445551111 11111111 11234
Q ss_pred CCCCCccCHHHHHHhHHHHHHh-hhhh-hhcchHHHHhch
Q 017204 283 TFEQPRMTMEKLLEYGNMIVQE-QENV-KRVQLADKYLSE 320 (375)
Q Consensus 283 ~~~~~~~~~~~ll~~~~~~~~e-~~~~-~~~~l~~~~l~~ 320 (375)
..+.+.++|+++-.. ..+..| |+.| .-.+.+++|.+.
T Consensus 425 ~ve~p~v~W~dIGGl-E~lK~elq~~V~~p~~~pe~F~r~ 463 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGL-EELKRELQQAVEWPLKHPEKFARF 463 (693)
T ss_pred eccCCCCChhhccCH-HHHHHHHHHHHhhhhhchHHHHHh
Confidence 467788999987422 223334 3334 568889999887
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1e-30 Score=277.73 Aligned_cols=178 Identities=21% Similarity=0.306 Sum_probs=151.7
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..+.+.|+|+||+||||||||++|+++|++++.+|+.++++++.+.+.|..+..++.+|..| +..+||||||||+|
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD 254 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID 254 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHh
Confidence 34678899999999999999999999999999999999999999999999999999999998 88899999999999
Q ss_pred cccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CC
Q 017204 133 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 208 (375)
Q Consensus 133 ~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 208 (375)
+++.+|+.+. ......+.++++|. +++++ ....+|+||+|||+++.||+|++||||||+.++ +|
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL~---------~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQMLV---------EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHH---------hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 9998875321 12223345554442 33355 456789999999999999999999999999999 79
Q ss_pred CHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 209 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+.++|.+|++.++... +++...+++.+.||+|+||..+
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 9999999999998764 4666779999999999999754
No 34
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=265.29 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=177.9
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
...+...++.+-+.......+.+.+++...++-+...--.+++|+||+||||+|||+|+++||.|+++.|+.+++++|.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34455566777777777778888888888877766555567799999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
+|+|+++++||.+|.-| +..+|+||||||+|+++..|. ......+.++..++|+++.- . .....+
T Consensus 225 K~~Ge~eK~vralf~vA----r~~qPsvifidEidslls~Rs-~~e~e~srr~ktefLiq~~~---------~-~s~~~d 289 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRS-DNEHESSRRLKTEFLLQFDG---------K-NSAPDD 289 (428)
T ss_pred hccChHHHHHHHHHHHH----HhcCCeEEEechhHHHHhhcC-CcccccchhhhhHHHhhhcc---------c-cCCCCC
Confidence 99999999999999999 999999999999999999985 44455666777778864433 2 224456
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC-----CCHHHHHHHhcCCChhhHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN-----VADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~-----v~~~~la~lt~gf~gadl~~ 245 (375)
+|+||+|||+|+.+|.|++| ||.++++ +|+.+.|..+++.++...+ .+.+.|+++|+||+|+||..
T Consensus 290 rvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred eEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999999999 9999999 7999999999998887652 33556999999999999963
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=1.9e-30 Score=258.71 Aligned_cols=181 Identities=24% Similarity=0.342 Sum_probs=151.3
Q ss_pred hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 52 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 52 ~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
...|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..+|.|+..+.++.+|..| +...|+||||||+
T Consensus 149 ~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEi 224 (364)
T TIGR01242 149 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEI 224 (364)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhh
Confidence 356899999999999999999999999999999999999999999999999999999999988 8889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
|++..++.+... .....++..+++++. ++++. ...+++.||+|||+++.+|++++|+||||+.++ .|+
T Consensus 225 D~l~~~~~~~~~--~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 225 DAIAAKRTDSGT--SGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred hhhccccccCCC--CccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 999877652211 112333444445544 33333 445689999999999999999999999999988 799
Q ss_pred HHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 210 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
.++|.+|++.+.... +++.+.+++.++||+|+||..+
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999887653 4678889999999999999643
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-29 Score=266.45 Aligned_cols=210 Identities=17% Similarity=0.234 Sum_probs=171.7
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEeccCcc
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGEL 95 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs~s~l 95 (375)
..+|+.+=|...+.+.+.+.+.....-.-. ...++.+|+|+|+|||||||||+.|+++|..+. +.|+.-++...
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 334477666556666666666555444322 356999999999999999999999999999973 57888999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.++|+|+.++.++.+|++| ++.+|+||||||||-+++.|. .-+.....++ ..+|+-++| |+ ..
T Consensus 341 lskwvgEaERqlrllFeeA----~k~qPSIIffdeIdGlapvrS-skqEqih~SI-vSTLLaLmd--------Gl---ds 403 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRS-SKQEQIHASI-VSTLLALMD--------GL---DS 403 (1080)
T ss_pred hccccCcHHHHHHHHHHHH----hccCceEEecccccccccccc-chHHHhhhhH-HHHHHHhcc--------CC---CC
Confidence 9999999999999999999 999999999999999999885 2333333334 456777777 77 78
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC--CCCHH---HHHHHhcCCChhhHHHHHH
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADD---DIVKLVDTFPGQSIDFFGA 248 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~--~v~~~---~la~lt~gf~gadl~~~~a 248 (375)
++.|+||+||||++.+||||+||||||+.+| +|+.++|.+|+..+..+- .+... .+++.+.||.|+||.+++.
T Consensus 404 RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 8999999999999999999999999999999 899999999998887654 44433 3899999999999876543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.4e-27 Score=253.77 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=165.5
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~ 99 (375)
..++|+++.+.......+.+.+......+ .....|+.+|+|+|||||||||||++|+++|++++.+++.++++++.+++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 34556666554444444444443333222 22456899999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 017204 100 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179 (375)
Q Consensus 100 ~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 179 (375)
.|+++..++.+|+.| ....|+||||||+|+++++++. .......++ ...|+++++ +. ....+|
T Consensus 253 ~g~~~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~~-~~~~~~~~~-~~~Ll~~ld--------~l---~~~~~v 315 (733)
T TIGR01243 253 YGESEERLREIFKEA----EENAPSIIFIDEIDAIAPKREE-VTGEVEKRV-VAQLLTLMD--------GL---KGRGRV 315 (733)
T ss_pred ccHHHHHHHHHHHHH----HhcCCcEEEeehhhhhcccccC-CcchHHHHH-HHHHHHHhh--------cc---ccCCCE
Confidence 999999999999999 8889999999999999988752 222233333 345556666 33 345678
Q ss_pred eEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 180 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+||+|||+++.||++++|+|||++.+. +|+.++|.+|++.+.... +++.+.+++.++||+|+++..+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 999999999999999999999999888 799999999999877654 4567779999999999998653
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.91 E-value=3.4e-24 Score=180.88 Aligned_cols=130 Identities=26% Similarity=0.375 Sum_probs=111.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeeeecccccccCCCCC
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG 140 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~-p~IL~iDEiD~i~~~r~~ 140 (375)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+++++.++..|..+ +... |+||||||+|.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhcccccc-
Confidence 79999999999999999999999999999999999999999999999999998 7666 99999999999988762
Q ss_pred CcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCC
Q 017204 141 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208 (375)
Q Consensus 141 ~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P 208 (375)
.......+.+.+.|++.+++ . .....+++||+|||+++.++++++| +||++.+++|
T Consensus 76 -~~~~~~~~~~~~~L~~~l~~--------~--~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 -PSSSSFEQRLLNQLLSLLDN--------P--SSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -TSSSHHHHHHHHHHHHHHHT--------T--TTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -cccccccccccceeeecccc--------c--ccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 23444555566677777772 1 1224679999999999999999999 9999999865
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.2e-22 Score=197.29 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=135.9
Q ss_pred cccccccCCchhHHHHHHHHH-HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChH
Q 017204 26 DNTIDGLYIAPAFMDKLVVHI-TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 104 (375)
Q Consensus 26 ~~~~~~~~i~~~~~d~~~~~~-~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~ 104 (375)
+.+.-+..++.++++-+..-+ -|.|.+.-|....+|-|||||||||||++..|+|++|+..++.+..++.. ...
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-----~n~ 275 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-----LDS 275 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----CcH
Confidence 444444444444443332222 24566677999999999999999999999999999999999998877655 222
Q ss_pred HHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCccc----c-hhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 017204 105 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY----T-VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179 (375)
Q Consensus 105 ~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~----~-~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 179 (375)
. ++.+... ....+||+|.|||+.+.-++..... . ..+.+.-.=|+|.+| |.|......|
T Consensus 276 d-Lr~LL~~------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~ER- 339 (457)
T KOG0743|consen 276 D-LRHLLLA------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDER- 339 (457)
T ss_pred H-HHHHHHh------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCce-
Confidence 2 5665554 4567899999999986533311110 0 112233334556666 8887665555
Q ss_pred eEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCC
Q 017204 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 238 (375)
Q Consensus 180 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf 238 (375)
+||+|||+++.|||||+||||+|.+|+ -=+.++-..+++.++... ..-.++|.++.++-
T Consensus 340 IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~ 402 (457)
T KOG0743|consen 340 IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET 402 (457)
T ss_pred EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC
Confidence 589999999999999999999999999 468888889999999774 34456677777776
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.6e-22 Score=188.64 Aligned_cols=153 Identities=21% Similarity=0.348 Sum_probs=127.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------ceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCce
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMC 124 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~---------~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~ 124 (375)
-+..-+-||||||||||||+||+++|+++.+ ..+.+++..|.+||.+|+++++.++|++..+++. .+...
T Consensus 173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLV 252 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEE
Confidence 3445688999999999999999999999754 4677999999999999999999999999988888 66677
Q ss_pred eeeecccccccCCCC---CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 125 CLMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 125 IL~iDEiD~i~~~r~---~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
+++|||+++++..|. +.++.+-.-+.|++.|- .+| .. ...++|++.+|+|-.+.||-|+.- |-
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLT-QlD--------rl---K~~~NvliL~TSNl~~siD~AfVD--RA 318 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLT-QLD--------RL---KRYPNVLILATSNLTDSIDVAFVD--RA 318 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHH-HHH--------Hh---ccCCCEEEEeccchHHHHHHHhhh--Hh
Confidence 899999999987663 23444555566765553 222 33 777999999999999999999985 89
Q ss_pred eEEEe--CCCHHHHHHhhhhhc
Q 017204 202 EKFYW--APTREDRIGVCKGIF 221 (375)
Q Consensus 202 d~~i~--~P~~~~R~~Il~~~l 221 (375)
|.+.+ .|+...|.+|++.++
T Consensus 319 Di~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 319 DIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred hheeecCCccHHHHHHHHHHHH
Confidence 98888 899999999988765
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.2e-19 Score=176.51 Aligned_cols=195 Identities=16% Similarity=0.239 Sum_probs=142.1
Q ss_pred cccCCchhHHHHHHHHHHHhhhhCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHH
Q 017204 30 DGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108 (375)
Q Consensus 30 ~~~~i~~~~~d~~~~~~~k~~l~~~-~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir 108 (375)
++..++|.+ ++-+.+++..-.... .-.+-+.||+|||||||||+.|+.+|...|+.+-.+.++++. ..--+....|+
T Consensus 355 ~~ViL~psL-e~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH 432 (630)
T KOG0742|consen 355 EGVILHPSL-EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIH 432 (630)
T ss_pred CCeecCHHH-HHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHH
Confidence 444556665 344455554433222 333558999999999999999999999999999999998875 22234567899
Q ss_pred HHHHHHHHHHHh-CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 017204 109 QRYREAADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 109 ~~F~~A~~~~~~-~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 187 (375)
++|..| ++ .+.-+|||||.|++...|...-........++.+|. ........++++.+||+
T Consensus 433 ~lFDWa----kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf--------------RTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 433 KLFDWA----KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF--------------RTGDQSRDIVLVLATNR 494 (630)
T ss_pred HHHHHH----hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH--------------HhcccccceEEEeccCC
Confidence 999999 64 445688999999999888633333444556666662 22244567899999999
Q ss_pred CCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC---------------------------CCC----HHHHHHH
Q 017204 188 FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND---------------------------NVA----DDDIVKL 234 (375)
Q Consensus 188 ~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~---------------------------~v~----~~~la~l 234 (375)
|..||.|+- .|+|..++ +|..++|..++..|+.+. +.+ ..+.++.
T Consensus 495 pgdlDsAV~--DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk 572 (630)
T KOG0742|consen 495 PGDLDSAVN--DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK 572 (630)
T ss_pred ccchhHHHH--hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh
Confidence 999999996 59999998 899999999977665320 111 2348999
Q ss_pred hcCCChhhHHHH
Q 017204 235 VDTFPGQSIDFF 246 (375)
Q Consensus 235 t~gf~gadl~~~ 246 (375)
|+||||..|.-+
T Consensus 573 TeGfSGREiakL 584 (630)
T KOG0742|consen 573 TEGFSGREIAKL 584 (630)
T ss_pred ccCCcHHHHHHH
Confidence 999999998643
No 42
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-19 Score=187.72 Aligned_cols=148 Identities=22% Similarity=0.306 Sum_probs=123.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC---------CCCChHHHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~---------~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.++||+||||+|||+|+++||+.+|..|+.++.+-+.+. |+|.-...|-+-..+| .....|++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka-----~~~NPv~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA-----GVKNPVFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-----CCcCCeEEeec
Confidence 489999999999999999999999999999998877543 8887555555666666 44455999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC--CCCCceEEEEeCCCCCCChhhcCCCcceEEEe-C
Q 017204 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 207 (375)
Q Consensus 131 iD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~--~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~ 207 (375)
||++..+..+... ..|+++||+.+|..+...|... +.+.|++|+|+|..+.||.||+- ||+.+-. =
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsg 494 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSG 494 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecC
Confidence 9999887654433 6889999999999998887654 46899999999999999999994 9987655 5
Q ss_pred CCHHHHHHhhhhhcCC
Q 017204 208 PTREDRIGVCKGIFRN 223 (375)
Q Consensus 208 P~~~~R~~Il~~~l~~ 223 (375)
.+.++..+|.+.|+-.
T Consensus 495 Yt~~EKl~IAk~~LiP 510 (782)
T COG0466 495 YTEDEKLEIAKRHLIP 510 (782)
T ss_pred CChHHHHHHHHHhcch
Confidence 8999999999988754
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.5e-19 Score=181.74 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=126.8
Q ss_pred HHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc---------CCCCChHHHHHHHH
Q 017204 41 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRY 111 (375)
Q Consensus 41 ~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~F 111 (375)
++..+++-.- +.|--..++++|+||||+|||+++++||..+|..|+..|-+-+.+ .|+|.-...|-+..
T Consensus 422 RILEfiAV~k--Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~L 499 (906)
T KOG2004|consen 422 RILEFIAVGK--LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCL 499 (906)
T ss_pred HHHHHHHHHh--hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHH
Confidence 4444444333 345566789999999999999999999999999999998876644 37887544444555
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFS 189 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--~~~~~V~VI~TTN~~~ 189 (375)
++. .....+++|||||++.....++. ...|+++||+.+|..+-..|.. .+.++|++|||+|..+
T Consensus 500 K~v-----~t~NPliLiDEvDKlG~g~qGDP---------asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id 565 (906)
T KOG2004|consen 500 KKV-----KTENPLILIDEVDKLGSGHQGDP---------ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID 565 (906)
T ss_pred Hhh-----CCCCceEEeehhhhhCCCCCCCh---------HHHHHHhcChhhccchhhhccccccchhheEEEEeccccc
Confidence 655 44455999999999984333222 2688999999999988777665 4569999999999999
Q ss_pred CCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCC
Q 017204 190 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN 223 (375)
Q Consensus 190 ~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~ 223 (375)
.||+||+- ||+.+-. =...++..+|.+.|+..
T Consensus 566 tIP~pLlD--RMEvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 566 TIPPPLLD--RMEVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred cCChhhhh--hhheeeccCccHHHHHHHHHHhhhh
Confidence 99999984 8886444 36889999999998854
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=7.6e-18 Score=183.01 Aligned_cols=165 Identities=20% Similarity=0.292 Sum_probs=119.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~---------s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.++||+||||||||++|++||++++.+|+.++.+.+. ..|+|.....+.+.|..+ ....| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 4799999999999999999999999999998765442 357888777777888777 44444 899999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc--cCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-C
Q 017204 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 207 (375)
Q Consensus 131 iD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~--~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~ 207 (375)
||++.....+. ....|++++|+.++..+...+. ..+.+++++|+|||..+.|+++|++ ||+.+.. .
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~ 491 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSG 491 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCC
Confidence 99998653311 1246777777543332222211 1344789999999999999999997 8875444 6
Q ss_pred CCHHHHHHhhhhhcC----------C--CCCCHHHHHHHhcCCCh
Q 017204 208 PTREDRIGVCKGIFR----------N--DNVADDDIVKLVDTFPG 240 (375)
Q Consensus 208 P~~~~R~~Il~~~l~----------~--~~v~~~~la~lt~gf~g 240 (375)
|+.+++.+|++.++. . -.++.+.+..++.+|+.
T Consensus 492 ~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 492 YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 899999999887651 1 13555567766666653
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=3.4e-17 Score=156.23 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=117.1
Q ss_pred cccccccCCchhHHHHHHHHHHHhhhhCCCCCC---CcEEEEEcCCCchHHHHHHHHHHHh---C----CceEEeccCcc
Q 017204 26 DNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKV---PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGEL 95 (375)
Q Consensus 26 ~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~---p~glLL~GPPGtGKT~LA~aIA~el---g----~~~i~vs~s~l 95 (375)
+.+.|-..++..+.+.+............|.++ +..++|+||||||||++|+++|+++ + .+++.++++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 444554455555544332222222222234443 3578999999999999999999874 2 36788999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.++|+|+.+..++++|..| .++||||||+|.+.... +.... +....+|+..++ ..
T Consensus 86 ~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~----~~~~~-~~~i~~Ll~~~e-------------~~ 140 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKA-------LGGVLFIDEAYSLARGG----EKDFG-KEAIDTLVKGME-------------DN 140 (261)
T ss_pred hhhhccchHHHHHHHHHhc-------cCCEEEEechhhhccCC----ccchH-HHHHHHHHHHHh-------------cc
Confidence 9999999999999999876 25799999999986421 11112 223345555555 22
Q ss_pred CCCceEEEEeCCC-----CCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CCHHHH
Q 017204 176 NPRVPIIVTGNDF-----STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADDDI 231 (375)
Q Consensus 176 ~~~V~VI~TTN~~-----~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~~~~l 231 (375)
...+++|++++.. ..++|+|.+ ||...+. .++.+++.+|++.++...+ ++.+.+
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~ 203 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAK 203 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHH
Confidence 3445666665432 247889987 8877666 5688999999998886543 444433
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=1.9e-17 Score=160.30 Aligned_cols=172 Identities=11% Similarity=0.089 Sum_probs=118.1
Q ss_pred ccccccCCchhHHHHHHHHHHHhhhhCCCCCCC---cEEEEEcCCCchHHHHHHHHHHHhC-------CceEEeccCccc
Q 017204 27 NTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVP---LILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELE 96 (375)
Q Consensus 27 ~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p---~glLL~GPPGtGKT~LA~aIA~elg-------~~~i~vs~s~l~ 96 (375)
++.|-..++..+.+.+............|+.+| ..+||+||||||||++|+++|+.+. .+++.++.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 455555555555443322112222223355443 4589999999999999999999852 258889999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 97 s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
++|+|+++..++.+|+.| .++||||||+|.+...++. . . ....+..+|+.+++ ...
T Consensus 104 ~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~-~--~-~~~e~~~~L~~~me-------------~~~ 159 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNE-R--D-YGSEAIEILLQVME-------------NQR 159 (287)
T ss_pred HHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCc-c--c-hHHHHHHHHHHHHh-------------cCC
Confidence 999999888777777766 3579999999998654321 1 1 12445556666666 223
Q ss_pred CCceEEEEeCCCC-----CCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC
Q 017204 177 PRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND 224 (375)
Q Consensus 177 ~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~ 224 (375)
.+++||++++... .++|+|+| ||+..+. .++.+++.+|++.++...
T Consensus 160 ~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 160 DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 5577888876432 34689988 8888777 689999999999888654
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=3.7e-17 Score=158.10 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=120.6
Q ss_pred ccccccCCchhHHHHHHHHHHHhhhhCCCCCC---CcEEEEEcCCCchHHHHHHHHHHHhC-------CceEEeccCccc
Q 017204 27 NTIDGLYIAPAFMDKLVVHITKNFMSLPNIKV---PLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELE 96 (375)
Q Consensus 27 ~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~---p~glLL~GPPGtGKT~LA~aIA~elg-------~~~i~vs~s~l~ 96 (375)
++.|-..++..+.+.+............|+.+ ..++||+||||||||++|+++|+.+. -+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 45555556666555433322222323345543 45899999999999999999998863 268889999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 97 s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
++|.|+++..++++|+.| .++||||||+|.+.+.+.. ......+.+.|+++++ ...
T Consensus 103 ~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~ 158 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NQR 158 (284)
T ss_pred HhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHh-------------cCC
Confidence 999999988888888776 3489999999998654321 1122345556666666 223
Q ss_pred CCceEEEEeCCC--C---CCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC
Q 017204 177 PRVPIIVTGNDF--S---TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND 224 (375)
Q Consensus 177 ~~V~VI~TTN~~--~---~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~ 224 (375)
.++.||++++.. + .++|+|.| ||...+. .++.+++..|++.++...
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 567788887642 2 24799998 8887777 578999999998888764
No 48
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.8e-16 Score=164.25 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=142.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
.+.-..+||+|+||||||++++++|.++|+|++.+++.++.+...+.++..+...|.+| +...|+||||-++|.+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEeccceee
Confidence 34455799999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCCCHHHHHH
Q 017204 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 215 (375)
Q Consensus 136 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~~~R~~ 215 (375)
.+..++. ...+.+.+..++. ....+...++++||+||+..+.|++.+.+..+++..+..|+.++|.+
T Consensus 504 id~dgge-----d~rl~~~i~~~ls--------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDGGE-----DARLLKVIRHLLS--------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCCch-----hHHHHHHHHHHHh--------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 6665322 2222222222222 11122456889999999999999999999888888888999999999
Q ss_pred hhhhhcCCCCCC----HHHHHHHhcCCChhhHHHH
Q 017204 216 VCKGIFRNDNVA----DDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 216 Il~~~l~~~~v~----~~~la~lt~gf~gadl~~~ 246 (375)
|++.++....++ ...++..+.+|+-++++-+
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 999998776555 4469999999999999754
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.7e-16 Score=161.04 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=148.8
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..+..+|++++++||||||||++++++|.+ +..+..+++++..++|.|+++..++..|..| +...|+++++||+|
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~ 86 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEID 86 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhh
Confidence 358899999999999999999999999999 8877889999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
++.+.+.. ....+..+.+.+++ ..++ +.. ... +++++.||++..++++++|++||++.+. .|+.
T Consensus 87 ~~~~~~~~-~~~~~~~~v~~~l~-~~~d--------~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 87 ALAPKRSS-DQGEVERRVVAQLL-ALMD--------GLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred hcccCccc-cccchhhHHHHHHH-Hhcc--------ccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99999874 44445555555444 3444 342 445 8999999999999999999999999999 7999
Q ss_pred HHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 211 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 211 ~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
..+.+|+..+.... +.+...++..+.+|.++++..+
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence 99999877665432 5667789999999999999755
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.5e-16 Score=163.44 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=139.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC----CceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg----~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.+-.|||+||+|||||.|+++++++.. +++..++++.+..+.....-+.++.+|..| .+.+|+||++|++|.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEEcchhh
Confidence 445799999999999999999999964 567779999887555444555666666666 999999999999999
Q ss_pred ccCC-CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCH
Q 017204 134 GAGR-MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 210 (375)
Q Consensus 134 i~~~-r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~ 210 (375)
+++. ...+++..+..+++..+|.++.+ .+ .+.+..|.+|+|.+....|+|-|..+++|+.++. .|+.
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~---------~y-~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIK---------IY-LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHH---------HH-HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 9883 23456777888888888877666 11 2345568999999999999999999999998888 5889
Q ss_pred HHHHHhhhhhcCCCCCC-----HHHHHHHhcCCChhhHHHH
Q 017204 211 EDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 211 ~~R~~Il~~~l~~~~v~-----~~~la~lt~gf~gadl~~~ 246 (375)
.+|.+|++.++.+...+ .+-++..|+||...|+..|
T Consensus 576 ~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 99999998888664321 2238999999999999865
No 51
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.67 E-value=7.1e-16 Score=167.15 Aligned_cols=164 Identities=20% Similarity=0.310 Sum_probs=121.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeeeec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 129 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iD 129 (375)
...++|+||||||||++++.+|+.++.+++.++.+...+ .|.|.....+.+.+..+ . ....|||||
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~-~~~~villD 423 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----G-VKNPLFLLD 423 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----C-CCCCEEEEE
Confidence 347999999999999999999999999999888665532 36666655555666655 3 334589999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 206 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~- 206 (375)
|+|++.....+. ....|++++|+.++..+...+.. .+.++|++|+|||... |++||+. ||+.+.+
T Consensus 424 Eidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~ii~~~ 491 (784)
T PRK10787 424 EIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RMEVIRLS 491 (784)
T ss_pred ChhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--ceeeeecC
Confidence 999997654321 23678889997777776655443 4568999999999984 9999996 9987666
Q ss_pred CCCHHHHHHhhhhhcCC----------C--CCCHHHHHHHhcCCC
Q 017204 207 APTREDRIGVCKGIFRN----------D--NVADDDIVKLVDTFP 239 (375)
Q Consensus 207 ~P~~~~R~~Il~~~l~~----------~--~v~~~~la~lt~gf~ 239 (375)
.++.++..+|++.++.. . .++.+.+..++.+|+
T Consensus 492 ~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 492 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 78999999998888742 1 234444666666654
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=4e-16 Score=168.67 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=121.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
+....++|+||||||||++|+++|+.+ +..++.++.+.+. .+|.|+.+..++.+|+++ ++..|+
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~ 276 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNA 276 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCe
Confidence 345678999999999999999999997 7788888888887 579999999999999998 667799
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDG 199 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~g 199 (375)
||||||||.+.+....... . .-+..+|...+. .+.+.+|++||.. -.+|+||.|
T Consensus 277 ILfiDEih~l~~~g~~~~~-~---~~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r-- 335 (731)
T TIGR02639 277 ILFIDEIHTIVGAGATSGG-S---MDASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR-- 335 (731)
T ss_pred EEEEecHHHHhccCCCCCc-c---HHHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--
Confidence 9999999999876431111 1 112223322222 3568899999963 358999999
Q ss_pred cceEEEe-CCCHHHHHHhhhhhcCC----C--CCCHHH---HHHHhcCCC------hhhHHHHH
Q 017204 200 RMEKFYW-APTREDRIGVCKGIFRN----D--NVADDD---IVKLVDTFP------GQSIDFFG 247 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~~~l~~----~--~v~~~~---la~lt~gf~------gadl~~~~ 247 (375)
||..+.. .|+.+++.+|++.+... . .++.+. ++.++..|- .-.|+++.
T Consensus 336 Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld 399 (731)
T TIGR02639 336 RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVID 399 (731)
T ss_pred hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHH
Confidence 8886544 89999999998865532 2 345444 566676663 33465553
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.60 E-value=9.1e-15 Score=135.70 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
...-.+|||||||+|||+||+.||++++.+|..++++.+. .. .-+..++.. -....|||||||..+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-----k~-~dl~~il~~------l~~~~ILFIDEIHRl-- 113 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-----KA-GDLAAILTN------LKEGDILFIDEIHRL-- 113 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------SC-HHHHHHHHT--------TT-EEEECTCCC---
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----hH-HHHHHHHHh------cCCCcEEEEechhhc--
Confidence 3455899999999999999999999999999999987543 11 222233322 235679999999644
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCcc-ccCC-Ccc---ccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQLP-GMY---NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~-~~~---~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
+..++..|+..+.+-.. +-+. |.. ..-..++--+|++|++...|.++|+- ||-.... ..+
T Consensus 114 -----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 114 -----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp ------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred -----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 24455666666663221 1111 100 00123556899999999999999975 7776554 799
Q ss_pred HHHHHHhhhhhcCCCCCCH
Q 017204 210 REDRIGVCKGIFRNDNVAD 228 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~~v~~ 228 (375)
.++..+|++......+++.
T Consensus 181 ~~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIEI 199 (233)
T ss_dssp HHHHHHHHHHCCHCTT-EE
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 9999999987665555543
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.59 E-value=5e-15 Score=159.72 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
+.+..+||+||||||||++|+++|... +..++.++.+.+. .+|.|+.+..++.+|..+ ++..++
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~ 280 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNS 280 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCC
Confidence 345678999999999999999999874 5556666666665 468899999999999987 777899
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 199 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~g 199 (375)
|||||||+.+++.++.... ..-+.++|..++. ...+.||++||.++ .+|+||.|
T Consensus 281 ILfIDEIh~L~g~g~~~~g----~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r-- 339 (758)
T PRK11034 281 ILFIDEIHTIIGAGAASGG----QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_pred EEEeccHHHHhccCCCCCc----HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--
Confidence 9999999999876541111 1112223322222 35689999999865 58999998
Q ss_pred cceEEEe-CCCHHHHHHhhhhhcC
Q 017204 200 RMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
||+.+.. .|+.+++.+|++.+..
T Consensus 340 RFq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 340 RFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 8986544 8999999999887643
No 55
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.57 E-value=2e-14 Score=157.32 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=116.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC----------CceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHH-hCCce
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMC 124 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg----------~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~ 124 (375)
....++|+||||||||++|+.+|..+. .+++.++.+.+. .++.|+.+..++.+|.++ + ...++
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~~ 282 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQPI 282 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCCe
Confidence 344789999999999999999999862 456667777765 368899999999999988 4 35789
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDG 199 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~g 199 (375)
||||||++.+.+.+++..+.... .+|... -..+.+.+|+||+.. -.+|+||.|
T Consensus 283 ILfIDEih~l~~~g~~~~~~d~~-----n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r-- 340 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQGDAA-----NLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR-- 340 (852)
T ss_pred EEEEeChHHhccCCCccccccHH-----HHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH--
Confidence 99999999998876422221111 122111 124568899999864 359999999
Q ss_pred cceEEEe-CCCHHHHHHhhhhhcCC----CCC--CHHH---HHHHhcCC------ChhhHHHHH
Q 017204 200 RMEKFYW-APTREDRIGVCKGIFRN----DNV--ADDD---IVKLVDTF------PGQSIDFFG 247 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~~~l~~----~~v--~~~~---la~lt~gf------~gadl~~~~ 247 (375)
||..+.. .|+.+++..|++.+... .++ +.+. ++.++++| ++-.||.+-
T Consensus 341 Rf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlld 404 (852)
T TIGR03345 341 RFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLD 404 (852)
T ss_pred hCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHH
Confidence 8876544 89999999997665532 233 3333 66777776 444565554
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=3.2e-14 Score=140.08 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.++..+|||||||||||++|+++|++++..+..++++.+.. ...+..++.. ...++||||||+|.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 46678999999999999999999999999888777664431 1223333332 34678999999998753
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCC-ccccCCCccc----cCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNP-TCVQLPGMYN----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~-~~v~l~~~~~----~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
.. .+.|...+++. ..+.++.... ....+++.+|++||++..++++|+. ||...+. .|+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 11222222211 0111111100 0122457899999999999999876 7765555 799
Q ss_pred HHHHHHhhhhhcCCCC--CCHHH---HHHHhcCCC
Q 017204 210 REDRIGVCKGIFRNDN--VADDD---IVKLVDTFP 239 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~~--v~~~~---la~lt~gf~ 239 (375)
.+++.+|++......+ ++.+. |++.+.|.+
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 9999999988776554 44443 555555554
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=1.3e-14 Score=158.98 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=107.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
....++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|.++. +...++|
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~I 274 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVI 274 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeE
Confidence 34478999999999999999999997 7788888887776 5688999999999998751 3467899
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCc
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR 200 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gR 200 (375)
|||||++.+.+..++.+.... ..+|.. . -..+.+.+|+||+..+ .+|+||.| |
T Consensus 275 LfIDEih~l~~~~~~~~~~d~-----~~~lkp------------~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--R 332 (857)
T PRK10865 275 LFIDELHTMVGAGKADGAMDA-----GNMLKP------------A---LARGELHCVGATTLDEYRQYIEKDAALER--R 332 (857)
T ss_pred EEEecHHHhccCCCCccchhH-----HHHhcc------------h---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--h
Confidence 999999999876542222111 222211 1 2346789999999876 48999999 8
Q ss_pred ceEEEe-CCCHHHHHHhhhhhcC
Q 017204 201 MEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 201 fd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
|+.++. .|+.+++..|++.+..
T Consensus 333 f~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 333 FQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CCEEEeCCCCHHHHHHHHHHHhh
Confidence 976555 8999999999887654
No 58
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=4.5e-14 Score=154.57 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=122.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGK 122 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~ 122 (375)
..+.+..++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.+|+++ +...
T Consensus 196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~ 271 (821)
T CHL00095 196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENN 271 (821)
T ss_pred cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcC
Confidence 44566789999999999999999999986 4678889988876 578999999999999998 6678
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 197 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR 197 (375)
++|||||||+.+.+..+..+.. -+...|...+ .++.+.+|++|+..+ ..|++|.|
T Consensus 272 ~~ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l---------------~rg~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 272 NIILVIDEVHTLIGAGAAEGAI-----DAANILKPAL---------------ARGELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred CeEEEEecHHHHhcCCCCCCcc-----cHHHHhHHHH---------------hCCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 9999999999998765321111 1222222111 235688999998764 58999998
Q ss_pred CCcceEEEe-CCCHHHHHHhhhhhcC------CCCCCHHH---HHHHhcCCCh------hhHHHHHHHH
Q 017204 198 DGRMEKFYW-APTREDRIGVCKGIFR------NDNVADDD---IVKLVDTFPG------QSIDFFGALR 250 (375)
Q Consensus 198 ~gRfd~~i~-~P~~~~R~~Il~~~l~------~~~v~~~~---la~lt~gf~g------adl~~~~al~ 250 (375)
||..+.. .|+.++...|++.+.. ...++.+. ++.++.+|-+ -.|+++....
T Consensus 332 --Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 332 --RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred --cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHH
Confidence 8887544 7999998888765432 12345444 6677777644 3566554333
No 59
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=4.4e-14 Score=143.12 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~-s~~~Ge~~-~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
...+||+||||||||++|+++|+.++.+|+.++++.+. ..|+|+.. ..+..++..+...+....++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 46899999999999999999999999999999998875 47898854 44556655443334566889999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHHhhc
Q 017204 137 RMGGT-TQYTVNNQMVNATLMNIAD 160 (375)
Q Consensus 137 ~r~~~-~~~~~~~~~v~~~L~~lld 160 (375)
+..+. ....+...-+++.|+++|+
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHh
Confidence 64311 1223334467888999997
No 60
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.54 E-value=7.7e-14 Score=141.01 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=87.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
+..+||+||||||||++|+++|+.++.+|..++++.+. .+|+|.. +..+...+..+...+....++||||||+|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 35899999999999999999999999999999988875 4688985 445555555442333466789999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHHhhcCCccccCC-CccccCCCCCceEEEEeCC
Q 017204 137 RMGGT-TQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 137 ~r~~~-~~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~~~~~~~V~VI~TTN~ 187 (375)
++... ....+...-+++.|+++++. +.+.++ ..-...+..+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc-cceecccCCCccccCCCeEEEEcCCc
Confidence 65311 11223334677888888862 222211 1111223456688888886
No 61
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=9.5e-14 Score=140.01 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=104.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCce-----------------------EEeccCccccCCCCChHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~-----------------------i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
+.+.|.++||+||||+|||++|+++|+.+.+.. ..+... ... -....||.++
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~~--i~i~~iR~l~ 106 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GLS--IGVDEVRELV 106 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence 445789999999999999999999999876531 111111 011 1234588888
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+...-..+...|+||||+|.+... ....|+..++ ++..++++|.+|+.++.|
T Consensus 107 ~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE-------------ep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 107 TIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE-------------EPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred HHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCCeEEEEECChHHC
Confidence 87722112345679999999987432 1234555555 444556777777779999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHH---HHHHHhcCCChhhHHHH
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~---~la~lt~gf~gadl~~~ 246 (375)
.|.+++ |+..+.. .|+.++..+++.... +++.+ .++.++.|.++..+.+.
T Consensus 161 lpTIrS--Rc~~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 161 LPTIRS--RCRHVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred hHHHHh--hCeEEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999987 6655555 788888877775322 34544 47788889888777654
No 62
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=6.9e-14 Score=153.59 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=113.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHh-CCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKM 123 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~-~~p 123 (375)
+....++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|.++ .. ..+
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~ 267 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEGQ 267 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCCC
Confidence 444678899999999999999999986 6678888777775 568899999999999987 43 468
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCC
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD 198 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~ 198 (375)
+|||||||+.+.+....... .-..++|.. . .....+.+|++||..+ .+|+||.|
T Consensus 268 ~ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~------------~---l~~g~i~~IgaTt~~e~r~~~~~d~al~r- 326 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEGA-----MDAGNMLKP------------A---LARGELHCIGATTLDEYRKYIEKDAALER- 326 (852)
T ss_pred eEEEeccHHHhhcCCCCcch-----hHHHHHhch------------h---hhcCceEEEEeCcHHHHHHHhhcCHHHHh-
Confidence 99999999999865431111 111222211 1 2345689999999763 58999999
Q ss_pred CcceEEEe-CCCHHHHHHhhhhhcCC----CC--CCHHH---HHHHhcCCCh
Q 017204 199 GRMEKFYW-APTREDRIGVCKGIFRN----DN--VADDD---IVKLVDTFPG 240 (375)
Q Consensus 199 gRfd~~i~-~P~~~~R~~Il~~~l~~----~~--v~~~~---la~lt~gf~g 240 (375)
||..+.. .|+.+++..|++.+... .+ +..+. ++.++.+|-.
T Consensus 327 -Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 327 -RFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred -cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 8886555 89999999998876433 22 33333 5677777744
No 63
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=9e-14 Score=139.67 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-cCCCC-ChHHHHHHHHHHHHHHH-----------------
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII----------------- 118 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~-s~~~G-e~~~~ir~~F~~A~~~~----------------- 118 (375)
.|++|||+||||||||++|+++|+.++.+|+.++++.+. .+|+| +.+..++.+|..|...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 579999999999999999999999999999999999887 48999 67899999998872100
Q ss_pred --------------------------------------------------------------------------------
Q 017204 119 -------------------------------------------------------------------------------- 118 (375)
Q Consensus 119 -------------------------------------------------------------------------------- 118 (375)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred --------------------------------------HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhc
Q 017204 119 --------------------------------------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160 (375)
Q Consensus 119 --------------------------------------~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld 160 (375)
+..+..||||||||+++.+.+ +....+...-|++.|+.++.
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilE 284 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVE 284 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhcccccccc
Confidence 013456999999999997653 22345666778889988888
Q ss_pred CCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCcceEEEe--CCCHHHHHHhh
Q 017204 161 NPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 217 (375)
Q Consensus 161 ~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il 217 (375)
..+... .+......+|++|++.- .|+.|=|.|. |||-..+. ..+.++...||
T Consensus 285 Gt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 285 GSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred Cceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 432211 22345678889998864 5667777887 89998888 68999988886
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.52 E-value=1.6e-13 Score=141.89 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-h-CCceeeeecccccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDAG 134 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~-~~p~IL~iDEiD~i 134 (375)
.+++.+|||||||||||++|+++|++++..++.+++++.. ....++.+...+..... . ..+.||+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r------~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR------TADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc------cHHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 4588999999999999999999999999999999987643 22345555555422111 1 25789999999988
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhcCCCcceEEEe-CCCHHH
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~-ALlR~gRfd~~i~-~P~~~~ 212 (375)
.+... +-....|+++++ ..+.++|++||++..+++ .|.+ |+..+.. .|+..+
T Consensus 111 ~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65321 001123333333 134578899999999888 5554 5544444 789999
Q ss_pred HHHhhhhhcCCCC--CCHHHHHHHhcCCCh
Q 017204 213 RIGVCKGIFRNDN--VADDDIVKLVDTFPG 240 (375)
Q Consensus 213 R~~Il~~~l~~~~--v~~~~la~lt~gf~g 240 (375)
...+++.++...+ ++.+.+..++....|
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999988886654 555566666655443
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.51 E-value=1.9e-13 Score=132.65 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..+..++||||||||||++|+++|++++..+..+.++.+.. . ..+...+. ....+.||||||++.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~-~~l~~~l~------~~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----P-GDLAAILT------NLEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----c-hhHHHHHH------hcccCCEEEEehHhhhCH
Confidence 34667999999999999999999999998877766543321 1 11222222 134578999999998754
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCC-ccccCCCccc----cCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNP-TCVQLPGMYN----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~-~~v~l~~~~~----~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
.. ...|.+++++- ..+-++.... ....+.+.+|++||++..++++++. ||...+. .|+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 12233333210 0011111100 0123457899999999999999886 7766554 799
Q ss_pred HHHHHHhhhhhcCCC--CCCHHH---HHHHhcCCC
Q 017204 210 REDRIGVCKGIFRND--NVADDD---IVKLVDTFP 239 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~--~v~~~~---la~lt~gf~ 239 (375)
.+++.+|++...... .++.+. |++.+.|.+
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 999999988776544 445454 444555544
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.5e-13 Score=140.63 Aligned_cols=160 Identities=14% Similarity=0.226 Sum_probs=103.9
Q ss_pred cCCchhHHHHHHHHHH----HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc---------------------
Q 017204 32 LYIAPAFMDKLVVHIT----KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------- 86 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~----k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~--------------------- 86 (375)
-|-|..|.|.+....+ ++.+. .-+.|..+|||||||||||++|+++|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~--~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK--SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 3556666666554433 33333 33467789999999999999999999998763
Q ss_pred ---eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 017204 87 ---PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163 (375)
Q Consensus 87 ---~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~ 163 (375)
++.+++. .......+|++.+.+...-..+...|+||||+|.+... . ...|+..++
T Consensus 89 ~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~------------A-~NALLKtLE--- 146 (484)
T PRK14956 89 SSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ------------S-FNALLKTLE--- 146 (484)
T ss_pred Cccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH------------H-HHHHHHHhh---
Confidence 2222221 01124456666665522222456779999999977321 1 234444444
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 164 ~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
+....+++|++||.++.|.++++. ||.++.+ .++.++-.+.++.++...++.
T Consensus 147 ----------EPp~~viFILaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 147 ----------EPPAHIVFILATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred ----------cCCCceEEEeecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 445678899999999999999986 7776666 666777667776666655443
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.8e-13 Score=145.43 Aligned_cols=177 Identities=11% Similarity=0.152 Sum_probs=113.4
Q ss_pred CCchhHHHHHHHHH----HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc----------------------
Q 017204 33 YIAPAFMDKLVVHI----TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------- 86 (375)
Q Consensus 33 ~i~~~~~d~~~~~~----~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~---------------------- 86 (375)
|-|..|.|.+.... +++++. +-+.+..+||+||+|||||++|+++|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~--~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD--GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 44555555443333 333333 34678889999999999999999999998763
Q ss_pred --eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 017204 87 --PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164 (375)
Q Consensus 87 --~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 164 (375)
++.++.+ ...+...||.+.+.+...-......|+||||+|.+... . .+.|+..|+
T Consensus 88 ~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------A-~NALLKtLE---- 144 (830)
T PRK07003 88 VDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------A-FNAMLKTLE---- 144 (830)
T ss_pred ceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH------------H-HHHHHHHHH----
Confidence 2222221 11234456777766521112355679999999977331 1 233444454
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC--HHH---HHHHhcCC
Q 017204 165 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDD---IVKLVDTF 238 (375)
Q Consensus 165 v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~--~~~---la~lt~gf 238 (375)
+...++.+|++||+++.|.+.|+. ||.++-+ .++.++..++|+.++..+++. .+. |++.++|-
T Consensus 145 ---------EPP~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 145 ---------EPPPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred ---------hcCCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 445678999999999999999886 7776666 678888888888888766554 333 44555554
Q ss_pred ChhhHHH
Q 017204 239 PGQSIDF 245 (375)
Q Consensus 239 ~gadl~~ 245 (375)
-...|.+
T Consensus 214 mRdALsL 220 (830)
T PRK07003 214 MRDALSL 220 (830)
T ss_pred HHHHHHH
Confidence 4444443
No 68
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.50 E-value=3.4e-13 Score=131.53 Aligned_cols=177 Identities=16% Similarity=0.259 Sum_probs=110.6
Q ss_pred cccCCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHH
Q 017204 30 DGLYIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107 (375)
Q Consensus 30 ~~~~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~i 107 (375)
..-|-|..|.|.+.....+..+. ....+.|..+||+||||+|||++|++++++++.+++.+++++ . . ...+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i 84 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFV 84 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHH
Confidence 34466666666544333332221 113456788888999999999999999999999998888875 1 1 2233
Q ss_pred HHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 017204 108 RQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 186 (375)
Q Consensus 108 r~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 186 (375)
+........... ...+.||+|||+|.+... ..+..|..+++ ....++.+|+|||
T Consensus 85 ~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n 139 (316)
T PHA02544 85 RNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFME-------------AYSKNCSFIITAN 139 (316)
T ss_pred HHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHH-------------hcCCCceEEEEcC
Confidence 332222211111 246789999999876221 11234444444 2235578999999
Q ss_pred CCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhh-------cCCC--CCCHHHHHHHhcCCCh
Q 017204 187 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGI-------FRND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 187 ~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~-------l~~~--~v~~~~la~lt~gf~g 240 (375)
.++.+++++++ ||..+.. .|+.+++.+|++.+ +... .++.+.+..++....+
T Consensus 140 ~~~~l~~~l~s--R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 140 NKNGIIEPLRS--RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred ChhhchHHHHh--hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 99999999987 7766655 89999988775433 2222 4455555555544333
No 69
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.49 E-value=3.5e-13 Score=133.27 Aligned_cols=123 Identities=21% Similarity=0.208 Sum_probs=93.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~ 139 (375)
-.++||||||||||++|++||...+..|..+|+.. .+.+-||.++++|......++..|||||||-.+-..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-- 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-- 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--
Confidence 46899999999999999999999999999998763 236789999999966666677899999999654322
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCcceEEEe-CCCHHHHHHh
Q 017204 140 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 216 (375)
Q Consensus 140 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~I 216 (375)
-+.+|+-. .+.+.|++|++| |-.-.|.+||+. |+-.+.. .-+.++...+
T Consensus 120 -----------QQD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~~~ 171 (436)
T COG2256 120 -----------QQDALLPH---------------VENGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDIKKL 171 (436)
T ss_pred -----------hhhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHHHHH
Confidence 12334322 234557777776 666789999997 6666666 5678887777
Q ss_pred hhh
Q 017204 217 CKG 219 (375)
Q Consensus 217 l~~ 219 (375)
++.
T Consensus 172 l~r 174 (436)
T COG2256 172 LKR 174 (436)
T ss_pred HHH
Confidence 766
No 70
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=3.2e-13 Score=135.81 Aligned_cols=154 Identities=22% Similarity=0.265 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc-CCCC-ChHHHHHHHHHHHHHH------------------
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADI------------------ 117 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s-~~~G-e~~~~ir~~F~~A~~~------------------ 117 (375)
.|.++||+||||||||++|+++|+.++.+|+.++.+++.. +|+| +.+..++.+|..|..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998875 7999 6688999999888200
Q ss_pred --------------------------------------------------------------------------------
Q 017204 118 -------------------------------------------------------------------------------- 117 (375)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (375)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred -----------------------------------HH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcC
Q 017204 118 -----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 161 (375)
Q Consensus 118 -----------------------------------~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~ 161 (375)
+. .....||||||||+++.+.++ ....+...-|++.|+.++..
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG 287 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEG 287 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhccccccccc
Confidence 01 124569999999999977542 23456667789999888884
Q ss_pred CccccCCCccccCCCCCceEEEEe----CCCCCCChhhcCCCcceEEEe--CCCHHHHHHhh
Q 017204 162 PTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 217 (375)
Q Consensus 162 ~~~v~l~~~~~~~~~~~V~VI~TT----N~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il 217 (375)
.+. +. .+......+|++||+. ..|+.|-|.|. |||-..+. ..+.++..+||
T Consensus 288 ~~v-~~--k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 288 STV-ST--KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred cee-ee--cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 322 11 2234566888999876 35677778887 79998888 68999998886
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.1e-13 Score=143.22 Aligned_cols=177 Identities=12% Similarity=0.170 Sum_probs=113.7
Q ss_pred CCchhHHHHHHHH----HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc----------------------
Q 017204 33 YIAPAFMDKLVVH----ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------- 86 (375)
Q Consensus 33 ~i~~~~~d~~~~~----~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~---------------------- 86 (375)
|-|..|.|.+... .+++++. ..+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~--~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALE--QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHH--hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 4455555544332 2333333 44678899999999999999999999998762
Q ss_pred -------eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 017204 87 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 159 (375)
Q Consensus 87 -------~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~ll 159 (375)
++.++++ ...+...||++.+.+...-..++..|+||||+|.+... . .+.|+..|
T Consensus 88 ~aG~hpDviEIdAa------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------A-aNALLKTL 148 (700)
T PRK12323 88 DAGRFVDYIEMDAA------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------A-FNAMLKTL 148 (700)
T ss_pred HcCCCCcceEeccc------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------H-HHHHHHhh
Confidence 1222221 01234567777766522222556689999999977321 1 23454555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCH--HH---HHH
Q 017204 160 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DD---IVK 233 (375)
Q Consensus 160 d~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~--~~---la~ 233 (375)
+ +...++.+|++||.++.|.+.++. ||.++-. .++.++..+.++.++...++.. +. |++
T Consensus 149 E-------------EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 149 E-------------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred c-------------cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 456778999999999999999986 7766655 6788888888777766554443 32 555
Q ss_pred HhcCCChhhHHH
Q 017204 234 LVDTFPGQSIDF 245 (375)
Q Consensus 234 lt~gf~gadl~~ 245 (375)
.++|-....+.+
T Consensus 214 ~A~Gs~RdALsL 225 (700)
T PRK12323 214 AAQGSMRDALSL 225 (700)
T ss_pred HcCCCHHHHHHH
Confidence 555544444443
No 72
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=1.7e-13 Score=140.68 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=115.7
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCcc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 95 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l 95 (375)
..|+|+|++.+. -.......++.+...++ .....++||||||||||+|++++++++ +..++.+++.++
T Consensus 117 ~~~tfd~fv~g~------~n~~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 117 PKYTFDNFVVGK------SNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCCcccccccCC------CcHHHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 455666654332 13345556666665554 234569999999999999999999997 566888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.+.+...-.......|.. .-..+.+|+|||+|.+.++.. ++ +.|..+++ .. ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~-----~~~~~dlLiiDDi~~l~~~~~--~~---------~~l~~~~n--------~l---~~ 242 (450)
T PRK00149 190 TNDFVNALRNNTMEEFKE-----KYRSVDVLLIDDIQFLAGKER--TQ---------EEFFHTFN--------AL---HE 242 (450)
T ss_pred HHHHHHHHHcCcHHHHHH-----HHhcCCEEEEehhhhhcCCHH--HH---------HHHHHHHH--------HH---HH
Confidence 543322111000111221 123578999999998866532 11 12222222 11 01
Q ss_pred CCCceEEEEeCC-CCC---CChhhcCCCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChhhHHH
Q 017204 176 NPRVPIIVTGND-FST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 176 ~~~V~VI~TTN~-~~~---Ld~ALlR~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~gadl~~ 245 (375)
..+ .+|+|+|. |.. +++.|.. ||. ..+. .|+.++|.+|++...... .++.+.+.-+++.+.+.--+.
T Consensus 243 ~~~-~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 243 AGK-QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred CCC-cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 122 34555554 444 6677764 775 2333 899999999999887654 567777888888877654344
Q ss_pred HHHHH
Q 017204 246 FGALR 250 (375)
Q Consensus 246 ~~al~ 250 (375)
.++|.
T Consensus 320 ~~~l~ 324 (450)
T PRK00149 320 EGALN 324 (450)
T ss_pred HHHHH
Confidence 44443
No 73
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=2e-13 Score=138.11 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHH
Q 017204 40 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREA 114 (375)
Q Consensus 40 d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A 114 (375)
.......++.+...++ .....++||||||+|||+|++++++++ +..++.+++.++...+...-...-...|...
T Consensus 118 n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~ 196 (405)
T TIGR00362 118 NRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEK 196 (405)
T ss_pred HHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445566666665554 345679999999999999999999987 6778888887765432211000000112111
Q ss_pred HHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCC---
Q 017204 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFST--- 190 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~~~~--- 190 (375)
-..+.+|+|||+|.+.++.. . +..|..+++ .. ....+ .+|+|+| .|..
T Consensus 197 -----~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n--------~~---~~~~~-~iiits~~~p~~l~~ 248 (405)
T TIGR00362 197 -----YRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN--------AL---HENGK-QIVLTSDRPPKELPG 248 (405)
T ss_pred -----HHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH--------HH---HHCCC-CEEEecCCCHHHHhh
Confidence 12367999999998865431 1 122333333 11 01122 3445555 4444
Q ss_pred CChhhcCCCcceE--EEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 191 LYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 191 Ld~ALlR~gRfd~--~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
+++.|.. ||.. .+. .|+.++|.+|++..+... .++.+.+.-++..+.+.
T Consensus 249 l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 249 LEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred hhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 5566764 7753 333 899999999999887654 45666676677666654
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=7.9e-13 Score=136.23 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=97.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------ceEEeccCccccCCCCChHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~F~ 112 (375)
+.|.++|||||||||||++|+++|+.+++ .++.++++. ..+...+|.+..
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence 56778999999999999999999999875 233343321 122455676666
Q ss_pred HHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 017204 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 192 (375)
.+...-..+...||||||+|.+... ....|+..++ ...+.+++|++||.+..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 5521111345679999999876321 1234445555 2334577777888888999
Q ss_pred hhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcC
Q 017204 193 APLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVDT 237 (375)
Q Consensus 193 ~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~g 237 (375)
++++. |+..+-. .|+.++...+++...... .++.+.+..++..
T Consensus 162 ~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 162 PTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99987 6655444 788888888888777554 4555555555543
No 75
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=1.1e-12 Score=125.47 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=91.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc------cccCCCCChHHHHHHHHHHHH--------------HHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREAA--------------DII 118 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~------l~s~~~Ge~~~~ir~~F~~A~--------------~~~ 118 (375)
...+||+||||||||++|+++|+.+|.+++.+++.. +...|.|...+.+..-|.... -+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 346899999999999999999999999999886543 333333322222211111000 000
Q ss_pred H-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc----CCCCCceEEEEeCCC-----
Q 017204 119 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDF----- 188 (375)
Q Consensus 119 ~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~----~~~~~V~VI~TTN~~----- 188 (375)
. .....+|+|||||.+.. .++..|+.+++.. .+.+++.... ...+...||+|+|..
T Consensus 101 ~A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~-~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEG-VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCC-eEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 0 22456999999986432 2345666677632 2222222111 122456799999976
Q ss_pred CCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhc
Q 017204 189 STLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 221 (375)
Q Consensus 189 ~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l 221 (375)
..++++|++ ||-.... .|+.++-.+|++.++
T Consensus 167 ~~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 367899997 7754333 899999999998875
No 76
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=2.4e-12 Score=131.88 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=112.7
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCC---CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPN---IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 94 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~---~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~ 94 (375)
..|+|+|++.+. .. ......++.+...++ ......++||||||+|||+|++++++++ +..++.++...
T Consensus 106 ~~~tFdnFv~g~--~N----~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 106 PLMTFANFLVTP--EN----DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred ccccccceeeCC--cH----HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 346667765432 22 233344444443221 1234679999999999999999999986 67788888766
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 017204 95 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174 (375)
Q Consensus 95 l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~ 174 (375)
+...+...-...-...|... .....||+|||++.+.++.. ++ +.+-.++..+.+
T Consensus 180 f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~--~q-----eelf~l~N~l~~-------------- 233 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGA--TQ-----EEFFHTFNSLHT-------------- 233 (445)
T ss_pred HHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChh--hH-----HHHHHHHHHHHH--------------
Confidence 54322110000000122221 34578999999998765432 11 122222211111
Q ss_pred CCCCceEEEEeCC-C---CCCChhhcCCCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChhhHH
Q 017204 175 ENPRVPIIVTGND-F---STLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 175 ~~~~V~VI~TTN~-~---~~Ld~ALlR~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~gadl~ 244 (375)
.+..+|+|||. | ..+++.|.+ ||. ..+. .|+.++|.+|++...... .++.+.+.-++..+++.--+
T Consensus 234 --~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~ 309 (445)
T PRK12422 234 --EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKS 309 (445)
T ss_pred --CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 12356777765 3 356788876 664 4444 799999999998877655 46666677777777754333
Q ss_pred HHHHHHh
Q 017204 245 FFGALRA 251 (375)
Q Consensus 245 ~~~al~~ 251 (375)
..+++..
T Consensus 310 L~g~l~~ 316 (445)
T PRK12422 310 LLHALTL 316 (445)
T ss_pred HHHHHHH
Confidence 3444443
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.43 E-value=2.4e-12 Score=130.78 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=95.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 138 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r 138 (375)
+..++||||||||||++|+++|+.++..|+.+++... ..+.++.+++.+......+...||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 3479999999999999999999999999999887532 24567778877744334557889999999976321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCcceEEEe-CCCHHHHHH
Q 017204 139 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 215 (375)
Q Consensus 139 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~ 215 (375)
.+..|+..++ ...+++|++| |....++++|++ ||..+.. .|+.++...
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQ 158 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHH
Confidence 1233433333 1345666654 445579999987 6644444 778888888
Q ss_pred hhhhhcCC----C-CCCHHHHHHHhc
Q 017204 216 VCKGIFRN----D-NVADDDIVKLVD 236 (375)
Q Consensus 216 Il~~~l~~----~-~v~~~~la~lt~ 236 (375)
+++..+.. . .++.+.+..+..
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~ 184 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALAR 184 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 88776543 1 455554444433
No 78
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.43 E-value=2.2e-12 Score=122.72 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHhhhh------CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHH
Q 017204 35 APAFMDKLVVHITKNFMS------LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108 (375)
Q Consensus 35 ~~~~~d~~~~~~~k~~l~------~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir 108 (375)
|..|.|-+..+-+|+-|+ ...-...-.+|||||||.|||+||+.||+|+|.++-..+++.+. .+..+ -
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-----K~gDl-a 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-----KPGDL-A 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-----ChhhH-H
Confidence 445555555554444332 12335667899999999999999999999999999999998765 22221 1
Q ss_pred HHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--------CCCCCce
Q 017204 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--------EENPRVP 180 (375)
Q Consensus 109 ~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~--------~~~~~V~ 180 (375)
.++. .-....|||||||-.+.+. +.+.|.-.+++ .++|=+.+. -+.+.--
T Consensus 96 aiLt------~Le~~DVLFIDEIHrl~~~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 96 AILT------NLEEGDVLFIDEIHRLSPA-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred HHHh------cCCcCCeEEEehhhhcChh-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCee
Confidence 1221 2345679999999766443 22333333221 111111111 1335557
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CCHH---HHHHHhcCCChhh
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQS 242 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~~~---~la~lt~gf~gad 242 (375)
+|++|-+...|..+|+- ||-.... ..+.++..+|++......+ ++.+ +||+.+.|.+-=.
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHH
Confidence 99999999999999975 6666555 7999999999876655443 3333 3777777766533
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.3e-12 Score=137.59 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=95.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQR 110 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 110 (375)
..+.+..+||+||||||||++|+++|+.+++. ++.++++. ......||.+
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs------~~~VddIRel 106 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS------RTKVEDTREL 106 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc------cCCHHHHHHH
Confidence 44668899999999999999999999998762 23333321 1124456666
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
...+.-.-..++..|+||||+|.+... ....|+..++ +....+.+|++||++..
T Consensus 107 i~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLE-------------EPP~~v~FILaTtd~~k 160 (702)
T PRK14960 107 LDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLE-------------EPPEHVKFLFATTDPQK 160 (702)
T ss_pred HHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh-------------cCCCCcEEEEEECChHh
Confidence 665421112456689999999976432 1234555555 34456788889999999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
+++.++. |+.++-. .++.++..+.++.++...++.
T Consensus 161 Ip~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 161 LPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred hhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 9988874 7766655 788888888888777766544
No 80
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=1.6e-12 Score=136.40 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=110.9
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCcc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 95 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l 95 (375)
..|+|+|++.+.. ..| ....++.....++. ....|+|||++|||||+|+++|++++ +..+++++..++
T Consensus 283 ~~~TFDnFvvG~s--N~~----A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGAS--NRF----AHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCc--cHH----HHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4466777664442 222 22333333332332 22349999999999999999999986 567888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.+.+...........|.+ +-..+.+|+||||+.+.++.. .+ ..+..++..+.+
T Consensus 356 ~~el~~al~~~~~~~f~~-----~y~~~DLLlIDDIq~l~gke~--tq-----eeLF~l~N~l~e--------------- 408 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRR-----RYREMDILLVDDIQFLEDKES--TQ-----EEFFHTFNTLHN--------------- 408 (617)
T ss_pred HHHHHHHHHhccHHHHHH-----HhhcCCEEEEehhccccCCHH--HH-----HHHHHHHHHHHh---------------
Confidence 654432111111122332 133468999999998876532 11 122222221111
Q ss_pred CCCceEEEEeCCC----CCCChhhcCCCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 176 NPRVPIIVTGNDF----STLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 176 ~~~V~VI~TTN~~----~~Ld~ALlR~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
.+..||+|||.+ ..+++.|.. ||. ..+. .|+.+.|.+|++..+... .++.+.+.-++..++..
T Consensus 409 -~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 409 -ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred -cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 123466788864 357788876 654 3334 799999999999887765 45566666677776654
No 81
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.40 E-value=1.7e-13 Score=123.15 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=87.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC----ceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~----~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
|-..+||.||+|||||.+|+++|+.+.. +++.++.+++.. .++....+..++..+..........||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3356889999999999999999999996 999999998876 1112223444444432222333334999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
+..+. .....+....+++.|++++++-+... +........+++||+|||--..
T Consensus 80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d--~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTD--SYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEE--TTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccc--cccchhhHHHHHHHHHHHhcccceec--ccceEEEeCCceEEEecccccc
Confidence 98873 34466777888999999998432221 1112345688999999997653
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=1.7e-12 Score=127.47 Aligned_cols=146 Identities=12% Similarity=0.170 Sum_probs=93.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccCCCCChHHHHHHHHHHHHHH---HHhCCceeeeecccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLMINDLD 132 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~---~~~~~p~IL~iDEiD 132 (375)
.+|||||||||||++|+++|+++.. .++.+++++.. +...++...+..... .......|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 4899999999999999999999732 34555555322 122344444332110 012356799999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 211 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~ 211 (375)
.+.... ++.|...++ .......+|.+||....+.++|+. |+..+-. .|+.+
T Consensus 110 ~lt~~a-------------q~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~ 161 (319)
T PLN03025 110 SMTSGA-------------QQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQ 161 (319)
T ss_pred hcCHHH-------------HHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhhcccCCCCCHH
Confidence 874321 234444444 222335678889999999999886 5644333 78889
Q ss_pred HHHHhhhhhcCCCC--CCHHHHHHHhcCCCh
Q 017204 212 DRIGVCKGIFRNDN--VADDDIVKLVDTFPG 240 (375)
Q Consensus 212 ~R~~Il~~~l~~~~--v~~~~la~lt~gf~g 240 (375)
+...+++.++...+ ++.+.+..++....|
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 98888888876654 456666666665444
No 83
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.2e-12 Score=134.00 Aligned_cols=183 Identities=16% Similarity=0.301 Sum_probs=106.8
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCcc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 95 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l 95 (375)
..|+|+|++.+ +. .......++.+...++. ...++||||||||||+|++++++++ +..++.+++.++
T Consensus 100 ~~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 100 PDYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CCCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 34666776543 21 23344455555554553 4469999999999999999999986 456777887765
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 017204 96 ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174 (375)
Q Consensus 96 ~s~~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~ 174 (375)
.+.+...- ...+. -|... -...+.+|+|||++.+.++.. .+ ..+..++..+.+
T Consensus 172 ~~~~~~~~~~~~~~-~f~~~----~~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~-------------- 225 (440)
T PRK14088 172 LNDLVDSMKEGKLN-EFREK----YRKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD-------------- 225 (440)
T ss_pred HHHHHHHHhcccHH-HHHHH----HHhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH--------------
Confidence 53321100 00011 12211 123688999999998866432 11 112222211111
Q ss_pred CCCCceEEEEe-CCCCC---CChhhcCCCcce--EE--EeCCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 175 ENPRVPIIVTG-NDFST---LYAPLIRDGRME--KF--YWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 175 ~~~~V~VI~TT-N~~~~---Ld~ALlR~gRfd--~~--i~~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
..+ .+|+|| +.|.. +.+.+.. ||. .. +..|+.+.|.+|++...... .++.+.+.-++..+++.
T Consensus 226 -~~k-~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 226 -SGK-QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred -cCC-eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 122 355555 55554 4455654 554 23 33899999999998887643 56677677777777664
No 84
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.1e-11 Score=123.05 Aligned_cols=166 Identities=14% Similarity=0.261 Sum_probs=97.8
Q ss_pred cccccCCchhHHHH--HHH---HHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CceEEeccC
Q 017204 28 TIDGLYIAPAFMDK--LVV---HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAG 93 (375)
Q Consensus 28 ~~~~~~i~~~~~d~--~~~---~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---------~~~i~vs~s 93 (375)
.+...|+|+.|..+ -.. ...++.+. + ..|..++|+||||||||++++++++++. +.++.+++.
T Consensus 7 ~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILR--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred hCCCCCCCCCCCCcHHHHHHHHHHHHHHHc--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 35566777765332 111 12222221 2 4566799999999999999999998763 456777765
Q ss_pred ccccC----------CC--C-------Ch-HHHHHHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHH
Q 017204 94 ELESG----------NA--G-------EP-AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152 (375)
Q Consensus 94 ~l~s~----------~~--G-------e~-~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~ 152 (375)
...+. .. | .+ .+.++.+++. +. ...+.||+|||+|.+.+... ..+.
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~vlvIDE~d~L~~~~~---------~~L~ 150 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKE----LNERGDSLIIVLDEIDYLVGDDD---------DLLY 150 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH----HHhcCCeEEEEECchhhhccCCc---------HHHH
Confidence 43321 10 1 11 1222333332 23 46688999999999973211 1222
Q ss_pred HHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC---CCChhhcCCCcce-EEEe--CCCHHHHHHhhhhhcC
Q 017204 153 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 153 ~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALlR~gRfd-~~i~--~P~~~~R~~Il~~~l~ 222 (375)
.|+.+.+ .......++.+|++||+++ .+++.+.+ ||. ..+. +++.++..+|++..+.
T Consensus 151 -~l~~~~~----------~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 151 -QLSRARS----------NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred -hHhcccc----------ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1222111 1112346789999999986 47777765 443 2233 7899999999887764
No 85
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=6.2e-12 Score=126.20 Aligned_cols=193 Identities=15% Similarity=0.246 Sum_probs=108.3
Q ss_pred ccccccCCchhHH--HHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccC-
Q 017204 27 NTIDGLYIAPAFM--DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG- 98 (375)
Q Consensus 27 ~~~~~~~i~~~~~--d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~- 98 (375)
+.+...++|+.|. +.-+..+...+-.......|..++||||||||||++++.+++++ ++.++.+++....+.
T Consensus 21 ~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 21 EVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred hhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4455667888773 33333333322121112345578999999999999999999987 567788877643221
Q ss_pred ---------CCC----ChHHHHHHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 017204 99 ---------NAG----EPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164 (375)
Q Consensus 99 ---------~~G----e~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 164 (375)
..+ ........++....+.+. ...+.||+|||+|.+....+ . ..+. .|+.+++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---~-----~~l~-~l~~~~~---- 167 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---N-----DVLY-SLLRAHE---- 167 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---c-----hHHH-HHHHhhh----
Confidence 111 011112233333333334 45678999999999873221 1 2222 2222222
Q ss_pred ccCCCccccCCCCCceEEEEeCCCC---CCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCC----CCCCHHH---HHH
Q 017204 165 VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN----DNVADDD---IVK 233 (375)
Q Consensus 165 v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~----~~v~~~~---la~ 233 (375)
. ....++.+|+++|..+ .+++.+..+.+...+.+ +++.++..+|++..+.. ..++.+. +++
T Consensus 168 ----~----~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 168 ----E----YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred ----c----cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 1 1223788999999864 46676654322233333 67899999998776532 2344433 455
Q ss_pred HhcCCCh
Q 017204 234 LVDTFPG 240 (375)
Q Consensus 234 lt~gf~g 240 (375)
.+.+.+|
T Consensus 240 ~~~~~~G 246 (394)
T PRK00411 240 LTAREHG 246 (394)
T ss_pred HHHHhcC
Confidence 5544333
No 86
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.9e-12 Score=128.06 Aligned_cols=147 Identities=13% Similarity=0.172 Sum_probs=91.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec--c--------------Cccc--cCCCCChHHHHHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS--A--------------GELE--SGNAGEPAKLIRQRYREAADII 118 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs--~--------------s~l~--s~~~Ge~~~~ir~~F~~A~~~~ 118 (375)
+.|..+||+||||+|||++|+++|+++.+...... + .++. +.........++.+...+...-
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p 115 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP 115 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc
Confidence 57888999999999999999999999874311100 0 0111 0000122345666665541000
Q ss_pred HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCC
Q 017204 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 198 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~ 198 (375)
..+...|+||||+|.+... . ...|+..++ +....+.+|++|+.++.+.+++..
T Consensus 116 ~~~~~kviIIDEa~~l~~~------------a-~naLLk~lE-------------e~~~~~~fIl~t~~~~~l~~tI~S- 168 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSRH------------S-FNALLKTLE-------------EPPQHIKFILATTDVEKIPKTILS- 168 (363)
T ss_pred ccCCceEEEEEChhhcCHH------------H-HHHHHHHHh-------------cCCCCeEEEEEcCChHhhhHHHHh-
Confidence 1234569999999876321 1 123444444 334566788888889999999875
Q ss_pred CcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHH
Q 017204 199 GRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 231 (375)
Q Consensus 199 gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~l 231 (375)
|+..+-. .|+.++..++++.++...+ ++.+.+
T Consensus 169 -Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al 203 (363)
T PRK14961 169 -RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYAL 203 (363)
T ss_pred -hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 6654444 7889999999888776655 454443
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=3e-12 Score=120.03 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=87.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
.++||||||||||+|++++|+++ +.....++..... ......++. -.+..+|+|||++.+.++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIGN 106 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcCC
Confidence 58999999999999999999986 3344444432111 011122222 234579999999988654
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCCCC---hhhcCCCcceEEEe--CCCHH
Q 017204 138 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYW--APTRE 211 (375)
Q Consensus 138 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~~~~Ld---~ALlR~gRfd~~i~--~P~~~ 211 (375)
.. . ...|.++++ .. ....+.++|.|+| .|..++ +.|.++.+....+. .|+.+
T Consensus 107 ~~--~---------~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 107 EE--W---------ELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hH--H---------HHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 32 1 112333333 11 1112234444454 566655 78887555555555 89999
Q ss_pred HHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 212 DRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 212 ~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
+|.+|++...... .++.+.+.-++..+++.
T Consensus 165 ~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 165 QKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 9999998776544 56666676677666653
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=3.1e-12 Score=135.59 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.+.+..+||+||||||||++|+++|+.+++. ++.++++. ......+|++.
T Consensus 35 ~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li 108 (647)
T PRK07994 35 GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELL 108 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHH
Confidence 3578889999999999999999999998773 12222211 01234566666
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+...-..+...|+||||+|.+... ..+.|+..+. +....+.+|++|+++..|
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NALLKtLE-------------EPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHhCCHH-------------HHHHHHHHHH-------------cCCCCeEEEEecCCcccc
Confidence 65521112456679999999976431 1234555555 555678888889999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHH--H---HHHHhcCCChhhHH
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD--D---IVKLVDTFPGQSID 244 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~--~---la~lt~gf~gadl~ 244 (375)
.+.++. ||..+.. .++.++-...++.++...++..+ . |++.++|-.+..+.
T Consensus 163 l~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 163 PVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred chHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999875 7755555 67888888888777765544433 2 55555554444333
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.38 E-value=6.2e-12 Score=136.27 Aligned_cols=141 Identities=15% Similarity=0.196 Sum_probs=96.0
Q ss_pred CcE-EEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC------------CCCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 59 PLI-LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 59 p~g-lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~------------~~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
|.+ +||+||||||||++|+++|+.++.+++.++.+++.++ |+|.... ..+.+. ++....+|
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~--~~l~~~----~~~~p~~V 556 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG--GLLTEA----VRKHPHCV 556 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh--hHHHHH----HHhCCCeE
Confidence 554 7899999999999999999999999999988876432 3332111 112222 25566789
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----------------
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------------- 189 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~---------------- 189 (375)
|||||+|++.+. +...|++++|+-... ++.....+..+++||+|||...
T Consensus 557 vllDEieka~~~-------------~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~ 621 (731)
T TIGR02639 557 LLLDEIEKAHPD-------------IYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVE 621 (731)
T ss_pred EEEechhhcCHH-------------HHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence 999999976432 456777888832211 1111223456789999999742
Q ss_pred ---------CCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC
Q 017204 190 ---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 190 ---------~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~ 222 (375)
.+.|+|+ +|+|.++. ..+.++..+|++..+.
T Consensus 622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 2566676 59997776 5688889888776653
No 90
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.5e-12 Score=137.86 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceE-Ee-ccC------ccccC-------CCC---ChHHHHH
Q 017204 47 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-MM-SAG------ELESG-------NAG---EPAKLIR 108 (375)
Q Consensus 47 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i-~v-s~s------~l~s~-------~~G---e~~~~ir 108 (375)
+++++. .-+.|..+||+||||||||++|+++|+.+++.-. .- .+. .+.+. +-+ .....||
T Consensus 28 LknaI~--~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIR 105 (944)
T PRK14949 28 LTNALT--QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTR 105 (944)
T ss_pred HHHHHH--hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHH
Confidence 444443 3367888999999999999999999999877411 00 000 00000 001 1234567
Q ss_pred HHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 109 ~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
.+...+...-..+...|+||||+|.+.. -....|+..+. +....+.+|++|+.+
T Consensus 106 eLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE-------------EPP~~vrFILaTTe~ 159 (944)
T PRK14949 106 ELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE-------------EPPEHVKFLLATTDP 159 (944)
T ss_pred HHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-------------ccCCCeEEEEECCCc
Confidence 6666552211245667999999997732 12245555555 455667888889999
Q ss_pred CCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHH--H---HHHHhcCCChhhH
Q 017204 189 STLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD--D---IVKLVDTFPGQSI 243 (375)
Q Consensus 189 ~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~--~---la~lt~gf~gadl 243 (375)
..|.+.|+. ||.++-. .++.++..+.++.++...++..+ . |++.++|-.+..+
T Consensus 160 ~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 160 QKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 999988886 7755555 66788877777776655544433 3 5555555444333
No 91
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=5.1e-12 Score=131.05 Aligned_cols=168 Identities=14% Similarity=0.192 Sum_probs=105.9
Q ss_pred cCCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec------------cCcccc
Q 017204 32 LYIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS------------AGELES 97 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs------------~s~l~s 97 (375)
-|-|..|.|.+....+...+. ....+.|..+||+||||||||++|+++|+.+++...... +-.+.+
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 355666766554443333322 123467889999999999999999999999876321100 000000
Q ss_pred C----------CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccC
Q 017204 98 G----------NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167 (375)
Q Consensus 98 ~----------~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l 167 (375)
. -...+...|+.+.+.+...--.+...|+||||+|.+.. .. ...|+..++
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a-~naLLk~LE------- 153 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GA-FNALLKTLE------- 153 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HH-HHHHHHHHh-------
Confidence 0 01123567788887762111134567999999987632 11 223444444
Q ss_pred CCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 168 ~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
+..+.+.+|++|+.++.++++++. |+.++-. .++.++...+++.++...++.
T Consensus 154 ------epp~~~vfI~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 154 ------EPPPHIIFIFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred ------hcCCCEEEEEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 345567888888899999999886 6654434 789999999998888766543
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=5.3e-12 Score=133.86 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=107.7
Q ss_pred CCchhHHHHHHHH----HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE-------------eccC--
Q 017204 33 YIAPAFMDKLVVH----ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAG-- 93 (375)
Q Consensus 33 ~i~~~~~d~~~~~----~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~-------------vs~s-- 93 (375)
|-|..|.|.+... .+++++. .-+.|.++||+||||||||++|+++|+++++.-.. +..+
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~--~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALD--EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHH--cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 4455555544333 3334443 34678899999999999999999999998653110 0000
Q ss_pred -cc--ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc
Q 017204 94 -EL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 170 (375)
Q Consensus 94 -~l--~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~ 170 (375)
++ .+...+.+...||.++..+...-......||||||+|.+.. .. ...|+..++
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A-~NALLKtLE---------- 144 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SA-FNAMLKTLE---------- 144 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HH-HHHHHHHHH----------
Confidence 11 01111233456777777652111235567999999986532 11 123445555
Q ss_pred cccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC--HHHHHHHh
Q 017204 171 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLV 235 (375)
Q Consensus 171 ~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~--~~~la~lt 235 (375)
+....+.+|++||++..+.+.++ +||-.+-. .++.++....++.++...++. .+.+..+.
T Consensus 145 ---EPp~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia 207 (709)
T PRK08691 145 ---EPPEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG 207 (709)
T ss_pred ---hCCCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 34456788999999999999987 47755444 788888888888888776554 33344333
No 93
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=5.8e-12 Score=136.19 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=93.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceeeeecc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s-----~~~Ge~~~~i----r~~F~~A~~~~~~~~p~IL~iDE 130 (375)
..+||+||||||||++|+++|+.++.+++.++.+++.. +.+|.+...+ ...+..+ ++....+||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE 565 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE 565 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence 36899999999999999999999999999998887643 2223211000 1122222 2455679999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC----------------------
Q 017204 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------------- 188 (375)
Q Consensus 131 iD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---------------------- 188 (375)
||++.+ .+.+.|++++|+-.... +........+++||+|||.-
T Consensus 566 ieka~~-------------~v~~~LLq~ld~G~ltd--~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T PRK11034 566 IEKAHP-------------DVFNLLLQVMDNGTLTD--NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_pred HhhhhH-------------HHHHHHHHHHhcCeeec--CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence 998742 25677888888432211 11112344788999999932
Q ss_pred ---CCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhc
Q 017204 189 ---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 221 (375)
Q Consensus 189 ---~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l 221 (375)
..+.|+|+. |+|.++. ..+.++..+|+...+
T Consensus 631 ~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 631 EIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 235677774 8987666 567777888876544
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.36 E-value=1.4e-11 Score=131.99 Aligned_cols=186 Identities=13% Similarity=0.161 Sum_probs=109.1
Q ss_pred ccccCCchhHH--HHHHH---HHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccC
Q 017204 29 IDGLYIAPAFM--DKLVV---HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAG 93 (375)
Q Consensus 29 ~~~~~i~~~~~--d~~~~---~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s 93 (375)
+...|+|+.+. |.-+. ..++..+. +..+...|+|+|+||||||.+++.|.+++ .+.++.|++.
T Consensus 748 L~~DYVPD~LPhREeEIeeLasfL~paIk--gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHGFLESGIK--QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHHHHHHHHh--cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 44557777652 22122 22233332 33344556799999999999999998876 2556778875
Q ss_pred ccccCC----------------CC-ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHH
Q 017204 94 ELESGN----------------AG-EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 156 (375)
Q Consensus 94 ~l~s~~----------------~G-e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~ 156 (375)
.+...+ .| .+...+..+|.... -......||+|||||.+..+. +..|.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~--k~~r~v~IIILDEID~L~kK~-------------QDVLY 890 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK--KDNRNVSILIIDEIDYLITKT-------------QKVLF 890 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh--cccccceEEEeehHhhhCccH-------------HHHHH
Confidence 543221 01 12234445554330 013446799999999987642 12344
Q ss_pred HhhcCCccccCCCccccCCCCCceEEEEeCC---CCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCC--CCCHHH
Q 017204 157 NIADNPTCVQLPGMYNKEENPRVPIIVTGND---FSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDD 230 (375)
Q Consensus 157 ~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~---~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~--~v~~~~ 230 (375)
++.+ |......+|.||+++|. ++.|+|.+..+.....+.+ +++.+++.+|++..+... -++.+.
T Consensus 891 nLFR----------~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 891 TLFD----------WPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred HHHH----------HhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 4443 11123467899999997 5567777765444444445 889999999988776532 344444
Q ss_pred ---HHHHhcCCChh
Q 017204 231 ---IVKLVDTFPGQ 241 (375)
Q Consensus 231 ---la~lt~gf~ga 241 (375)
+|+++...+|.
T Consensus 961 IELIArkVAq~SGD 974 (1164)
T PTZ00112 961 IQLCARKVANVSGD 974 (1164)
T ss_pred HHHHHHhhhhcCCH
Confidence 44444455443
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=6.8e-12 Score=136.61 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc--------------------------eEEeccCccccCCCCChHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESGNAGEPAKLIR 108 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~--------------------------~i~vs~s~l~s~~~Ge~~~~ir 108 (375)
.-+.+..+||+||+|||||++|+.+|+.+.+. ++.+++.. -.....||
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR 106 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS------HGGVDDAR 106 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc------cCCHHHHH
Confidence 34677889999999999999999999999752 11222111 01234556
Q ss_pred HHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 109 ~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
++-+++.-.-......|+||||+|.+... ..+.|+++++ +....+++|++|+.+
T Consensus 107 ~l~~~~~~~p~~~~~KV~IIDEad~lt~~-------------a~NaLLK~LE-------------EpP~~~~fIl~tt~~ 160 (824)
T PRK07764 107 ELRERAFFAPAESRYKIFIIDEAHMVTPQ-------------GFNALLKIVE-------------EPPEHLKFIFATTEP 160 (824)
T ss_pred HHHHHHHhchhcCCceEEEEechhhcCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEeCCh
Confidence 65444411112456779999999987431 2345666666 444567888888888
Q ss_pred CCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 189 STLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 189 ~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
+.|.+.|+. |+..+-+ .++.++..++++.++...++.
T Consensus 161 ~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 161 DKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred hhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 889888875 6655555 678888888888877665553
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3.5e-12 Score=132.68 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCchhHHHHHHHH----HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc----------------------
Q 017204 33 YIAPAFMDKLVVH----ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------- 86 (375)
Q Consensus 33 ~i~~~~~d~~~~~----~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~---------------------- 86 (375)
|-|..|.|.+... .+++.+. ..+.|..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~--~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALD--QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRF 87 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHH--hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCC
Confidence 3455555544332 3344443 33567889999999999999999999998763
Q ss_pred --eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 017204 87 --PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164 (375)
Q Consensus 87 --~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 164 (375)
++.++++. ......+|.+...+.-.-..++..|+||||+|.+... . .+.|+..++
T Consensus 88 ~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------a-~naLLk~LE---- 144 (509)
T PRK14958 88 PDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------S-FNALLKTLE---- 144 (509)
T ss_pred ceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH------------H-HHHHHHHHh----
Confidence 23333221 1233456666665411111345579999999977432 1 234555555
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 165 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 165 v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
+....+.+|++|++++.+.+.++. |+..+-. .++.++....++.++...++.
T Consensus 145 ---------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 145 ---------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred ---------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 344567888888999999999875 6654444 566777777666666655543
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.36 E-value=5.1e-12 Score=123.73 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=92.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccCC-------------CCC-------hHHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 115 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~~-------------~Ge-------~~~~ir~~F~~A~ 115 (375)
.+||+||||||||++|+++++++.. +++.++++++...+ .+. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 5899999999999999999999743 45677776553221 111 1122333332221
Q ss_pred HHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 017204 116 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194 (375)
Q Consensus 116 ~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 194 (375)
.... ...+.+|+|||+|.+... ..+.|..+++ .......+|++|+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 1111 234569999999876321 1123444444 112234566677777778888
Q ss_pred hcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHHHHhcCCChhhH
Q 017204 195 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 243 (375)
Q Consensus 195 LlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la~lt~gf~gadl 243 (375)
|.. |+..+.. +|+.++..++++.++...+ ++.+.+..++... +.++
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdl 220 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDL 220 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 875 5544433 7899999999988876654 4555566666554 3344
No 98
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.2e-11 Score=128.61 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=101.0
Q ss_pred CCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-----------------------e
Q 017204 33 YIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------P 87 (375)
Q Consensus 33 ~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-----------------------~ 87 (375)
|-|..|.|.+..+.++..+. ...-+.|..+|||||||||||++|+++|+.+.+. +
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 44555555444443333321 1133567789999999999999999999998641 2
Q ss_pred EEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccC
Q 017204 88 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167 (375)
Q Consensus 88 i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l 167 (375)
+.++++. ..+...+|++...+...--...+.||||||+|.+.. .. ...|+..++
T Consensus 88 ~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------~a-~naLLk~LE------- 141 (504)
T PRK14963 88 LEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------SA-FNALLKTLE------- 141 (504)
T ss_pred EEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH------------HH-HHHHHHHHH-------
Confidence 3333321 123455677655542211245678999999985421 11 223444444
Q ss_pred CCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 168 ~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
.....+.+|++||.+..+.+++.. |+.++-. .|+.++....++.++...++.
T Consensus 142 ------ep~~~t~~Il~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 142 ------EPPEHVIFILATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred ------hCCCCEEEEEEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 334567788888999999999886 6665444 788999888888877665553
No 99
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.34 E-value=2.5e-13 Score=116.81 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=73.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc------CCC---CChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------GNA---GEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s------~~~---Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.|||+||||||||++|+.+|+.++.+++.++.+.... .|. |.. ......+-+| ...++|++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~-~~~~~~l~~a-----~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF-EFKDGPLVRA-----MRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT-CEEE-CCCTT-----HHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc-cccccccccc-----ccceeEEEECCc
Confidence 4899999999999999999999999998877665321 111 000 0000011111 126899999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC------CceEEEEeCCCC----CCChhhcCCCcc
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 201 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~------~V~VI~TTN~~~----~Ld~ALlR~gRf 201 (375)
+... ..+.+.|+.++++-......+........ +..||+|+|..+ .|++||+| ||
T Consensus 75 n~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 8542 23445666777754433222221111112 489999999999 99999998 65
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.6e-11 Score=128.17 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=91.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.+.|..+||+||||||||++|+++|+.+.+. ++.+++. ... +...++.+.
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa----s~~--gvd~ir~ii 108 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA----SRT--GVEETKEIL 108 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc----ccc--CHHHHHHHH
Confidence 3677889999999999999999999998752 1222211 111 233456666
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+...-..+...|+||||+|.+... ....|+..+. +....+.+|++|+++..+
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LE-------------epp~~v~fIL~Ttd~~ki 162 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLE-------------EPPEYVKFILATTDYHKI 162 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHh-------------cCCCCceEEEEECChhhh
Confidence 66532223456779999999876321 2235555555 334567788888889999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
.+.++. |+..+-. .++.++....++.++...++.
T Consensus 163 l~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 163 PVTILS--RCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred hhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 988765 6755555 678888877777776655443
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.1e-11 Score=127.81 Aligned_cols=169 Identities=14% Similarity=0.253 Sum_probs=108.2
Q ss_pred CCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------c
Q 017204 33 YIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------N 86 (375)
Q Consensus 33 ~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~------------------------~ 86 (375)
|-|..|.|.+....+...+. ...-+.|..+||+||||+|||++|+.+|+.+++ .
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 45556655554443333332 123467889999999999999999999998643 2
Q ss_pred eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcccc
Q 017204 87 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ 166 (375)
Q Consensus 87 ~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~ 166 (375)
++.++++. ..+...||.+.+.+...--.+...|+||||+|.+... ....|+..++
T Consensus 87 v~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-------------A~NaLLK~LE------ 141 (491)
T PRK14964 87 VIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-------------AFNALLKTLE------ 141 (491)
T ss_pred EEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH-------------HHHHHHHHHh------
Confidence 33344331 1234567777776621111456679999999866321 1234555555
Q ss_pred CCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCC--CHHHHHHHh
Q 017204 167 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLV 235 (375)
Q Consensus 167 l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v--~~~~la~lt 235 (375)
++.+.+.+|++|+.++.|.+.++. |+..+-. .++.++..+.++.++...++ +.+.+..++
T Consensus 142 -------ePp~~v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa 204 (491)
T PRK14964 142 -------EPAPHVKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA 204 (491)
T ss_pred -------CCCCCeEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344567888888999999999876 6655555 67888888888887766544 444443333
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.1e-11 Score=130.42 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=94.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.+.+..+|||||+|||||++|+.+|+.+.+. ++.++++ .+.+...||++.
T Consensus 35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~ 108 (559)
T PRK05563 35 GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIR 108 (559)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHH
Confidence 4578899999999999999999999997642 2333322 123456778887
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+...-......|+||||+|.+... . ...|+..++ ++...+++|++|+.++.|
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~Lt~~------------a-~naLLKtLE-------------epp~~~ifIlatt~~~ki 162 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHMLSTG------------A-FNALLKTLE-------------EPPAHVIFILATTEPHKI 162 (559)
T ss_pred HHHhhCcccCCeEEEEEECcccCCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChhhC
Confidence 77621111455679999999876321 1 224444555 344567778788889999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 226 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v 226 (375)
++.+++ |+.++-+ .|+.++...+++.++...++
T Consensus 163 ~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 163 PATILS--RCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 999875 6665555 78888888888887766554
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.31 E-value=4.3e-12 Score=121.74 Aligned_cols=180 Identities=17% Similarity=0.228 Sum_probs=107.7
Q ss_pred cccCCchhHHHHHHHHH----HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------eEEeccCccccCC
Q 017204 30 DGLYIAPAFMDKLVVHI----TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGN 99 (375)
Q Consensus 30 ~~~~i~~~~~d~~~~~~----~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------~i~vs~s~l~s~~ 99 (375)
-.-|-|+.|.|.+.... ++|-+.. +.--.+|||||||||||+.|+++|.++..+ +...+++.-....
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis 103 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS 103 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc
Confidence 34567888877555444 4444433 222368999999999999999999998762 1222333322222
Q ss_pred CCChHHHHHHHHHHHHHHHH-----hCCc-eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc
Q 017204 100 AGEPAKLIRQRYREAADIIK-----KGKM-CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173 (375)
Q Consensus 100 ~Ge~~~~ir~~F~~A~~~~~-----~~~p-~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~ 173 (375)
++. ++. .-|.+...... .+.| -|++|||.|++... .+.+|...++
T Consensus 104 vvr-~Ki--k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE------------- 154 (346)
T KOG0989|consen 104 VVR-EKI--KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME------------- 154 (346)
T ss_pred chh-hhh--cCHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------
Confidence 111 111 22333211111 1122 59999999987543 2356666666
Q ss_pred CCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCC-CHHHHHHhhhhhcCCCCCCHHH-HHHHhcCCChhhH
Q 017204 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-TREDRIGVCKGIFRNDNVADDD-IVKLVDTFPGQSI 243 (375)
Q Consensus 174 ~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P-~~~~R~~Il~~~l~~~~v~~~~-la~lt~gf~gadl 243 (375)
.....+.+|..||..+.|+.++.. |+.++.+.| ..+.....++.+..+++++.++ .-+.....++.|+
T Consensus 155 ~~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 155 DFSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred ccccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 334567899999999999999986 999988844 3344556666777777666543 2222233444454
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.31 E-value=2.4e-11 Score=120.04 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=96.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.+.|..+|||||||+|||++|+++|+.+... ++.+++. .......++.++
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ 106 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREIL 106 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHH
Confidence 3567889999999999999999999997543 2222221 112344577777
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+...-......|++|||+|.+... .. ..|+..++ .....+++|++||+++.+
T Consensus 107 ~~~~~~p~~~~~~vviidea~~l~~~------------~~-~~Ll~~le-------------~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 107 DNVKYAPSSGKYKVYIIDEVHMLSKS------------AF-NALLKTLE-------------EPPEHVVFILATTEPHKI 160 (355)
T ss_pred HHHhcCcccCCceEEEEeChhhcCHH------------HH-HHHHHHHh-------------CCccceeEEEEeCCHHHH
Confidence 77621111344569999999876321 11 23334444 233557788888999988
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHHHHhcC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDT 237 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la~lt~g 237 (375)
.+++++ |+..+-. .|+.++..++++.++...+ ++.+.+..+++.
T Consensus 161 ~~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 161 PATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888876 6655444 7889999999888776654 555554444433
No 105
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=4.8e-12 Score=124.02 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC--CCCChHH----------HHHHHHHHHHHHHHhCCcee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAK----------LIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~--~~Ge~~~----------~ir~~F~~A~~~~~~~~p~I 125 (375)
..+.|||.||||||||++++++|+.++++++.++.....+. .+|...- .....+-.| ...+++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~i 137 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVA 137 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeE
Confidence 45679999999999999999999999999999887766554 4554221 112233344 346789
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCC------------CCC
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------------TLY 192 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~------------~Ld 192 (375)
|++||+|..-++ ++..|..+|+....+.+++.... ...+...||+|+|... .++
T Consensus 138 lllDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 138 LCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred EEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 999999975322 22445555564323333332122 2345678999999854 467
Q ss_pred hhhcCCCcceEEEe--CCCHHHHHHhhhhhc
Q 017204 193 APLIRDGRMEKFYW--APTREDRIGVCKGIF 221 (375)
Q Consensus 193 ~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l 221 (375)
+|++- ||-..+. .|+.++-.+|+....
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 88885 8876654 788888888886654
No 106
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.1e-11 Score=102.49 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=78.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
....++++||||||||++++.+++.+ +.+++.++..+....+......... .+...........+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 55689999999999999999999998 8888888887665433222111100 0011111124667899999999876
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCCCcceEEEeCC
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 208 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~gRfd~~i~~P 208 (375)
... ....++.++. ..... .....++.+|++||... .+++.+.. ||+..+.+|
T Consensus 97 ~~~-------------~~~~~~~~i~-----~~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SRG-------------AQNALLRVLE-----TLNDL--RIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hHH-------------HHHHHHHHHH-----hcCce--eccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 111 1112222222 00000 01246789999999887 67777764 887666543
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=1.9e-11 Score=110.68 Aligned_cols=140 Identities=10% Similarity=0.087 Sum_probs=90.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F~ 112 (375)
+.|..+|||||||+|||++|+++++.+... +..+... ... -+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 577889999999999999999999997542 1111111 001 12345666666
Q ss_pred HHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 017204 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 192 (375)
.+...-......|++|||+|.+.... ...|+..++ .......+|++||.+..|.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~~-------------~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEAA-------------ANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHHH-------------HHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 65221124567799999998764321 223445555 3334567888888889999
Q ss_pred hhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHHHHH
Q 017204 193 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIVK 233 (375)
Q Consensus 193 ~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~la~ 233 (375)
+++.+ |+..+-. .|+.++..++++.. +++.+.+..
T Consensus 141 ~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~ 176 (188)
T TIGR00678 141 PTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAEL 176 (188)
T ss_pred HHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHH
Confidence 99987 5544333 78999998888776 355554433
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=2e-11 Score=121.88 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=94.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc-------CccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA-------GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 129 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~-------s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iD 129 (375)
+.|..+|||||||+|||++|+++|+.+......... -++ +.........++.++..+...-....+.||+||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 567899999999999999999999998652211100 001 111112345677777766211113456799999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CC
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 208 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P 208 (375)
|+|.+... . ...|+..++ ......++|++||....+.+++.+ |+..+-. .|
T Consensus 116 E~~~l~~~------------~-~~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~s--r~~~v~~~~~ 167 (367)
T PRK14970 116 EVHMLSSA------------A-FNAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILS--RCQIFDFKRI 167 (367)
T ss_pred ChhhcCHH------------H-HHHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHh--cceeEecCCc
Confidence 99866321 1 233444444 223345677778888899999886 4433323 68
Q ss_pred CHHHHHHhhhhhcCCCC--CCHHHHHHHhcC
Q 017204 209 TREDRIGVCKGIFRNDN--VADDDIVKLVDT 237 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~~--v~~~~la~lt~g 237 (375)
+.++...++.......+ ++.+.+..++..
T Consensus 168 ~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~ 198 (367)
T PRK14970 168 TIKDIKEHLAGIAVKEGIKFEDDALHIIAQK 198 (367)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 88888888877776655 455555555543
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=3.1e-11 Score=113.64 Aligned_cols=175 Identities=13% Similarity=0.190 Sum_probs=101.3
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 98 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~ 98 (375)
.|+|+|++.+. ...+...++++....+-.....++||||+|||||+|++++++++ +...+.++..++...
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 45667766432 23455556655432222234679999999999999999999764 567777887766532
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
. ..+.+.. +. ..+|+|||++.+.++.. . ++.|..+++ .. ...++
T Consensus 88 ~--------~~~~~~~----~~--~d~LiiDDi~~~~~~~~--~---------~~~Lf~l~n--------~~---~~~g~ 131 (234)
T PRK05642 88 G--------PELLDNL----EQ--YELVCLDDLDVIAGKAD--W---------EEALFHLFN--------RL---RDSGR 131 (234)
T ss_pred h--------HHHHHhh----hh--CCEEEEechhhhcCChH--H---------HHHHHHHHH--------HH---HhcCC
Confidence 1 1122211 22 25899999998765432 1 122333333 11 11233
Q ss_pred ceEEEEeCCCCCC---ChhhcCCCcce--EEE--eCCCHHHHHHhhhhhcCC--CCCCHHHHHHHhcCCChh
Q 017204 179 VPIIVTGNDFSTL---YAPLIRDGRME--KFY--WAPTREDRIGVCKGIFRN--DNVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 179 V~VI~TTN~~~~L---d~ALlR~gRfd--~~i--~~P~~~~R~~Il~~~l~~--~~v~~~~la~lt~gf~ga 241 (375)
.+||.++..|..+ .|.|.. ||. ..+ ..|+.++|.+|++..... ..++.+.+.-++..+.+.
T Consensus 132 ~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 132 RLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred EEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 4444444445443 566765 662 333 378999999998844433 356666666666665543
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.9e-11 Score=128.81 Aligned_cols=141 Identities=9% Similarity=0.155 Sum_probs=91.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F~ 112 (375)
+.+..+||+||||||||++|+++|+.+.+. ++.+++.. ......+|.+.+
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~ 109 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKE 109 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHH
Confidence 556789999999999999999999998763 22232210 112234454433
Q ss_pred HHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 017204 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 192 (375)
.+...-..+...||||||+|.+... ....|+..++ +...++++|++||.+..|.
T Consensus 110 ~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~LE-------------EP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 110 AIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKTLE-------------EPPARVTFVLATTEPHKFP 163 (624)
T ss_pred HHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHHhh-------------ccCCCEEEEEecCChhhhh
Confidence 3311112456679999999977421 1234444554 3345678889999999998
Q ss_pred hhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHH
Q 017204 193 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 231 (375)
Q Consensus 193 ~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~l 231 (375)
+.|+. |+..+-+ .++.++...+++.++...+ ++.+.+
T Consensus 164 ~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 164 VTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred HHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88875 6654444 6788888888887776554 455443
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2e-11 Score=128.17 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=95.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQR 110 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 110 (375)
..+.|.++||+||||+|||++|+++|+.+.+. ++.++++. .-....||.+
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReI 107 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNI 107 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHH
Confidence 34678899999999999999999999997541 12222211 1123456777
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
...+...--.+...|++|||+|.+... ....|+..++ ++...+++|++|+.+..
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHh
Confidence 766521111334569999999976321 1235555555 44456788888899999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHHH
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVK 233 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la~ 233 (375)
|.+++++ |+..+-. .|+.++...+++..+...+ ++.+.+..
T Consensus 162 Ll~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~ 205 (605)
T PRK05896 162 IPLTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDK 205 (605)
T ss_pred hhHHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999886 6655444 6888888888887766554 55554333
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.2e-11 Score=126.09 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=94.6
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc--------------------------eEEeccCccccCCC
Q 017204 47 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESGNA 100 (375)
Q Consensus 47 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~--------------------------~i~vs~s~l~s~~~ 100 (375)
+++++. ..+.|..+||+||+|||||++|+++|+.+.+. ++.++++.
T Consensus 25 L~~~i~--~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas------ 96 (584)
T PRK14952 25 LSSALD--AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS------ 96 (584)
T ss_pred HHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccc------
Confidence 444443 33678889999999999999999999998752 11122110
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
..+...+|++-..+...-......|+||||+|.+... ..+.|+..+. +....++
T Consensus 97 ~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK~LE-------------Epp~~~~ 150 (584)
T PRK14952 97 HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLKIVE-------------EPPEHLI 150 (584)
T ss_pred ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHHHHh-------------cCCCCeE
Confidence 1124556666555421112455679999999876321 2234555555 4456788
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCC
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 226 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v 226 (375)
+|++|+.++.|.++|+. |+.++-+ .++.++..+.++.++...++
T Consensus 151 fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 151 FIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred EEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 88888999999999875 5555444 67788888787777766553
No 113
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.28 E-value=2.3e-11 Score=112.56 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=94.7
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH
Q 017204 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119 (375)
Q Consensus 43 ~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~ 119 (375)
....+++++. ...+..++|+||||||||++|+++++++ +.+++.++++++.+.. ...+..
T Consensus 25 ~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~------ 87 (226)
T TIGR03420 25 LLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG------ 87 (226)
T ss_pred HHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh------
Confidence 3444455442 3457789999999999999999999886 4678888887665321 122222
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCCC---hhh
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APL 195 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~Ld---~AL 195 (375)
...+.+|+|||+|.+..... . ...|..+++ .. ..... .+|+|||. +..++ +.|
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~--~---------~~~L~~~l~--------~~---~~~~~-~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPE--W---------QEALFHLYN--------RV---REAGG-RLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred cccCCEEEEeChhhhcCChH--H---------HHHHHHHHH--------HH---HHcCC-eEEEECCCChHHCCcccHHH
Confidence 12346999999998754321 0 112222222 00 01112 45566663 43332 566
Q ss_pred cCCCcceEEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChhh
Q 017204 196 IRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQS 242 (375)
Q Consensus 196 lR~gRfd~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~gad 242 (375)
.++..+...+. .|+.+++..+++.+.... .++.+.+..+...++|.-
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~ 195 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDM 195 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCH
Confidence 64222234555 678889999988765433 566777777777655543
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.7e-11 Score=128.13 Aligned_cols=145 Identities=12% Similarity=0.201 Sum_probs=91.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe--cc-----------C---ccc--cCCCCChHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--SA-----------G---ELE--SGNAGEPAKLIRQRYREAAD 116 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v--s~-----------s---~l~--s~~~Ge~~~~ir~~F~~A~~ 116 (375)
.-+.+..+||+||||||||++|+++|+.+++..-.. .+ + ++. +.........+|.+...+..
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~ 113 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQY 113 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhh
Confidence 346788899999999999999999999987631100 00 0 000 00001234567777776611
Q ss_pred HHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 017204 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 196 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 196 (375)
.-..+...|+||||+|.+... . ...|+..++ +....+.+|++|++++.+.+.++
T Consensus 114 ~p~~~~~kVvIIDEad~ls~~------------a-~naLLK~LE-------------epp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSKS------------A-FNAMLKTLE-------------EPPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred CcccCCceEEEEcCcccCCHH------------H-HHHHHHHHh-------------CCCCCEEEEEEeCChhhCchhHH
Confidence 111345679999999876421 1 123444455 34466788888899999988876
Q ss_pred CCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 197 RDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 197 R~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
. |+..+-. .|+.++-.+.++.++...++.
T Consensus 168 S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 168 S--RCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred H--HHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4 6655444 678888877777777655443
No 115
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.28 E-value=4.9e-11 Score=112.33 Aligned_cols=158 Identities=13% Similarity=0.174 Sum_probs=90.1
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHHHHHHH
Q 017204 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119 (375)
Q Consensus 43 ~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~ 119 (375)
....++.+.... .+..++||||||||||+|++++++++. .....++.....+ ...++.+.. .
T Consensus 32 a~~~l~~~~~~~---~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~----~ 96 (235)
T PRK08084 32 LLAALQNALRQE---HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM----E 96 (235)
T ss_pred HHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh----h
Confidence 444555544322 234799999999999999999998864 3344444433211 111111111 2
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCC---CChhh
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFST---LYAPL 195 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~~~~---Ld~AL 195 (375)
. -.+|+|||++.+.++.. .+ ..+..++....+ .+++.+|+||+ .|.. +.|.|
T Consensus 97 ~--~dlliiDdi~~~~~~~~--~~-----~~lf~l~n~~~e---------------~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 97 Q--LSLVCIDNIECIAGDEL--WE-----MAIFDLYNRILE---------------SGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred h--CCEEEEeChhhhcCCHH--HH-----HHHHHHHHHHHH---------------cCCCeEEEeCCCChHHcCcccHHH
Confidence 2 25899999998765421 11 222222221111 23334555554 4444 57888
Q ss_pred cCCCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 196 IRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 196 lR~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
.. |+. ..+. .|+.++|.+|++...... .++.+.+.-++..+.+.
T Consensus 153 ~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 153 AS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 75 763 3333 789999999988755443 56666666666666553
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2e-11 Score=129.16 Aligned_cols=147 Identities=12% Similarity=0.182 Sum_probs=95.3
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-----------------------------eEEeccCcc
Q 017204 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGEL 95 (375)
Q Consensus 45 ~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-----------------------------~i~vs~s~l 95 (375)
..+++++. ..+.|..+|||||+|||||++|+++|+.+++. ++.++++
T Consensus 26 ~~L~~~l~--~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-- 101 (618)
T PRK14951 26 QALTNALT--QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-- 101 (618)
T ss_pred HHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc--
Confidence 34455554 33678889999999999999999999998762 1112111
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
...+...||++.+.+.-.-..+.-.|+||||+|.+...- .+.|+..++ +.
T Consensus 102 ----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a-------------~NaLLKtLE-------------EP 151 (618)
T PRK14951 102 ----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA-------------FNAMLKTLE-------------EP 151 (618)
T ss_pred ----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH-------------HHHHHHhcc-------------cC
Confidence 011234567766655111113345699999999764321 123444444 44
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
...+.+|++|++++.+.+.++. |+..+-. .++.++..+.++.++...++.
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 5667788888899999988775 6655555 677888888888777666554
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.27 E-value=4.1e-11 Score=111.60 Aligned_cols=168 Identities=17% Similarity=0.238 Sum_probs=97.3
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcccc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 97 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s 97 (375)
+.++|++++.+. .......++++.. +...+..++|+||||||||+||+++++++ +..++.+++..+..
T Consensus 13 ~~~~~d~f~~~~-------~~~~~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 13 PPPTFDNFVAGE-------NAELVARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred ChhhhcccccCC-------cHHHHHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 446667765322 1123344555443 34556789999999999999999999985 56777777765431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
.+. ......+|+|||+|.+.... +..|..+++ .. ....
T Consensus 84 ------------~~~------~~~~~~~liiDdi~~l~~~~-------------~~~L~~~~~--------~~---~~~~ 121 (227)
T PRK08903 84 ------------AFD------FDPEAELYAVDDVERLDDAQ-------------QIALFNLFN--------RV---RAHG 121 (227)
T ss_pred ------------HHh------hcccCCEEEEeChhhcCchH-------------HHHHHHHHH--------HH---HHcC
Confidence 111 12346799999999763221 122333332 11 1123
Q ss_pred CceEEEEeCCCC---CCChhhcCCCcc--eEEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 178 RVPIIVTGNDFS---TLYAPLIRDGRM--EKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 178 ~V~VI~TTN~~~---~Ld~ALlR~gRf--d~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
..++|.|++.+. .+.+.|.. || ...+. +|+.+++..+++.+.... .++.+.+..+...+.|.
T Consensus 122 ~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn 192 (227)
T PRK08903 122 QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRD 192 (227)
T ss_pred CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 334555555432 24455553 44 23444 677777888887765443 55666677777755544
No 118
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.26 E-value=3.8e-11 Score=99.67 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCc---eEEeccCccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~---~i~vs~s~l~s~--------------~~Ge~~~~ir~~F~~A~~~~~~~ 121 (375)
+..++|+||||||||++++.+|..+... ++.++.+..... ........++..+..| +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4679999999999999999999999875 777777654332 2234455666677766 766
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
.+.||||||++.+....... ...... . . ..........+..+|+++|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~~~--------~~~~~~-~-~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEA--------LLLLLE-E-L--------RLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHHHH--------HHHhhh-h-h--------HHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 68999999999876553200 000000 0 0 0000112345678999999744444444443 77
Q ss_pred eEEEe
Q 017204 202 EKFYW 206 (375)
Q Consensus 202 d~~i~ 206 (375)
+..+.
T Consensus 139 ~~~~~ 143 (148)
T smart00382 139 DRRIV 143 (148)
T ss_pred ceEEE
Confidence 76665
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.3e-11 Score=128.41 Aligned_cols=138 Identities=12% Similarity=0.202 Sum_probs=92.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.+.|..+|||||+|+|||++|+++|+.+.+. ++.+++. .......||++.
T Consensus 35 ~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~------s~~~v~~ir~l~ 108 (576)
T PRK14965 35 GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA------SNTGVDDIRELR 108 (576)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc------CccCHHHHHHHH
Confidence 3678899999999999999999999998653 1222211 112345677777
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+.-.-......|+||||+|.+... ....|+..++ +..+.+++|++||.++.|
T Consensus 109 ~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~LE-------------epp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 109 ENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTLE-------------EPPPHVKFIFATTEPHKV 162 (576)
T ss_pred HHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHHH-------------cCCCCeEEEEEeCChhhh
Confidence 66511111344569999999876431 1235555655 445678888999999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
.+.|+. |+..+-+ .++.++....++.++...++.
T Consensus 163 ~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 163 PITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred hHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 999875 5554444 677777777777766655543
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=5.6e-11 Score=126.25 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=93.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE----eccC--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 116 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~----vs~s--------------~l--~s~~~Ge~~~~ir~~F~~A~~ 116 (375)
+.+..+|||||||+|||++|+++|+.+++.... ..++ ++ .+...+.....||++...+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 455689999999999999999999998763110 0000 01 111123345678888877621
Q ss_pred HHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 017204 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 196 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 196 (375)
.-..+...|+||||+|.+... ....|+..++ +....+++|++|++++.|.+.|+
T Consensus 116 ~p~~~~~KViIIDEad~Lt~~-------------a~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLSTA-------------AFNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCHH-------------HHHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 111345679999999876321 1234455555 44456788888889999999987
Q ss_pred CCCcceEEEe-CCCHHHHHHhhhhhcCCC--CCCHHHH
Q 017204 197 RDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDDI 231 (375)
Q Consensus 197 R~gRfd~~i~-~P~~~~R~~Il~~~l~~~--~v~~~~l 231 (375)
. |+..+-+ .++.++....++.+.... .++.+.+
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al 205 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEAL 205 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 5 6666555 667777666666555544 3444443
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.7e-11 Score=127.55 Aligned_cols=167 Identities=12% Similarity=0.201 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe---cc----------Cccc-
Q 017204 33 YIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA----------GELE- 96 (375)
Q Consensus 33 ~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v---s~----------s~l~- 96 (375)
|-|..|.+.+....+...+. ...-+.+..+|||||||+|||++|+++|+.+.+.--.. .+ ..+.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 44555555444333332221 12336788999999999999999999999986631100 00 0000
Q ss_pred -cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 97 -SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 97 -s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
+.....+...||.+.+.+...-..+...|++|||+|.+... ....|+..++ ++
T Consensus 92 idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EP 145 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EP 145 (725)
T ss_pred EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cC
Confidence 00001224557887776622222456679999999876421 1334555555 44
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
...+++|++|+.++.|++.++. |+.++-. .|+.++..++++.++...++.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5567888888999999999876 6665444 788888888887776655444
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.5e-11 Score=122.81 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=93.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-------------------------eEEeccCccccCCCCChHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQR 110 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 110 (375)
-+.|..+|||||||+|||++|+++|+.+.+. ++.+.+.. . .+...++.+
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~----~--~gid~ir~i 109 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS----H--RGIEDIRQI 109 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc----c--CCHHHHHHH
Confidence 3578889999999999999999999997542 11222110 1 112345544
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
-+...-.-......|+||||+|.+... ....|+..++ +..+.+.+|++||.+..
T Consensus 110 ~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lE-------------ep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 110 NETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLE-------------EPPQHVKFFLATTEIHK 163 (451)
T ss_pred HHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhh-------------cCCCCceEEEEeCChHh
Confidence 433311112466789999999876421 1234555555 33456788888899999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHHHH
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 234 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la~l 234 (375)
|.++|+. |+..+.. .++.++...+++..+...+ ++.+.+..+
T Consensus 164 l~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 164 IPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred cchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999886 6665555 6888888888777766554 444443333
No 123
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.7e-11 Score=116.76 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=79.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc-ccCCCCChHHHHH-HHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIR-QRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l-~s~~~Ge~~~~ir-~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
..|||.||.|||||+||+.+|+.++++|-.-++..| ..+|+|+...+|- .+...|.--+.+....||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 369999999999999999999999999999999988 5689999766543 44443321123556789999999999877
Q ss_pred CCC-CcccchhhHHHHHHHHHhhcC
Q 017204 138 MGG-TTQYTVNNQMVNATLMNIADN 161 (375)
Q Consensus 138 r~~-~~~~~~~~~~v~~~L~~lld~ 161 (375)
... +-...|...-|+|.|+.++..
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 641 122456677899999999984
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.24 E-value=2.3e-11 Score=123.60 Aligned_cols=163 Identities=16% Similarity=0.187 Sum_probs=87.9
Q ss_pred ccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-------eEEec----
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMS---- 91 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-------~i~vs---- 91 (375)
|++.+...+.+++....+.++... ...+.++|+||||||||++|+++|..+... .+.++
T Consensus 168 y~~~~~l~d~~i~e~~le~l~~~L----------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 168 YCLEDALNDLFIPETTIETILKRL----------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhHHHHhhcccCCHHHHHHHHHHH----------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 444444555666665555443222 235679999999999999999999997532 12222
Q ss_pred cCccccCCC--CChHHHHHHHHHHHHHHHHh--CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc----
Q 017204 92 AGELESGNA--GEPAKLIRQRYREAADIIKK--GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---- 163 (375)
Q Consensus 92 ~s~l~s~~~--Ge~~~~ir~~F~~A~~~~~~--~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~---- 163 (375)
..++..++. +..-.....+|.++...++. ..|+||||||||.....+ +...++.++++..
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~ 305 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGEN 305 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccc
Confidence 112222221 11111122344333222242 468999999998654322 0111222233110
Q ss_pred -cccC--CCcc--ccCCCCCceEEEEeCCCC----CCChhhcCCCcceEEEeCCC
Q 017204 164 -CVQL--PGMY--NKEENPRVPIIVTGNDFS----TLYAPLIRDGRMEKFYWAPT 209 (375)
Q Consensus 164 -~v~l--~~~~--~~~~~~~V~VI~TTN~~~----~Ld~ALlR~gRfd~~i~~P~ 209 (375)
.+.+ +... .-....++.||+|+|..+ .+|.||+| ||..+-..|+
T Consensus 306 ~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~fi~i~p~ 358 (459)
T PRK11331 306 WSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSFIDIEPG 358 (459)
T ss_pred cceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhheEEecCC
Confidence 0000 0100 013347899999999988 89999999 6644333454
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1e-10 Score=121.09 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=92.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-eEE------------eccC---ccc--cCCCCChHHHHHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIM------------MSAG---ELE--SGNAGEPAKLIRQRYREAADI 117 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-~i~------------vs~s---~l~--s~~~Ge~~~~ir~~F~~A~~~ 117 (375)
.+.+..+|||||||+|||++|+.+|+.+++. ... +..+ ++. +.-.......+|.+...+...
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~ 114 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT 114 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC
Confidence 3567789999999999999999999998641 000 0000 010 000112234456655554111
Q ss_pred HHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 017204 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 197 (375)
Q Consensus 118 ~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 197 (375)
-..+...|++|||+|.+... . ...|+..+. ++.+.+++|.+|+.++.|++++++
T Consensus 115 P~~~~~KVvIIDEad~Lt~~------------a-~naLLk~LE-------------epp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTKE------------A-FNALLKTLE-------------EPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred cccCCeeEEEEEChhhcCHH------------H-HHHHHHHHh-------------cCCCCeEEEEEECCHHHHHHHHHH
Confidence 11456689999999966321 1 123444444 334456777777888889998876
Q ss_pred CCcceEEEe-CCCHHHHHHhhhhhcCCCCCCH--HHHHHHh
Q 017204 198 DGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLV 235 (375)
Q Consensus 198 ~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~--~~la~lt 235 (375)
|+.++.. .|+.++...+++.++...++.. +.+..++
T Consensus 169 --Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 169 --RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred --hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555444 7889999888888877665443 4444433
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.24 E-value=2.7e-11 Score=113.05 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=99.9
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCcc
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 95 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l 95 (375)
.+|+|+|.+-+.. .+.+.+.+++....++. .-..+.||||+|+|||+|.+++++++ +..++++++.++
T Consensus 3 ~~~tFdnfv~g~~------N~~a~~~~~~ia~~~~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGES------NELAYAAAKAIAENPGE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTT------THHHHHHHHHHHHSTTT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCc------HHHHHHHHHHHHhcCCC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 4677888654321 44555666666655554 23348999999999999999999884 566778887766
Q ss_pred ccCCCCChH-HHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 017204 96 ESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174 (375)
Q Consensus 96 ~s~~~Ge~~-~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~ 174 (375)
...+...-. ..+ .-|.. .-....+|+|||++.+.++. ..+..|..+++ .. .
T Consensus 76 ~~~~~~~~~~~~~-~~~~~-----~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n--------~~---~ 127 (219)
T PF00308_consen 76 IREFADALRDGEI-EEFKD-----RLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN--------RL---I 127 (219)
T ss_dssp HHHHHHHHHTTSH-HHHHH-----HHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH--------HH---H
T ss_pred HHHHHHHHHcccc-hhhhh-----hhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH--------HH---H
Confidence 532210000 000 01111 13456899999999886542 12334444444 11 1
Q ss_pred CCCCceEEEEeC-CCCC---CChhhcCCCcceE----EEeCCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCCh
Q 017204 175 ENPRVPIIVTGN-DFST---LYAPLIRDGRMEK----FYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 175 ~~~~V~VI~TTN-~~~~---Ld~ALlR~gRfd~----~i~~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~g 240 (375)
..+ ..+|+|++ .|.. +++.|.. ||.- .+..|+.+.|.+|++...... .++.+.+.-++..++.
T Consensus 128 ~~~-k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 128 ESG-KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HTT-SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred hhC-CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 122 35666664 4454 4555543 5442 333899999999998877654 4555556666665544
No 127
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.24 E-value=6.8e-11 Score=115.80 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=84.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCc---eEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeeeecccccccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAG 136 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~---~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~ 136 (375)
.++||||||||||+||+.|+....-+ |+.+++..- ..+-+|++|+.|..... ..+..|||||||-.+-.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 58899999999999999999997766 777777642 35679999999954443 56778999999964432
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCcceEEEe-CCCHHHH
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDR 213 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R 213 (375)
.. +.++ .-....+.|.+|++| |---.|..||+. ||-+++. .-+.+..
T Consensus 237 sQ-------------QD~f---------------LP~VE~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 237 SQ-------------QDTF---------------LPHVENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLPVNAV 286 (554)
T ss_pred hh-------------hhcc---------------cceeccCceEEEecccCCCccchhHHHHh--ccceeEeccCCHHHH
Confidence 21 1112 111445667788776 555678899997 6656666 4455555
Q ss_pred HHhhhh
Q 017204 214 IGVCKG 219 (375)
Q Consensus 214 ~~Il~~ 219 (375)
.-|+..
T Consensus 287 ~~iL~r 292 (554)
T KOG2028|consen 287 VTILMR 292 (554)
T ss_pred HHHHHH
Confidence 555543
No 128
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.23 E-value=1.2e-10 Score=121.99 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH----hCCceeeeeccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDA 133 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~----~~~p~IL~iDEiD~ 133 (375)
+.|.+||+||||-|||+||+.||+++|..++.|++|+-. +...++.....|...-. ..+|.||+|||||-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 348999999999999999999999999999999999644 34556666655532222 37899999999983
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhc--CCccccCCCccc---cC---CCCCceEEEEeCCCCCCChhhcCCCc-ceEE
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIAD--NPTCVQLPGMYN---KE---ENPRVPIIVTGNDFSTLYAPLIRDGR-MEKF 204 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld--~~~~v~l~~~~~---~~---~~~~V~VI~TTN~~~~Ld~ALlR~gR-fd~~ 204 (375)
.. .....+++.++. ++....-.+.-. .. ..-.-+|||.+|+.. .+-||+=| +-.+
T Consensus 399 a~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY---aPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 399 AP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY---APALRPLRPFAEI 462 (877)
T ss_pred Cc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc---chhhhhcccceEE
Confidence 21 111122223322 222111111100 00 112238999999854 44444444 3333
Q ss_pred Ee--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCCh
Q 017204 205 YW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 205 i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~g 240 (375)
++ .|......+-|+.++..+ .++...|..+++-+.+
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 44 455444455566666555 4455556666665443
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.23 E-value=1.1e-10 Score=108.50 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCC-CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~-p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
.|+|+|++.+.. .......++++...++..+ -..++||||||||||+|++++++..+..++ +....
T Consensus 12 ~~tfd~Fvvg~~------N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~----- 78 (214)
T PRK06620 12 KYHPDEFIVSSS------NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF----- 78 (214)
T ss_pred CCCchhhEeccc------HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----
Confidence 455566544331 2234455555543334333 167999999999999999999998875322 21100
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
....+ ....+|+||||+.+ + ...+..++..+ ...++.+
T Consensus 79 ------~~~~~---------~~~d~lliDdi~~~--------~----~~~lf~l~N~~---------------~e~g~~i 116 (214)
T PRK06620 79 ------NEEIL---------EKYNAFIIEDIENW--------Q----EPALLHIFNII---------------NEKQKYL 116 (214)
T ss_pred ------chhHH---------hcCCEEEEeccccc--------h----HHHHHHHHHHH---------------HhcCCEE
Confidence 01111 12378999999832 1 01222222111 1223456
Q ss_pred EEEEeCCCCC--CChhhcCCCcce----EEEeCCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCChh
Q 017204 181 IIVTGNDFST--LYAPLIRDGRME----KFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 241 (375)
Q Consensus 181 VI~TTN~~~~--Ld~ALlR~gRfd----~~i~~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ga 241 (375)
||+++..|.. + |+|+. |+. ..+..|+.+.+..+++.+.... .++.+.+.-++..+++.
T Consensus 117 lits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 117 LLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred EEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Confidence 6666655554 5 66664 776 3344899999999988777544 46666666666666553
No 130
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.23 E-value=6.3e-11 Score=127.64 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=94.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeeeecccccccCCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM 138 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r 138 (375)
..++||||||||||++|+++|+.++.+|+.+++... ..+.++..+..+.+.+. .....||||||+|.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 368999999999999999999999999988876521 22345666666533333 345679999999876322
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCcceEEEe-CCCHHHHHH
Q 017204 139 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 215 (375)
Q Consensus 139 ~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~ 215 (375)
.+..|+..+. ...+++|++| |....++++++. |+..+.. .++.+++..
T Consensus 125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~S--R~~v~~l~pLs~edi~~ 175 (725)
T PRK13341 125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVS--RSRLFRLKSLSDEDLHQ 175 (725)
T ss_pred ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhc--cccceecCCCCHHHHHH
Confidence 1233433333 2346666655 334568899986 4433333 688899999
Q ss_pred hhhhhcC-------CC--CCCHHHHHHHhcCCCh
Q 017204 216 VCKGIFR-------ND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 216 Il~~~l~-------~~--~v~~~~la~lt~gf~g 240 (375)
|++.++. .. .++.+.+..++...+|
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 9887765 22 4566666666655544
No 131
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=8.8e-11 Score=120.62 Aligned_cols=193 Identities=14% Similarity=0.159 Sum_probs=113.1
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccc
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 96 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~ 96 (375)
.|+|+|++.+. . ...+...++.+...++. ....++|||++|||||+|++++++++ +..++.+++.++.
T Consensus 111 ~~tFdnFv~g~----~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGS----S--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCC----c--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 56667755432 1 22344555666555553 34569999999999999999999965 4677888887776
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 97 s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
..+...-.... ..+....+ +-....+|+|||++.+.++.. ++ ..+..++..+.+
T Consensus 184 ~~~~~~l~~~~-~~~~~~~~--~~~~~dvLiIDDiq~l~~k~~--~~-----e~lf~l~N~~~~---------------- 237 (450)
T PRK14087 184 RKAVDILQKTH-KEIEQFKN--EICQNDVLIIDDVQFLSYKEK--TN-----EIFFTIFNNFIE---------------- 237 (450)
T ss_pred HHHHHHHHHhh-hHHHHHHH--HhccCCEEEEeccccccCCHH--HH-----HHHHHHHHHHHH----------------
Confidence 44322111000 11111100 134567999999998765432 11 122222211111
Q ss_pred CCceEEEEeCCC-C---CCChhhcCCCcce--EE--EeCCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHH
Q 017204 177 PRVPIIVTGNDF-S---TLYAPLIRDGRME--KF--YWAPTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 177 ~~V~VI~TTN~~-~---~Ld~ALlR~gRfd--~~--i~~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~ 244 (375)
.+-.||+|+|.+ . .+++.|.. ||. .. +..|+.++|.+|++..+... .++.+.+.-++..++|.--.
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHH
Confidence 112577787764 2 35666765 665 22 22799999999998887654 36677677777777665444
Q ss_pred HHHHH
Q 017204 245 FFGAL 249 (375)
Q Consensus 245 ~~~al 249 (375)
..+++
T Consensus 316 L~gaL 320 (450)
T PRK14087 316 IKGSV 320 (450)
T ss_pred HHHHH
Confidence 44444
No 132
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.21 E-value=5.7e-11 Score=124.40 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=92.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCcc-------ccCCCCChHHHH---HHHHHHH--
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA-- 114 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l-------~s~~~Ge~~~~i---r~~F~~A-- 114 (375)
+.|..+||+||||||||++|+++.+++ +.+|+.+++... .+...|.....+ ...|..+
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 346689999999999999999998753 357888887532 111111100000 0011100
Q ss_pred ----HHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC-Cccc----------------c
Q 017204 115 ----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYN----------------K 173 (375)
Q Consensus 115 ----~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~----------------~ 173 (375)
...+......+|||||+|.+... .+..|+..+++.. +.+. +.+. .
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRK-VFLDSAYYNSENPNIPSHIHDIFQNG 229 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCe-eeeccccccccCcccccchhhhcccC
Confidence 01123445689999999976432 2334444444211 1110 0000 0
Q ss_pred CCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHH
Q 017204 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIV 232 (375)
Q Consensus 174 ~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la 232 (375)
.+..-.+|++|||.++.|+|++++ ||..+.+ .++.+++.+|++..+...+ ++.+.+.
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~ 289 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE 289 (531)
T ss_pred cccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 111224566778899999999987 7776655 5678889999988876654 3444444
No 133
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.3e-11 Score=118.11 Aligned_cols=143 Identities=19% Similarity=0.257 Sum_probs=102.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeeeecccccccCCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 138 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r 138 (375)
.|||.||+|+|||+||+.+|+-++++|...++..|. .+|+|+. +..|.+++..|.--+.+.+..|+||||+|+|...-
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 689999999999999999999999999999999995 5799985 56788888877444457778899999999998544
Q ss_pred C-CCcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeC-------CCCCCChhhcCCCcceEEEe
Q 017204 139 G-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRMEKFYW 206 (375)
Q Consensus 139 ~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~-~~~~~~V~VI~TTN-------~~~~Ld~ALlR~gRfd~~i~ 206 (375)
. -.....|...-|+|.|+.++. -+.|.+++... .......+.|=||| -+..||.-+-| |++....
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred ccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhc
Confidence 3 222345677889999999998 34455433211 12222333444443 45567776666 6665444
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.6e-11 Score=120.22 Aligned_cols=148 Identities=15% Similarity=0.186 Sum_probs=88.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE----------eccC--------------ccccCCCC---ChHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAG--------------ELESGNAG---EPAKLI 107 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~----------vs~s--------------~l~s~~~G---e~~~~i 107 (375)
+.+.|..+|||||||||||++|+++|+++.+.-.. ..++ ++. .+-| .....|
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~I 112 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDI 112 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHH
Confidence 34678899999999999999999999999763100 0000 000 0111 123455
Q ss_pred HHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 017204 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 108 r~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 187 (375)
+++.+.+...--.....|+||||+|.+... . ...|+..+. +..+..++|++|++
T Consensus 113 r~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~-~~~LLk~LE-------------ep~~~t~~Il~t~~ 166 (397)
T PRK14955 113 RLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------A-FNAFLKTLE-------------EPPPHAIFIFATTE 166 (397)
T ss_pred HHHHHHHhhchhcCCeEEEEEeChhhCCHH------------H-HHHHHHHHh-------------cCCCCeEEEEEeCC
Confidence 555444411111344569999999876421 1 123444444 33445667777778
Q ss_pred CCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHH
Q 017204 188 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 231 (375)
Q Consensus 188 ~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~l 231 (375)
+..|.+++.+ |+..+-. .++.++-.+.++..+...+ ++.+.+
T Consensus 167 ~~kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 167 LHKIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred hHHhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8888888876 5543333 5778887777777665544 454443
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=1.2e-10 Score=128.00 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 017204 57 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 57 ~~p~g-lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------------~~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
..|.| +||+||||||||.+|+++|..+ ...++.++.+++..+ |+|..+. ..+.+ .+++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~---~v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTE---AVRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHH---HHHh
Confidence 34666 7999999999999999999998 446777887765322 4443221 11222 2356
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 187 (375)
...+||+|||||+..+ .+...|++++|+-... ++.-......+.+||+|||.
T Consensus 667 ~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~--d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVME--DGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCcEEEEechhhcCH-------------HHHHHHHHHhhcceee--cCCCcEEeccccEEEEeCCC
Confidence 7789999999986433 3446777788732211 11111234467899999995
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.9e-10 Score=121.72 Aligned_cols=144 Identities=11% Similarity=0.120 Sum_probs=93.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec-c--------------------CccccCC--CCChHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-A--------------------GELESGN--AGEPAKLIRQRY 111 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs-~--------------------s~l~s~~--~Ge~~~~ir~~F 111 (375)
..+.|..+||+||+|+|||++|+++|+.+.+.....+ + .++.... ..-+...||++.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 3467889999999999999999999999876432211 0 0110000 001245677777
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+...--.....|+||||+|.+... . ...|+..+. +....+.+|++|+.++.+
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~------------a-~naLLKtLE-------------ePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTA------------A-FNALLKTLE-------------EPPPHVKFIFATTEIRKV 175 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHH------------H-HHHHHHHHH-------------hCCCCeEEEEEeCChhhh
Confidence 66521112445679999999876321 1 234444455 344567788888888888
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 226 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v 226 (375)
.+.++. |+.++-. .|+.++...+++.++...++
T Consensus 176 l~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 176 PVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred hHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 888765 6665444 78888888888887766544
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=2.2e-10 Score=120.58 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=91.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
-+.|..+|||||||+|||++|+++|+.+.+. ++.+.+.. ......|+++.
T Consensus 35 ~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~ 108 (563)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIK 108 (563)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHH
Confidence 3577899999999999999999999998753 11111110 01234566666
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+...-..+...|++|||+|.+.. .. ...|+..++ ++...+.+|++|+.+..|
T Consensus 109 e~~~~~p~~~~~KVvIIDEa~~Ls~------------~a-~naLLK~LE-------------epp~~~vfI~~tte~~kL 162 (563)
T PRK06647 109 EEIMFPPASSRYRVYIIDEVHMLSN------------SA-FNALLKTIE-------------EPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HHHHhchhcCCCEEEEEEChhhcCH------------HH-HHHHHHhhc-------------cCCCCEEEEEecCChHHh
Confidence 5541111245667999999987632 11 234444444 345567888888889999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
.++|+. |+..+-+ .|+.++..++++.++...++.
T Consensus 163 ~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 163 PATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred HHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 999876 6665555 788888888887776555433
No 138
>PRK08116 hypothetical protein; Validated
Probab=99.17 E-value=1.8e-10 Score=110.70 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=81.9
Q ss_pred ccccccccccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCce
Q 017204 11 SSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINP 87 (375)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~ 87 (375)
.....+...++.++|+|+..... ....-..+..++++|... ...+.|++|||+||||||+||.+||+++ +.++
T Consensus 70 ~~~s~i~~~~~~~tFdnf~~~~~--~~~a~~~a~~y~~~~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v 145 (268)
T PRK08116 70 KSNSLLDEKFRNSTFENFLFDKG--SEKAYKIARKYVKKFEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPV 145 (268)
T ss_pred HHhcCCCHHHHhcchhcccCChH--HHHHHHHHHHHHHHHHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 34445677788888888653211 111122333344444321 2345689999999999999999999986 7788
Q ss_pred EEeccCccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcC
Q 017204 88 IMMSAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 161 (375)
Q Consensus 88 i~vs~s~l~s~~~Ge~~~~ir~~F~~-----A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~ 161 (375)
+.++.+++.+.+ +..|.. ..+.+. -....+|+|||+..... . ......|.++++
T Consensus 146 ~~~~~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~------t-----~~~~~~l~~iin- 205 (268)
T PRK08116 146 IFVNFPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD------T-----EWAREKVYNIID- 205 (268)
T ss_pred EEEEHHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEEecccCCCC------C-----HHHHHHHHHHHH-
Confidence 888887765322 222210 001111 23456999999953211 1 122334555555
Q ss_pred CccccCCCccccCCCCCceEEEEeCCC
Q 017204 162 PTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 162 ~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
.. ...+.++|+|||.+
T Consensus 206 -------~r----~~~~~~~IiTsN~~ 221 (268)
T PRK08116 206 -------SR----YRKGLPTIVTTNLS 221 (268)
T ss_pred -------HH----HHCCCCEEEECCCC
Confidence 11 12345799999975
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=5.3e-10 Score=118.61 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=91.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE----------eccC------------cc-ccCCCCC---hHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAG------------EL-ESGNAGE---PAKLIR 108 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~----------vs~s------------~l-~s~~~Ge---~~~~ir 108 (375)
+-+.|..+||+||||||||++|+++|+.+.+.--. -.++ .+ ...+-|. +...|+
T Consensus 34 ~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir 113 (620)
T PRK14954 34 MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIR 113 (620)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHH
Confidence 34788899999999999999999999999773100 0000 00 0001121 234566
Q ss_pred HHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 109 ~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
.+-+.+...--.+...|+||||+|.+... ....|+..++ +..+.+++|++|+.+
T Consensus 114 ~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK~LE-------------ePp~~tv~IL~t~~~ 167 (620)
T PRK14954 114 QLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLKTLE-------------EPPPHAIFIFATTEL 167 (620)
T ss_pred HHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEeCCh
Confidence 65544411111345679999999876421 1234555555 334456677777888
Q ss_pred CCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHH
Q 017204 189 STLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 231 (375)
Q Consensus 189 ~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~l 231 (375)
..|.+.|.. |+..+-. .++.++....++.++...+ ++.+.+
T Consensus 168 ~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal 211 (620)
T PRK14954 168 HKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADAL 211 (620)
T ss_pred hhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 899999886 5554444 6778887777777666544 555543
No 140
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.14 E-value=7.8e-10 Score=104.12 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=99.5
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-
Q 017204 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK- 119 (375)
Q Consensus 44 ~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~- 119 (375)
..+.+|........+...+||||++|||||++++++.++. |+.+|.+....|. .+-.++... +
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~l----~~ 103 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDLL----RD 103 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHHH----hc
Confidence 3344443332344578899999999999999999999975 6788888877665 233444443 4
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC-C
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-D 198 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR-~ 198 (375)
...+-|||+||+. +... ...-+ .|..+|+ |. ......+|+|.+|+|+-..++.-..- .
T Consensus 104 ~~~kFIlf~DDLs--Fe~~------d~~yk----~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 104 RPYKFILFCDDLS--FEEG------DTEYK----ALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDRE 162 (249)
T ss_pred CCCCEEEEecCCC--CCCC------cHHHH----HHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhcc
Confidence 4567799999974 1111 11122 3334444 33 23456899999999998777665432 1
Q ss_pred --------------------CcceEEEe--CCCHHHHHHhhhhhcCCCCCCH
Q 017204 199 --------------------GRMEKFYW--APTREDRIGVCKGIFRNDNVAD 228 (375)
Q Consensus 199 --------------------gRfd~~i~--~P~~~~R~~Il~~~l~~~~v~~ 228 (375)
.||-..+. .|+.++-.+|++.++...+++.
T Consensus 163 ~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 163 DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 25555555 7899999999988887654443
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.13 E-value=1.2e-09 Score=120.25 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=90.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC-----CCCChHHHH----HHHHHHHHHHHHhCCcee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCC 125 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~-----~~Ge~~~~i----r~~F~~A~~~~~~~~p~I 125 (375)
|...+||+||||||||++|+++|..+ +.+++.++.+++.+. .+|.+...+ ...+.. .++....+|
T Consensus 594 p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~---~v~~~p~~v 670 (852)
T TIGR03346 594 PIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTE---AVRRKPYSV 670 (852)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHH---HHHcCCCcE
Confidence 34568899999999999999999987 457888887765432 222111000 011211 124555679
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---------------
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--------------- 190 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~--------------- 190 (375)
|||||||++. ..+...|++++++.... ++.-......+.+||+|||....
T Consensus 671 lllDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~ 735 (852)
T TIGR03346 671 VLFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMR 735 (852)
T ss_pred EEEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHH
Confidence 9999998653 23456777777733211 11111233467899999998321
Q ss_pred ----------CChhhcCCCcceEEEe--CCCHHHHHHhhhhhc
Q 017204 191 ----------LYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 221 (375)
Q Consensus 191 ----------Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l 221 (375)
+.|.|+ .|+|.++. +++.++..+|+...+
T Consensus 736 ~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 736 EAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred HHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence 345666 48987666 788888888866554
No 142
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.2e-09 Score=107.82 Aligned_cols=157 Identities=13% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
-+.|..+||+||+|+|||++|+++|+.+.+. ++.+.... .++ .-+...||++-
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHH
Confidence 5678899999999999999999999998652 11121100 000 11345677776
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+...-..+...|++||++|++... ....|+..+. ++..++++|.+|++++.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLE-------------EPSGDTVLLLISHQPSRL 149 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChhhC
Confidence 66532223456779999999976432 1234555555 556778999999999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHH---HHHHHhcCCChhhHHH
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDF 245 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~---~la~lt~gf~gadl~~ 245 (375)
.|.++. |+..+.. .|+.++-.+.+..... ..+.+ .++.++.|-++..+.+
T Consensus 150 l~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 150 LPTIKS--RCQQQACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred cHHHHh--hceeeeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHHHHHHH
Confidence 999985 7777666 7888888877765432 22332 3556666655554443
No 143
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.13 E-value=7.7e-10 Score=107.40 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=87.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccCCCCChHHHHHHHHHHHHHHHH--hCCceeeeeccccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDA 133 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~--~~~p~IL~iDEiD~ 133 (375)
.++||||||||||++++++++++.. .++.++.+.-. ....++..+........ ...+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 4799999999999999999999732 34444433211 11223333333211111 13467999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~ 212 (375)
+.... ...|..+++ .......+|+++|.+..+.+++.+ |+..+.. .|+.++
T Consensus 114 l~~~~-------------~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~e 165 (319)
T PRK00440 114 LTSDA-------------QQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEA 165 (319)
T ss_pred CCHHH-------------HHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHH
Confidence 63211 123444444 122335677788888888888876 5554444 788888
Q ss_pred HHHhhhhhcCCCC--CCHHHHHHHhcC
Q 017204 213 RIGVCKGIFRNDN--VADDDIVKLVDT 237 (375)
Q Consensus 213 R~~Il~~~l~~~~--v~~~~la~lt~g 237 (375)
...+++.++...+ ++.+.+..++..
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYV 192 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888776654 455555555443
No 144
>PRK08727 hypothetical protein; Validated
Probab=99.12 E-value=6.1e-10 Score=104.78 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=88.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
...++||||+|||||+|+.++++++ |...+.++..++. ..+.+.+.. -.+..+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCccccc
Confidence 3459999999999999999998774 4455556544322 122233332 2345699999999876
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCCC---ChhhcCCCcc--eEEEe--C
Q 017204 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTL---YAPLIRDGRM--EKFYW--A 207 (375)
Q Consensus 136 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~~~~L---d~ALlR~gRf--d~~i~--~ 207 (375)
+... . ...+.++++ .. ...+..||+|+| .|..+ +++|.+ || -..+. .
T Consensus 107 ~~~~--~---------~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~ 161 (233)
T PRK08727 107 GQRE--D---------EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPV 161 (233)
T ss_pred CChH--H---------HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecC
Confidence 5432 1 112222322 11 112345777776 45544 688886 53 22233 7
Q ss_pred CCHHHHHHhhhhhcCC--CCCCHHHHHHHhcCCCh
Q 017204 208 PTREDRIGVCKGIFRN--DNVADDDIVKLVDTFPG 240 (375)
Q Consensus 208 P~~~~R~~Il~~~l~~--~~v~~~~la~lt~gf~g 240 (375)
|+.++|.+|++.+... ..++.+.+.-++..+.|
T Consensus 162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 9999999999876543 46677777777776664
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.12 E-value=9.9e-10 Score=120.93 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=87.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------------CCCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------------~~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
.+||+||||||||++|+++|+.+ +.+++.++.+++... |+|... ...+..+ ++....+|
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~---~g~l~~~---v~~~p~~v 673 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE---GGYLTEA---VRRRPYSV 673 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch---hHHHHHH---HHhCCCCe
Confidence 58999999999999999999987 346887877766432 122111 0112222 23444589
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----------------
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----------------- 188 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~----------------- 188 (375)
|||||+|++.+ .+...|++++++.... ++.-......+.+||+|||..
T Consensus 674 LllDEieka~~-------------~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~ 738 (857)
T PRK10865 674 ILLDEVEKAHP-------------DVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMK 738 (857)
T ss_pred EEEeehhhCCH-------------HHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHH
Confidence 99999986532 2456677777632111 111112334567899999973
Q ss_pred --------CCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhc
Q 017204 189 --------STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 221 (375)
Q Consensus 189 --------~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l 221 (375)
..+.|+|+. |+|.++. +++.++...|++..+
T Consensus 739 ~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 739 ELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 234567774 8976665 678888888866554
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.11 E-value=4.2e-10 Score=123.57 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 017204 57 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 57 ~~p~g-lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------------~~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
..|.+ +||+||||||||++|+++|+.+ +.+++.++.+++.+. |+|-.+. ..+.+.. +.
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~----~~ 609 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAV----RK 609 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHH----Hh
Confidence 34544 7899999999999999999997 357888877766322 3332111 1222222 45
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 189 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 189 (375)
...+||||||+|++.+ .+...|+++++......-.| ......+.+||+|||-..
T Consensus 610 ~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g--~~v~~~~~i~I~Tsn~g~ 663 (821)
T CHL00095 610 KPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKG--RTIDFKNTLIIMTSNLGS 663 (821)
T ss_pred CCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCC--cEEecCceEEEEeCCcch
Confidence 5568999999997633 24467777777322111111 123456789999999653
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=5.2e-10 Score=116.53 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------
Q 017204 33 YIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------ 86 (375)
Q Consensus 33 ~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------ 86 (375)
|-|..|.|.+....++..+. ....+.|..+|||||||+|||++|+++|+.+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 44555555444333322221 1233678889999999999999999999997431
Q ss_pred eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcccc
Q 017204 87 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ 166 (375)
Q Consensus 87 ~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~ 166 (375)
++.++++. ......||++...+...-..+...|++|||+|.+... ..+.|+..+.
T Consensus 88 v~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~-------------A~NALLK~LE------ 142 (535)
T PRK08451 88 IIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE-------------AFNALLKTLE------ 142 (535)
T ss_pred EEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHHh------
Confidence 12222111 0123456666654310000234469999999866321 1234555555
Q ss_pred CCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCC--CHHHHHHHhc
Q 017204 167 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLVD 236 (375)
Q Consensus 167 l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v--~~~~la~lt~ 236 (375)
++...+.+|.+|+++..|.++++. |+.++.. .++.++..+.++.++...++ +.+.+..++.
T Consensus 143 -------Epp~~t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 143 -------EPPSYVKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred -------hcCCceEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 334557788888999999999886 6655555 67788877777777766554 4444443433
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.11 E-value=6.4e-10 Score=118.33 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc-------cCCCCChHHHHHHHHHHHHH----
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLIRQRYREAAD---- 116 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~-------s~~~Ge~~~~ir~~F~~A~~---- 116 (375)
.|..++|+||||||||++|+++++.. +.+|+.+++..+. ..+.|.... ..+..+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 45679999999999999999998765 3568888877652 112222111 11111111
Q ss_pred ---------HHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc---------------
Q 017204 117 ---------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--------------- 172 (375)
Q Consensus 117 ---------~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~--------------- 172 (375)
.+......+|||||++.+... .+..|+.++++....-..+.+.
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 112334579999999865322 2334445554221000011110
Q ss_pred cCCCCCceEE-EEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC
Q 017204 173 KEENPRVPII-VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN 225 (375)
Q Consensus 173 ~~~~~~V~VI-~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~ 225 (375)
......+++| +|||.++.++++|+. ||..+.. ..+.++...|++.++...+
T Consensus 318 ~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 318 EGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred cCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 0112234444 466778999999875 8887666 6788999999988876544
No 149
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=2.8e-10 Score=112.23 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=87.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc--CCCCChHHHHH----HHHHHHH-HHHHhCCceeeeeccc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAA-DIIKKGKMCCLMINDL 131 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s--~~~Ge~~~~ir----~~F~~A~-~~~~~~~p~IL~iDEi 131 (375)
-..+||.||||||||++|+++|..++.+|+.+.+..-.. ...|...-..+ ..|..-. -+..... +|+|+|||
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEI 121 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEI 121 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEecc
Confidence 345999999999999999999999999999988764432 22333221111 0010000 0000111 59999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-----CCCCCChhhcCCCcceEEEe
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW 206 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-----~~~~Ld~ALlR~gRfd~~i~ 206 (375)
+...+ .++..|+..++. ..+.+++.....-....+||+|+| ....|++|+++ ||-..++
T Consensus 122 nra~p-------------~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 122 NRAPP-------------EVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred ccCCH-------------HHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 85433 334566666662 122333331112335678888889 78889999998 8855555
Q ss_pred --CC-CHHHHHHhhhhhc
Q 017204 207 --AP-TREDRIGVCKGIF 221 (375)
Q Consensus 207 --~P-~~~~R~~Il~~~l 221 (375)
.| ..++...+.....
T Consensus 186 v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 186 VDYPDSEEEERIILARVG 203 (329)
T ss_pred cCCCCchHHHHHHHHhCc
Confidence 56 5555555544443
No 150
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=5.5e-10 Score=118.35 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe---cc--------------Cccc--cCCCCChHHHHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA--------------GELE--SGNAGEPAKLIRQRYREAADI 117 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v---s~--------------s~l~--s~~~Ge~~~~ir~~F~~A~~~ 117 (375)
+.+..+|||||||+|||++|+++|+.+++..-.- .+ .++. +....-....+|++.+.+...
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~ 115 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR 115 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC
Confidence 5677899999999999999999999986532100 00 0000 000112234556655544111
Q ss_pred HHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC
Q 017204 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 197 (375)
Q Consensus 118 ~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR 197 (375)
-......|+||||+|.+... .. +.|+..++ +....+++|++|+..+.+.+.++.
T Consensus 116 p~~~~~kVvIIDEa~~L~~~------------a~-naLLk~LE-------------epp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 116 PALARYKVYIIDEVHMLSTA------------AF-NALLKTLE-------------EPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred cccCCeEEEEEeChHhCCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEeCChhhhhHHHHh
Confidence 11345679999999876421 12 23445555 233456777788888888888865
Q ss_pred CCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHHHHHH
Q 017204 198 DGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 234 (375)
Q Consensus 198 ~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~la~l 234 (375)
|+.++.. .++..+...+++.+....+ ++.+.+..+
T Consensus 170 --R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~L 207 (585)
T PRK14950 170 --RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAI 207 (585)
T ss_pred --ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5655444 6778888877777665544 444443333
No 151
>PHA02244 ATPase-like protein
Probab=99.08 E-value=4.1e-10 Score=111.91 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc---CCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s---~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
...|||+||||||||++|+++|..++.+|+.++...-.. .++..........|-+| .....+|+|||+|.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 345999999999999999999999999999887421000 11121112222334343 3456899999998654
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----------CCCChhhcCCCcceEE
Q 017204 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 204 (375)
Q Consensus 136 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----------~~Ld~ALlR~gRfd~~ 204 (375)
+. +...|..++++.. ..+.+.. .....+.-+|+|+|.+ ..|++|++- ||-.+
T Consensus 194 p~-------------vq~~L~~lLd~r~-l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I 256 (383)
T PHA02244 194 PE-------------ALIIINSAIANKF-FDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPI 256 (383)
T ss_pred HH-------------HHHHHHHHhccCe-EEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEe
Confidence 32 1223333343211 1111110 1123577899999973 678999986 88654
Q ss_pred Ee-CCC
Q 017204 205 YW-APT 209 (375)
Q Consensus 205 i~-~P~ 209 (375)
.. .|+
T Consensus 257 ~~dyp~ 262 (383)
T PHA02244 257 EFDYDE 262 (383)
T ss_pred eCCCCc
Confidence 44 566
No 152
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.8e-09 Score=108.22 Aligned_cols=163 Identities=14% Similarity=0.127 Sum_probs=101.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE-----------e--c-------------cCcc--ccC---CCC--
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-----------M--S-------------AGEL--ESG---NAG-- 101 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~-----------v--s-------------~s~l--~s~---~~G-- 101 (375)
.-+.|..+||+||+|+||+++|.++|+.+-+.--. + . -+++ ... ..|
T Consensus 37 ~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 37 SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccc
Confidence 44788899999999999999999999997432100 0 0 0000 000 001
Q ss_pred ----ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 102 ----EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 102 ----e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
-....||++-+.+......+.+.|++|||+|.+.. .....|+..+. +...
T Consensus 117 ~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~ 170 (365)
T PRK07471 117 LRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPA 170 (365)
T ss_pred ccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCC
Confidence 02344666555542222357788999999986532 12234555555 4456
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC-HHHHHHHhcCCChhhHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~-~~~la~lt~gf~gadl~~ 245 (375)
++++|.+|+.++.+.+.++. |+..+-. .|+.++-.+++........-. ...+..++.|-++..+.+
T Consensus 171 ~~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67888999999999888764 7777666 788999888887754321111 124666666666555443
No 153
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-09 Score=106.32 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=114.2
Q ss_pred ccccccCCchhH--HHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-----eEEeccCccccCC
Q 017204 27 NTIDGLYIAPAF--MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGN 99 (375)
Q Consensus 27 ~~~~~~~i~~~~--~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-----~i~vs~s~l~s~~ 99 (375)
+++...|+|+++ +|.-..++..-+........|..+++|||||||||.+++.+++++.-. ++.+++-...+.+
T Consensus 8 ~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 8 DVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 345666777775 233333333333332233345569999999999999999999997544 7888877654321
Q ss_pred ---------------CCChHHHHHHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 017204 100 ---------------AGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163 (375)
Q Consensus 100 ---------------~Ge~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~ 163 (375)
.|-+. .+.|+...+.+. .....||++||+|.+..+.+ ..|.+++.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r--- 148 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSS---LEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLR--- 148 (366)
T ss_pred HHHHHHHHHcCCCCCCCCch---HHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHh---
Confidence 12222 233333333334 56788999999999987753 23333333
Q ss_pred cccCCCccccCCCCCceEEEEeCCC---CCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhc----CCCCCCHHH---HH
Q 017204 164 CVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF----RNDNVADDD---IV 232 (375)
Q Consensus 164 ~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l----~~~~v~~~~---la 232 (375)
. ......+|.||+.+|.. +.+||-+...-......+ +.+.++...|++.-. ....++... ++
T Consensus 149 ------~-~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia 221 (366)
T COG1474 149 ------A-PGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA 221 (366)
T ss_pred ------h-ccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 1 11226778999999987 468888765333334334 679999999976543 333344333 44
Q ss_pred HHhcCCCh
Q 017204 233 KLVDTFPG 240 (375)
Q Consensus 233 ~lt~gf~g 240 (375)
..+...+|
T Consensus 222 ~~~a~~~G 229 (366)
T COG1474 222 ALVAAESG 229 (366)
T ss_pred HHHHHcCc
Confidence 44444444
No 154
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.5e-10 Score=114.33 Aligned_cols=137 Identities=12% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChH----HHHHHHHHHHHHHHHhCCceeeeec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLMIN 129 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~----~~ir~~F~~A~~~~~~~~p~IL~iD 129 (375)
+...+-..+||+||||+|||.||-.+|...+.+|+.+-.++-+ +|-+| ..|+.+|+.| .++..+||++|
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DA----YkS~lsiivvD 605 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDA----YKSPLSIIVVD 605 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHh----hcCcceEEEEc
Confidence 4444557899999999999999999999999999985444322 23333 4689999999 89999999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh-hcCCCcceEEEeCC
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP 208 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A-LlR~gRfd~~i~~P 208 (375)
+|+.+..--. -..+.. .++.|+|+-++..+ .-...+.+|++||.+.+.|..- ++- .|+..+..|
T Consensus 606 diErLiD~vp--IGPRfS-N~vlQaL~VllK~~----------ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 606 DIERLLDYVP--IGPRFS-NLVLQALLVLLKKQ----------PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred chhhhhcccc--cCchhh-HHHHHHHHHHhccC----------CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 9998853221 111222 34556777676611 1223577899999876644332 222 566777766
Q ss_pred CHHH
Q 017204 209 TRED 212 (375)
Q Consensus 209 ~~~~ 212 (375)
+...
T Consensus 671 nl~~ 674 (744)
T KOG0741|consen 671 NLTT 674 (744)
T ss_pred ccCc
Confidence 5443
No 155
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=1.3e-09 Score=103.59 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=78.2
Q ss_pred cccccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 16 ISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
+...++..+|+|+.... + ..+.+...++.|..... ....+++|+||||||||+||.+||+++ |..++.++.
T Consensus 64 i~~~~~~~tFdnf~~~~---~--~~~~a~~~a~~~a~~~~-~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 64 IQPLHRKCSFANYQVQN---D--GQRYALSQAKSIADELM-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CCcccccCCcCCcccCC---h--hHHHHHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 34455556667754321 1 12223334444433211 124689999999999999999999997 566777777
Q ss_pred CccccCCCCChHHHHHHHHHHH---HHHH-HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 017204 93 GELESGNAGEPAKLIRQRYREA---ADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168 (375)
Q Consensus 93 s~l~s~~~Ge~~~~ir~~F~~A---~~~~-~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~ 168 (375)
+++.. .++..|... .+.+ .-....+|+|||+...... ......|.++++
T Consensus 138 ~~l~~--------~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s-----------~~~~~~l~~ii~-------- 190 (248)
T PRK12377 138 PDVMS--------RLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET-----------KNEQVVLNQIID-------- 190 (248)
T ss_pred HHHHH--------HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC-----------HHHHHHHHHHHH--------
Confidence 76653 222222110 0111 1356789999999654221 112345555655
Q ss_pred CccccCCCCCceEEEEeCCC
Q 017204 169 GMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 169 ~~~~~~~~~~V~VI~TTN~~ 188 (375)
. ....+.++|.|||..
T Consensus 191 -~---R~~~~~ptiitSNl~ 206 (248)
T PRK12377 191 -R---RTASMRSVGMLTNLN 206 (248)
T ss_pred -H---HHhcCCCEEEEcCCC
Confidence 1 123346899999975
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.03 E-value=9.6e-10 Score=106.77 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=82.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC------------------------CceEEeccCccccCCCCChHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg------------------------~~~i~vs~s~l~s~~~Ge~~~~ir~~F~ 112 (375)
+.|..+||+||||+|||++|.++|+++. -.++.++++...... -....|+++-.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 5566899999999999999999999987 356667777554322 11223333333
Q ss_pred HHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 017204 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 192 (375)
.....-..+..-|++|||+|.+.... ...|+..+. ++..+.++|.+||.++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~A-------------~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTEDA-------------ANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHHH-------------HHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 32000012456899999999876532 123333333 5667789999999999999
Q ss_pred hhhcCCCcceEEEeCC
Q 017204 193 APLIRDGRMEKFYWAP 208 (375)
Q Consensus 193 ~ALlR~gRfd~~i~~P 208 (375)
+.+.. |+..+...|
T Consensus 154 ~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 154 PTIRS--RCQRIRFKP 167 (325)
T ss_pred chhhh--cceeeecCC
Confidence 98876 777666644
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.3e-09 Score=103.70 Aligned_cols=184 Identities=10% Similarity=0.047 Sum_probs=105.9
Q ss_pred CCchhHHHHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCce------EEe--cc----------
Q 017204 33 YIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------IMM--SA---------- 92 (375)
Q Consensus 33 ~i~~~~~d~~~~~~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~------i~v--s~---------- 92 (375)
.-|..+.+.+....++..+. ....+.|..+||+||+|+|||++|+.+|+.+.+.. ... .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 34444444333333433332 12446788999999999999999999999986521 000 00
Q ss_pred ----Cccc---cCC--------CCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHH
Q 017204 93 ----GELE---SGN--------AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 157 (375)
Q Consensus 93 ----s~l~---s~~--------~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~ 157 (375)
+++. ..+ ..-+...||.+-+........+...|++|||+|.+... . ...|+.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------a-anaLLk 163 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------A-ANAILK 163 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------H-HHHHHH
Confidence 0110 000 00113445554443322123556779999999976322 1 233555
Q ss_pred hhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHH---HHH
Q 017204 158 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVK 233 (375)
Q Consensus 158 lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~---la~ 233 (375)
.+. ++..++++|..|+.++.+.|.++. |+..+-. .|+.++..++++......+++.+. +.+
T Consensus 164 ~LE-------------Epp~~~~fiLit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~ 228 (351)
T PRK09112 164 TLE-------------EPPARALFILISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQ 228 (351)
T ss_pred HHh-------------cCCCCceEEEEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 555 444567778888889999888764 7754444 789999998887744333344444 444
Q ss_pred HhcCCChhhHH
Q 017204 234 LVDTFPGQSID 244 (375)
Q Consensus 234 lt~gf~gadl~ 244 (375)
++.|-+...+.
T Consensus 229 ~s~G~pr~Al~ 239 (351)
T PRK09112 229 RSKGSVRKALL 239 (351)
T ss_pred HcCCCHHHHHH
Confidence 45544444443
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=3.1e-09 Score=104.10 Aligned_cols=150 Identities=12% Similarity=0.112 Sum_probs=92.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc--cCCCCC--hHHHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGE--PAKLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~--s~~~Ge--~~~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.-+.|..+||+||+|+|||++|+++|+.+-+....-+.+++. ...-|. +...||++-+.+...-..+...|++||+
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 346788999999999999999999999874421111111110 000111 2345666665542111245567999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCC
Q 017204 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 209 (375)
Q Consensus 131 iD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~ 209 (375)
+|.+... ....|+..+. ++.+++++|.+|+.++.|.|.++. |+..+.. .|+
T Consensus 102 ad~m~~~-------------a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~ 153 (313)
T PRK05564 102 SEKMTEQ-------------AQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLNRLS 153 (313)
T ss_pred hhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcC
Confidence 9865221 1234555555 455667888888899999999875 6655444 678
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHH
Q 017204 210 REDRIGVCKGIFRNDNVADDDIVKL 234 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~~v~~~~la~l 234 (375)
.++....+...+. .++.+.+..+
T Consensus 154 ~~~~~~~l~~~~~--~~~~~~~~~l 176 (313)
T PRK05564 154 KEEIEKFISYKYN--DIKEEEKKSA 176 (313)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHH
Confidence 8887777765543 4555544333
No 159
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-09 Score=116.76 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCCCc-EEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccC------------CCCChHHHHHHHHHHHHHH
Q 017204 54 PNIKVPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG------------NAGEPAKLIRQRYREAADI 117 (375)
Q Consensus 54 ~~~~~p~-glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~------------~~Ge~~~~ir~~F~~A~~~ 117 (375)
..-+.|. ..||.||+|+|||.||+++|..+. ..++.++.|++..+ |+|=.+. ..+.+|
T Consensus 515 ~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEa--- 588 (786)
T COG0542 515 GDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEA--- 588 (786)
T ss_pred CCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHh---
Confidence 3444454 456789999999999999999997 78999999988654 4443221 122222
Q ss_pred HHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 017204 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 118 ~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 187 (375)
+++...|||+||||++..++ +..+|++++|+-...- +.-+..+..+.+||+|||-
T Consensus 589 VRr~PySViLlDEIEKAHpd-------------V~nilLQVlDdGrLTD--~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRLTD--GQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred hhcCCCeEEEechhhhcCHH-------------HHHHHHHHhcCCeeec--CCCCEEecceeEEEEeccc
Confidence 36677899999999975543 4467888888422111 1112334577899999994
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=3.1e-09 Score=113.04 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=90.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-------------------------eEEeccCccccCCCCChHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQ 109 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-------------------------~i~vs~s~l~s~~~Ge~~~~ir~ 109 (375)
.-+.|..+|||||+|+|||++|+++|+.+.+. ++.+++. -..+...|+.
T Consensus 35 ~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~------~~~~vd~Ir~ 108 (614)
T PRK14971 35 TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA------SNNSVDDIRN 108 (614)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc------ccCCHHHHHH
Confidence 34678899999999999999999999998642 1222211 0112455666
Q ss_pred HHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 017204 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 189 (375)
Q Consensus 110 ~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 189 (375)
+...+...--.+...|++|||+|.+... ....|+..++ +....+++|++|+...
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~Ls~~-------------a~naLLK~LE-------------epp~~tifIL~tt~~~ 162 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHMLSQA-------------AFNAFLKTLE-------------EPPSYAIFILATTEKH 162 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECcccCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEeCCch
Confidence 6665511111334569999999876321 1234555555 3344566777777778
Q ss_pred CCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC
Q 017204 190 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 190 ~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~ 227 (375)
.|-++|+. |+..+-. .++.++....++.++...++.
T Consensus 163 kIl~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 163 KILPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred hchHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 89999876 6655444 678888888887776665554
No 161
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.1e-08 Score=101.39 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceE-------------------------EeccCcccc--------------
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------------------------MMSAGELES-------------- 97 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i-------------------------~vs~s~l~s-------------- 97 (375)
+.|.++||+||+|+||+++|+++|+.+.+..- .+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 89999999999999999999999999866321 111110000
Q ss_pred CCCC---------ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 017204 98 GNAG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168 (375)
Q Consensus 98 ~~~G---------e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~ 168 (375)
.-.| -....||.+.+.+......+.-.|++||+.|.+... ....|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhc--------
Confidence 0001 123456666555411112345569999999876322 2234555555
Q ss_pred CccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC-HHHHHHHhcCCChhhHHH
Q 017204 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 169 ~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~-~~~la~lt~gf~gadl~~ 245 (375)
++.+++++|.+|++++.|.|.++. |+..+.. +|+.++..+.+... +++ .+.+..++.|-++..+++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHHH
Confidence 677889999999999999999986 7766555 78888888887654 222 233555666655555544
No 162
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.96 E-value=5.1e-09 Score=99.36 Aligned_cols=136 Identities=10% Similarity=0.185 Sum_probs=77.7
Q ss_pred cccccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 16 ISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
+..-.+..+|+|+... +. ..+.+...++.|..... ....+++|+|+||||||+|+.+||+++ |..++.++.
T Consensus 62 i~~~~~~~tFdnf~~~----~~-~q~~al~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 62 IRPLHQNCSFENYRVE----CE-GQMNALSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred CCccccCCccccccCC----Cc-hHHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 3444455666765332 11 12224445555553221 113589999999999999999999997 677888887
Q ss_pred CccccCCCCChHHHHHHHHHHH----HHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccC
Q 017204 93 GELESGNAGEPAKLIRQRYREA----ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167 (375)
Q Consensus 93 s~l~s~~~Ge~~~~ir~~F~~A----~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l 167 (375)
+++.+. ++..|..+ ..++. -....+|+|||++..... ......|.++++
T Consensus 136 ~~l~~~--------l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s-----------~~~~~~l~~Ii~------- 189 (244)
T PRK07952 136 ADIMSA--------MKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTES-----------RYEKVIINQIVD------- 189 (244)
T ss_pred HHHHHH--------HHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCC-----------HHHHHHHHHHHH-------
Confidence 777632 22222110 01111 235789999999764311 112234444444
Q ss_pred CCccccCCCCCceEEEEeCCC
Q 017204 168 PGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 168 ~~~~~~~~~~~V~VI~TTN~~ 188 (375)
. ....+.++|+|||..
T Consensus 190 -~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 190 -R----RSSSKRPTGMLTNSN 205 (244)
T ss_pred -H----HHhCCCCEEEeCCCC
Confidence 1 122346899999964
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.95 E-value=3.5e-09 Score=104.64 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHH-
Q 017204 35 APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQR- 110 (375)
Q Consensus 35 ~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~- 110 (375)
.|+-...-+...+++|.....- ...+++||||||||||+||.+||+++ |..++.++..++.+.. +..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~-~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l--------~~~~ 230 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL--------REIR 230 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH--------HHHH
Confidence 3444444445555656653332 23789999999999999999999996 6778888888775322 111
Q ss_pred HHH---HHH-HHHhCCceeeeecccccc
Q 017204 111 YRE---AAD-IIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 111 F~~---A~~-~~~~~~p~IL~iDEiD~i 134 (375)
|.. ... +-.-....+|+|||+...
T Consensus 231 ~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 231 FNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred hccchhHHHHHHHhccCCEEEEeccCCC
Confidence 110 000 111234579999999543
No 164
>PRK06921 hypothetical protein; Provisional
Probab=98.91 E-value=1e-08 Score=98.48 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccCccccCCCCChHHHHHHHHHHHHHHH-HhCCceeeeecccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLD 132 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~-~~~~p~IL~iDEiD 132 (375)
...+++||||||||||+|+.+||+++ |..++.++..++.. .++..|....+.+ .-....+|+|||+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 35689999999999999999999985 56667777665542 2233333221122 23456899999995
Q ss_pred c
Q 017204 133 A 133 (375)
Q Consensus 133 ~ 133 (375)
.
T Consensus 188 ~ 188 (266)
T PRK06921 188 K 188 (266)
T ss_pred c
Confidence 4
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.2e-08 Score=97.27 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCce----------EEeccCccc--cC---CCCC------------------
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------ 102 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~----------i~vs~s~l~--s~---~~Ge------------------ 102 (375)
-+.|..+||+||+|+||+.+|.++|+.+-+.- ...+.+++. .. ..|.
T Consensus 23 ~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (314)
T PRK07399 23 NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPP 102 (314)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccc
Confidence 36788999999999999999999999964321 011111111 00 0011
Q ss_pred --hHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 103 --PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 103 --~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
....||++-+.+...--.+...|++||++|.+... ....|+..+. ++. +.+
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-------------aaNaLLK~LE-------------EPp-~~~ 155 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-------------AANALLKTLE-------------EPG-NGT 155 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------------HHHHHHHHHh-------------CCC-CCe
Confidence 12345666555411112456679999999876321 2245556666 333 456
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCH--HHHHHHhcCCChhhHHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~--~~la~lt~gf~gadl~~~ 246 (375)
+|.+|+.++.|-|.++. |+..+-. .|+.++..++++........+. ..+..++.|=++..+...
T Consensus 156 fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence 78888999999999985 7776666 7889999888887654444443 567777777776666543
No 166
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.89 E-value=3.9e-09 Score=104.46 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=53.8
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcCCC
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 199 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR~g 199 (375)
...+||+||++.+.. .+++.|++.++... .++.+|.. .....++++|+|+|..+ .++++|+.
T Consensus 128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--
Confidence 346999999986532 23455556665322 12333331 12345788999999644 68999986
Q ss_pred cceEEEe--CC-CHHHHHHhhhhhc
Q 017204 200 RMEKFYW--AP-TREDRIGVCKGIF 221 (375)
Q Consensus 200 Rfd~~i~--~P-~~~~R~~Il~~~l 221 (375)
||...+. .| +.++|.+|++...
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 8887777 34 4488999987754
No 167
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.9e-08 Score=98.04 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe----CCCCCCChhhc
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLI 196 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT----N~~~~Ld~ALl 196 (375)
.+..|+||||||+++.+.+.+ ...+...-|+.=|+-+....+... .|+......+++|++. ..|++|=|.|-
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g-~~dvSREGVQRDlLPlvEGstV~T---KyG~VkTdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSG-GPDVSREGVQRDLLPLVEGSTVST---KYGPVKTDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred HhcCeEEEehhhHHHhcCCCC-CCCcchhhhcccccccccCceeec---cccccccceEEEEecCceecCChhhcChhhc
Confidence 345699999999999876522 226677777777777766433222 2444667888999886 47888888885
Q ss_pred CCCcceEEEe--CCCHHHHHHhh
Q 017204 197 RDGRMEKFYW--APTREDRIGVC 217 (375)
Q Consensus 197 R~gRfd~~i~--~P~~~~R~~Il 217 (375)
|||-..++ .-+.++-..|+
T Consensus 325 --GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 325 --GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred --CCCceEEEcccCCHHHHHHHH
Confidence 89998888 56788877774
No 168
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.86 E-value=1.7e-08 Score=98.95 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHH--HHHH-HhCCceeeeecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA--ADII-KKGKMCCLMIND 130 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A--~~~~-~~~~p~IL~iDE 130 (375)
+..+|++||||||||||+|+.|+|+++ |..+..++.+++... ++..|..- .+.+ .-....||+|||
T Consensus 154 ~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~--------lk~~~~~~~~~~~l~~l~~~dlLiIDD 225 (306)
T PRK08939 154 EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE--------LKNSISDGSVKEKIDAVKEAPVLMLDD 225 (306)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH--------HHHHHhcCcHHHHHHHhcCCCEEEEec
Confidence 356899999999999999999999997 677777777766522 22222110 0111 134568999999
Q ss_pred ccc
Q 017204 131 LDA 133 (375)
Q Consensus 131 iD~ 133 (375)
|.+
T Consensus 226 iG~ 228 (306)
T PRK08939 226 IGA 228 (306)
T ss_pred CCC
Confidence 953
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=98.85 E-value=1.8e-08 Score=109.77 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=99.9
Q ss_pred EEEEc--CCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhC--Cceeeeecccc
Q 017204 62 LGIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG--KMCCLMINDLD 132 (375)
Q Consensus 62 lLL~G--PPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~--~p~IL~iDEiD 132 (375)
-+..| |++.|||++|+++|+++ +.+++.+++++-. +...||++.+.++...... +..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 35568 99999999999999998 5689999999643 2346777776652211111 23699999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 211 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~ 211 (375)
.+.. ..++.|+..++ +...++.+|++||.+..|.++|+. ||..+-. .|+.+
T Consensus 641 ~Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~ 692 (846)
T PRK04132 641 ALTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDE 692 (846)
T ss_pred cCCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHH
Confidence 8743 12455666666 445678999999999999999885 7766666 67888
Q ss_pred HHHHhhhhhcCCCCC--CHHHHHHHhc
Q 017204 212 DRIGVCKGIFRNDNV--ADDDIVKLVD 236 (375)
Q Consensus 212 ~R~~Il~~~l~~~~v--~~~~la~lt~ 236 (375)
+-..+++.+....++ +.+.+..++.
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~ 719 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILY 719 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 888777777665544 4554444443
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=4.3e-08 Score=96.50 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE----------e---ccCccc----c-CCCC------ChHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------M---SAGELE----S-GNAG------EPAKLIRQR 110 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~----------v---s~s~l~----s-~~~G------e~~~~ir~~ 110 (375)
.-+.|..+||+||+|+||+++|.++|+.+-+.-.. + +-+++. . ...| -....||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 44788899999999999999999999986542100 0 001110 0 0011 124456666
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
-+.+...-..+.-.|++||++|.+... ..+.|+..+. ++..++++|.+|+.++.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAINRA-------------ACNALLKTLE-------------EPSPGRYLWLISAQPAR 155 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhh-------------CCCCCCeEEEEECChhh
Confidence 655411111344579999999976322 2244555666 66678899999999999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHH---HHHHHhcCCChhhHHHH
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~---~la~lt~gf~gadl~~~ 246 (375)
|.|.++. |+..+-. .|+.++-.+.+... +++.. .+..++.|-++..+++.
T Consensus 156 lLpTIrS--RCq~i~~~~~~~~~~~~~L~~~----~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRS--RCQRLEFKLPPAHEALAWLLAQ----GVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHh--hheEeeCCCcCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHHHHh
Confidence 9999875 8877766 68888777776542 45544 46667777666665543
No 171
>PRK08181 transposase; Validated
Probab=98.84 E-value=6.1e-09 Score=100.17 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
...+++|+||||||||+||.++++++ |..++.++..++....... ........+. .-.++.+|+|||+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence 34679999999999999999999764 6677778877766432100 0000111222 134578999999976
Q ss_pred ccC
Q 017204 134 GAG 136 (375)
Q Consensus 134 i~~ 136 (375)
...
T Consensus 179 ~~~ 181 (269)
T PRK08181 179 VTK 181 (269)
T ss_pred ccC
Confidence 543
No 172
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.9e-08 Score=96.95 Aligned_cols=184 Identities=20% Similarity=0.232 Sum_probs=107.7
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEeccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG 93 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs~s 93 (375)
-...|+|+|++.+. . ......+++++...+|. .-.-++||||.|.|||+|++|++++.. ..++.++..
T Consensus 80 l~~~ytFdnFv~g~----~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGP----S--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCC----c--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 34456666654433 2 44566667777666664 444599999999999999999999963 245566665
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc
Q 017204 94 ELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172 (375)
Q Consensus 94 ~l~s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~ 172 (375)
.+.+.++ ..+-....+..+ ..+-.+++||||+.+.++.. ++ ..+-.++..+.+
T Consensus 153 ~f~~~~v-------~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~--~q-----eefFh~FN~l~~------------ 206 (408)
T COG0593 153 DFTNDFV-------KALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALLE------------ 206 (408)
T ss_pred HHHHHHH-------HHHHhhhHHHHHHhhccCeeeechHhHhcCChh--HH-----HHHHHHHHHHHh------------
Confidence 5442221 111111111111 22456999999999988743 22 233333333322
Q ss_pred cCCCCCceEEEEeC-CCCC---CChhhcCCCcceEEEe----CCCHHHHHHhhhhhcCCCC--CCHHHHHHHhcCCChh
Q 017204 173 KEENPRVPIIVTGN-DFST---LYAPLIRDGRMEKFYW----APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 241 (375)
Q Consensus 173 ~~~~~~V~VI~TTN-~~~~---Ld~ALlR~gRfd~~i~----~P~~~~R~~Il~~~l~~~~--v~~~~la~lt~gf~ga 241 (375)
.++ -||.|+. -|.. +.|.|.. ||..-+. +|+.+.|.+|++......+ ++.+.+.-++..++..
T Consensus 207 ---~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 207 ---NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred ---cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 122 4555554 3444 4466664 6664333 7999999999988766554 4455555555555443
No 173
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=4.3e-08 Score=96.71 Aligned_cols=163 Identities=9% Similarity=0.059 Sum_probs=102.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE--ec--------------cCcc--ccCCCCC--hHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--MS--------------AGEL--ESGNAGE--PAKLIRQRYREA 114 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~--vs--------------~s~l--~s~~~Ge--~~~~ir~~F~~A 114 (375)
..+.|.++||+||+|+||+++|+++|+.+-+.--. -. .+++ .....|. +...||++-+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999997542100 00 0111 0000111 345677766655
Q ss_pred HHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 017204 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 194 (375)
......+.-.|++||++|++... ....|+..+. ++.+++++|.+|+.++.|.|.
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~~-------------AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTEA-------------AANALLKTLE-------------EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred hhccccCCceEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCchH
Confidence 22223556679999999976432 2245556666 677888999999999999999
Q ss_pred hcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHH
Q 017204 195 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 195 LlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~ 245 (375)
++. |+..+.. .|+.++-.+.+........-....+.+++.|-++..+++
T Consensus 154 I~S--RC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 154 IYS--RCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPLLALTF 203 (325)
T ss_pred HHh--hceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHHHHHHH
Confidence 875 7777666 677888777776543222111223445555555544443
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=5.2e-08 Score=96.34 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQR 110 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 110 (375)
.-+.|..+|||||+|+|||++|+++|+.+-+. +..+... .+. -+...||++
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l 98 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQS--IKKDQIRYL 98 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHH
Confidence 44678899999999999999999999996432 1112111 010 112345555
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
-+.+...-..+...|++|||+|.+... ....|+..++ ++...+.+|.+|+.++.
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LE-------------EPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLE-------------EPSGGTTAILLTENKHQ 152 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhc-------------CCCCCceEEEEeCChHh
Confidence 544411001345579999999865321 2245666666 55567788889999999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhh
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKG 219 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~ 219 (375)
|.|.++. |+..+.. .|+.++..++++.
T Consensus 153 ll~TIrS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHh--hceeeeCCCCCHHHHHHHHHH
Confidence 9999876 7766666 6788877776653
No 175
>PRK09087 hypothetical protein; Validated
Probab=98.80 E-value=6.7e-08 Score=90.66 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=77.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~ 139 (375)
.-++||||+|+|||+|++++++..+.. .++...+. ...+... . ..+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-----------~~~~~~~----~---~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-----------SDAANAA----A---EGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-----------hHHHHhh----h---cCeEEEECCCCCCC---
Confidence 348999999999999999999987654 33332222 1111111 1 25899999996521
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCC---CChhhcCCCcce--EEEe--CCCHH
Q 017204 140 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--APTRE 211 (375)
Q Consensus 140 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~~~~---Ld~ALlR~gRfd--~~i~--~P~~~ 211 (375)
++ .. |..+++ .. .... ..+|+|++ .|.. ..+.|+. ||. ..+. .|+.+
T Consensus 102 --~~-----~~----lf~l~n--------~~---~~~g-~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE-----TG----LFHLIN--------SV---RQAG-TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH-----HH----HHHHHH--------HH---HhCC-CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 11 222222 01 1112 34555554 3432 3566664 663 3333 89999
Q ss_pred HHHHhhhhhcCCC--CCCHHHHHHHhcCCCh
Q 017204 212 DRIGVCKGIFRND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 212 ~R~~Il~~~l~~~--~v~~~~la~lt~gf~g 240 (375)
+|.+|++.++... .++.+.+.-++..+.+
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 9999999888655 4556656555555554
No 176
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=88.43 Aligned_cols=150 Identities=13% Similarity=0.183 Sum_probs=95.6
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-h
Q 017204 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 120 (375)
Q Consensus 45 ~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~ 120 (375)
..++|-.......+-..+||||.-|||||+|++|+-++. |...+.|+..+|. -+-.+++.- + .
T Consensus 71 ~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~---------~Lp~l~~~L----r~~ 137 (287)
T COG2607 71 ALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA---------TLPDLVELL----RAR 137 (287)
T ss_pred HHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh---------hHHHHHHHH----hcC
Confidence 334443332344567889999999999999999999886 5567888877665 122333332 4 5
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc-C--
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI-R-- 197 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl-R-- 197 (375)
...-|||+||+- +. .....-+.+..+| + |. ......+|+|-+|+||-..|+.-+. +
T Consensus 138 ~~kFIlFcDDLS-----Fe---~gd~~yK~LKs~L----e--------G~-ve~rP~NVl~YATSNRRHLl~e~~~dn~~ 196 (287)
T COG2607 138 PEKFILFCDDLS-----FE---EGDDAYKALKSAL----E--------GG-VEGRPANVLFYATSNRRHLLPEDMKDNEG 196 (287)
T ss_pred CceEEEEecCCC-----CC---CCchHHHHHHHHh----c--------CC-cccCCCeEEEEEecCCcccccHhhhhCCC
Confidence 667899999983 11 1111223333333 3 32 2345678999999999888875432 1
Q ss_pred -----------------CCcceEEEe--CCCHHHHHHhhhhhcCCCCCCH
Q 017204 198 -----------------DGRMEKFYW--APTREDRIGVCKGIFRNDNVAD 228 (375)
Q Consensus 198 -----------------~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v~~ 228 (375)
..||-..+- .++.++-..|+..+....+++.
T Consensus 197 ~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 197 STGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 235555544 6778888888887776665554
No 177
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.5e-08 Score=104.79 Aligned_cols=158 Identities=14% Similarity=0.229 Sum_probs=101.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCce--EEecc------CccccC----------CCCChHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSA------GELESG----------NAGEPAKLIRQRYREAAD 116 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~--i~vs~------s~l~s~----------~~Ge~~~~ir~~F~~A~~ 116 (375)
.-+.+.+.||.||-|||||++||.+|+.+++.- ..--+ -++..+ -...+...||.+-+++.-
T Consensus 34 ~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y 113 (515)
T COG2812 34 NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNY 113 (515)
T ss_pred hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhcc
Confidence 446678899999999999999999999988752 11000 011111 111245667777777611
Q ss_pred HHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhc
Q 017204 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 196 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALl 196 (375)
.-..++.-|.+|||+.-+.. +..+ .|+..+. ++...|.+|.+|-.++.+++-++
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~------------~afN-ALLKTLE-------------EPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSK------------QAFN-ALLKTLE-------------EPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred CCccccceEEEEecHHhhhH------------HHHH-HHhcccc-------------cCccCeEEEEecCCcCcCchhhh
Confidence 11155667999999965432 2223 3333333 66788999999999999999988
Q ss_pred CCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHH--HHHHhcCCCh
Q 017204 197 RDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD--IVKLVDTFPG 240 (375)
Q Consensus 197 R~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~--la~lt~gf~g 240 (375)
. |+.++-+ .-+.++...-+..++..+++..++ +..+.....|
T Consensus 168 S--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 168 S--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred h--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 5 6666656 455567777788888777666443 4333333333
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.6e-08 Score=105.88 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=99.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~ 127 (375)
..-+|.|+||+|||.++.-+|... +..++.++-+.|. .+|-|+-|..++.+.++. ++..+.|||
T Consensus 192 NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~vILF 267 (786)
T COG0542 192 NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNVILF 267 (786)
T ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCeEEE
Confidence 345789999999999999999983 4566777777775 468999999999999988 777799999
Q ss_pred ecccccccCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-C----CCCCChhhcCCCcc
Q 017204 128 INDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-D----FSTLYAPLIRDGRM 201 (375)
Q Consensus 128 iDEiD~i~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~----~~~Ld~ALlR~gRf 201 (375)
||||..+.+.-+..+ ..... .++...| .++.+-+|++|. . .=.-|+||-| ||
T Consensus 268 IDEiHtiVGAG~~~G~a~DAa-NiLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RF 325 (786)
T COG0542 268 IDEIHTIVGAGATEGGAMDAA-NLLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER--RF 325 (786)
T ss_pred EechhhhcCCCcccccccchh-hhhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--cC
Confidence 999999987643211 11122 2222222 123345666664 2 3357999999 99
Q ss_pred eEEEe-CCCHHHHHHhhhhhcC
Q 017204 202 EKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 202 d~~i~-~P~~~~R~~Il~~~l~ 222 (375)
..+.- .|+.++-..|++.+-.
T Consensus 326 Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 326 QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred ceeeCCCCCHHHHHHHHHHHHH
Confidence 98887 8999999999887653
No 179
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.74 E-value=1.4e-08 Score=86.91 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccC-ccc-cCCCCChHHHH-HHHH--HHHHHHHHhCCceeeeeccccccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELE-SGNAGEPAKLI-RQRY--REAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s-~l~-s~~~Ge~~~~i-r~~F--~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
.|||+|+||+|||++|+++|+.+|..|..|... ++. +...|.+.-.- ...| ... ---..|+|+|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G-----Pif~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG-----PIFTNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE------TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecC-----hhhhceeeecccccCC
Confidence 389999999999999999999999999887653 232 00001000000 0000 000 0112499999996543
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcC
Q 017204 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 197 (375)
Q Consensus 136 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR 197 (375)
++ +++.|++.+. ...|.++|... .-....+||+|-|..+ .|+.|++-
T Consensus 76 pk-------------tQsAlLeam~-Er~Vt~~g~~~-~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 76 PK-------------TQSALLEAME-ERQVTIDGQTY-PLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp HH-------------HHHHHHHHHH-HSEEEETTEEE-E--SS-EEEEEE-TT--S------HHHHT
T ss_pred HH-------------HHHHHHHHHH-cCeEEeCCEEE-ECCCcEEEEEecCccccCceecCCHHHhc
Confidence 32 3455555554 12223223211 1224578999999876 68888763
No 180
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=8.6e-08 Score=95.01 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=103.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQR 110 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 110 (375)
..+.|..+||+||+|+||+++|.++|+.+-+. ++.+.... ... .-+...||.+
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l 96 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREV 96 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHH
Confidence 45788999999999999999999999997442 11111100 000 0134566766
Q ss_pred HHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 017204 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190 (375)
Q Consensus 111 F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~ 190 (375)
-+.+...-..+.-.|++||+.|++-.. ....|+..|+ ++.+++++|.+|+.++.
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALLTDA-------------AANALLKTLE-------------EPPENTWFFLACREPAR 150 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhh
Confidence 665522223566779999999976432 2245556666 67788899999999999
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHH---HHHHhcCCChhhHHH
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPGQSIDF 245 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~---la~lt~gf~gadl~~ 245 (375)
|.|-++. |+..+.. .|+.++..+.+... .+++.+. +++++.|-++..+++
T Consensus 151 lLpTIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 151 LLATLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ChHHHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999885 7776555 67777777666432 2455443 455666666555544
No 181
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.73 E-value=7.3e-08 Score=95.85 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcC
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 197 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR 197 (375)
+....+||+||++.+... ++..|++.++..+ .+.-.|.. .....++++|+|.|-.+ .++++|+.
T Consensus 142 ~A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld 207 (350)
T CHL00081 142 KANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 207 (350)
T ss_pred ecCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH
Confidence 334579999999866432 3344555555211 11112321 12345788888888655 69999987
Q ss_pred CCcceEEEe--CCC-HHHHHHhhhhhc
Q 017204 198 DGRMEKFYW--APT-REDRIGVCKGIF 221 (375)
Q Consensus 198 ~gRfd~~i~--~P~-~~~R~~Il~~~l 221 (375)
||...+. .|+ .+.+.+|++...
T Consensus 208 --Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 --RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred --HhCceeecCCCCChHHHHHHHHhhh
Confidence 8887766 455 699999988753
No 182
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.73 E-value=7.8e-09 Score=107.90 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=82.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe----ccCccc-----cCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELE-----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v----s~s~l~-----s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.|||+|+||||||.+|+++++......+.. ++..+. +...|+- .++. ..+......+++|||+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~------~~~~--G~l~~A~~Gil~iDEi 309 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF------TLEG--GALVLADNGVCCIDEF 309 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE------EecC--ccEEecCCCEEEEech
Confidence 699999999999999999999875432221 111121 1111110 0000 0111334579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-------------CCChhhcC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 197 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR 197 (375)
|.+... .+..|.+.+...+ .+.-.|.. .....+..||+|+|... .|+++++.
T Consensus 310 ~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 986432 2344445554211 01111221 12235678999999653 69999997
Q ss_pred CCcceEEEe---CCCHHHHHHhhhhhc
Q 017204 198 DGRMEKFYW---APTREDRIGVCKGIF 221 (375)
Q Consensus 198 ~gRfd~~i~---~P~~~~R~~Il~~~l 221 (375)
|||..+. .|+.+...+|++.++
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHH
Confidence 9998777 699999999987654
No 183
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=1.2e-08 Score=108.22 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=89.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccCCCCChHHHHHHHHHHH-----HHHHHhCCceeeeecccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----~~~~~~~~p~IL~iDEiD 132 (375)
-+|||.|+||||||++|+++++.+.. +|+.+..+...+..+|.- .+...+... ..++......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 37999999999999999999998764 477776543334344431 011111100 001112344699999998
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCCC---CCChhhcCCCcceEEEe--
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 206 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-v~l~~~~~~~~~~~V~VI~TTN~~~---~Ld~ALlR~gRfd~~i~-- 206 (375)
.+... ++..|++.++.... +.-.|.. .....+..||+|+|..+ .|+++|+. ||...+.
T Consensus 95 rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDDG-------------LSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCHH-------------HHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 65432 34556666652211 1111221 11234678899999765 79999986 8888666
Q ss_pred -CCCHHHHHHhhhhhc
Q 017204 207 -APTREDRIGVCKGIF 221 (375)
Q Consensus 207 -~P~~~~R~~Il~~~l 221 (375)
+|..++|.+|++..+
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 688899999987765
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.9e-07 Score=90.63 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-----------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-----------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.-+.|.++||+||.|+||+.+|+++|+.+-+. ++.+.... .++.+ +...||.+-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHH
Confidence 45788899999999999999999999986442 11121110 00111 234566655
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+......+.-.|++||++|.+... ....|+..++ ++..++++|.+|+.++.|
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMNES-------------ASNALLKTLE-------------EPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhC
Confidence 54422222445679999999976322 2245556666 667789999999999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCC-HHHHHHHhcCCChhhHHHH
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~-~~~la~lt~gf~gadl~~~ 246 (375)
-|-++. |+..+.. .|+.++..+.+... +++ ...+.+++.|-++..+++.
T Consensus 152 LpTI~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 152 LPTIVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hHHHHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHHh
Confidence 999875 7777666 78888887777543 222 3346667777666655543
No 185
>PRK06526 transposase; Provisional
Probab=98.71 E-value=2.9e-08 Score=94.78 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
+.+.+++|+||||||||+||.+|+.++ |..+..++..++.+..... ....+...+ -+-..+.+|+|||++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l------~~l~~~dlLIIDD~g 169 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAEL------VKLGRYPLLIVDEVG 169 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHH------HHhccCCEEEEcccc
Confidence 345689999999999999999999884 5555555555544221100 000011111 123457899999998
Q ss_pred cccC
Q 017204 133 AGAG 136 (375)
Q Consensus 133 ~i~~ 136 (375)
....
T Consensus 170 ~~~~ 173 (254)
T PRK06526 170 YIPF 173 (254)
T ss_pred cCCC
Confidence 6543
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=1.7e-07 Score=99.81 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=89.1
Q ss_pred cCCchhHHHHHHHH----HHHhhhhC--CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE-eccCc----------
Q 017204 32 LYIAPAFMDKLVVH----ITKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGE---------- 94 (375)
Q Consensus 32 ~~i~~~~~d~~~~~----~~k~~l~~--~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~-vs~s~---------- 94 (375)
-|-|..+.|.++.. .++.++.. .+..+.+.++|+||||||||++++.+|++++..++. .+...
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccccc
Confidence 35566655533222 23444432 234455679999999999999999999999876544 11110
Q ss_pred ---cccC--CCCChHHHHHHHHHHHHHHH------HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 017204 95 ---LESG--NAGEPAKLIRQRYREAADII------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163 (375)
Q Consensus 95 ---l~s~--~~Ge~~~~ir~~F~~A~~~~------~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~ 163 (375)
+.+. ..-.....++.++..|.... ......||||||||.+..+.. +.+..+|.-..
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~---------~~lq~lLr~~~---- 223 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT---------RALHEILRWKY---- 223 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH---------HHHHHHHHHHh----
Confidence 0000 01122344455555552111 124567999999998764321 22333331011
Q ss_pred cccCCCccccCCCCCceEEEEeCCC-C--------------CCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcC
Q 017204 164 CVQLPGMYNKEENPRVPIIVTGNDF-S--------------TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 164 ~v~l~~~~~~~~~~~V~VI~TTN~~-~--------------~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
....++++|+++|.- . .|.++++..-|+.++-+ +.+.....+.|+.++.
T Consensus 224 ----------~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 224 ----------VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred ----------hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHH
Confidence 123456666666531 1 13367874446655445 5566665555555543
No 187
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1e-07 Score=94.21 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=87.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc-------------------------eEEeccCccccCCCC-----ChHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAKL 106 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~-------------------------~i~vs~s~l~s~~~G-----e~~~~ 106 (375)
+.|..+||+||+|+|||++|+.+|+.+.+. |+.++...- ....| -+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 889999999999999999999999997541 222322110 00011 13566
Q ss_pred HHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 017204 107 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 186 (375)
Q Consensus 107 ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 186 (375)
||++.+.+...-..+...|++||++|.+... ..+.|+..+. +...++.+|.+|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 7887766622112455679999999876432 1234444555 2223467888999
Q ss_pred CCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhh
Q 017204 187 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG 219 (375)
Q Consensus 187 ~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~ 219 (375)
+++.+.+.+.+ |+..+.. .|+.++..+.+..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999876 6665555 6778877776643
No 188
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.69 E-value=2.1e-08 Score=107.26 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=85.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh-----------------------------------CCceEEeccCccccCCCCChH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 104 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el-----------------------------------g~~~i~vs~s~l~s~~~Ge~~ 104 (375)
-+|||+||||||||++|+++++.+ ..+|+.+..+...+..+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 479999999999999999999987 234555544433333344210
Q ss_pred HHHHHHHHHH-----HHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCC
Q 017204 105 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR 178 (375)
Q Consensus 105 ~~ir~~F~~A-----~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~ 178 (375)
+...+... ..++......|||||||+.+... ++..|++.++... .+.-.|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 01112334469999999876432 2345556665321 12222221 122367
Q ss_pred ceEEEEeCCC-CCCChhhcCCCcceEEEe---CCCHHHHHHhhhhhc
Q 017204 179 VPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCKGIF 221 (375)
Q Consensus 179 V~VI~TTN~~-~~Ld~ALlR~gRfd~~i~---~P~~~~R~~Il~~~l 221 (375)
+.+|+|+|.. ..|.++|+. ||+..+. +.+.+++.+|++..+
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8999999954 468889986 8887777 335677888876543
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.7e-07 Score=89.46 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHH---HHHHHH-hCCceeeeecc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND 130 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~---A~~~~~-~~~p~IL~iDE 130 (375)
.+.+++|+||||+|||+||-||++++ |..++.++.+++.+ .|+..|.. ...+.+ -....+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~--------~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS--------KLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 77899999999999999999999996 77888888888873 33444432 112233 45567999999
Q ss_pred cc
Q 017204 131 LD 132 (375)
Q Consensus 131 iD 132 (375)
|-
T Consensus 176 lG 177 (254)
T COG1484 176 IG 177 (254)
T ss_pred cc
Confidence 93
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.67 E-value=1.6e-08 Score=91.52 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=43.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCC-----CCChHHHHHHHHHHHHHHHHhCCceeeee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN-----AGEPAKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~-----~Ge~~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
+.+.+++|+||||||||+||.++++++ |..+..++.++|.+.. -+... ..+.. -....+|+|
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~----~~~~~------l~~~dlLil 114 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYE----ELLKR------LKRVDLLIL 114 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHC----HHHHH------HHTSSCEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchh----hhcCc------cccccEecc
Confidence 456799999999999999999999874 7778888877775331 11111 22222 234579999
Q ss_pred cccc
Q 017204 129 NDLD 132 (375)
Q Consensus 129 DEiD 132 (375)
||+-
T Consensus 115 DDlG 118 (178)
T PF01695_consen 115 DDLG 118 (178)
T ss_dssp ETCT
T ss_pred cccc
Confidence 9994
No 191
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.67 E-value=1.4e-07 Score=93.80 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC-------ceEEecc----CccccCCCCChHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPAKLIRQRYRE 113 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~-------~~i~vs~----s~l~s~~~Ge~~~~ir~~F~~ 113 (375)
..+.++|+||||||||+||+++++.++. +++.+++ +.+...-++--...+|..|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 4588999999999999999999999987 8888888 555444444434445555543
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=98.63 E-value=3.5e-08 Score=94.43 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
+.....++|+||||||||+||.+++.++ |..+..++..++...+... ....+...|... ...+.+|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 3445689999999999999999997763 6666666666554221100 000122233221 356789999999
Q ss_pred cccc
Q 017204 132 DAGA 135 (375)
Q Consensus 132 D~i~ 135 (375)
+...
T Consensus 174 g~~~ 177 (259)
T PRK09183 174 GYLP 177 (259)
T ss_pred ccCC
Confidence 7643
No 193
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.62 E-value=6.6e-08 Score=95.88 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=55.1
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhcC
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 197 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-~Ld~ALlR 197 (375)
+....+|||||++.+.. .+++.|++.++... .+.-.|.. .....++++|+|+|-.+ .|+++|+.
T Consensus 129 ~A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld 194 (337)
T TIGR02030 129 RANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 194 (337)
T ss_pred eccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh
Confidence 34567999999987532 23455666665321 12223331 12335788999988654 69999987
Q ss_pred CCcceEEEe--CCC-HHHHHHhhhhhc
Q 017204 198 DGRMEKFYW--APT-REDRIGVCKGIF 221 (375)
Q Consensus 198 ~gRfd~~i~--~P~-~~~R~~Il~~~l 221 (375)
||...+. .|. .++|.+|++...
T Consensus 195 --Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 --RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred --hcceEEECCCCCCHHHHHHHHHhhh
Confidence 7877766 344 488999987743
No 194
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=5.6e-08 Score=87.17 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 122 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----------~~~~~~~~ 122 (375)
..|..|||+|++||||+++|++|-+... .+|+.++++.+.. +..-..+|... ..++....
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeecc
Confidence 3446799999999999999999998753 5899999987642 22233455421 13445556
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcce
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 202 (375)
...|||||||.+... ++.-|+++++...-..+.+. .....+|-||+|||.. |.. ++..|+|.
T Consensus 94 ~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp TSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred ceEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HHH-HHHcCCCh
Confidence 789999999977543 34555566653221111111 1223578899999963 222 33445554
No 195
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.60 E-value=3.3e-06 Score=80.12 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC-ceEE--eccCc---------cccC----CCCCh-HHHHHHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGE---------LESG----NAGEP-AKLIRQRYREAADIIKKG 121 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~-~~i~--vs~s~---------l~s~----~~Ge~-~~~ir~~F~~A~~~~~~~ 121 (375)
+..++|+||+|+|||++++.+++++.. .+.. +.... +.+. ..+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 335889999999999999999999763 2221 11111 1111 11111 122333333333344577
Q ss_pred Cceeeeecccccc
Q 017204 122 KMCCLMINDLDAG 134 (375)
Q Consensus 122 ~p~IL~iDEiD~i 134 (375)
.+.||+|||++.+
T Consensus 123 ~~~vliiDe~~~l 135 (269)
T TIGR03015 123 KRALLVVDEAQNL 135 (269)
T ss_pred CCeEEEEECcccC
Confidence 8899999999875
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.57 E-value=1e-07 Score=84.83 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc-----------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~-----------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
.-+.|..+||+||+|+||+++|+++|+.+-.. ++.++...-. +. -....||.+.
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-~~--i~i~~ir~i~ 91 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-KS--IKIDQIREII 91 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-SS--BSHHHHHHHH
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-ch--hhHHHHHHHH
Confidence 34778899999999999999999999996432 2222222110 01 1245566666
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+......+..-|++|||+|.+.. ..+..|+..|+ ++..++.+|.+|+.++.|
T Consensus 92 ~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 92 EFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKI 145 (162)
T ss_dssp HHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS
T ss_pred HHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHC
Confidence 6541111245577999999997643 23355666666 566788999999999999
Q ss_pred ChhhcCCCcceEEE
Q 017204 192 YAPLIRDGRMEKFY 205 (375)
Q Consensus 192 d~ALlR~gRfd~~i 205 (375)
-|.++. |+-.+-
T Consensus 146 l~TI~S--Rc~~i~ 157 (162)
T PF13177_consen 146 LPTIRS--RCQVIR 157 (162)
T ss_dssp -HHHHT--TSEEEE
T ss_pred hHHHHh--hceEEe
Confidence 999986 665543
No 197
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.56 E-value=1.2e-07 Score=97.44 Aligned_cols=141 Identities=12% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccC-ccccCCCCCh-HHHH--HHHHHHHHHHHHhC---Cceeeee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLMI 128 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s-~l~s~~~Ge~-~~~i--r~~F~~A~~~~~~~---~p~IL~i 128 (375)
....+||+||||||||++|++++...+. +|...... ..-+..+|.. .+.. ...|.+. ..+ ...+||+
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfL 113 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFL 113 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEee
Confidence 3456999999999999999999998753 23322211 0111222321 1111 1122211 111 2349999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhcCCCcceEEE
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFY 205 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~---Ld~ALlR~gRfd~~i 205 (375)
|||.... ...+..|++.+..-. +..++. ....+..++++|||.... ..+|++- ||-..+
T Consensus 114 DEI~ras-------------p~~QsaLLeam~Er~-~t~g~~--~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri 175 (498)
T PRK13531 114 DEIWKAG-------------PAILNTLLTAINERR-FRNGAH--EEKIPMRLLVTASNELPEADSSLEALYD--RMLIRL 175 (498)
T ss_pred cccccCC-------------HHHHHHHHHHHHhCe-EecCCe--EEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEE
Confidence 9995322 233455666664211 111111 122233456666674321 2237774 786666
Q ss_pred e--CCC-HHHHHHhhhhh
Q 017204 206 W--APT-REDRIGVCKGI 220 (375)
Q Consensus 206 ~--~P~-~~~R~~Il~~~ 220 (375)
. .|+ .++-.+|+...
T Consensus 176 ~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCCchHHHHHHHHcc
Confidence 6 343 34556676553
No 198
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.53 E-value=3e-07 Score=76.11 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
|.||||||+|||++|+.+|+.+.-+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999887533
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=3.3e-07 Score=77.13 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=45.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh--------CCceEEeccCccccC--------------CCC-ChHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELESG--------------NAG-EPAKLIRQRYREA 114 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el--------g~~~i~vs~s~l~s~--------------~~G-e~~~~ir~~F~~A 114 (375)
..+.++++||||+|||++++.++..+ ..+++.++.+...+. ..+ .+.. .+++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSD---ELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HH---HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHH---HHHHHH
Confidence 34678999999999999999999997 667777665533210 111 1222 222222
Q ss_pred HHHHHhCCceeeeeccccccc
Q 017204 115 ADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEiD~i~ 135 (375)
.+.+......+|+|||+|.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC
Confidence 333456666799999999865
No 200
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.45 E-value=4.2e-07 Score=89.37 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CceEEeccCccccCCCCChHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 114 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg--~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A 114 (375)
|-...+|||+.||||||||.||-+||++|| .+|+.++++++.+.-+..++.+ .+.|++|
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~Rra 121 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRA 121 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHh
Confidence 555779999999999999999999999998 6999999999999888888754 5677776
No 201
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.43 E-value=2e-07 Score=93.26 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=28.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
+...+|+||.||||+|+|||+|.-+....+..
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 35678999999999999999999999998765
No 202
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.42 E-value=5.7e-07 Score=89.01 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=78.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p 123 (375)
....|||+|++||||+++|++|..... .+|+.++++.+...+ .-..+|+... ..+.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCC
Confidence 445699999999999999999987653 589999998664211 1122332110 11233456
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhc
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 196 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALl 196 (375)
..|||||||.+... ++..|+.++++.....+.+. .....++-||+|||.. ..+.+.|.
T Consensus 95 GtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 95 GTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 89999999876432 33445555553221111111 1223557889999863 23445555
Q ss_pred CCCcceE-EEeCCCHHHH
Q 017204 197 RDGRMEK-FYWAPTREDR 213 (375)
Q Consensus 197 R~gRfd~-~i~~P~~~~R 213 (375)
. |+.. .+.+|...+|
T Consensus 160 ~--rl~~~~i~lPpLReR 175 (329)
T TIGR02974 160 D--RLAFDVITLPPLRER 175 (329)
T ss_pred H--HhcchhcCCCchhhh
Confidence 3 5543 4447776666
No 203
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=3.2e-06 Score=88.38 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHhhhh--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 46 ITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 46 ~~k~~l~--~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.++.++. ..+....+.+||+||||||||++++.+|+++|..+..-.
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 3455554 234455678999999999999999999999999887743
No 204
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.41 E-value=3.9e-07 Score=90.48 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC--CceEEeccCccccCCCCChHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 114 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg--~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A 114 (375)
..+++||.||||||||.||-++|+++| .||+.++++++.|.-+-.+| .+.+.|++|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 568999999999999999999999998 79999999999998887776 455677765
No 205
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=1.2e-06 Score=75.36 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=45.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcccc----------------------CCCCChHHHHHHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 116 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s----------------------~~~Ge~~~~ir~~F~~A~~ 116 (375)
++|+||||+|||+++..++... +.+.+.++...... .+..... .......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPA--AARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCc--HHHHHHHHHH
Confidence 6899999999999999999886 34555544432211 1111111 1111111222
Q ss_pred HHHhCCceeeeecccccccCC
Q 017204 117 IIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~ 137 (375)
.+....|.+|+|||+..+...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHH
Confidence 336888999999999987543
No 206
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.37 E-value=9.9e-07 Score=87.16 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 122 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----------~~~~~~~~ 122 (375)
+.+..|||+|++||||+++|++|-.... .+|+.++++.+... ..-..+|+.. ...+....
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~ 100 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERAD 100 (326)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccC
Confidence 3445699999999999999999987653 58999999876311 1111222211 01123345
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhh
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPL 195 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~AL 195 (375)
...|||||||.+... ++..|+++++........+. .....++-||+||+.. ..+.+.|
T Consensus 101 gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL 165 (326)
T PRK11608 101 GGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADL 165 (326)
T ss_pred CCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHH
Confidence 678999999976533 33445555552111111111 1112357788888763 3455666
Q ss_pred cCCCcc-eEEEeCCCHHHH
Q 017204 196 IRDGRM-EKFYWAPTREDR 213 (375)
Q Consensus 196 lR~gRf-d~~i~~P~~~~R 213 (375)
.. || ...+.+|...+|
T Consensus 166 ~~--~l~~~~i~lPpLReR 182 (326)
T PRK11608 166 LD--RLAFDVVQLPPLRER 182 (326)
T ss_pred HH--hcCCCEEECCChhhh
Confidence 64 66 345667777666
No 207
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.34 E-value=2.4e-07 Score=89.28 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCce-E--EeccCccccCCCCChHHHHHHHHHHHHHHH-------HhCCceeeee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINP-I--MMSAGELESGNAGEPAKLIRQRYREAADII-------KKGKMCCLMI 128 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~-i--~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~-------~~~~p~IL~i 128 (375)
.+.+||.||+|||||++++..-..+.-.- + .+..+.. .+...+....+...+.- ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45699999999999999998777655332 2 1222211 11222222221110000 1345679999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCC---CCCChhhcCCCc
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDF---STLYAPLIRDGR 200 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-----~~~~V~VI~TTN~~---~~Ld~ALlR~gR 200 (375)
||+.--..+.. ++ +...++|.++++. .|.|+.. .-.+|.+|+|+|.. ..|++.|+| .
T Consensus 107 DDlN~p~~d~y-gt------q~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-GT------QPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-S--------HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-CC------cCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99975443332 12 3344677777772 3444432 23567888998853 247888887 5
Q ss_pred ceEEEe-CCCHHHHHHhhhhhc
Q 017204 201 MEKFYW-APTREDRIGVCKGIF 221 (375)
Q Consensus 201 fd~~i~-~P~~~~R~~Il~~~l 221 (375)
|-.... .|+.+....|...++
T Consensus 172 f~i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 172 FNILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp EEEEE----TCCHHHHHHHHHH
T ss_pred eEEEEecCCChHHHHHHHHHHH
Confidence 554444 799999888855544
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.34 E-value=5.2e-07 Score=94.71 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p 123 (375)
....|||+|++|||||++|++|.... +.+|+.++++.+...+ .-..+|+... ..+.....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL------LESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 44569999999999999999999885 4589999998764211 1112332110 01123346
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
..|||||||.+... ++..|++++++.......+. .....++-||+|||..
T Consensus 292 GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 292 GTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD 341 (534)
T ss_pred CeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC
Confidence 79999999976433 33455555552211111111 0112357788888764
No 209
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=3.3e-06 Score=71.85 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=44.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC--CceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg--~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
+.++|+||.|||||++++.+++++. -+++.++..+......-... +.+.|.+. ....+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence 5789999999999999999999876 66777776644321100000 11111111 1236789999999755
No 210
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.28 E-value=1.2e-06 Score=91.23 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 37 AFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 37 ~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|.|......++.-+.. .+.....++|.||||||||++++.++..+
T Consensus 190 d~~dv~Gq~~~~~al~~-aa~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI-AAAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhh-hccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 34454444444444332 23344679999999999999999998753
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.27 E-value=2.1e-06 Score=92.00 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHH---H-----HHHHhCCceeee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLM 127 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A---~-----~~~~~~~p~IL~ 127 (375)
...|||+|++||||+++|++|.+... .+|+.++++.+-. +..-..+|..+ . ..+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 44599999999999999999988754 5899999886631 11112333311 0 011233567899
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc------
Q 017204 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 201 (375)
Q Consensus 128 iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf------ 201 (375)
|||||.+... ++..|+.+++......+.+. ....-++-||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999876433 33455555552211111111 01112567899988642 223333444
Q ss_pred ---eEEEeCCCHHHH
Q 017204 202 ---EKFYWAPTREDR 213 (375)
Q Consensus 202 ---d~~i~~P~~~~R 213 (375)
...+.+|...+|
T Consensus 484 ~l~~~~i~lPpLreR 498 (638)
T PRK11388 484 ALHAFEITIPPLRMR 498 (638)
T ss_pred hhceeEEeCCChhhh
Confidence 334557877777
No 212
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.26 E-value=7.4e-06 Score=86.52 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=98.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC----------CceEEeccCccccC----------CCCCh------HHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELESG----------NAGEP------AKLIRQRYREA 114 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg----------~~~i~vs~s~l~s~----------~~Ge~------~~~ir~~F~~A 114 (375)
.+.+.|-||||||.+++.|-++|. ..++.|++-.|.+. +.|+. -..+...|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 677899999999999999999764 35667887766542 23332 12233333321
Q ss_pred HHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 017204 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 194 (375)
-....++||+|||+|.++.+.. ..|.|+.| |......+++||+.+|..+ |+.-
T Consensus 504 ---k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPEr 556 (767)
T KOG1514|consen 504 ---KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPER 556 (767)
T ss_pred ---CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHHH
Confidence 0156789999999999988753 34555555 5556778899999999876 3344
Q ss_pred hcC---CCcc--eEEEe-CCCHHHHHHhhhhhcCCC-CCCH---HHHHHHhcCCChh
Q 017204 195 LIR---DGRM--EKFYW-APTREDRIGVCKGIFRND-NVAD---DDIVKLVDTFPGQ 241 (375)
Q Consensus 195 LlR---~gRf--d~~i~-~P~~~~R~~Il~~~l~~~-~v~~---~~la~lt~gf~ga 241 (375)
++- ..|+ .+..+ +.+.++..+|+..-+... .++. +-+++.+..-+|.
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 331 1232 33334 679999999987777653 1211 1245555555553
No 213
>PHA00729 NTP-binding motif containing protein
Probab=98.23 E-value=2.3e-06 Score=80.20 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
..|+|+|+||||||+||.+|+.+++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999998643
No 214
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.22 E-value=3.2e-06 Score=88.68 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=85.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCcee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMCC 125 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p~I 125 (375)
..|||+|++||||+++|++|-... ..+|+.++++.+-..+ .-..+|..+. .++.......
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~------~e~elFG~~~~~~~~~~~~~~g~~e~a~~Gt 301 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV------VESELFGHAPGAYPNALEGKKGFFEQANGGS 301 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH------HHHHhcCCCCCCcCCcccCCCChhhhcCCCE
Confidence 349999999999999999987664 3578999998764211 1112232110 1122334678
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcCC
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIRD 198 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR~ 198 (375)
|||||||.+... ++.-|++++.+.+.....+. .....+|-||+||+.. ..+.+.|..
T Consensus 302 L~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~- 365 (520)
T PRK10820 302 VLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY- 365 (520)
T ss_pred EEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh-
Confidence 999999977443 23444555542211111111 1123456788888764 223344443
Q ss_pred CcceE-EEeCCCHHHHH-Hh---hhhhcC---------CCCCCHHHHHHHhcC-CCh
Q 017204 199 GRMEK-FYWAPTREDRI-GV---CKGIFR---------NDNVADDDIVKLVDT-FPG 240 (375)
Q Consensus 199 gRfd~-~i~~P~~~~R~-~I---l~~~l~---------~~~v~~~~la~lt~g-f~g 240 (375)
|+.. .+.+|...+|. +| +..++. ...++.+.+..+... |+|
T Consensus 366 -rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPG 421 (520)
T PRK10820 366 -RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPG 421 (520)
T ss_pred -hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCC
Confidence 4443 34467766664 44 112111 124566666666544 555
No 215
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=1.8e-05 Score=68.59 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=72.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCc---------eEEeccCccccCC-CCChHHHHHHHHHH--------HHHHHHhC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGIN---------PIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKG 121 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~---------~i~vs~s~l~s~~-~Ge~~~~ir~~F~~--------A~~~~~~~ 121 (375)
+-++|+|+||+|||++++.++..+... ++........... ...-...|...+.. ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 358999999999999999999885221 2223333222110 00011111111111 11233467
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
...+|+||-+|.+...... ...+.....|.+++. . ...+++-+|+|++... .+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~--------~----~~~~~~~liit~r~~~-~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP--------Q----ALPPGVKLIITSRPRA-FPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh--------h----ccCCCCeEEEEEcCCh-HHH-HHHhcCC
Confidence 7889999999998764331 111222333333333 0 1234556666665332 211 2221111
Q ss_pred eEEEe--CCCHHHHHHhhhhhcC
Q 017204 202 EKFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 202 d~~i~--~P~~~~R~~Il~~~l~ 222 (375)
...+. .-+.+++.++++.++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhh
Confidence 12333 3477778888877764
No 216
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.17 E-value=2.2e-06 Score=90.02 Aligned_cols=110 Identities=11% Similarity=0.173 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH-----------hCCceEEeccCccccCCCCChHHHHHHHHHHHH-----------
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYREAA----------- 115 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e-----------lg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~----------- 115 (375)
.+..|||+|++||||+++|++|-.. .+.+|+.++++.+-... .-..+|....
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCcccccc
Confidence 4456999999999999999999877 45689999998764221 1112232110
Q ss_pred -HHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 116 -DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 116 -~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
.++.......||||||+.+-.. ++.-|+.++++.....+.+. .....+|-||++||..
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD 373 (538)
T ss_pred CCchhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC
Confidence 1112334568999999876432 33445555553221111111 1112356789988764
No 217
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.16 E-value=1.5e-05 Score=73.07 Aligned_cols=83 Identities=13% Similarity=0.227 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC--------CCCC-----------hHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG--------NAGE-----------PAKLIRQRY 111 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~--------~~Ge-----------~~~~ir~~F 111 (375)
.|++....++++||||+|||++|..++.+. |...+.++..++... +.+. +.......+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 578888899999999999999999988653 556677766541100 0000 000111223
Q ss_pred HHHHHHHHhCCceeeeecccccccC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
....+++.+..+.+|+||-|.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333444666899999999998854
No 218
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6.8e-06 Score=89.79 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCc------cc---cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE------LE---SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~------l~---s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
+++.-+||.||.|+|||-||+++|..+ .-.++.++.++ +. .+|+|..+-- .+.+. ++...-+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Ltea----vrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEA----VKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHH----HhcCCce
Confidence 466778899999999999999999996 23677787775 22 2366655431 33333 3777789
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 189 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 189 (375)
||||||||+.... +...|++++|.-..- |+.-......+++||+|+|.-.
T Consensus 663 VVLfdeIEkAh~~-------------v~n~llq~lD~Grlt--Ds~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD-------------VLNILLQLLDRGRLT--DSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcCHH-------------HHHHHHHHHhcCccc--cCCCcEeeccceEEEEecccch
Confidence 9999999975432 334455566621100 1111123457889999999754
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.15 E-value=8.1e-06 Score=85.36 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p 123 (375)
.+..|||+|++||||+++|++|.... +.+|+.++++.+-+.. .-..+|+... ..+.....
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence 45569999999999999999999884 4689999988764211 1112232110 01123446
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhc
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 196 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------~Ld~ALl 196 (375)
..|||||||.+... ++.-|+.++++.....+.+. ......+-||+|||..- .+.+.|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 78999999987533 23444455542211111111 12234678999998742 2333333
Q ss_pred CCCcceE-EEeCCCHHHH-HHh
Q 017204 197 RDGRMEK-FYWAPTREDR-IGV 216 (375)
Q Consensus 197 R~gRfd~-~i~~P~~~~R-~~I 216 (375)
. |+.. .|.+|...+| .+|
T Consensus 348 ~--rl~~~~i~lPpLreR~eDI 367 (509)
T PRK05022 348 H--RLSVFPLSVPPLRERGDDV 367 (509)
T ss_pred h--cccccEeeCCCchhchhhH
Confidence 2 3333 3446776666 444
No 220
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.14 E-value=2.4e-05 Score=66.86 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 40 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 40 d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
-.++...++.++..+.-+.|..+-|+||||||||++++.||+.+
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34566777888877777888899999999999999999999994
No 221
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=6.7e-05 Score=71.66 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...+.|.|+|++|+|||+||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67788999999999999999999988
No 222
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.11 E-value=5e-06 Score=87.21 Aligned_cols=110 Identities=13% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHH-------H-----HHHHHhCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A-----ADIIKKGK 122 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~-------A-----~~~~~~~~ 122 (375)
....|||+|++||||+++|++|.... +.+|+.++++.+-..+ +-..+|+. | ..++....
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l------leseLFG~~~gaftga~~~~~~Gl~e~A~ 307 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL------LEAELFGYEEGAFTGARRGGRTGLIEAAH 307 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH------HHHHhcCCcccccccccccccccchhhcC
Confidence 34569999999999999999998764 4589999998764211 11123321 0 01112234
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
...|||||||.+... ++.-|+.++.+.....+.+. ......|-||+|||..
T Consensus 308 gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 308 RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCA 358 (526)
T ss_pred CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCC
Confidence 568999999876433 33445555552221111111 1112346788888764
No 223
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.10 E-value=9.2e-06 Score=78.46 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEeccCccc---cCCCCChHHHHHHHH
Q 017204 40 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELE---SGNAGEPAKLIRQRY 111 (375)
Q Consensus 40 d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs~s~l~---s~~~Ge~~~~ir~~F 111 (375)
..++++..|.|+..++-+.|..+=|||+|||||++.++.||+.+- .+++..--+.+- .+++...- .++-
T Consensus 91 ~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk---~eL~ 167 (344)
T KOG2170|consen 91 KQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK---EELK 167 (344)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH---HHHH
Confidence 355677778888888988999999999999999999999999852 122221111110 00111111 1122
Q ss_pred HHHHHHHHhCCceeeeecccccccC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.+..+.++.++.+|.+|||+|++-+
T Consensus 168 ~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 168 NRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHhcCCceEEechhhhcCH
Confidence 2233444788999999999998743
No 224
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.09 E-value=3.5e-06 Score=92.12 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=73.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHH-HH----HHHHHHHHHHhCCceeeeecccccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-RQ----RYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~i-r~----~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
..|||+|+||||||.+|+++++..... ..+++.... .+|-+.... +. -|..-...+......+++|||+|++
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~-~ytsG~~~s--~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRS-IYTSGKSSS--SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCcc-ccCCCCCCc--cccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC
Confidence 379999999999999999999854321 111111100 011111000 00 0000000112334569999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCC-------------CCCChhhcCCCc
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDF-------------STLYAPLIRDGR 200 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~-------------~~Ld~ALlR~gR 200 (375)
... .+..|++.+...+ .+.-.|. ......+.-||+|+|-. -.|+++|+. |
T Consensus 570 s~~-------------~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--R 633 (915)
T PTZ00111 570 HNE-------------SRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--R 633 (915)
T ss_pred CHH-------------HHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--h
Confidence 432 2344555554211 0111121 11234678899999974 257899996 9
Q ss_pred ceEEEe---CCCHHHHHHh
Q 017204 201 MEKFYW---APTREDRIGV 216 (375)
Q Consensus 201 fd~~i~---~P~~~~R~~I 216 (375)
||.++. .|+.+.=..|
T Consensus 634 FDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred hcEEEEecCCCChHHHHHH
Confidence 998877 4766553444
No 225
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.09 E-value=6.6e-06 Score=77.07 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=56.9
Q ss_pred cCCchhHHHHHHHHHHHhhh----hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-C----CceEEeccCccccCCCCC
Q 017204 32 LYIAPAFMDKLVVHITKNFM----SLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGE 102 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~k~~l----~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-g----~~~i~vs~s~l~s~~~Ge 102 (375)
-|-|..+.|.+.....-..+ ...+. | .+++.||||||||+-+.++|.++ | -.++.+++|+-.
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnm--P-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------ 90 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNM--P-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------ 90 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCC--C-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------
Confidence 35566666655443332222 33343 3 58899999999999999999995 3 134556666432
Q ss_pred hHHHHH---HHHHHHHHHHHhCCceeeeeccccccc
Q 017204 103 PAKLIR---QRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 103 ~~~~ir---~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
....+| +.|..-.=.+..++..||++||.|++.
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 122333 334332111114566799999999864
No 226
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.08 E-value=7.8e-06 Score=88.45 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC-----CCCC--------hHHHHHHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGE--------PAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~-----~~Ge--------~~~~ir~~F~~A~~~~~~~ 121 (375)
....|||+|++|||||++|++|.... +.+|+.+++..+... ..|. .... ...| ...
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~l-------e~a 469 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRF-------ELA 469 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHH-------Hhc
Confidence 34569999999999999999998864 468999888765321 1221 1000 1222 233
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
....|||||||.+... ++.-|+.++++..-..+.+. .....++-||+|||..
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRD 521 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCC
Confidence 4689999999876432 23444455542111111111 1123467789999764
No 227
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=3.7e-05 Score=78.17 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=106.6
Q ss_pred HHHHHhhhh-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccC--------------CCCC-
Q 017204 44 VHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESG--------------NAGE- 102 (375)
Q Consensus 44 ~~~~k~~l~-~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~--------------~~Ge- 102 (375)
..++++|.. ....+.+..+.+.|-||||||.+..-+-..... ..+++++.+|... ..+.
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 445566654 345677788999999999999998877666432 3355665543211 1111
Q ss_pred hHHHHHHHHHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 017204 103 PAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 181 (375)
.+......|.. ... ...|-||++||+|-++.+.. +.+-. | -.|..-...++++
T Consensus 239 ~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-l-------------Fewp~lp~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-L-------------FEWPKLPNSRIIL 292 (529)
T ss_pred hhHHHHHHHHH---HHhcccceEEEEechhhHHhhccc---------ceeee-e-------------hhcccCCcceeee
Confidence 12222222222 112 23488999999999985432 11111 1 1455667889999
Q ss_pred EEEeCCCCCCChhhcCCCcce------EEEe-CCCHHHHHHhhhhhcCCCCC------CHHHHHHHhcCCChh
Q 017204 182 IVTGNDFSTLYAPLIRDGRME------KFYW-APTREDRIGVCKGIFRNDNV------ADDDIVKLVDTFPGQ 241 (375)
Q Consensus 182 I~TTN~~~~Ld~ALlR~gRfd------~~i~-~P~~~~R~~Il~~~l~~~~v------~~~~la~lt~gf~ga 241 (375)
|+.+|..+.=|..|.|- +.| ...+ +.+.++..+|++.-+..... ..+-.|+.+.+-+|.
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 99999999888877642 222 2223 67999999999888765432 233477888888874
No 228
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.07 E-value=6.1e-06 Score=90.52 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=100.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCC-------hHHHHHHHHHH-HHHHHHhCCceeeeecccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRYRE-AADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge-------~~~~ir~~F~~-A~~~~~~~~p~IL~iDEiD 132 (375)
.+|+.||||+|||+.++++|.++|..++..+++...+++... +...|..-|.. ......+..--||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999999887665322 11222222210 0000012223399999999
Q ss_pred cccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhcCCCcceEEEeCCCH
Q 017204 133 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 210 (375)
Q Consensus 133 ~i~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~-ALlR~gRfd~~i~~P~~ 210 (375)
-+.+ .|+ .-..+.++. ....++||+|+|+.+.-.. ++.|.+ ++..+-.|+.
T Consensus 439 ~~~~~dRg-------~v~~l~~l~-------------------~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-------GVSKLSSLC-------------------KKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-------hHHHHHHHH-------------------HhccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 8766 222 112222111 1345789999999887666 455543 7776668999
Q ss_pred HHHHHhhhhhcCCC--CCCHHHHHHHhcCCChhhHH
Q 017204 211 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 244 (375)
Q Consensus 211 ~~R~~Il~~~l~~~--~v~~~~la~lt~gf~gadl~ 244 (375)
..+..-+..++..+ .++...+.+++... |+||.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 88776666666544 56666677766654 66653
No 229
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=1.3e-05 Score=77.82 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceE--------EeccCccccCC-CC----ChHHHHHHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGELESGN-AG----EPAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i--------~vs~s~l~s~~-~G----e~~~~ir~~F~~A~~~~~~~ 121 (375)
.-+.|..+||+||+|+||+.+|.++|..+-+.-- .-..+++.--. .| -+...+|.+-+.+...-..+
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 4477889999999999999999999999754210 00011110000 11 13455666666551111145
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
.-.|++||++|++... ....|+..+. ++..++++|..|+.++.|.|.++. |+
T Consensus 95 ~~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rc 146 (290)
T PRK05917 95 PYKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RS 146 (290)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cc
Confidence 5579999999976432 2245556666 667788999999999999999875 77
Q ss_pred eEEEeC
Q 017204 202 EKFYWA 207 (375)
Q Consensus 202 d~~i~~ 207 (375)
..+...
T Consensus 147 q~~~~~ 152 (290)
T PRK05917 147 LSIHIP 152 (290)
T ss_pred eEEEcc
Confidence 665553
No 230
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.04 E-value=4.8e-06 Score=71.73 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC---ceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~---~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
...-|||+|+|||||+++|++|....+. +|+.+++..+. .+.+ .......|||+|+|.+
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l-------~~a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELL-------EQAKGGTLYLKNIDRL 81 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHH-------HHCTTSEEEEECGCCS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHH-------HHcCCCEEEECChHHC
Confidence 3445999999999999999999998664 44445544322 1233 3447789999999977
Q ss_pred cC
Q 017204 135 AG 136 (375)
Q Consensus 135 ~~ 136 (375)
..
T Consensus 82 ~~ 83 (138)
T PF14532_consen 82 SP 83 (138)
T ss_dssp -H
T ss_pred CH
Confidence 54
No 231
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.02 E-value=2.9e-05 Score=78.41 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGK 122 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~ 122 (375)
..+.||++|++||||+++|++|.... +.+|+.++|+.+...-.. ..+|+... .+..+..
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Glfe~A~ 173 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGLFEQAN 173 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCchheecC
Confidence 34569999999999999999887553 558999999877533211 12333221 1122334
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcC-----
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR----- 197 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR----- 197 (375)
-..||+|||-.+- -..+.-|+.+++.-+...+.+ .......|.+|++||.. ++.+++.
T Consensus 174 GGtLfLDEI~~LP-------------~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~~--l~~~~~~g~dl~ 236 (403)
T COG1221 174 GGTLFLDEIHRLP-------------PEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTED--LEEAVLAGADLT 236 (403)
T ss_pred CCEEehhhhhhCC-------------HhHHHHHHHHHHcCceEecCC--CCCcCCCceeeeccccC--HHHHHHhhcchh
Confidence 5689999995432 234456677777443333333 12345678899998852 3333332
Q ss_pred CCcceEEEeCCCHHHH
Q 017204 198 DGRMEKFYWAPTREDR 213 (375)
Q Consensus 198 ~gRfd~~i~~P~~~~R 213 (375)
+-|....|.+|...+|
T Consensus 237 ~rl~~~~I~LPpLrER 252 (403)
T COG1221 237 RRLNILTITLPPLRER 252 (403)
T ss_pred hhhcCceecCCChhhc
Confidence 0144445557777776
No 232
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.01 E-value=6.5e-05 Score=70.86 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
...|-.++||+|||||.+++.+|+.+|..++..++++-. ....+.++|.=+ ....+-+.|||++.+...
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 346778999999999999999999999999999998765 245566666443 223578999999876432
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCcceEEEe-CCCHHH
Q 017204 138 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 138 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~-~P~~~~ 212 (375)
.-++..+.+......+..+...+.+.+.... -.+..-+.+|.| .-..||+.|+.-.| -+-. .||...
T Consensus 100 -----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~-l~~~~~iFiT~np~y~gr~~LP~nLk~lFR--pvam~~PD~~~ 171 (231)
T PF12774_consen 100 -----VLSVISQQIQSIQDALRAKQKSFTLEGQEIK-LNPNCGIFITMNPGYAGRSELPENLKALFR--PVAMMVPDLSL 171 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE---TT-EEEEEE-B-CCCC--S-HHHCTTEE--EEE--S--HHH
T ss_pred -----HHHHHHHHHHHHHHhhcccccccccCCCEEE-EccceeEEEeeccccCCcccCCHhHHHHhh--eeEEeCCCHHH
Confidence 1223333344333333343334444333111 123445666777 34678888875333 2222 788877
Q ss_pred HHHhh
Q 017204 213 RIGVC 217 (375)
Q Consensus 213 R~~Il 217 (375)
-.+++
T Consensus 172 I~ei~ 176 (231)
T PF12774_consen 172 IAEIL 176 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 233
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.99 E-value=8.4e-06 Score=84.20 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 96 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~ 96 (375)
...|+|+++++.. |.+. .+...+|.+ .+.+..|||.|.+||||-++|++|-+.. +-+|+.++|+-+-
T Consensus 239 ~a~y~f~~Iig~S---~~m~--~~~~~akr~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGES---PAML--RVLELAKRI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCC---HHHH--HHHHHHHhh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457778877743 3332 234445553 4677789999999999999999998875 4589999988652
Q ss_pred -----cCCC--------CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 017204 97 -----SGNA--------GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163 (375)
Q Consensus 97 -----s~~~--------Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~ 163 (375)
|..+ |....-=..+|+.| ...=||+|||-.+- ..++.-|+.+|....
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A-------~gGTLFLDEIgemp-------------l~LQaKLLRVLQEke 368 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELA-------NGGTLFLDEIGEMP-------------LPLQAKLLRVLQEKE 368 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeec-------cCCeEEehhhccCC-------------HHHHHHHHHHHhhce
Confidence 1111 11100001233333 23469999994331 345556666766444
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcce
Q 017204 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202 (375)
Q Consensus 164 ~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 202 (375)
-..+.+. ....-.|-||+|||+. + ..++..|+|-
T Consensus 369 i~rvG~t--~~~~vDVRIIAATN~n--L-~~~i~~G~FR 402 (560)
T COG3829 369 IERVGGT--KPIPVDVRIIAATNRN--L-EKMIAEGTFR 402 (560)
T ss_pred EEecCCC--CceeeEEEEEeccCcC--H-HHHHhcCcch
Confidence 4443333 1223567899999984 1 2234455554
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.99 E-value=0.00011 Score=66.98 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
....++|+||.|+|||+|++.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 45679999999999999999999987
No 235
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00014 Score=71.13 Aligned_cols=130 Identities=8% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc-------------eEEeccCccccCCCCChHHHHHHHHHHHHHHH-HhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGK 122 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~-------------~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~-~~~~ 122 (375)
+.+...||+|+.|.||+.+|+.+++.+-+. ++.+... .+. -+...|+.+-+...-.. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 567789999999999999999999997331 1112100 000 11234555555441000 0146
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcce
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd 202 (375)
..|++||+.|++.. .....|+..+. ++.+.+++|.+|+.++.|-+.++. |+.
T Consensus 91 ~KvvII~~~e~m~~-------------~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~ 142 (299)
T PRK07132 91 KKILIIKNIEKTSN-------------SLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQ 142 (299)
T ss_pred ceEEEEecccccCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeE
Confidence 78999999976521 12235555666 556677888888888999998875 666
Q ss_pred EEEe-CCCHHHHHHhhhh
Q 017204 203 KFYW-APTREDRIGVCKG 219 (375)
Q Consensus 203 ~~i~-~P~~~~R~~Il~~ 219 (375)
.+-. .|+.++..+.+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 6555 6677777766654
No 236
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.99 E-value=5.6e-05 Score=76.19 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEecc--------C------------------------ccccCCCCChHH--
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--------G------------------------ELESGNAGEPAK-- 105 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~--------s------------------------~l~s~~~Ge~~~-- 105 (375)
.|+|+-|++|||||+++|+||.-|.---+...+ + .+.+-=.|.++.
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 589999999999999999999987422211111 0 011111222222
Q ss_pred --------HHHH---HHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCC-ccccCCCcccc
Q 017204 106 --------LIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TCVQLPGMYNK 173 (375)
Q Consensus 106 --------~ir~---~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~-~~v~l~~~~~~ 173 (375)
.++. .|.- .++.+....||+|||+..+.. +++. .|++.+..- ..|+..|...
T Consensus 119 vGslDi~ka~~~g~~af~P--GlLa~AnRGIlYvDEvnlL~d------------~lvd-~LLd~aaeG~n~vereGisi- 182 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQP--GLLARANRGILYVDEVNLLDD------------HLVD-ALLDVAAEGVNDVEREGISI- 182 (423)
T ss_pred ccccCHHHHHhcCccccCC--cchhhccCCEEEEeccccccH------------HHHH-HHHHHHHhCCceeeeCceee-
Confidence 1111 1110 233344557999999964422 3333 444554422 3455555421
Q ss_pred CCCCCceEEEEeCCC-CCCChhhcCCCcceEEEe---CCCHHHHHHhhhhhcCC
Q 017204 174 EENPRVPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRN 223 (375)
Q Consensus 174 ~~~~~V~VI~TTN~~-~~Ld~ALlR~gRfd~~i~---~P~~~~R~~Il~~~l~~ 223 (375)
....++++|+|+|-. ..|-|.|+= ||...+. +.+.++|.+|++.-..-
T Consensus 183 ~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 183 RHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 233578999999975 457788874 7776666 67889999997765543
No 237
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.98 E-value=1.2e-05 Score=83.82 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.....++|.||||||||++++.++..+
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 344679999999999999999998764
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.98 E-value=6.4e-06 Score=68.55 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
.|+|.||||+|||++|+.+|+.+|+.++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 37899999999999999999999988776654
No 239
>PHA02774 E1; Provisional
Probab=97.97 E-value=4.6e-05 Score=79.91 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=68.7
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE-eccCccccCCCCChHHHHHHHHHHHHHHHHhC
Q 017204 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 43 ~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~-vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~ 121 (375)
.....|+++ .+++.-..++||||||||||++|-+|++.++-..+. ++... .-| +..+ .
T Consensus 420 fl~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s--~Fw-----------Lqpl------~ 478 (613)
T PHA02774 420 FLTALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS--HFW-----------LQPL------A 478 (613)
T ss_pred HHHHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc--ccc-----------cchh------c
Confidence 345566666 354434689999999999999999999998755444 44211 011 1111 1
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeCCCCCCChh
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGNDFSTLYAP 194 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~-~~~~~~V~VI~TTN~~~~Ld~A 194 (375)
.-.|++|||+-. . ...-+...|.++||.- .|.++.... ......-++|+|||---.-++.
T Consensus 479 d~ki~vlDD~t~---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~ 539 (613)
T PHA02774 479 DAKIALLDDATH---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAEDR 539 (613)
T ss_pred cCCEEEEecCcc---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccchh
Confidence 225999999910 0 1234455677888843 333332211 1223445899999944333333
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.97 E-value=9.2e-05 Score=66.15 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
+|++||||||||+++..++.+. |...+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999887753 556655553
No 241
>PRK08118 topology modulation protein; Reviewed
Probab=97.95 E-value=2.3e-05 Score=70.07 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=33.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 104 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~ 104 (375)
-|++.||||+|||++|+.|++.++++++.++.--....|...+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~ 46 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPK 46 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCH
Confidence 58999999999999999999999999888764322333444443
No 242
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=9.1e-05 Score=76.63 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=42.4
Q ss_pred hhHHHHHHHHH-----HHhhhh-----CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC
Q 017204 36 PAFMDKLVVHI-----TKNFMS-----LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93 (375)
Q Consensus 36 ~~~~d~~~~~~-----~k~~l~-----~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s 93 (375)
|+-.+.+.+|- ++.||+ .+++ ..+.+||+||+|||||+.++.+++++|+.++.-+.+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKL-GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCC-CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 33345566653 455665 4444 346899999999999999999999999998886533
No 243
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=0.0002 Score=81.93 Aligned_cols=32 Identities=25% Similarity=0.587 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
+....+.+.|+||+|+|||+||+++++.+...
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 34456789999999999999999999987544
No 244
>PRK15115 response regulator GlrR; Provisional
Probab=97.95 E-value=1.4e-05 Score=81.50 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=77.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 124 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p~ 124 (375)
...++|+|++|||||++|+++.... +.+|+.+++..+...+ .-..+|..+. ..+......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3468999999999999999998875 4689999988764211 1112332210 011234457
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc---
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 201 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf--- 201 (375)
.|||||||.+... .+..|+..+++.....+.+. .....++-+|+||+.. ++.. +..|+|
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~~-~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPKA-MARGEFRED 292 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHHH-HHcCCccHH
Confidence 8999999976543 23445555542211111111 1122467899999863 4433 344666
Q ss_pred ------eEEEeCCCHHHHH
Q 017204 202 ------EKFYWAPTREDRI 214 (375)
Q Consensus 202 ------d~~i~~P~~~~R~ 214 (375)
...+.+|...+|.
T Consensus 293 l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHhhceeeecCCChHhcc
Confidence 3344467777773
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00012 Score=71.36 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CceEEeccCccccC---------CCC---ChH
Q 017204 46 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG---------NAG---EPA 104 (375)
Q Consensus 46 ~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---------~~~i~vs~s~l~s~---------~~G---e~~ 104 (375)
.....+..|....+-++||+|++|.|||++++..+.... ++++.+..+.--+. ..| .+.
T Consensus 48 ~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 48 RLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred HHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 344455556555556899999999999999999987742 24444433211100 001 111
Q ss_pred HHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 105 KLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 105 ~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
..+......+..+++...+.+|+|||+-.+.
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 2233444555577789999999999997753
No 246
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.93 E-value=2.9e-05 Score=72.10 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
.|++....++++||||+|||++|..+|.+. +...+.++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 588888899999999999999999998754 6667777665
No 247
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.93 E-value=0.00011 Score=71.32 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=37.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESG 98 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~ 98 (375)
|--..+.+|+.|+||||||.+|-.+++.+|- +|..++++++.+-
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~Sl 107 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSL 107 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeee
Confidence 4346789999999999999999999999985 7888999988654
No 248
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=8e-05 Score=66.16 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+.+.-++++|+||+|||+++..|+..+.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35567899999999999999999998863
No 249
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.90 E-value=1.3e-05 Score=70.49 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.+|..|+|+||||||||++|+.+|+.+|..++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4577899999999999999999999999888753
No 250
>PHA02624 large T antigen; Provisional
Probab=97.90 E-value=0.00011 Score=77.61 Aligned_cols=150 Identities=14% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC
Q 017204 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122 (375)
Q Consensus 43 ~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~ 122 (375)
...++|.++ .|++..+.+|||||||||||+++.+|++.+|-..+.++++.-. .-|... -...
T Consensus 417 ~~~~lk~~l--~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k------------s~FwL~----pl~D 478 (647)
T PHA02624 417 IYDILKLIV--ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK------------LNFELG----CAID 478 (647)
T ss_pred HHHHHHHHH--hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch------------hHHHhh----hhhh
Confidence 334455554 4666677999999999999999999999996556667655322 123222 2233
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
--+.+|||+-.-+-....-......+.+ .-|.+.||.-..|.++.--.. ....--+.|+|||.- .||.-+.- ||
T Consensus 479 ~~~~l~dD~t~~~~~~~~Lp~G~~~dNl--~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf 553 (647)
T PHA02624 479 QFMVVFEDVKGQPADNKDLPSGQGMNNL--DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RF 553 (647)
T ss_pred ceEEEeeeccccccccccCCcccccchh--hHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HH
Confidence 3588999985333211100000000000 235566663333333322110 111123789999974 47776654 78
Q ss_pred eEEEe-CCCHHHHHH
Q 017204 202 EKFYW-APTREDRIG 215 (375)
Q Consensus 202 d~~i~-~P~~~~R~~ 215 (375)
-+.+. .|..--+..
T Consensus 554 ~~~~~F~~k~~l~~s 568 (647)
T PHA02624 554 AKVLDFKPKPYLKKS 568 (647)
T ss_pred HHhccccccHHHHHH
Confidence 77777 565554443
No 251
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.89 E-value=9.3e-05 Score=73.02 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~F~~A~~~~ 118 (375)
.|++..+.++++||||||||+||..++.+. |-..+.++..+-.+. ..|-. .....+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 588888899999999999999988776653 455555554332110 00100 001222334444455
Q ss_pred HhCCceeeeecccccccCC
Q 017204 119 KKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~ 137 (375)
+...+.+|+||-+-++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 7888999999999988764
No 252
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.88 E-value=3e-05 Score=78.14 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=51.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCC-----c-eEEeccCc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI 117 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~-----~-~i~vs~s~---------------l~s~~~Ge~~~~ir---~~F~~A~~~ 117 (375)
.||+||||+|||+|++.|++.... . ++.+.... +.+.+-..++..++ ..+..|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998744 2 22333221 34445555555555 444555444
Q ss_pred HHhCCceeeeecccccccC
Q 017204 118 IKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 118 ~~~~~p~IL~iDEiD~i~~ 136 (375)
...++.+|||||||..++.
T Consensus 252 ~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 252 VEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHcCCCEEEEEEChHHHHH
Confidence 4578899999999987743
No 253
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.88 E-value=2.2e-05 Score=76.47 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=76.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCc-e-----EEeccCccccCCCCChHHHHHHHHHHHHH--HHH-hCCceeeeeccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGIN-P-----IMMSAGELESGNAGEPAKLIRQRYREAAD--IIK-KGKMCCLMINDL 131 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~-~-----i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~--~~~-~~~p~IL~iDEi 131 (375)
.+|+|||||||||+...+.|..+-.+ - ..++++.-. -.+ ..+.--..|.-+.. +.. ...+..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid-~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCc-chHHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999987553 1 112222111 111 11222234444410 000 236889999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeC-CCH
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR 210 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~-P~~ 210 (375)
|++...-. ..|..+.. ....++-++..+|.+..+.||+.. ||.++-+- -+.
T Consensus 141 DaMT~~AQ-------------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRDAQ-------------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM 192 (360)
T ss_pred hHhhHHHH-------------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence 98754321 11211111 223455677889999999999874 77776663 233
Q ss_pred HHHHHhhhhhcCCC
Q 017204 211 EDRIGVCKGIFRND 224 (375)
Q Consensus 211 ~~R~~Il~~~l~~~ 224 (375)
+.-..++..+...+
T Consensus 193 ~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 193 AQQTERQSHIRESE 206 (360)
T ss_pred hhhhhHHHHHHhcc
Confidence 44444455555443
No 254
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.87 E-value=0.00012 Score=72.40 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccccC----CCCCh-H-------HHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP-A-------KLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s~----~~Ge~-~-------~~ir~~F~~A~~~~ 118 (375)
.|++..+.++++||||||||+||..++.+ .|...+.++..+-.+. ..|-. . ....+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 47888889999999999999999987755 3556666655321110 00100 0 01122333444455
Q ss_pred HhCCceeeeecccccccCC
Q 017204 119 KKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~ 137 (375)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 7888999999999988764
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.85 E-value=1.8e-05 Score=67.57 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=26.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
|++.||||+|||++|+.+++.++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999994 34444444
No 256
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.85 E-value=4e-06 Score=75.26 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el 83 (375)
++|+|+||+|||++++.+.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999999997
No 257
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.85 E-value=1.8e-05 Score=78.48 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=69.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~-----l---------~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
...|||.|.||||||.|.+.+++-..... .+++.. | ...|.-+.+.+ -.....
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal------------vlad~G 123 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL------------VLADGG 123 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH------------HHCTTS
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch------------hcccCc
Confidence 45899999999999999998865543333 222221 2 12222222222 233568
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-------------C
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------T 190 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~ 190 (375)
|++|||+|++-... ...|.+.++..+ .+.-.|. ...-..+.-|++++|-.. .
T Consensus 124 iccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 124 ICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeeecccccccchH-------------HHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 99999999875421 134444444211 1111121 112245668999999665 5
Q ss_pred CChhhcCCCcceEEEe---CCCHHHHHHhhhhhc
Q 017204 191 LYAPLIRDGRMEKFYW---APTREDRIGVCKGIF 221 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~---~P~~~~R~~Il~~~l 221 (375)
++++|+. |||.++. .|+.+.-..|.+.++
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHH
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEE
Confidence 8889996 9999887 577655555544333
No 258
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=7.8e-05 Score=69.81 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=54.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCcccc--------------CCC---------------C
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES--------------GNA---------------G 101 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s--------------~~~---------------G 101 (375)
.|++.+..++++||||+|||+++.+++.+ .|...+.++..+-.. ++. .
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 58888899999999999999999999765 255555544321110 000 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
........++..+.+.+....|.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112234566666666677789999999998663
No 259
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00034 Score=68.15 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE----------------eccCccccC-CCCC--hHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGELESG-NAGE--PAKLIRQRYREAA 115 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~----------------vs~s~l~s~-~~Ge--~~~~ir~~F~~A~ 115 (375)
.-+.|..+||+|| +||+.+|+++|+.+-+.--. -+.+++.-- -.|. ....||++-+.+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3477889999996 68999999999986442100 011111100 0121 2456777666552
Q ss_pred HHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 017204 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 195 (375)
Q Consensus 116 ~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~AL 195 (375)
..-..+...|++||++|.+... ....|+..+. ++..++++|.+|+.++.|-|-+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred hCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHH
Confidence 2112455579999999976432 1234555555 5667789999999999999998
Q ss_pred cCCCcceEEEeCCCHHHHHHhhh
Q 017204 196 IRDGRMEKFYWAPTREDRIGVCK 218 (375)
Q Consensus 196 lR~gRfd~~i~~P~~~~R~~Il~ 218 (375)
+. |+..+...|+.+...+++.
T Consensus 152 ~S--Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 152 KS--RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred HH--cceeeeCCCcHHHHHHHHH
Confidence 75 7776666566555555554
No 260
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.81 E-value=1.9e-05 Score=76.18 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC--CceEEeccCccccCCCCChHHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 115 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg--~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~ 115 (375)
..+++||.||||||||.||-+|++++| .+|..+.+|++.|.-+-.++-+ -+-|++|.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 457999999999999999999999997 5899999999998877776644 46677763
No 261
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.80 E-value=3.2e-05 Score=79.55 Aligned_cols=133 Identities=13% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p 123 (375)
....+|++|++|||||++|+++..... .+|+.++++.+... ..-..+|+... ..+.....
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 445699999999999999999998864 58999999876321 11222333110 00123345
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhc
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 196 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALl 196 (375)
..|||||||.+... ++..|+.++++.......+. ......+-||+||+.. ..+.+.|.
T Consensus 234 Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 234 GTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 68999999976543 23445555553221111111 0112456788888763 23445555
Q ss_pred CCCcce-EEEeCCCHHHH
Q 017204 197 RDGRME-KFYWAPTREDR 213 (375)
Q Consensus 197 R~gRfd-~~i~~P~~~~R 213 (375)
. |+. ..+.+|...+|
T Consensus 299 ~--~l~~~~i~~PpLreR 314 (469)
T PRK10923 299 H--RLNVIRVHLPPLRER 314 (469)
T ss_pred H--HhcceeecCCCcccc
Confidence 3 553 44556665555
No 262
>PRK07261 topology modulation protein; Provisional
Probab=97.80 E-value=5.8e-05 Score=67.66 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
-|++.|+||+|||+||+.++..++.+.+..+.-.....|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 3789999999999999999999999888766544444444443
No 263
>PRK13947 shikimate kinase; Provisional
Probab=97.78 E-value=8e-05 Score=65.91 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=32.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
.|+|.|+||||||++|+.+|+.+|++|+... .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999987754 3344444544
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.77 E-value=9.7e-05 Score=76.13 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCC------CCC--------hHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAAD 116 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~------~Ge--------~~~~ir~~F~~A~~ 116 (375)
.|+.+...+||+||||+|||+|+..+|... +...++++..+-.+.. .|. .+..+..+++
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~---- 150 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILA---- 150 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHH----
Confidence 478888899999999999999999998875 5677777765432110 111 0111223333
Q ss_pred HHHhCCceeeeecccccccCC
Q 017204 117 IIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~ 137 (375)
.+++..|.+|+||+|-.+...
T Consensus 151 ~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHHhhCCCEEEEechhhhccc
Confidence 336778999999999887543
No 265
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.77 E-value=9.4e-05 Score=70.54 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc------eEEeccC---c-------c-----ccCCCCChHHHH---HHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLI---RQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~------~i~vs~s---~-------l-----~s~~~Ge~~~~i---r~~F~ 112 (375)
....-++|.||+|||||+|++.+++.+... ++.+... + + .+.+-..+...+ .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 345568999999999999999999987653 2232222 1 1 222222333322 24444
Q ss_pred HHHHHHHhCCceeeeeccccccc
Q 017204 113 EAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
.|......++..+|||||+..+.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 45333346789999999998763
No 266
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.77 E-value=0.00026 Score=67.95 Aligned_cols=167 Identities=17% Similarity=0.275 Sum_probs=99.3
Q ss_pred cCCchhHHHHHHHHHHHhhhhCCCC--CCCcEEEEEcCCCchHHHHHHHHHHHh-C--CceEEe------ccC-------
Q 017204 32 LYIAPAFMDKLVVHITKNFMSLPNI--KVPLILGIWGGKGQGKSFQCELVFAKM-G--INPIMM------SAG------- 93 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~k~~l~~~~~--~~p~glLL~GPPGtGKT~LA~aIA~el-g--~~~i~v------s~s------- 93 (375)
.|.|..+......+...+.++.... ..| .+|+|||+|+||-+.+-++-+++ | +.-+.+ +++
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEis 84 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIS 84 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEE
Confidence 4566666554444455566543222 123 69999999999999999999885 2 211111 111
Q ss_pred ccccC--------CCCChHH-HHHHHHHHHHHHHH-----hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 017204 94 ELESG--------NAGEPAK-LIRQRYREAADIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 159 (375)
Q Consensus 94 ~l~s~--------~~Ge~~~-~ir~~F~~A~~~~~-----~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~ll 159 (375)
.+.|. ..|...+ .|.++.++.+..-. +..--|++|.|.|++..+-. ..|..-+
T Consensus 85 tvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ-------------~aLRRTM 151 (351)
T KOG2035|consen 85 TVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ-------------HALRRTM 151 (351)
T ss_pred EecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH-------------HHHHHHH
Confidence 11111 2344333 35555555421111 22235899999998865421 2221111
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc-eEEEeCCCHHHHHHhhhhhcCCCCCC
Q 017204 160 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM-EKFYWAPTREDRIGVCKGIFRNDNVA 227 (375)
Q Consensus 160 d~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf-d~~i~~P~~~~R~~Il~~~l~~~~v~ 227 (375)
. .....+-+|..+|..+.|=+|+.. |+ -..+..|+.++-..++...+.++++.
T Consensus 152 E-------------kYs~~~RlIl~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 152 E-------------KYSSNCRLILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred H-------------HHhcCceEEEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 1 233456789999999999999875 43 23333799999999999998887554
No 267
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.77 E-value=6.7e-05 Score=76.76 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 124 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p~ 124 (375)
...+|++|++||||+++|+++.... +.+|+.+++..+...+ .-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 3469999999999999999998774 4689999988764211 1112222110 011233457
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
+|||||||.+... ++..|++++++.......+. .....++-||+|||..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRD 288 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCC
Confidence 9999999976543 23445555553211111111 1122457899999864
No 268
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00019 Score=68.72 Aligned_cols=122 Identities=7% Similarity=-0.067 Sum_probs=76.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE--------------eccCccccCC-CC--ChHHHHHHHHHHHHHHH-
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--------------MSAGELESGN-AG--EPAKLIRQRYREAADII- 118 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~--------------vs~s~l~s~~-~G--e~~~~ir~~F~~A~~~~- 118 (375)
.+|..+||+||+|+||..+|.++|+.+-+.--. -+.+++.--+ .+ -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467899999999999999999999986432100 0011111000 01 12344555544431101
Q ss_pred HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCC
Q 017204 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 198 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~ 198 (375)
..+.-.|++|+++|.+... ....|+..+. ++..++++|.+|+.++.|.|-++.
T Consensus 85 e~~~~KV~II~~ae~m~~~-------------AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ-------------SANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCHH-------------HHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 1234579999999875322 2234555555 677889999999999999999985
Q ss_pred CcceEEEe
Q 017204 199 GRMEKFYW 206 (375)
Q Consensus 199 gRfd~~i~ 206 (375)
|+.++..
T Consensus 138 -RCq~~~~ 144 (261)
T PRK05818 138 -RCVQYVV 144 (261)
T ss_pred -heeeeec
Confidence 7766444
No 269
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.74 E-value=4.7e-05 Score=77.77 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=74.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 124 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----------~~~~~~~~p~ 124 (375)
...++|+|++||||+++|+++..... .+|+.++++.+.+. ..-..+|... ...+......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 45689999999999999999987754 57899998876321 1111223211 0111234567
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhcC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 197 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALlR 197 (375)
.|||||||.+... ++..|+.++.......+.+. .....++-||+||+.. ..+.+.|..
T Consensus 236 tl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 236 TLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 8999999876533 23445555542111011111 1112357788888765 233444432
Q ss_pred CCcce-EEEeCCCHHHHH
Q 017204 198 DGRME-KFYWAPTREDRI 214 (375)
Q Consensus 198 ~gRfd-~~i~~P~~~~R~ 214 (375)
|+. ..+.+|...+|.
T Consensus 301 --~l~~~~i~lPpLr~R~ 316 (445)
T TIGR02915 301 --RIAEISITIPPLRSRD 316 (445)
T ss_pred --HhccceecCCCchhch
Confidence 333 234467776664
No 270
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.73 E-value=3.3e-05 Score=82.50 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=58.5
Q ss_pred cccCCchhHHHHHHHH-HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc----eEEeccCcc------ccC
Q 017204 30 DGLYIAPAFMDKLVVH-ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGEL------ESG 98 (375)
Q Consensus 30 ~~~~i~~~~~d~~~~~-~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~----~i~vs~s~l------~s~ 98 (375)
.+..+|+.+.+.++-| .++..+.. .+..++.++|+||||||||++|+++++.++.+ ++.+..+.+ ...
T Consensus 8 ~~~~~~~~~~~~viG~~~a~~~l~~-a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v 86 (608)
T TIGR00764 8 EEIPVPERLIDQVIGQEEAVEIIKK-AAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEV 86 (608)
T ss_pred cccCcchhhHhhccCHHHHHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHH
Confidence 4456677776665332 23333321 11223489999999999999999999999764 223333332 334
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
+.|.+++.++..|..| ++..|+
T Consensus 87 ~~~~g~~~~~~~~~~~----~~~~~~ 108 (608)
T TIGR00764 87 PAGEGREIVEDYKKKA----FKQPSS 108 (608)
T ss_pred HHhhchHHHHHHHHHh----hcccch
Confidence 6788899999999988 544443
No 271
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.72 E-value=0.00023 Score=65.41 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.++|.||+|+|||++.+.|+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999999854
No 272
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.71 E-value=7.4e-05 Score=66.87 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
.+.|+|.||||+|||++|+.++++++..++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 4579999999999999999999998877665443
No 273
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.68 E-value=0.00023 Score=70.33 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=26.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..+|+|+.|||+-|+|||+|.-.....+-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457899999999999999999999988654
No 274
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.00031 Score=64.84 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
.|+.....++++|+||+|||++|..+|.+. |.+.+.++.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 478888889999999999999999999775 446666654
No 275
>PRK06762 hypothetical protein; Provisional
Probab=97.66 E-value=0.0001 Score=65.10 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
|+.++|.|+||+|||++|+.+++.++.+.+.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997666666655544
No 276
>PRK13695 putative NTPase; Provisional
Probab=97.65 E-value=0.00027 Score=63.05 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988775
No 277
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.65 E-value=0.00019 Score=62.11 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
++|.|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876554
No 278
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.64 E-value=5.7e-05 Score=70.71 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
.|.-+|+||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 367799999999999999999973
No 279
>PRK03839 putative kinase; Provisional
Probab=97.64 E-value=4.6e-05 Score=68.34 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=28.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.|+||+|||++++.+|+.++++++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887654
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.63 E-value=0.00066 Score=63.83 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
.|++....++|.||||||||++|..++..+ |...+.++.
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 367777889999999999999986655543 555565553
No 281
>PRK09354 recA recombinase A; Provisional
Probab=97.61 E-value=0.0005 Score=68.58 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s~----~~Ge--------~~~~ir~~F~~A~~~~ 118 (375)
.|++..+.++++||||||||+||..++.+ .|-..+.++..+-.+. -.|- ......+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 47888889999999999999999977654 3555565554431110 0000 0001223344444556
Q ss_pred HhCCceeeeecccccccCC
Q 017204 119 KKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~ 137 (375)
+...+.+|+||=+-++.++
T Consensus 135 ~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hcCCCCEEEEeChhhhcch
Confidence 7889999999999888753
No 282
>PLN02200 adenylate kinase family protein
Probab=97.60 E-value=7.5e-05 Score=70.49 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=34.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
++.+.|..|++.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 456678889999999999999999999999864 56666554
No 283
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.59 E-value=6.6e-05 Score=64.94 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
|+|+|+||+|||++|+.+|+++|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999887554
No 284
>PRK13948 shikimate kinase; Provisional
Probab=97.59 E-value=0.00014 Score=66.13 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
++|..|+|.|++|+|||++++.+|+.+|..|+..+ .+.....|.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~s 52 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGKS 52 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhCC
Confidence 56788999999999999999999999999999766 3333444443
No 285
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00034 Score=65.08 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCccccC-C-------CC---------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-------AG--------------- 101 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s~-~-------~G--------------- 101 (375)
.|++....+.|+||||||||++|..++... +...+.++..+-.+. . .|
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 578888899999999999999999998653 245566655431110 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CceeeeecccccccC
Q 017204 102 EPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGAG 136 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~-~p~IL~iDEiD~i~~ 136 (375)
.+...+...+....+.+.+. .+.+|+||-+.++..
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 00112223334444445566 899999999988753
No 286
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.58 E-value=0.00014 Score=66.69 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=40.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC----ceEEec-cCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI----NPIMMS-AGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~----~~i~vs-~s~l~s---------~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
.+++.||+|+|||+++++++..+.. ..+.+. ..++.. ..+|.... .|..+...+-...|.+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~----~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTL----SFENALKAALRQDPDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCcc----CHHHHHHHHhcCCcCEE
Confidence 3789999999999999999988753 222221 112111 11222222 23333222256679999
Q ss_pred eeccc
Q 017204 127 MINDL 131 (375)
Q Consensus 127 ~iDEi 131 (375)
++||+
T Consensus 79 i~gEi 83 (198)
T cd01131 79 LVGEM 83 (198)
T ss_pred EEcCC
Confidence 99998
No 287
>PRK00625 shikimate kinase; Provisional
Probab=97.55 E-value=8.1e-05 Score=67.11 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=29.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 288
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.55 E-value=0.00023 Score=62.64 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
++|.||||+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866554
No 289
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.54 E-value=0.00099 Score=61.91 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
++.++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 57899999999999999999983
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.54 E-value=7.8e-05 Score=66.73 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
|++.||||+|||++|+.+|+++|+ ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999985 455555444
No 291
>PRK08233 hypothetical protein; Provisional
Probab=97.54 E-value=0.00033 Score=62.24 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-CceEEe
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMM 90 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg-~~~i~v 90 (375)
+..|.+.|+||+|||++|+.++..++ ...+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 46788999999999999999999986 334433
No 292
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.54 E-value=0.00056 Score=63.26 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....+.|+||||+|||++|..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 588888899999999999999999998763
No 293
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.53 E-value=6.9e-05 Score=65.74 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=29.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.||++|-||||||++|..||..+|+.++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 5899999999999999999999999988876
No 294
>PRK14531 adenylate kinase; Provisional
Probab=97.53 E-value=9.3e-05 Score=66.83 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
+-|++.||||+|||++++.+|+.+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999876554
No 295
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.52 E-value=0.00034 Score=64.99 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=52.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccCcccc--------------------------CC---C
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELES--------------------------GN---A 100 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s~l~s--------------------------~~---~ 100 (375)
.|++....+|+.||||+|||+++..++.+. |.+.+.++..+-.. .+ .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 588888999999999999999999876543 77776666332110 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
+.....+..++....+.++..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0001123344444444457778899999999988
No 296
>PRK14532 adenylate kinase; Provisional
Probab=97.52 E-value=8.1e-05 Score=67.13 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
.|+|.||||+|||++|+.+|+++|+.+ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence 488999999999999999999998655 4444443
No 297
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.49 E-value=4.2e-05 Score=78.44 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHH-------H----HHHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~-------A----~~~~~~~~p 123 (375)
....+++.|++||||+++|+++.... +.+|+.++++.+.+.+. -..+|+. + ...+.....
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 34569999999999999999998874 45899999887632111 1112221 0 001123446
Q ss_pred eeeeecccccccC
Q 017204 124 CCLMINDLDAGAG 136 (375)
Q Consensus 124 ~IL~iDEiD~i~~ 136 (375)
..|||||||.+..
T Consensus 230 gtl~l~ei~~l~~ 242 (463)
T TIGR01818 230 GTLFLDEIGDMPL 242 (463)
T ss_pred CeEEEEchhhCCH
Confidence 7899999987654
No 298
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.48 E-value=0.00061 Score=68.66 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------CCCC--------hHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAAD 116 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------~~Ge--------~~~~ir~~F~~A~~ 116 (375)
.|+.+...+||+|+||+|||+|+..+|..+ +...++++..+-.+. ..|. .+..+..+++.
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~--- 153 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS--- 153 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH---
Confidence 377777889999999999999999998764 345666665432110 0110 11122333333
Q ss_pred HHHhCCceeeeecccccccCC
Q 017204 117 IIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~ 137 (375)
+...+|.+|+||+|-.+...
T Consensus 154 -i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 -IEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred -HHhcCCcEEEEcchHHhhcc
Confidence 36778999999999887543
No 299
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.47 E-value=0.00033 Score=61.32 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 95 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l 95 (375)
++|.|+||+|||++|+.++..+ +.+.+.+++-.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666666665444
No 300
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.46 E-value=0.00014 Score=68.41 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
..|.-|+|.||||+|||++|+.+|+.+|+.++.+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34566999999999999999999999987655543
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.46 E-value=0.00044 Score=65.12 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=54.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccc----------------------------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---------------------------------- 96 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~---------------------------------- 96 (375)
.|+++...+|++||||||||.+|..++.+ .|.+.+.++..+-.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence 58888899999999999999999876654 25555555432210
Q ss_pred -----cCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 97 -----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 97 -----s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..|+-.....+..++....+.+...++.+|+||-+-.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~ 140 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI 140 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc
Confidence 0011112234455555555555677888999999987643
No 302
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.46 E-value=0.00031 Score=67.93 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
++.|+|.||||||||++|+.+++.+. +++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 56789999999999999999999983 3344444444
No 303
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.45 E-value=0.0014 Score=59.25 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+++...+.|.||.|+|||+|.+++...
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4455667899999999999999999744
No 304
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.45 E-value=0.00045 Score=71.13 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHH-HHHHHHH-----------HHHHhCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGK 122 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir-~~F~~A~-----------~~~~~~~ 122 (375)
....||++|++||||-.+|++|-+... -+|+.++++.+- +.++. ++|+... .......
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-------~~l~ESELFGhekGAFTGA~~~r~G~fE~A~ 235 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-------ENLLESELFGHEKGAFTGAITRRIGRFEQAN 235 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-------HHHHHHHhhcccccCcCCcccccCcceeEcC
Confidence 345699999999999999999988764 499999988663 11111 1333210 0112334
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
...||||||..+.- .++.-|+.++...+--.+.+. ..-.-.|=||++||+.
T Consensus 236 GGTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d 286 (464)
T COG2204 236 GGTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD 286 (464)
T ss_pred CceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC
Confidence 57899999964422 223334444442111111111 1123457799999974
No 305
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.45 E-value=0.00034 Score=71.20 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 124 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~-----------~~~~~~~p~ 124 (375)
...++++|.+||||+++|+++.... +.+|+.++++.+...+ .-..+|+... ..+......
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL------LESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH------HHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4579999999999999999997664 4689999988664211 1112232110 011234578
Q ss_pred eeeecccccccCC
Q 017204 125 CLMINDLDAGAGR 137 (375)
Q Consensus 125 IL~iDEiD~i~~~ 137 (375)
.|||||||.+...
T Consensus 236 tl~ldei~~l~~~ 248 (441)
T PRK10365 236 TLFLDEIGDISPM 248 (441)
T ss_pred EEEEeccccCCHH
Confidence 8999999987543
No 306
>PRK13949 shikimate kinase; Provisional
Probab=97.45 E-value=0.00012 Score=65.57 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.||||+|||++++.+|+.++++++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999888766
No 307
>PRK13946 shikimate kinase; Provisional
Probab=97.45 E-value=0.00026 Score=64.01 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.++.|+|.|+||||||++++.+|+.+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999988765
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00014 Score=65.88 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
-|+|.||||+||||+|+.||+.+ ++..++...+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 47899999999999999999995 45566655443
No 309
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.44 E-value=0.00012 Score=65.87 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
|+|.||||+|||++|+.+|+.+|+.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999998866544
No 310
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.44 E-value=0.00013 Score=62.46 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
|.+.|+||||||++|+.+|..+|++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987776
No 311
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.44 E-value=0.00015 Score=76.60 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHH-----HHHHHHHHHHHHhCCceeeeecccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~i-----r~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
---.|||+|-||||||.+.+.+++-+-...+. |+- -+.-+|-+.... +++.-+. ..+--....|-.|||+|
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGk--GsSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGK--GSSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDEFD 536 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCC--ccchhcceeeEEecCccceeeeec-CcEEEcCCceEEchhhh
Confidence 33579999999999999999998876444332 111 000111100000 0011110 01113445688899999
Q ss_pred cccCCCCCCcccchhhH-HHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhcCC
Q 017204 133 AGAGRMGGTTQYTVNNQ-MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRD 198 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~-~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~ 198 (375)
++...- . .+..+ +-+|++ .+.. -|. ...-+.+.-||+++|-.+ .|+|.||+
T Consensus 537 KM~dSt----r-SvLhEvMEQQTv-SIAK-------AGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS- 601 (804)
T KOG0478|consen 537 KMSDST----R-SVLHEVMEQQTL-SIAK-------AGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS- 601 (804)
T ss_pred hhhHHH----H-HHHHHHHHHhhh-hHhh-------cce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh-
Confidence 983321 1 11111 222222 1111 122 123345667999999322 58899998
Q ss_pred CcceEEEe---CCCHH
Q 017204 199 GRMEKFYW---APTRE 211 (375)
Q Consensus 199 gRfd~~i~---~P~~~ 211 (375)
|||.++. .|++.
T Consensus 602 -RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 -RFDLIFLLLDKPDER 616 (804)
T ss_pred -hhcEEEEEecCcchh
Confidence 9999888 46665
No 312
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.43 E-value=0.00029 Score=64.33 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=56.2
Q ss_pred EEEEEcCCCchHHHHHHHH-HHH---hCCceEEeccCccc----cCCCCChHH--HH----------HHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELE----SGNAGEPAK--LI----------RQRYREAADIIKK 120 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aI-A~e---lg~~~i~vs~s~l~----s~~~Ge~~~--~i----------r~~F~~A~~~~~~ 120 (375)
..+++|.||+|||+.|-.. ... -|..++. +-..|. ....+.... .+ ...+... ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 4689999999999987544 333 2555444 222121 111111111 00 0111111 011
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCc
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 200 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gR 200 (375)
...+||+|||+-...+.+.... ......+ +.| . .....++-||.+|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~------------~hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A------------QHRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGG----G------------GCCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H------------HhCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2578999999999888875211 1111222 122 1 1344567899999999999998875 7
Q ss_pred ceEEEe
Q 017204 201 MEKFYW 206 (375)
Q Consensus 201 fd~~i~ 206 (375)
.+..+.
T Consensus 137 ve~~~~ 142 (193)
T PF05707_consen 137 VEYHYH 142 (193)
T ss_dssp EEEEEE
T ss_pred HheEEE
Confidence 777665
No 313
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.43 E-value=0.00045 Score=69.31 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+|+||.|||--|||||+|.-.....+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 469999999999999999999888553
No 314
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.42 E-value=0.00071 Score=62.34 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.||.+....++|.|+-|+|||++.+.++.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 679999999999999999999999999766
No 315
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.41 E-value=0.00055 Score=74.60 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~F~~A~~~~ 118 (375)
.|++....++++||||||||+||..++.. .|-..+.++..+-.+. ..|-. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 47888899999999999999999765443 3455555554432210 01100 001112334444556
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...+.+|+||-|.++..
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 778899999999999886
No 316
>PRK06547 hypothetical protein; Provisional
Probab=97.40 E-value=0.00017 Score=64.95 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G 101 (375)
..+..|++.|++|+|||++|+.+++.+++.++.+. .+...+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d--~~~~~~~~ 55 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD--DLYPGWHG 55 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc--ceeccccc
Confidence 56788999999999999999999999987766543 34444433
No 317
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.39 E-value=0.00098 Score=63.75 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCcccc----------CCCCC---------------h--
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P-- 103 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s----------~~~Ge---------------~-- 103 (375)
.|++....+|++||||||||++|-.+|.+ .|.+.+.++..+-.. ...|- +
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~ 110 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASST 110 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCch
Confidence 58888899999999999999999987765 255555555331000 00010 0
Q ss_pred --HHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 104 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 104 --~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
...+..++..+...+++..+.+|+||=+-++.
T Consensus 111 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 144 (259)
T TIGR03878 111 ELRENVPNLLATLAYAIKEYKVKNTVIDSITGLY 144 (259)
T ss_pred hhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhc
Confidence 02344555555555667788999999886653
No 318
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.39 E-value=0.0011 Score=62.05 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs 91 (375)
.|+++..-++|.|+||+|||+++..++... |.+++.++
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 388888899999999999999998877663 67776665
No 319
>PRK06696 uridine kinase; Validated
Probab=97.39 E-value=0.00042 Score=64.61 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=37.7
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc
Q 017204 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 96 (375)
Q Consensus 43 ~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~ 96 (375)
+..++...++. ....|..|.+.|+||+|||++|+.|+..+ |...+.++...+.
T Consensus 7 ~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 7 IKELAEHILTL-NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 33444444432 23467899999999999999999999998 6666666655443
No 320
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.39 E-value=0.00072 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.+.--++|.||+|||||+|.++||.-
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 4455567999999999999999999986
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.38 E-value=0.00025 Score=68.48 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.++|.||||+|||+|.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999864
No 322
>PRK14527 adenylate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=65.70 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceE
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 88 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i 88 (375)
+.|..+++.||||+|||++|+.+|+++|+..+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45778999999999999999999999986543
No 323
>PRK05973 replicative DNA helicase; Provisional
Probab=97.38 E-value=0.0023 Score=60.58 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|+++...++|.|+||+|||+++-.++.+. |.+.+.++
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 488888899999999999999998877654 65555554
No 324
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00017 Score=65.01 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.|+||+|||++|+++++.+|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876654
No 325
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.36 E-value=0.00086 Score=71.17 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=62.9
Q ss_pred ccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC----ceEEeccCccccCCCCC--
Q 017204 29 IDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGE-- 102 (375)
Q Consensus 29 ~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~----~~i~vs~s~l~s~~~Ge-- 102 (375)
..+..+|+.|+-.-+..++..+.. +..+.+..|.|+|+||+|||++|+++|..++. +++.+++..+.....|+
T Consensus 363 ~~G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~ 441 (568)
T PRK05537 363 REGLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELG 441 (568)
T ss_pred HCCCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCC
Confidence 345566677776666667777654 45566778999999999999999999999885 34556655554333332
Q ss_pred -----hHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 103 -----PAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 103 -----~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.+..++.+-..|..+++.+ .++++|-+
T Consensus 442 f~~~er~~~~~~l~~~a~~v~~~G--g~vI~~~~ 473 (568)
T PRK05537 442 FSKEDRDLNILRIGFVASEITKNG--GIAICAPI 473 (568)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCC--CEEEEEeC
Confidence 2223333333443444443 56666655
No 326
>PRK04296 thymidine kinase; Provisional
Probab=97.36 E-value=0.00059 Score=62.18 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=42.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC----cc---ccCCCCChH-----HHHHHHHHHHHHHHHhCCce
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG----EL---ESGNAGEPA-----KLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s----~l---~s~~~Ge~~-----~~ir~~F~~A~~~~~~~~p~ 124 (375)
...+++||||+|||+++..++..+ |...+.++++ .. .....|-.. .....++..+.+ ....+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCC
Confidence 467899999999999998887775 5555555431 10 111122111 122344444322 345678
Q ss_pred eeeecccc
Q 017204 125 CLMINDLD 132 (375)
Q Consensus 125 IL~iDEiD 132 (375)
+|+|||+.
T Consensus 81 vviIDEaq 88 (190)
T PRK04296 81 CVLIDEAQ 88 (190)
T ss_pred EEEEEccc
Confidence 99999993
No 327
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00018 Score=64.70 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
+.|.|.|++|+|||++.+++|+.++.+|+.++ .+..+..|.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g~s 44 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTGMS 44 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHCcC
Confidence 45889999999999999999999999999876 3444444444
No 328
>PRK04040 adenylate kinase; Provisional
Probab=97.35 E-value=0.00021 Score=65.23 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh--CCceE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM--GINPI 88 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el--g~~~i 88 (375)
+|+.|+++|+||||||++++.+++++ +..++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 36789999999999999999999999 55443
No 329
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.35 E-value=0.00043 Score=65.49 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=40.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC---CCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---NAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~---~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
|+|.|+||+|||++|+.+++.+ +..++.++...+... |....+..++.....+...+-. ...++++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~-~~~~VI~D~~ 76 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALK-NKYSVIVDDT 76 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHh-CCCeEEEecc
Confidence 7899999999999999999987 456666665444221 2222334444443332111112 2345777764
No 330
>PRK14530 adenylate kinase; Provisional
Probab=97.35 E-value=0.0002 Score=66.28 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 488999999999999999999998766643
No 331
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.34 E-value=0.00025 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
|.|+|+||||||+|++++++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 689999999999999999998 777664
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.33 E-value=0.0003 Score=68.82 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEecc-Cccc-------cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELE-------SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs~-s~l~-------s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
..+.+++.||+|+|||+++++++..+. ...+.+.. .++. .-..++....+.++++.+ -+..|.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD 206 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPD 206 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence 346899999999999999999998862 23333221 1221 001111111233444444 678999
Q ss_pred eeeeccc
Q 017204 125 CLMINDL 131 (375)
Q Consensus 125 IL~iDEi 131 (375)
.|++.|+
T Consensus 207 ~iivGEi 213 (299)
T TIGR02782 207 RIIVGEV 213 (299)
T ss_pred EEEEecc
Confidence 9999999
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.00023 Score=63.66 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+++.||||+|||++|+.+++++|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68899999999999999999999865443
No 334
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.32 E-value=0.00067 Score=68.71 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=47.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCc------eEEeccC--------------ccccCCCCChHHH----HHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL----IRQRYREAA 115 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~------~i~vs~s--------------~l~s~~~Ge~~~~----ir~~F~~A~ 115 (375)
.-++|.||||+|||+|++.|++....+ ++.+... ++...-.+++... ...+...|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 348999999999999999999986433 2223211 1112223333322 223334444
Q ss_pred HHHHhCCceeeeeccccccc
Q 017204 116 DIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 116 ~~~~~~~p~IL~iDEiD~i~ 135 (375)
.....++..||||||+..++
T Consensus 249 ~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHcCCCeEEEEEChhHHH
Confidence 44457888999999998774
No 335
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.32 E-value=0.0012 Score=59.33 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
+|+.|+||+|||++|..++...+.+.+++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999998777777765443
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.30 E-value=0.0008 Score=65.78 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....++++||||+|||++|..+|...
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888899999999999999999998773
No 337
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.28 E-value=0.0023 Score=59.37 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=50.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC---------C-----CCC-------h----HH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---------N-----AGE-------P----AK 105 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~---------~-----~Ge-------~----~~ 105 (375)
.|+++...+++.|+||+|||.+|..++.+. |...+.++..+-.+. | .+. + ..
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKT 90 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence 478788899999999999999999887652 555555544321100 0 000 0 01
Q ss_pred HHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 106 LIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 106 ~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
.+..+......++++..+..++||-+..+
T Consensus 91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 91 SLNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 12333333444456677889999988776
No 338
>PRK02496 adk adenylate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=63.78 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
-+++.||||+|||++|+.+|+.+|+..+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 488999999999999999999998765543
No 339
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.26 E-value=0.00031 Score=62.23 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.|+||||||++++.+|+.+|++++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5889999999999999999999999887653
No 340
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.25 E-value=0.0017 Score=63.90 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....++++||||||||.+|..+|...
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 478888899999999999999999998763
No 341
>PRK14528 adenylate kinase; Provisional
Probab=97.25 E-value=0.00031 Score=63.81 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+++.||||+|||++|+.+|+.+|++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 48899999999999999999999877654
No 342
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.25 E-value=0.00049 Score=72.42 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC-ceEEeccC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAG 93 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~-~~i~vs~s 93 (375)
..+.++|.||||+|||+||++||+.+.. +++.+.++
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~ 138 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKAN 138 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCC
Confidence 3468999999999999999999999864 44456553
No 343
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.25 E-value=0.0011 Score=58.76 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCC---CCh----HHHHHHHHHHHHHHHHhCCceeeee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNA---GEP----AKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~---Ge~----~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
|..|.|+|.||+|||++|+++.+.+ |.+.+.+++..+...+. |-+ ..+++.+...|.-+..++ .++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G--~ivIv 79 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQG--IIVIV 79 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEE
Confidence 5678999999999999999999986 78899998888765432 222 334555545453333333 34444
Q ss_pred c
Q 017204 129 N 129 (375)
Q Consensus 129 D 129 (375)
.
T Consensus 80 a 80 (156)
T PF01583_consen 80 A 80 (156)
T ss_dssp E
T ss_pred e
Confidence 4
No 344
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00025 Score=63.05 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|-+.||||||||++|+.+|+.+|++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36689999999999999999999998654
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.24 E-value=0.00061 Score=61.70 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccC-ccccC---C----------CCChHHHHHHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESG---N----------AGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s-~l~s~---~----------~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
+....++|.||+|+|||++.++++..+.. ..+.+... ++... + .+.+...+.+.++.+ ..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----lR 98 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSA----LR 98 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHH----hc
Confidence 44567999999999999999999987532 22322211 11100 0 011112233444443 57
Q ss_pred CCceeeeeccc
Q 017204 121 GKMCCLMINDL 131 (375)
Q Consensus 121 ~~p~IL~iDEi 131 (375)
..|.+|+++|+
T Consensus 99 ~~pd~i~igEi 109 (186)
T cd01130 99 MRPDRIIVGEV 109 (186)
T ss_pred cCCCEEEEEcc
Confidence 78999999999
No 346
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.24 E-value=0.00061 Score=66.86 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 42 LVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 42 ~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.+.++++.++ ....+.++..|.|.|+||||||++++.+|+.+|++|+.+.
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 4556666654 3456777889999999999999999999999999999544
No 347
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.24 E-value=0.0011 Score=60.69 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCceEEeccCccccCC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 99 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~vs~s~l~s~~ 99 (375)
....|..+++.|+||+|||++++.+..++ +-.++.+++.++....
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 34789999999999999999999999998 7788999988876544
No 348
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.24 E-value=0.00027 Score=65.16 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876554
No 349
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.00061 Score=64.06 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=43.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC--------ceEEec-cCccccCCCCChHHHHHHHHHH------H---HHHHHhCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI--------NPIMMS-AGELESGNAGEPAKLIRQRYRE------A---ADIIKKGK 122 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~--------~~i~vs-~s~l~s~~~Ge~~~~ir~~F~~------A---~~~~~~~~ 122 (375)
..|+.||||||||++.|-||.-+.. .+..++ .+++.....|-+.--+-....- + -.++++..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 5789999999999999988887532 233333 3344433333322111111110 1 13457999
Q ss_pred ceeeeeccc
Q 017204 123 MCCLMINDL 131 (375)
Q Consensus 123 p~IL~iDEi 131 (375)
|-||++|||
T Consensus 219 PEViIvDEI 227 (308)
T COG3854 219 PEVIIVDEI 227 (308)
T ss_pred CcEEEEecc
Confidence 999999999
No 350
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.24 E-value=0.00051 Score=60.81 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc---eEEeccCcc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGEL 95 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~---~i~vs~s~l 95 (375)
.....++.++|+|+||+|||++.+++...+... ++.+.....
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 445567899999999999999999888876544 555554433
No 351
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.23 E-value=0.00066 Score=67.60 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=41.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC----ceEEec-cCccc---------cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMS-AGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~----~~i~vs-~s~l~---------s~~~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
..+|+.||+|+|||++.+++..++.- .++.+. ..++. ...+|.... -|..+...+-...|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~----~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTL----SFANALRAALREDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCc----CHHHHHHHhhccCCCE
Confidence 45889999999999999999987642 233322 11211 112232211 2333322235789999
Q ss_pred eeeccc
Q 017204 126 LMINDL 131 (375)
Q Consensus 126 L~iDEi 131 (375)
|++||+
T Consensus 199 i~vgEi 204 (343)
T TIGR01420 199 ILIGEM 204 (343)
T ss_pred EEEeCC
Confidence 999999
No 352
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.00058 Score=68.58 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----ceEE--ecc--C-----------ccccCCCCChH-HHH---HHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIM--MSA--G-----------ELESGNAGEPA-KLI---RQRYREAAD 116 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~-----~~i~--vs~--s-----------~l~s~~~Ge~~-~~i---r~~F~~A~~ 116 (375)
-.||.||||||||+|++.+++.+.. .++. |.- . .+...+..++. ..+ ......|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998743 2222 111 0 11111211222 222 233344444
Q ss_pred HHHhCCceeeeecccccccC
Q 017204 117 IIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~ 136 (375)
....++..||++||+..++.
T Consensus 215 f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHcCCCEEEEEeCcHHHHH
Confidence 55588999999999987743
No 353
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.22 E-value=0.00032 Score=64.94 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
-|+++||||+|||++|+.+|+.+|+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38899999999999999999999865554
No 354
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.21 E-value=0.0014 Score=75.03 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=95.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc------cCC-CCC-hH--HHHHHHHHHHHHHHHhCCcee
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------SGN-AGE-PA--KLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~------s~~-~Ge-~~--~~ir~~F~~A~~~~~~~~p~I 125 (375)
..+.+++||-|.||+|||+|..++|+++|-..+.++.++-. ..+ .++ ++ +.....|-.| -....-
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~W 1614 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGW 1614 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCE
Confidence 35667899999999999999999999999999998877532 111 122 11 1122334443 334467
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC-CCCceEEEEeCC------CCCCChhhcCC
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGND------FSTLYAPLIRD 198 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~-~~~V~VI~TTN~------~~~Ld~ALlR~ 198 (375)
+++||+.- ..|.|-.-|...||+-.-..+++.+..-. .++..|.+|-|. -..||..++-
T Consensus 1615 VlLDEiNL-------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1615 VLLDEINL-------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred EEeehhhh-------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 89999952 12445555666677655555555543322 345566677663 3579999985
Q ss_pred CcceEEEe-CCCHHHHHHhhhhhcCC
Q 017204 199 GRMEKFYW-APTREDRIGVCKGIFRN 223 (375)
Q Consensus 199 gRfd~~i~-~P~~~~R~~Il~~~l~~ 223 (375)
||.+++. .-+.++...|...++..
T Consensus 1681 -RFsvV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1681 -RFSVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -hhheEEecccccchHHHHHHhhCCc
Confidence 8888776 66777777776665543
No 355
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.21 E-value=0.0041 Score=64.32 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------CCCChHHHHH----HHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKK 120 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------~~Ge~~~~ir----~~F~~A~~~~~~ 120 (375)
.|+.+...+||+|+||+|||+|+..++..+ |.+.++++..+-.+. ..|-....+. ..+....+.+.+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 478888889999999999999999987764 345667765432211 0111000000 001122233467
Q ss_pred CCceeeeecccccccC
Q 017204 121 GKMCCLMINDLDAGAG 136 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~ 136 (375)
.+|.+|+||.|-.+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 7899999999987743
No 356
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.21 E-value=0.0028 Score=63.28 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.|++......|+||||||||.||..+|-.
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 37777788999999999999999988743
No 357
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.20 E-value=0.00033 Score=72.01 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccc-----cCCCCChH-------HHHHHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE-----SGNAGEPA-------KLIRQRYREAADIIKKG 121 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~-----s~~~Ge~~-------~~ir~~F~~A~~~~~~~ 121 (375)
+....|||.|.+||||-.+|++|-+... -+|+.++++.+- |..+|--- ..=+..|+-|
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElA------- 316 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELA------- 316 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeec-------
Confidence 4556799999999999999999988754 589999988663 22222100 0011222222
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcc
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRf 201 (375)
...-||+|||-.+- -.++.-|+.++.+..-..+.+. ..-.-.|-||++||+- |-. ..|.|+|
T Consensus 317 dGGTLFLDEIGelP-------------L~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNRD--L~~-~V~~G~F 378 (550)
T COG3604 317 DGGTLFLDEIGELP-------------LALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNRD--LEE-MVRDGEF 378 (550)
T ss_pred CCCeEechhhccCC-------------HHHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccchh--HHH-HHHcCcc
Confidence 34579999994332 2334555555553221111111 0112346899999973 222 3345665
Q ss_pred e
Q 017204 202 E 202 (375)
Q Consensus 202 d 202 (375)
-
T Consensus 379 R 379 (550)
T COG3604 379 R 379 (550)
T ss_pred h
Confidence 4
No 358
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.0022 Score=56.83 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|.+.++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566789999999999999999999874
No 359
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.19 E-value=0.00064 Score=69.21 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.....+++.||||||||+++.+++.+
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 345568999999999999999998877
No 360
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.19 E-value=0.0034 Score=57.48 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA 80 (375)
...++|.||.|+|||++.+.|+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3679999999999999999999
No 361
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00028 Score=63.38 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
-|+++|.||||||++|+.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999877765
No 362
>PRK13764 ATPase; Provisional
Probab=97.19 E-value=0.00052 Score=72.94 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
...++|+.||||+|||+++++++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998875
No 363
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.19 E-value=0.00042 Score=62.14 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
++.|+|.||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999998877664
No 364
>PF13245 AAA_19: Part of AAA domain
Probab=97.18 E-value=0.00065 Score=52.94 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHH-HHHHHHHHHh------CCceEEeccC
Q 017204 61 ILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 93 (375)
Q Consensus 61 glLL~GPPGtGKT-~LA~aIA~el------g~~~i~vs~s 93 (375)
.+++.|||||||| ++++.++... +..++.++..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4566999999999 5566666655 4455555544
No 365
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.18 E-value=0.0026 Score=62.72 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=49.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCcccc---------CCCC--------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GNAG-------------- 101 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s---------~~~G-------------- 101 (375)
.|++.....+|+||||+|||.+|..+|-.. +...++++..+-++ .+--
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~ 170 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARA 170 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecC
Confidence 378888889999999999999999877432 33455555433110 0000
Q ss_pred -ChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 102 -EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 102 -e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..+.. -+++......+....+.+|+||-|-++..
T Consensus 171 ~~~e~~-~~~l~~l~~~i~~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 171 YTSEHQ-MELLDYLAAKFSEEPFRLLIVDSIMALFR 205 (313)
T ss_pred CCHHHH-HHHHHHHHHHhhccCCCEEEEEcchHhhh
Confidence 11111 12233333344566789999999987754
No 366
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.15 E-value=0.003 Score=56.25 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=48.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH---hCCceEE---eccCc----c--cc--------------CCC-C---ChHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE----L--ES--------------GNA-G---EPAKLIRQRY 111 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~e---lg~~~i~---vs~s~----l--~s--------------~~~-G---e~~~~ir~~F 111 (375)
|.+|+++|.|||++|-.+|-. .|..+.. +++.. . .. .|. . +.....+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 668999999999999987766 3444444 55531 0 00 000 1 1123556677
Q ss_pred HHHHHHHHhCCceeeeecccccc
Q 017204 112 REAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
+.|.+.+......+|+||||-..
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a 107 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYA 107 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhH
Confidence 77878888888999999999543
No 367
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.14 E-value=0.00066 Score=71.25 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=73.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC---------cc----ccCCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG---------EL----ESGNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s---------~l----~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
..+||.|-||||||-+.+-+++-....++..--+ .. ...|.=|.+.+ --....|.
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGAL------------VLADkGvC 550 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGAL------------VLADKGVC 550 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeE------------EEccCceE
Confidence 3699999999999999999998865555442211 11 11122121111 12334688
Q ss_pred eecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCC
Q 017204 127 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLY 192 (375)
Q Consensus 127 ~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-~~~~~~~~V~VI~TTN~~~-------------~Ld 192 (375)
+|||+|++-.... .+.-..+-+|.+ ++... .......+..||+|+|-.. .|-
T Consensus 551 lIDEFDKMndqDR----tSIHEAMEQQSI----------SISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~lt 616 (854)
T KOG0477|consen 551 LIDEFDKMNDQDR----TSIHEAMEQQSI----------SISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLT 616 (854)
T ss_pred Eeehhhhhccccc----chHHHHHHhcch----------hhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccc
Confidence 9999999853211 111111111111 11100 0012235568999999621 455
Q ss_pred hhhcCCCcceEEEe-----CCCHHHHH--HhhhhhcCC
Q 017204 193 APLIRDGRMEKFYW-----APTREDRI--GVCKGIFRN 223 (375)
Q Consensus 193 ~ALlR~gRfd~~i~-----~P~~~~R~--~Il~~~l~~ 223 (375)
.+++. |||..-. -|-.+++. -++..|.+.
T Consensus 617 ePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 617 EPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred cchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 66775 8997655 26666653 345666543
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.12 E-value=0.0022 Score=61.13 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~ 92 (375)
.|+.+...++|.||||+|||+++..++..+ |.+++.++.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 377777889999999999999999887763 666666554
No 369
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.11 E-value=0.0012 Score=63.60 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=42.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc---cCC-CCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~---s~~-~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
|+|+|-||+|||++|+.|+..+ +..++.++...+. +.| -...++.+|..+..+.+-.- .+..|+++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7899999999999999999874 5666677654443 112 23457888888776643322 33479999987543
No 370
>PLN02674 adenylate kinase
Probab=97.11 E-value=0.0005 Score=65.36 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
+++..|+|.||||+|||++|+.+|+.+|+. .++.++++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 445678999999999999999999999864 45555443
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.11 E-value=0.0006 Score=58.96 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 556689999999999999999999999875
No 372
>PRK01184 hypothetical protein; Provisional
Probab=97.10 E-value=0.00052 Score=61.62 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+.|+|.||||+|||++++ +++++|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468899999999999998 788898776554
No 373
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.10 E-value=0.0025 Score=67.85 Aligned_cols=138 Identities=11% Similarity=0.013 Sum_probs=77.6
Q ss_pred hhCCCCCC-C-cEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccCCCCChHHHHHHHHHHH-----HHHHHhC
Q 017204 51 MSLPNIKV-P-LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKG 121 (375)
Q Consensus 51 l~~~~~~~-p-~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----~~~~~~~ 121 (375)
+.+.-+.| . -||||-|++|||||+++++++.-+.. +|+.+..+.-.+..+|.. -|......- -.++...
T Consensus 15 l~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~A 92 (584)
T PRK13406 15 AALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEA 92 (584)
T ss_pred HHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeec
Confidence 33334444 2 48999999999999999999998754 777765554444445532 011111110 0111233
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCC---CCCChhhcC
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIR 197 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ALlR 197 (375)
...|||+||+..+-. -+...|++-++.-. .|+=+|.. .....+.++|+|-|.. ..|+++++
T Consensus 93 h~GvL~lDe~n~~~~-------------~~~~aLleame~G~vtIeR~G~s-~~~Pa~F~LIat~~~~~~~~~L~~~lL- 157 (584)
T PRK13406 93 DGGVLVLAMAERLEP-------------GTAARLAAALDTGEVRLERDGLA-LRLPARFGLVALDEGAEEDERAPAALA- 157 (584)
T ss_pred cCCEEEecCcccCCH-------------HHHHHHHHHHhCCcEEEEECCcE-EecCCCcEEEecCCChhcccCCCHHhH-
Confidence 457999999964322 22345555555211 11112221 1122455677764432 45899998
Q ss_pred CCcceEEEe
Q 017204 198 DGRMEKFYW 206 (375)
Q Consensus 198 ~gRfd~~i~ 206 (375)
.||+..+.
T Consensus 158 -DRf~l~v~ 165 (584)
T PRK13406 158 -DRLAFHLD 165 (584)
T ss_pred -hheEEEEE
Confidence 49999998
No 374
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00028 Score=75.69 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=77.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHH-H----HHHHHHHhCCceeeeecccccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-R----EAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F-~----~A~~~~~~~~p~IL~iDEiD~i 134 (375)
-.|||.|-||||||.|.+.+++-+-..++..--+ +.-+|-+...+++.+ . +| ..+--..+.|..|||+|++
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkg---ss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKG---SSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccc---ccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCC
Confidence 4699999999999999999998876554431111 111122222222211 0 11 0112456789999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCChhhcCCCc
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 200 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR~gR 200 (375)
-..- ....-..+-+|++ ++..- .....+.+.-|++++|-.. .|+++|+. |
T Consensus 396 ~~~d----r~aihEaMEQQtI----------sIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEED----RVAIHEAMEQQTI----------SIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChHH----HHHHHHHHHhcEe----------eecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 4321 1111111222211 11111 1122345667889998654 58899996 9
Q ss_pred ceEEEe---CCCHHHH----HHhhhhhc
Q 017204 201 MEKFYW---APTREDR----IGVCKGIF 221 (375)
Q Consensus 201 fd~~i~---~P~~~~R----~~Il~~~l 221 (375)
||..+. .|+.+.= ..|+..|.
T Consensus 460 FDLifvl~D~~d~~~D~~ia~hil~~h~ 487 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEIAEHILDKHR 487 (682)
T ss_pred CCeeEEecCCCCccchHHHHHHHHHHHh
Confidence 999888 4666533 33455554
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.10 E-value=0.0022 Score=56.90 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
.+++.||||+|||+++..+|..+ |..+..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999988875 5556655544
No 376
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.09 E-value=0.00039 Score=64.36 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+|||+||||||||++|+.+..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999764
No 377
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.09 E-value=0.00036 Score=60.74 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.2
Q ss_pred EEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 64 L~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
|.||||+|||++|+.||++.|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999975 555555444
No 378
>PRK04182 cytidylate kinase; Provisional
Probab=97.09 E-value=0.00053 Score=60.70 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|+|.|+||||||++|+.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999988765
No 379
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.09 E-value=0.00059 Score=65.20 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=42.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc---eEEec-cCccccCCC-------CChHHHHHHHHHHHHHHHHhCCcee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~---~i~vs-~s~l~s~~~-------Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
+....+++.||+|+|||++.+++..++.-. ++.+. ..++.-... ........+++..+ -...|.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ 200 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV 200 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence 445679999999999999999999987544 23322 222211110 01112233444444 6788999
Q ss_pred eeeccc
Q 017204 126 LMINDL 131 (375)
Q Consensus 126 L~iDEi 131 (375)
|+|+||
T Consensus 201 iiigEi 206 (270)
T PF00437_consen 201 IIIGEI 206 (270)
T ss_dssp EEESCE
T ss_pred cccccc
Confidence 999999
No 380
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.08 E-value=0.0017 Score=59.64 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
|+.++|.||+|+|||+.+-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 7889999999999999988888775
No 381
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.07 E-value=0.00042 Score=57.51 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el 83 (375)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 382
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.06 E-value=0.00099 Score=65.12 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
+.+.|..+++.|++|||||++|..+|..+|.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 556789999999999999999999999999873
No 383
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.05 E-value=0.0021 Score=57.37 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC---ceEEeccCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGE 94 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~---~~i~vs~s~ 94 (375)
+.|.-|+|.|+||+|||++|+.++..+.. ..+.+++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 56778999999999999999999999862 344454433
No 384
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.05 E-value=0.00061 Score=56.08 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
++++++||+|+|||+++...+.++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999988887764
No 385
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.05 E-value=0.0012 Score=65.36 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEec-cCccccC------CCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs-~s~l~s~------~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
.+.+|+.|++|+|||++.++++.+.. ..++.+- ..|+.-. +.....-....+.+.+ -...|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCEE
Confidence 45799999999999999999998862 2333322 2233211 0011111233444444 67899999
Q ss_pred eeccc
Q 017204 127 MINDL 131 (375)
Q Consensus 127 ~iDEi 131 (375)
++.|+
T Consensus 220 ivGEi 224 (323)
T PRK13833 220 IVGEV 224 (323)
T ss_pred EEeec
Confidence 99999
No 386
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.04 E-value=0.0042 Score=65.03 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH-h---CCceEEeccCcccc--------------------------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELES-------------------------------- 97 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e-l---g~~~i~vs~s~l~s-------------------------------- 97 (375)
.|++....+||+|+||+|||+|+..++.+ + |-+.+.++..+-..
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence 47888899999999999999999977654 2 44554444322110
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.+.......+..++.+..+.+...++..|+||-+..+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 000000112345566665666788899999999987643
No 387
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.04 E-value=0.0012 Score=66.58 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC-----CceEEeccC-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhCCc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGKM 123 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg-----~~~i~vs~s-~l~-----------s~~~Ge~~~~ir~~F~~A~~~~~~~~p 123 (375)
.+|+.||+|+|||++.+++..++. .+.+.+.-+ ++. ...+|.... -|..+...+-...|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRAP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccCC
Confidence 478999999999999999988863 334443221 221 111222211 34444333467899
Q ss_pred eeeeeccc
Q 017204 124 CCLMINDL 131 (375)
Q Consensus 124 ~IL~iDEi 131 (375)
.+|++.|+
T Consensus 227 D~I~vGEi 234 (372)
T TIGR02525 227 KIIGVGEI 234 (372)
T ss_pred CEEeeCCC
Confidence 99999999
No 388
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.03 E-value=0.0015 Score=64.14 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEec-cCccccC---C---------CCChHHHHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG---N---------AGEPAKLIRQRYREAADIIK 119 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs-~s~l~s~---~---------~Ge~~~~ir~~F~~A~~~~~ 119 (375)
-++....+++.||+|+|||+++++++..+.- ..+.+. ..++.-. + .|...-.+.+++..+ -
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----L 215 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----L 215 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----h
Confidence 3455678999999999999999999988632 222221 1111100 0 011112233444444 5
Q ss_pred hCCceeeeeccc
Q 017204 120 KGKMCCLMINDL 131 (375)
Q Consensus 120 ~~~p~IL~iDEi 131 (375)
...|.+|++||+
T Consensus 216 r~~pd~ii~gE~ 227 (308)
T TIGR02788 216 RMRPDRIILGEL 227 (308)
T ss_pred cCCCCeEEEecc
Confidence 788999999999
No 389
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.03 E-value=0.0012 Score=65.35 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC-Ch----H---HHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG-EP----A---KLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G-e~----~---~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.+.+.|.|+||+|||+|++.++..++..++.-.+-+......+ +. + ..+...+... +.....+..|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~-~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYI-DYAVRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHH-HHHHhhcCCeEEEcC
Confidence 4578999999999999999999999998876544433322221 11 1 2233333221 112244667999994
No 390
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.03 E-value=0.0058 Score=55.91 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA 80 (375)
+.++|.||.|+|||++.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999988
No 391
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.02 E-value=0.00068 Score=62.40 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
.|+.+++.|+||+|||++|+.+|.++|+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367899999999999999999999998754
No 392
>PRK14526 adenylate kinase; Provisional
Probab=97.01 E-value=0.00064 Score=63.20 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
++|.||||+|||++++.+|+.+++.. ++.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 78999999999999999999988654 444444
No 393
>PTZ00035 Rad51 protein; Provisional
Probab=97.01 E-value=0.0042 Score=61.86 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....+.|+||||||||.++..++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 378788889999999999999999887543
No 394
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.01 E-value=0.0019 Score=57.99 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
.+|+.||||+|||++|..++.+++.+.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766544
No 395
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.001 Score=50.52 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCceEEecc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 92 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el-g~~~i~vs~ 92 (375)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444444
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.00 E-value=0.0095 Score=53.89 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA 80 (375)
++|+||.|.|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 397
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.00 E-value=0.0023 Score=57.59 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 96 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~ 96 (375)
....+..+.|.|+||+|||++|++++..+ |...+.+++..+.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 34667889999999999999999999987 4455666665553
No 398
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.99 E-value=0.0022 Score=62.48 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHhhhhCC-------CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 44 VHITKNFMSLP-------NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 44 ~~~~k~~l~~~-------~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+....||..- -...|.+..+|||.|||||.|.|.+-.-
T Consensus 65 ~~~~~~~L~~dG~~~SLN~~~qP~I~~VYGPTG~GKSqLlRNLis~ 110 (369)
T PF02456_consen 65 MNEASPYLRPDGSCPSLNYGLQPFIGVVYGPTGSGKSQLLRNLISC 110 (369)
T ss_pred HHHHHHhcCcCCcccccccCCCceEEEEECCCCCCHHHHHHHhhhc
Confidence 44455666432 3456888999999999999999976543
No 399
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.99 E-value=0.0013 Score=63.92 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=52.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH------hCCceEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIK 119 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e------lg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----------~~~~~ 119 (375)
+...-+||.||.|.|||+||+.|..- +.-.|+.+++..|. |.+ ....+|... ..+++
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr----gd~--amsalfghvkgaftga~~~r~gllr 279 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR----GDT--AMSALFGHVKGAFTGARESREGLLR 279 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec----Cch--HHHHHHhhhccccccchhhhhhhhc
Confidence 34445999999999999999998764 45589999999886 322 223344321 25566
Q ss_pred hCCceeeeeccccccc
Q 017204 120 KGKMCCLMINDLDAGA 135 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~ 135 (375)
......||+|||-.+.
T Consensus 280 sadggmlfldeigelg 295 (531)
T COG4650 280 SADGGMLFLDEIGELG 295 (531)
T ss_pred cCCCceEehHhhhhcC
Confidence 7778899999996653
No 400
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.99 E-value=0.00053 Score=62.51 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998776666665
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.001 Score=66.99 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+.....++|.||+|+|||+++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445789999999999999999999863
No 402
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0027 Score=57.99 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 95 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l 95 (375)
..|..+.|.|+||+|||+++++++..+ |...+.+++..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 567789999999999999999999986 455666765544
No 403
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0031 Score=59.91 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=51.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccc----------------------------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---------------------------------- 96 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~---------------------------------- 96 (375)
.|++....+|++||||||||.||..++.+ .|.+.+.++..+-.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~ 97 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIG 97 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEeccccccc
Confidence 47888889999999999999999876654 23344443321100
Q ss_pred -----cCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 97 -----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 97 -----s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
..|+-.....+...+....+.+++..+.+|+||-+-.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~ 141 (249)
T PRK04328 98 SAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLY 141 (249)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhh
Confidence 001000122344555555555567788999999998764
No 404
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.97 E-value=0.00078 Score=59.19 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|.|+|+||+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 48899999999999999999999987654
No 405
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0053 Score=53.63 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.+...++|.||+|+|||+|.++++..+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44456899999999999999999998754
No 406
>PRK14974 cell division protein FtsY; Provisional
Probab=96.93 E-value=0.0068 Score=60.31 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
.|..++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 47899999999999999888888764 444544443
No 407
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.93 E-value=0.012 Score=55.75 Aligned_cols=138 Identities=13% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCce---EEeccCccccC---CC------C-----ChHHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESG---NA------G-----EPAKLIRQRYREAADI 117 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~---i~vs~s~l~s~---~~------G-----e~~~~ir~~F~~A~~~ 117 (375)
-.+.|-.+.+.|++|||||+++..+...+.-.+ +.++. ..... ++ + +.+..+...-....+.
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY 87 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence 456677789999999999999999988765422 22322 22111 11 0 1111111111111111
Q ss_pred HH------hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 118 IK------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 118 ~~------~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
.+ ...+++|+|||+-. . ...++.+.+++ . ....-++-+|.++.....|
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~---~-------~~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~l 141 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGD---K-------KLKSKILRQFF----N------------NGRHYNISIIFLSQSYFHL 141 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCC---c-------hhhhHHHHHHH----h------------cccccceEEEEEeeecccC
Confidence 12 13478999999721 0 01123333333 1 1233568899999999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhc
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIF 221 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l 221 (375)
|+.++. -.+.++. .-+..+...|++.+.
T Consensus 142 p~~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 142 PPNIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred CHHHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 998744 5666665 334555555555443
No 408
>PLN02459 probable adenylate kinase
Probab=96.92 E-value=0.0012 Score=63.45 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
.|..++|.||||+|||++|+.+|+.+|+. .++.+++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdl 63 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDL 63 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHH
Confidence 34458888999999999999999999864 4454444
No 409
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.92 E-value=0.0069 Score=62.09 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
.+|..++|.||+|+|||+++..+|..+ |..+..+++-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 347889999999999999999999876 6666666653
No 410
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0028 Score=56.48 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 94 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~ 94 (375)
.+..+.|.|+||+|||++|++++..+ |..+..+++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45688999999999999999999987 43455565543
No 411
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.91 E-value=0.0016 Score=64.31 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC-----CceEEe-ccCcccc---CC---CCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMM-SAGELES---GN---AGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg-----~~~i~v-s~s~l~s---~~---~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
..+.+++.||+|+|||+++++++.+.- ..++.+ ...++.- .+ ....+-...++++.+ -...|..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD~ 222 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPDR 222 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCCE
Confidence 456899999999999999999998741 222221 2223310 00 001111234555555 6789999
Q ss_pred eeeccc
Q 017204 126 LMINDL 131 (375)
Q Consensus 126 L~iDEi 131 (375)
|++.|+
T Consensus 223 IivGEi 228 (319)
T PRK13894 223 ILVGEV 228 (319)
T ss_pred EEEecc
Confidence 999999
No 412
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.91 E-value=0.0073 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~ 81 (375)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999864
No 413
>PRK12338 hypothetical protein; Provisional
Probab=96.91 E-value=0.00095 Score=65.76 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 88 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i 88 (375)
.|..|++.|+||+|||++|+++|..+|+..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999999998654
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.90 E-value=0.0094 Score=55.07 Aligned_cols=27 Identities=19% Similarity=-0.027 Sum_probs=22.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
..+....++|.||.|+|||++.+.++.
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334457799999999999999999873
No 415
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0045 Score=55.98 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcccc---CCCCCh----HHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES---GNAGEP----AKLIRQRYREA 114 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s---~~~Ge~----~~~ir~~F~~A 114 (375)
....|..|.|+|.+|+|||++|.++.+.| |.+.+.+++..+.. +..|=+ ..+||.+-..|
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 34567789999999999999999999985 88899999887743 334433 23555555555
No 416
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0071 Score=53.80 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|.+.++...
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45566789999999999999999999885
No 417
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.87 E-value=0.0047 Score=61.64 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CceEEeccCcc---------ccCCCCC--------------
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGEL---------ESGNAGE-------------- 102 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg---------~~~i~vs~s~l---------~s~~~Ge-------------- 102 (375)
|+.+...++++|+||+|||.+|..+|.... -..+.++..+- ...+--.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 677778899999999999999998874421 13455554331 0000000
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
....+..++..+..++....+.+|+||-|-++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr 232 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYR 232 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHH
Confidence 0111122333333444667899999999988754
No 418
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.86 E-value=0.00035 Score=64.64 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el 83 (375)
++++|+||+|||++.+.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999986
No 419
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.86 E-value=0.0063 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
|+..++.||.|+|||.+.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999986554
No 420
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0054 Score=61.99 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccC------CCC--------ChHHHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESG------NAG--------EPAKLIRQRYREAADII 118 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~------~~G--------e~~~~ir~~F~~A~~~~ 118 (375)
|+-+..-+|+-|.||.|||+|.-.+|..+-. ..+++++.+-... ..| -.+.++..+.+..
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----
Confidence 4555567888999999999999888887632 6888888754322 112 1244455555555
Q ss_pred HhCCceeeeecccccccCCCCCCccc-chhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh-hc
Q 017204 119 KKGKMCCLMINDLDAGAGRMGGTTQY-TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LI 196 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~r~~~~~~-~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A-Ll 196 (375)
.+.+|.+++||-|-.+....-++... -...+.....|+++.. ...--+++++---....|--+ ++
T Consensus 165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK-------------~~~i~~fiVGHVTKeG~IAGPrvL 231 (456)
T COG1066 165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK-------------TKNIAIFIVGHVTKEGAIAGPRVL 231 (456)
T ss_pred HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH-------------HcCCeEEEEEEEcccccccCchhe
Confidence 78999999999998876544212222 2234566667766655 233334555554444444333 33
Q ss_pred CCCcceEEEe-CCCHHHHHHhhhhhc
Q 017204 197 RDGRMEKFYW-APTREDRIGVCKGIF 221 (375)
Q Consensus 197 R~gRfd~~i~-~P~~~~R~~Il~~~l 221 (375)
-+-.|-.+| .-++....+|++.+-
T Consensus 232 -EHmVDtVlyFEGd~~~~~RiLR~vK 256 (456)
T COG1066 232 -EHMVDTVLYFEGDRHSRYRILRSVK 256 (456)
T ss_pred -eeeeeEEEEEeccCCCceeeeehhc
Confidence 244555555 566677777776554
No 421
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.85 E-value=0.0079 Score=61.92 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 458899999999999999999998876 5556655544
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.84 E-value=0.0051 Score=55.99 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
++...+.|.||+|+|||+|++.++..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999876
No 423
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.84 E-value=0.0095 Score=60.61 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=48.4
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeee
Q 017204 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127 (375)
Q Consensus 48 k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~ 127 (375)
..+.......++ .++|+||-+||||++.+.+.+...-.++.++.-++...... +.+.+....++ .......||
T Consensus 27 ~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-----l~d~~~~~~~~-~~~~~~yif 99 (398)
T COG1373 27 PRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-----LLDLLRAYIEL-KEREKSYIF 99 (398)
T ss_pred HHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-----HHHHHHHHHHh-hccCCceEE
Confidence 333334455555 89999999999999998888876555566655554432221 12222222111 222557999
Q ss_pred ecccccc
Q 017204 128 INDLDAG 134 (375)
Q Consensus 128 iDEiD~i 134 (375)
||||...
T Consensus 100 LDEIq~v 106 (398)
T COG1373 100 LDEIQNV 106 (398)
T ss_pred EecccCc
Confidence 9999643
No 424
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.83 E-value=0.0078 Score=53.83 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45566789999999999999999999874
No 425
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.0016 Score=61.94 Aligned_cols=52 Identities=27% Similarity=0.474 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhh---CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 38 FMDKLVVHITKNFMS---LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 38 ~~d~~~~~~~k~~l~---~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
++++.-...++.|+- ..+.+.|..+||=|+||+|||++|.-+|..+|+..+.
T Consensus 65 l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi 119 (299)
T COG2074 65 LLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI 119 (299)
T ss_pred HHHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee
Confidence 344555556677764 3477789999999999999999999999999997544
No 426
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.82 E-value=0.0025 Score=69.21 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+++..-+.+.|++|||||+|+|.+..-
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4444455999999999999999999876
No 427
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.82 E-value=0.0015 Score=60.77 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~ 99 (375)
.++|+||+|||||.+|-++|++.|.+++..+.-......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 578999999999999999999999999998877666543
No 428
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.0056 Score=55.35 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=43.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCcc--ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l--~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.+++...+.|.||.|+|||+|.+.++..... .-+.+.+..+ ......-+.. -++...-|.. -...|.++++||
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~lara--l~~~p~lllLDE 97 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAA--LLRNATFYLFDE 97 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHH--HhcCCCEEEEEC
Confidence 4456678999999999999999999986422 2233332111 1111101111 1233333311 466899999999
Q ss_pred ccc
Q 017204 131 LDA 133 (375)
Q Consensus 131 iD~ 133 (375)
--+
T Consensus 98 Pts 100 (177)
T cd03222 98 PSA 100 (177)
T ss_pred Ccc
Confidence 754
No 429
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.016 Score=56.32 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.4
Q ss_pred hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 50 ~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
++.......|..|.|+|+=|+|||++.+.+-+++.-.
T Consensus 11 ~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 11 IIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3334455789999999999999999999999887655
No 430
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.80 E-value=0.0048 Score=60.88 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.|+++...+.++||||+|||+++..+|..
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 37788888999999999999999988763
No 431
>PLN02199 shikimate kinase
Probab=96.78 E-value=0.0026 Score=62.04 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 457999999999999999999999999998865
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0051 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+.+...+.|.||+|+|||+|.+.++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455679999999999999999999864
No 433
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00079 Score=68.98 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 35 APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 35 ~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.|.|......+|.-+... ..-..++||+||||||||++|+-+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA-AAGgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA-AAGGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH-HhcCCcEEEecCCCCchHHhhhhhccc
Confidence 56788999888888876421 111247999999999999999987654
No 434
>PRK13975 thymidylate kinase; Provisional
Probab=96.78 E-value=0.0025 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
+-|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5688999999999999999999998643
No 435
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.78 E-value=0.0022 Score=63.74 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=45.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEe-ccCcccc------------C-CCCChHHHHHHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELES------------G-NAGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~v-s~s~l~s------------~-~~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
+..+.+|+.||+|+|||++.+++..+..- .++.+ ...++.- . ..|...-...++.+.+ ..
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR 233 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LR 233 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hc
Confidence 44567999999999999999999998653 22222 1112210 0 0122222234455555 68
Q ss_pred CCceeeeeccc
Q 017204 121 GKMCCLMINDL 131 (375)
Q Consensus 121 ~~p~IL~iDEi 131 (375)
..|..|++.|+
T Consensus 234 ~~PD~IivGEi 244 (332)
T PRK13900 234 LRPDRIIVGEL 244 (332)
T ss_pred cCCCeEEEEec
Confidence 88999999999
No 436
>PRK10867 signal recognition particle protein; Provisional
Probab=96.78 E-value=0.01 Score=60.98 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s 93 (375)
.+|..+++.||+|+|||+++..+|..+ |..+..+++-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 458899999999999999888777754 5666666554
No 437
>PRK14529 adenylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=62.09 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
-|+|.||||+|||++|+.||+.+++.. ++.+++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhh
Confidence 378899999999999999999998765 444555433
No 438
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.76 E-value=0.0037 Score=54.29 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=43.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccCCCC-ChH-HHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAG-EPA-KLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~~~G-e~~-~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
.+++...+.|.||+|+|||+|.++++..... .-+.+.+..-. .|+- -+. ..-+-.+.+| -..+|.++++||
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~~~~~lS~G~~~rv~lara----l~~~p~illlDE 96 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKL----LLENPNLLLLDE 96 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-EEEccCCHHHHHHHHHHHH----HhcCCCEEEEeC
Confidence 4556678999999999999999999987532 11222111000 0000 111 1111222333 466899999999
Q ss_pred cccc
Q 017204 131 LDAG 134 (375)
Q Consensus 131 iD~i 134 (375)
-.+.
T Consensus 97 P~~~ 100 (144)
T cd03221 97 PTNH 100 (144)
T ss_pred CccC
Confidence 7543
No 439
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.75 E-value=0.046 Score=60.60 Aligned_cols=34 Identities=18% Similarity=-0.048 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
...+-++++||+|.|||+++...+...+ .+.-++
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 3456799999999999999999887766 444433
No 440
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.74 E-value=0.0068 Score=58.53 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
..|+.++|.||||+|||+++..+|..+ |..+..+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457889999999999999999888775 445555544
No 441
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.74 E-value=0.0019 Score=59.21 Aligned_cols=28 Identities=39% Similarity=0.852 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..|..|.|.||||||||+|+++|+..++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577899999999999999999999984
No 442
>PRK05439 pantothenate kinase; Provisional
Probab=96.74 E-value=0.0021 Score=63.26 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=32.1
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 46 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 46 ~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..+.|+.....+.|..|.+.|+||+|||++|+.++..++
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566555777889999999999999999999998765
No 443
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0044 Score=68.30 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=91.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHH-hCCceee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL 126 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~IL 126 (375)
+.-+|.|.||+|||.++.-+|+.. +..++.++-+.+. .++-|+-+..++.+.+++ . .+...||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence 556899999999999999999883 3345555555443 456788888888888887 5 5567899
Q ss_pred eecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-C----CCCCChhhcCCCcc
Q 017204 127 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-D----FSTLYAPLIRDGRM 201 (375)
Q Consensus 127 ~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN-~----~~~Ld~ALlR~gRf 201 (375)
||||+.-+.+.... +. ....++ .|..++ ..+++-+|+||- . --.-||+|-| ||
T Consensus 285 figelh~lvg~g~~---~~-~~d~~n-lLkp~L---------------~rg~l~~IGatT~e~Y~k~iekdPalEr--rw 342 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN---YG-AIDAAN-LLKPLL---------------ARGGLWCIGATTLETYRKCIEKDPALER--RW 342 (898)
T ss_pred EecceeeeecCCCc---ch-HHHHHH-hhHHHH---------------hcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence 99999988776542 11 111111 121111 123366777664 2 2356899998 99
Q ss_pred eEEEe-CCCHHHHHHhhhhhc
Q 017204 202 EKFYW-APTREDRIGVCKGIF 221 (375)
Q Consensus 202 d~~i~-~P~~~~R~~Il~~~l 221 (375)
+.+.. .|+.++-..|+....
T Consensus 343 ~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 343 QLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred ceeEeccCcccchhhhhhhhh
Confidence 98888 899887666655443
No 444
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.73 E-value=0.014 Score=51.94 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|.+.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34455679999999999999999999874
No 445
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0028 Score=58.71 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCC
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
|+|+|+||+|||++|+.+|+++.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999999853
No 446
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.73 E-value=0.0088 Score=53.65 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|.+.++...
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44566789999999999999999999874
No 447
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.72 E-value=0.0059 Score=59.66 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
+..+..+.++|+|+.|+|||++.+.|.+-+|-..+.+..+...+.. ++ ..|..| .-....++++||++.
T Consensus 71 ~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~f~~a----~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 71 GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HRFGLA----RLEGKRAVIGDEVQK 139 (304)
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CCchhh----hhcCCEEEEecCCCC
Confidence 3466778999999999999999999999888765443333323221 11 134444 434456888999974
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.69 E-value=0.0068 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
+.|.||+|+|||+|++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999986544
No 449
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.69 E-value=0.0054 Score=56.21 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCceEE---eccC----cc--cc--------------CCCC----ChHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM---GINPIM---MSAG----EL--ES--------------GNAG----EPAKLIRQ 109 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el---g~~~i~---vs~s----~l--~s--------------~~~G----e~~~~ir~ 109 (375)
-.|.+||++|.|||+.|-.+|-.. |..+.. +++. +. .. .|.. +.....+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 357899999999999999887762 333322 2222 11 00 0111 12356777
Q ss_pred HHHHHHHHHHhCCceeeeeccccc
Q 017204 110 RYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 110 ~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.|+.|.+.+....-.+|++|||-.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhH
Confidence 888888888888899999999843
No 450
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.69 E-value=0.0079 Score=63.80 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+++..-+|+.||+|||||+|.|+||.-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5566678999999999999999999986
No 451
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.68 E-value=0.0027 Score=63.34 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.68 E-value=0.0031 Score=64.14 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+-|.|.|++|||||+|++++|..+|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4679999999999999999999999887554
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.66 E-value=0.009 Score=62.29 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e----lg~~~i~vs~ 92 (375)
.|++....+|+.||||||||++|..++.+ .|-+.+.++.
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 48888899999999999999999987544 2556655553
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.62 E-value=0.0028 Score=60.92 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=42.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC---CceEEec-cCccccCC-----CCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMS-AGELESGN-----AGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs-~s~l~s~~-----~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.+++.||+|+|||++.+++..++. ..++.+. ..++.-.. +.+. ....|..+...+-...|.+|+|+|+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~---~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEK---AGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCc---CCcCHHHHHHHHhccCCCEEEeccC
Confidence 489999999999999999987764 2344432 22221111 1110 0112444433346788999999999
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.015 Score=54.58 Aligned_cols=26 Identities=23% Similarity=-0.059 Sum_probs=22.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
+.....++|.||.|+|||++.+.++.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556789999999999999999887
No 456
>PF14516 AAA_35: AAA-like domain
Probab=96.62 E-value=0.016 Score=57.45 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 96 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~ 96 (375)
+..-+.++||..+|||++...+.+.+ |...+.++...+.
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 34578999999999999999887665 6667777766553
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.61 E-value=0.0021 Score=58.09 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=25.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..+.|.||+|+|||++++.++..++..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999988765433
No 458
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.60 E-value=0.0071 Score=54.58 Aligned_cols=72 Identities=13% Similarity=0.251 Sum_probs=48.1
Q ss_pred EEEEcCCCchHHHHHHHHHHH---hCCceEE---ecc----Ccccc---------------CCCC----ChHHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVFAK---MGINPIM---MSA----GELES---------------GNAG----EPAKLIRQRYR 112 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~e---lg~~~i~---vs~----s~l~s---------------~~~G----e~~~~ir~~F~ 112 (375)
|.+|+++|.|||+.|-.+|-. .|..++. +++ ++... .|.. +..+..+..++
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 87 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQ 87 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHH
Confidence 568899999999999988776 3554433 232 22100 0111 12355777888
Q ss_pred HHHHHHHhCCceeeeeccccc
Q 017204 113 EAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.|.+.+....-.+|++|||-.
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHH
Confidence 888888888899999999843
No 459
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0058 Score=60.73 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..--+.|.||+|||||++.+.||.-.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999763
No 460
>PTZ00202 tuzin; Provisional
Probab=96.60 E-value=0.015 Score=59.81 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=35.0
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC
Q 017204 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93 (375)
Q Consensus 48 k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s 93 (375)
+..+.......|+.+.|.||+|||||++++.+...++...+.++..
T Consensus 275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 4444445666778999999999999999999999988655544433
No 461
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.58 E-value=0.0019 Score=58.82 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.|.+.||||+|||++|+.++..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3789999999999999999999973
No 462
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.013 Score=56.88 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----C-CceEEeccC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAG 93 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----g-~~~i~vs~s 93 (375)
.+..++|.||+|+|||+++..+|..+ | ..+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 46789999999999999999998875 3 455555544
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.55 E-value=0.0054 Score=63.94 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC------CCC----------------------C
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAG----------------------E 102 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~------~~G----------------------e 102 (375)
.|+.+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+. ..| .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 478888899999999999999999888864 555566554322111 011 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.+..+..+. +.+....|.+|+||-+-.+..
T Consensus 338 ~~~~~~~i~----~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIK----SEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHH----HHHHHcCCCEEEEcCHHHHHH
Confidence 123333333 334778899999999876643
No 464
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.55 E-value=0.022 Score=57.10 Aligned_cols=92 Identities=15% Similarity=0.292 Sum_probs=59.2
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc---------------CCCCChHHH--
Q 017204 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGEPAKL-- 106 (375)
Q Consensus 44 ~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s---------------~~~Ge~~~~-- 106 (375)
....+.++....-..|..+.|||-.|||||.+.+.+-++++.+.+.+++-+... ...|...+.
T Consensus 15 i~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~ 94 (438)
T KOG2543|consen 15 IRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDA 94 (438)
T ss_pred HHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHH
Confidence 344455554444478999999999999999999999999999888877654421 112221111
Q ss_pred -----HHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 107 -----IRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 107 -----ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
+...|....++-+..+...|++|.+|.+.
T Consensus 95 en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 95 ENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 12223332112223457789999999886
No 465
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.55 E-value=0.0078 Score=57.59 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=50.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CceEEeccCc-c--------ccCCCCChH-----------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGE-L--------ESGNAGEPA----------- 104 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---------~~~i~vs~s~-l--------~s~~~Ge~~----------- 104 (375)
.|++.....=|+||||+|||.||..+|-... ...++++... + ...+.-+..
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 5777777777999999999999998886643 2355554332 1 111111110
Q ss_pred ---HHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 105 ---KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 105 ---~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..+..+.......+...+-.+|+||-|-++..
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 11122333333444567788999999988864
No 466
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0073 Score=64.73 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..++|.+.+-|.||+|.|||++|..+-+-
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778889999999999999999998766
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.53 E-value=0.0033 Score=62.74 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEec-cCcccc--C----------CCCChHHHHHHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES--G----------NAGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs-~s~l~s--~----------~~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
++..+.+|+.||+|+|||+++++++..... ..+.+. ..++.- . ..|...-....+++.+ -.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR 234 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LR 234 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hc
Confidence 345567999999999999999999998643 222221 112210 0 0111112233455544 67
Q ss_pred CCceeeeeccc
Q 017204 121 GKMCCLMINDL 131 (375)
Q Consensus 121 ~~p~IL~iDEi 131 (375)
..|..|++.|+
T Consensus 235 ~~pD~IivGEi 245 (344)
T PRK13851 235 MRPDRILLGEM 245 (344)
T ss_pred CCCCeEEEEee
Confidence 78999999998
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.52 E-value=0.0023 Score=57.07 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.++|.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998764
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.52 E-value=0.0023 Score=58.82 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.+..|.|.||+|+|||+|+++++..++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456779999999999999999998763
No 470
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.52 E-value=0.0026 Score=57.18 Aligned_cols=28 Identities=39% Similarity=0.597 Sum_probs=24.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
|+|+|+||+|||++++.+++ +|++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 78999999999999999998 77665543
No 471
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.51 E-value=0.0042 Score=60.58 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=30.8
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 47 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 47 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+.|+.....+.|..|.|.||+|+|||++|+.+...+.
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555555567889999999999999999999887764
No 472
>PRK13808 adenylate kinase; Provisional
Probab=96.50 E-value=0.0024 Score=63.40 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
|+|+||||+|||++++.||..+|+. .++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 8899999999999999999999764 45545444
No 473
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.50 E-value=0.0034 Score=66.25 Aligned_cols=139 Identities=20% Similarity=0.259 Sum_probs=76.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEe----ccCcc-----ccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGEL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~v----s~s~l-----~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDE 130 (375)
-.||+.|-||||||-+.+++++-+-...+.. +++-| .+.-.|+. .++ | ..+--....|--|||
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf------~iE-A-GALmLADnGICCIDE 450 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDF------TIE-A-GALMLADNGICCIDE 450 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCce------eee-c-CcEEEccCceEEech
Confidence 4699999999999999999998765543331 11111 11111211 011 1 011234456888999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhcC
Q 017204 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 197 (375)
Q Consensus 131 iD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR 197 (375)
+|++.-+. +...-..+-+|++ .+.--|. ...-+.|--||+++|-.. .+++||+.
T Consensus 451 FDKMd~~d----qvAihEAMEQQtI--------SIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS 517 (764)
T KOG0480|consen 451 FDKMDVKD----QVAIHEAMEQQTI--------SIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS 517 (764)
T ss_pred hcccChHh----HHHHHHHHHhhee--------hheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh
Confidence 99985532 2111122222222 0000111 112345567899998532 58899996
Q ss_pred CCcceEEEe---CCCHHHHHHhhhhhc
Q 017204 198 DGRMEKFYW---APTREDRIGVCKGIF 221 (375)
Q Consensus 198 ~gRfd~~i~---~P~~~~R~~Il~~~l 221 (375)
|||.++. -|++..=..|-+.++
T Consensus 518 --RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 518 --RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred --hhcEEEEEecCCchHHHHHHHHHHH
Confidence 9998887 477766555544443
No 474
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.49 E-value=0.013 Score=67.04 Aligned_cols=175 Identities=11% Similarity=0.129 Sum_probs=99.7
Q ss_pred CCCCcEEEEEcCCCchHHHH-HHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHh-----------CCc
Q 017204 56 IKVPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-----------GKM 123 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~L-A~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~-----------~~p 123 (375)
+..-++++++||||+|||+| +-++-.++-..++.++-+.-. .++..+ ...++--+.... -+.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKL-SVLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHH-HHHHhhceeeccCCeEEEccCcchhh
Confidence 34567999999999999996 567778777777776654322 112222 222221011111 112
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCCCC-----Ch
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFSTL-----YA 193 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-----~~~~V~VI~TTN~~~~L-----d~ 193 (375)
-|||.|||. +-..+.-..+ ++ .-+|..++ .-+|+|... ...+++|.+++|.+.+. +.
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~-~v-----I~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPP-TV-----IVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred eEEEeeccC-CccccccCCC-ce-----EEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence 489999998 4322221111 00 01111111 223666542 34788999999976543 34
Q ss_pred hhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHHHHHHHhh
Q 017204 194 PLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 252 (375)
Q Consensus 194 ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~~~al~~~ 252 (375)
-++| --.+++ -|.......|..+++...-+-..+..++++.+..+...++-..|++
T Consensus 1632 Rf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245 1632 RFIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred HHhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4554 223444 7999999999887776654555555666666666666666555553
No 475
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.48 E-value=0.0029 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
+....|+|+|+=|+|||+++|.+++.+|..-...|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S 47 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS 47 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence 55578999999999999999999999998653333
No 476
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.47 E-value=0.06 Score=62.69 Aligned_cols=158 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc--cCCCCCh-----HH--HHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEP-----AK--LIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~--s~~~Ge~-----~~--~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
+||.||.-+|||++..-+|.++|-.|+.++..+=. ..|+|.. ++ .-..+.-.| +++ .--|++||+.
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeA---lR~--GyWIVLDELN 965 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEA---LRR--GYWIVLDELN 965 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHH---Hhc--CcEEEeeccc
Confidence 89999999999999999999999999999876542 2344421 10 001122222 233 3478899995
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCC------CCChhhcCCCcceEEE
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------TLYAPLIRDGRMEKFY 205 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~~------~Ld~ALlR~gRfd~~i 205 (375)
-. + .-|-..|..+||+-.-.-+++-... .+.+...+.+|-|.|. -|..|++- ||-...
T Consensus 966 LA-p------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE~h 1030 (4600)
T COG5271 966 LA-P------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLEMH 1030 (4600)
T ss_pred cC-c------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHhhh
Confidence 32 2 1234566667774433333433222 2345556666767543 34555543 554433
Q ss_pred e--CCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhH
Q 017204 206 W--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243 (375)
Q Consensus 206 ~--~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl 243 (375)
+ +| +++...|++.-. .+.+.--.++++-|.+-.+
T Consensus 1031 Fddip-edEle~ILh~rc---~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271 1031 FDDIP-EDELEEILHGRC---EIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred cccCc-HHHHHHHHhccC---ccCHHHHHHHHHHHHHhhh
Confidence 3 44 445566665433 4555555666666655444
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.46 E-value=0.0022 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
+.++|.||+|+|||++++.++.....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997654
No 478
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.45 E-value=0.0033 Score=58.70 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..|.|.||+|||||++++.+|+++++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 468899999999999999999999987664
No 479
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.45 E-value=0.01 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
...-.+++||||+|||+++..++..+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33458899999999999999888874
No 480
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.44 E-value=0.0028 Score=57.86 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCceEE
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM-GINPIM 89 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el-g~~~i~ 89 (375)
|.+.|+||+|||++|+.+++.+ ++.++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~ 30 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIH 30 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEc
Confidence 6789999999999999999998 444443
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.43 E-value=0.0035 Score=56.52 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=26.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
..+.|.||+|+|||+++++++..++.. .+++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~ 36 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDD 36 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCcc
Confidence 468899999999999999999998763 344443
No 482
>PRK08356 hypothetical protein; Provisional
Probab=96.43 E-value=0.0036 Score=57.06 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
..++|.||||+|||++|+.+. +.|+. .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 468899999999999999995 46665 455444
No 483
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.0078 Score=57.09 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+...--+-|.||+|||||+|.+.||.-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444568899999999999999999874
No 484
>PLN02165 adenylate isopentenyltransferase
Probab=96.41 E-value=0.0034 Score=62.22 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
+..+.|.||+|+|||+||..+|..++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 447899999999999999999999987666544
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.40 E-value=0.079 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 017204 62 LGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~e 82 (375)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999988865
No 486
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.40 E-value=0.017 Score=61.33 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++..-+.|.||+|+|||+|++.++...
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45566779999999999999999998875
No 487
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.39 E-value=0.0038 Score=61.33 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
.++.+++.||+|+|||++|..+|++++..++..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35689999999999999999999999887666544
No 488
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.38 E-value=0.013 Score=62.30 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|++.++...
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45566789999999999999999999874
No 489
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.38 E-value=0.0038 Score=56.34 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC---CceEEeccCcc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 95 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l 95 (375)
|++.|+||+|||++|+.++..++ .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 78999999999999999999974 44455554433
No 490
>COG0645 Predicted kinase [General function prediction only]
Probab=96.37 E-value=0.011 Score=53.06 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=42.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEec-------c-Ccccc----CC-CCChHHHHHHHHHHHHHHHHhCCcee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------A-GELES----GN-AGEPAKLIRQRYREAADIIKKGKMCC 125 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs-------~-s~l~s----~~-~Ge~~~~ir~~F~~A~~~~~~~~p~I 125 (375)
+.+|++|-||+|||++|+.++..+|.-.+..+ + ++... -| .+.+.+--..++..|..++..+.+.|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 56899999999999999999999998666522 2 00000 01 11233444556666766666777654
No 491
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.37 E-value=0.0069 Score=60.78 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..|..+.+.||.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 56678999999999999999999888744
No 492
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.37 E-value=0.0074 Score=63.47 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=40.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
..|.-|++.|+||+|||++|+.++...|+. .++...+ |. -......|.+.++.+.+.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEEE
Confidence 467889999999999999999999987754 4444333 21 22344556566667766443
No 493
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.36 E-value=0.018 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
-..++||.|+|||.+..||+-.++..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~ 49 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK 49 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc
Confidence 57799999999999999998887643
No 494
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=58.86 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
+..|.+.||||+|||++++.+|+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578899999999999999999999987654
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.36 E-value=0.0052 Score=58.49 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
.|++....+|++|+||||||.++...+.+. |.+.+.++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 578888899999999999999999877762 5566666644
No 496
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.36 E-value=0.0039 Score=57.15 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|.|+|++|+|||++++.+++.+|++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 58899999999999999999988887664
No 497
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.35 E-value=0.0049 Score=65.17 Aligned_cols=32 Identities=22% Similarity=0.043 Sum_probs=29.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
-|.|.|+||+|||++++.+|+.+|++|+.++.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 57889999999999999999999999998774
No 498
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.34 E-value=0.03 Score=57.53 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 93 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s 93 (375)
.|..+++.||||+|||+++..+|..+ |..+..+++-
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 47899999999999999988887763 4556655544
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.34 E-value=0.015 Score=57.38 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
..|..++|.||+|+|||+++..+|..+ |..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 357889999999999999999999886 334444443
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.33 E-value=0.0036 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|+.+.|.||||+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57789999999999999999998876
Done!