Query 017204
Match_columns 375
No_of_seqs 356 out of 2526
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 2.5E-55 8.7E-60 423.2 22.6 292 24-315 1-292 (293)
2 4b4t_J 26S protease regulatory 100.0 5.2E-43 1.8E-47 350.1 21.8 209 22-246 144-361 (405)
3 4b4t_I 26S protease regulatory 100.0 7.4E-42 2.5E-46 343.3 21.1 209 22-246 178-395 (437)
4 4b4t_M 26S protease regulatory 100.0 1.3E-41 4.6E-46 343.7 20.5 210 23-246 178-394 (434)
5 4b4t_H 26S protease regulatory 100.0 2.1E-41 7.1E-46 342.8 21.7 211 22-246 205-422 (467)
6 4b4t_L 26S protease subunit RP 100.0 2.5E-41 8.7E-46 341.9 22.0 209 22-246 177-394 (437)
7 4b4t_K 26S protease regulatory 100.0 1.1E-39 3.6E-44 329.5 20.5 208 23-246 169-386 (428)
8 3cf2_A TER ATPase, transitiona 100.0 1.5E-39 5E-44 349.7 7.9 193 53-264 505-705 (806)
9 3cf2_A TER ATPase, transitiona 100.0 2.2E-35 7.5E-40 317.3 22.4 224 21-264 199-429 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.9E-31 1E-35 258.6 23.8 222 22-264 8-237 (322)
11 3eie_A Vacuolar protein sortin 100.0 4.2E-31 1.4E-35 256.7 19.8 226 19-265 11-243 (322)
12 2x8a_A Nuclear valosin-contain 100.0 7E-31 2.4E-35 250.6 17.9 246 22-300 6-263 (274)
13 3cf0_A Transitional endoplasmi 100.0 7.1E-31 2.4E-35 253.0 17.0 210 21-246 10-228 (301)
14 2ce7_A Cell division protein F 100.0 8E-31 2.7E-35 268.2 17.6 209 20-246 10-228 (476)
15 2qp9_X Vacuolar protein sortin 100.0 6.1E-30 2.1E-34 252.4 21.1 224 19-263 44-274 (355)
16 3h4m_A Proteasome-activating n 100.0 2.5E-28 8.5E-33 231.3 20.6 213 19-245 10-229 (285)
17 2zan_A Vacuolar protein sortin 100.0 6.5E-29 2.2E-33 252.1 17.6 224 20-264 128-359 (444)
18 1lv7_A FTSH; alpha/beta domain 100.0 3.8E-28 1.3E-32 227.5 20.8 210 19-245 5-223 (257)
19 2dhr_A FTSH; AAA+ protein, hex 100.0 3.3E-29 1.1E-33 257.7 13.5 209 21-246 26-243 (499)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.2E-28 4.2E-33 229.8 15.2 205 24-245 4-220 (262)
21 3hu3_A Transitional endoplasmi 100.0 1.2E-27 4.1E-32 245.7 17.2 175 54-245 233-413 (489)
22 1ixz_A ATP-dependent metallopr 99.9 1.3E-26 4.4E-31 216.7 16.7 211 19-245 9-227 (254)
23 3d8b_A Fidgetin-like protein 1 99.9 1.3E-26 4.5E-31 228.5 17.4 209 21-246 79-294 (357)
24 3b9p_A CG5977-PA, isoform A; A 99.9 1.4E-26 4.9E-31 220.7 17.1 209 21-245 16-231 (297)
25 1ypw_A Transitional endoplasmi 99.9 1.4E-28 4.7E-33 266.4 3.3 178 53-246 505-690 (806)
26 2r62_A Cell division protease 99.9 4.4E-28 1.5E-32 227.9 4.7 210 20-245 5-224 (268)
27 3vfd_A Spastin; ATPase, microt 99.9 3.1E-26 1E-30 227.9 17.6 209 21-246 110-325 (389)
28 1iy2_A ATP-dependent metallopr 99.9 1.8E-25 6.1E-30 212.2 18.4 209 21-245 35-251 (278)
29 1ypw_A Transitional endoplasmi 99.9 2.5E-23 8.7E-28 225.2 23.0 210 20-246 198-414 (806)
30 3thg_A Ribulose bisphosphate c 99.9 7.1E-24 2.4E-28 170.8 8.2 104 207-310 4-107 (107)
31 2c9o_A RUVB-like 1; hexameric 99.9 7.1E-25 2.4E-29 222.9 -3.6 175 55-246 59-259 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 5.8E-20 2E-24 173.3 12.5 170 48-238 53-229 (272)
33 3syl_A Protein CBBX; photosynt 99.8 1.5E-18 5E-23 165.7 17.4 151 56-232 64-230 (309)
34 1g41_A Heat shock protein HSLU 99.8 2.5E-19 8.5E-24 181.4 7.4 135 57-217 48-188 (444)
35 3m6a_A ATP-dependent protease 99.8 2.2E-18 7.6E-23 178.9 14.0 167 58-240 107-297 (543)
36 3hws_A ATP-dependent CLP prote 99.7 3E-18 1E-22 168.5 7.1 160 57-219 49-267 (363)
37 1ofh_A ATP-dependent HSL prote 99.7 1.3E-17 4.4E-22 158.4 10.9 157 57-219 48-213 (310)
38 3uk6_A RUVB-like 2; hexameric 99.7 1.2E-16 4.2E-21 156.0 17.8 148 55-230 66-283 (368)
39 1jbk_A CLPB protein; beta barr 99.7 3.9E-17 1.3E-21 142.5 8.7 137 57-218 41-195 (195)
40 3pfi_A Holliday junction ATP-d 99.7 9.6E-16 3.3E-20 148.3 16.6 157 57-240 53-218 (338)
41 1l8q_A Chromosomal replication 99.6 1.2E-15 4.1E-20 147.2 11.0 181 22-238 7-198 (324)
42 1hqc_A RUVB; extended AAA-ATPa 99.6 1.9E-15 6.6E-20 144.7 12.2 154 57-236 36-198 (324)
43 2p65_A Hypothetical protein PF 99.6 1.2E-15 4.2E-20 133.0 8.0 127 57-209 41-187 (187)
44 1um8_A ATP-dependent CLP prote 99.6 3.8E-15 1.3E-19 146.8 10.9 139 57-197 70-220 (376)
45 4fcw_A Chaperone protein CLPB; 99.6 3.2E-14 1.1E-18 135.5 16.3 142 58-222 46-230 (311)
46 3u61_B DNA polymerase accessor 99.6 2.9E-15 1E-19 144.2 8.7 130 56-219 45-176 (324)
47 3pxg_A Negative regulator of g 99.6 5.4E-15 1.8E-19 150.7 11.0 143 57-240 199-366 (468)
48 3pvs_A Replication-associated 99.6 1.5E-14 5.2E-19 146.8 13.3 127 60-223 51-180 (447)
49 2z4s_A Chromosomal replication 99.6 7.7E-15 2.6E-19 148.5 10.1 162 44-236 117-293 (440)
50 3te6_A Regulatory protein SIR3 99.5 2.7E-14 9.3E-19 138.9 13.2 138 56-222 42-212 (318)
51 1qvr_A CLPB protein; coiled co 99.5 6.4E-15 2.2E-19 160.3 9.7 140 57-222 189-346 (854)
52 1r6b_X CLPA protein; AAA+, N-t 99.5 3E-14 1E-18 152.8 14.7 141 57-222 205-363 (758)
53 2chg_A Replication factor C sm 99.5 7.8E-14 2.7E-18 124.2 15.0 141 61-235 40-190 (226)
54 3pxi_A Negative regulator of g 99.5 1.5E-14 5.2E-19 155.3 11.0 126 57-223 199-340 (758)
55 1r6b_X CLPA protein; AAA+, N-t 99.5 6.9E-14 2.4E-18 150.0 15.6 142 60-222 489-667 (758)
56 3pxi_A Negative regulator of g 99.5 1.2E-13 4.3E-18 148.2 16.7 136 61-221 523-675 (758)
57 1sxj_A Activator 1 95 kDa subu 99.5 1.8E-14 6.2E-19 148.4 7.2 153 57-237 75-240 (516)
58 1njg_A DNA polymerase III subu 99.5 8.1E-14 2.8E-18 125.3 10.7 153 57-237 43-219 (250)
59 2qby_B CDC6 homolog 3, cell di 99.5 1.4E-13 4.7E-18 134.5 12.9 152 57-240 43-236 (384)
60 1sxj_B Activator 1 37 kDa subu 99.5 1.8E-13 6.3E-18 130.1 11.7 153 57-244 41-207 (323)
61 2v1u_A Cell division control p 99.5 2.2E-13 7.7E-18 132.4 12.4 154 57-236 42-236 (387)
62 2chq_A Replication factor C sm 99.5 4.2E-13 1.4E-17 127.4 13.4 145 62-240 41-195 (319)
63 1sxj_D Activator 1 41 kDa subu 99.5 2.8E-13 9.4E-18 130.9 11.8 145 62-240 61-229 (353)
64 1g8p_A Magnesium-chelatase 38 99.4 4.5E-14 1.5E-18 136.4 3.5 146 60-221 46-232 (350)
65 3bos_A Putative DNA replicatio 99.4 1.6E-12 5.6E-17 117.9 12.1 155 45-240 41-208 (242)
66 2r44_A Uncharacterized protein 99.4 8.2E-13 2.8E-17 127.5 9.6 141 60-223 47-200 (331)
67 1qvr_A CLPB protein; coiled co 99.4 3.4E-12 1.2E-16 138.9 14.9 143 60-222 589-771 (854)
68 2qby_A CDC6 homolog 1, cell di 99.4 9.9E-12 3.4E-16 120.5 16.5 154 57-236 43-232 (386)
69 1a5t_A Delta prime, HOLB; zinc 99.4 3.3E-12 1.1E-16 124.3 12.8 154 56-243 21-202 (334)
70 1iqp_A RFCS; clamp loader, ext 99.4 1.8E-12 6.2E-17 123.5 10.7 138 61-232 48-195 (327)
71 1jr3_A DNA polymerase III subu 99.4 1.5E-12 5.3E-17 126.5 9.8 150 57-240 36-215 (373)
72 2bjv_A PSP operon transcriptio 99.4 1.3E-13 4.3E-18 129.1 1.7 134 58-214 28-183 (265)
73 1in4_A RUVB, holliday junction 99.3 1.6E-11 5.4E-16 119.5 15.7 156 57-239 49-213 (334)
74 1fnn_A CDC6P, cell division co 99.3 1.1E-11 3.7E-16 120.9 14.4 149 61-236 46-228 (389)
75 3n70_A Transport activator; si 99.3 1.7E-12 5.9E-17 111.2 7.3 91 58-188 23-116 (145)
76 1sxj_E Activator 1 40 kDa subu 99.3 5.2E-12 1.8E-16 122.4 11.2 135 57-225 35-210 (354)
77 4akg_A Glutathione S-transfera 99.3 7.2E-12 2.5E-16 148.7 11.1 144 58-222 1266-1432(2695)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3.1E-12 1.1E-16 131.5 7.0 139 60-221 42-196 (500)
79 3f9v_A Minichromosome maintena 99.3 3.3E-13 1.1E-17 141.5 -1.5 138 61-223 329-492 (595)
80 1sxj_C Activator 1 40 kDa subu 99.3 5.6E-11 1.9E-15 115.4 14.3 139 57-230 45-193 (340)
81 3ec2_A DNA replication protein 99.3 2.7E-12 9.3E-17 113.1 4.5 102 20-134 4-112 (180)
82 3co5_A Putative two-component 99.2 1.1E-12 3.8E-17 112.2 1.4 91 58-188 26-116 (143)
83 1ojl_A Transcriptional regulat 99.2 1.2E-11 4.2E-16 119.0 8.3 133 57-214 23-179 (304)
84 2gno_A DNA polymerase III, gam 99.2 3.8E-11 1.3E-15 115.9 11.7 149 59-245 18-172 (305)
85 3cmw_A Protein RECA, recombina 99.2 7.7E-12 2.6E-16 143.2 6.5 115 58-189 1079-1219(1706)
86 2vhj_A Ntpase P4, P4; non- hyd 99.1 1.2E-10 3.9E-15 113.3 6.6 123 54-195 118-242 (331)
87 2w58_A DNAI, primosome compone 99.1 5.7E-10 1.9E-14 99.7 10.2 107 18-135 17-128 (202)
88 2kjq_A DNAA-related protein; s 99.0 1.2E-09 4.2E-14 94.3 7.7 59 58-135 35-96 (149)
89 2qgz_A Helicase loader, putati 98.9 3.2E-10 1.1E-14 109.4 4.3 85 44-134 137-226 (308)
90 1w5s_A Origin recognition comp 98.9 3.9E-09 1.3E-13 103.6 12.2 157 58-236 49-250 (412)
91 1svm_A Large T antigen; AAA+ f 98.9 3.1E-09 1E-13 105.5 9.9 123 54-212 164-287 (377)
92 1tue_A Replication protein E1; 98.8 1.5E-08 5E-13 92.6 9.9 128 44-206 45-176 (212)
93 2r2a_A Uncharacterized protein 98.7 3E-08 1E-12 89.9 9.0 122 58-206 4-149 (199)
94 3k1j_A LON protease, ATP-depen 98.7 4.4E-09 1.5E-13 110.2 3.7 26 60-85 61-86 (604)
95 3cmu_A Protein RECA, recombina 98.7 2.5E-08 8.5E-13 115.8 7.8 103 54-160 1422-1548(2050)
96 4akg_A Glutathione S-transfera 98.6 2.7E-07 9.3E-12 110.1 13.0 141 58-217 644-789 (2695)
97 2qen_A Walker-type ATPase; unk 98.5 1.1E-06 3.7E-11 83.8 12.6 158 60-241 32-241 (350)
98 1u0j_A DNA replication protein 98.4 1.1E-06 3.6E-11 83.2 11.6 41 43-85 89-130 (267)
99 2fna_A Conserved hypothetical 98.4 8.9E-06 3.1E-10 77.4 18.2 35 60-94 31-65 (357)
100 3vkg_A Dynein heavy chain, cyt 98.4 1E-07 3.5E-12 114.5 5.3 141 59-220 1304-1468(3245)
101 1ny5_A Transcriptional regulat 98.2 1.1E-06 3.6E-11 87.2 4.6 107 59-188 160-282 (387)
102 2cvh_A DNA repair and recombin 98.1 1.4E-05 4.9E-10 71.2 11.2 41 54-94 15-55 (220)
103 3cmu_A Protein RECA, recombina 98.1 5.7E-06 2E-10 96.3 9.3 82 55-136 728-824 (2050)
104 1qhx_A CPT, protein (chloramph 98.1 5.4E-06 1.9E-10 71.8 6.5 34 59-92 3-36 (178)
105 1ye8_A Protein THEP1, hypothet 98.1 3.3E-05 1.1E-09 68.3 11.6 27 61-87 2-28 (178)
106 3hr8_A Protein RECA; alpha and 98.0 1.3E-05 4.6E-10 78.7 9.6 83 54-136 56-153 (356)
107 3dzd_A Transcriptional regulat 98.0 5.5E-06 1.9E-10 81.6 6.0 107 60-187 153-272 (368)
108 3f8t_A Predicted ATPase involv 98.0 1.1E-06 3.7E-11 89.4 0.7 119 61-212 241-385 (506)
109 2zr9_A Protein RECA, recombina 98.0 1.4E-05 4.9E-10 78.2 8.7 83 54-136 56-153 (349)
110 1xp8_A RECA protein, recombina 98.0 2.8E-05 9.6E-10 76.7 10.3 83 54-136 69-166 (366)
111 3vkg_A Dynein heavy chain, cyt 97.9 4.3E-05 1.5E-09 92.3 12.9 139 60-217 605-749 (3245)
112 2p5t_B PEZT; postsegregational 97.9 6.6E-05 2.3E-09 69.6 11.2 56 40-95 12-68 (253)
113 1u94_A RECA protein, recombina 97.9 1.3E-05 4.5E-10 78.7 6.5 83 54-136 58-155 (356)
114 3cmw_A Protein RECA, recombina 97.9 2E-05 6.8E-10 90.8 8.2 83 54-136 727-824 (1706)
115 1n0w_A DNA repair protein RAD5 97.8 2.9E-05 9.8E-10 70.3 7.5 83 54-136 19-133 (243)
116 1gvn_B Zeta; postsegregational 97.8 3E-05 1E-09 73.7 7.6 62 35-96 8-70 (287)
117 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00011 3.7E-09 65.6 10.9 37 55-91 19-58 (235)
118 2z43_A DNA repair and recombin 97.8 3.1E-05 1.1E-09 74.6 7.3 83 54-136 102-217 (324)
119 3trf_A Shikimate kinase, SK; a 97.8 1.3E-05 4.6E-10 69.9 4.3 34 58-91 4-37 (185)
120 1jr3_D DNA polymerase III, del 97.8 0.00012 4.2E-09 70.4 11.5 147 57-240 16-176 (343)
121 2rhm_A Putative kinase; P-loop 97.8 1.9E-05 6.6E-10 69.0 5.1 35 55-89 1-35 (193)
122 3io5_A Recombination and repai 97.8 4.5E-05 1.5E-09 73.9 7.6 83 54-137 24-126 (333)
123 4a74_A DNA repair and recombin 97.8 4.5E-05 1.5E-09 68.4 7.2 30 54-83 20-49 (231)
124 2ehv_A Hypothetical protein PH 97.7 0.00015 5.1E-09 65.8 10.3 26 55-80 26-51 (251)
125 1pzn_A RAD51, DNA repair and r 97.7 7.5E-05 2.6E-09 72.9 8.4 82 54-135 126-244 (349)
126 3iij_A Coilin-interacting nucl 97.7 2.5E-05 8.4E-10 68.1 4.4 36 55-90 7-42 (180)
127 3kw6_A 26S protease regulatory 97.7 0.0001 3.5E-09 56.1 7.4 39 207-245 2-44 (78)
128 3vaa_A Shikimate kinase, SK; s 97.7 2.5E-05 8.4E-10 69.5 4.4 37 55-91 21-57 (199)
129 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 8.4E-05 2.9E-09 69.2 8.2 70 58-130 3-79 (260)
130 3lda_A DNA repair protein RAD5 97.7 9.8E-05 3.4E-09 73.6 9.1 83 54-136 173-287 (400)
131 3umf_A Adenylate kinase; rossm 97.6 3.9E-05 1.3E-09 70.3 5.0 41 53-95 23-63 (217)
132 2cdn_A Adenylate kinase; phosp 97.6 4.6E-05 1.6E-09 67.6 4.9 36 55-90 16-51 (201)
133 2krk_A 26S protease regulatory 97.6 0.00014 4.7E-09 56.9 7.0 40 207-246 10-53 (86)
134 2i1q_A DNA repair and recombin 97.6 0.0001 3.4E-09 70.7 7.1 83 54-136 93-218 (322)
135 3kb2_A SPBC2 prophage-derived 97.6 5.3E-05 1.8E-09 64.7 4.6 31 61-91 3-33 (173)
136 2iyv_A Shikimate kinase, SK; t 97.6 3.9E-05 1.3E-09 66.9 3.8 32 60-91 3-34 (184)
137 1tev_A UMP-CMP kinase; ploop, 97.6 5.7E-05 1.9E-09 65.8 4.6 31 59-89 3-33 (196)
138 1v5w_A DMC1, meiotic recombina 97.6 0.00014 4.6E-09 70.8 7.7 83 54-136 117-233 (343)
139 2c95_A Adenylate kinase 1; tra 97.5 5.3E-05 1.8E-09 66.3 4.1 33 58-90 8-40 (196)
140 1kag_A SKI, shikimate kinase I 97.5 6E-05 2.1E-09 64.8 4.4 31 59-89 4-34 (173)
141 1zp6_A Hypothetical protein AT 97.5 5E-05 1.7E-09 66.4 3.8 40 55-94 5-44 (191)
142 1y63_A LMAJ004144AAA protein; 97.5 5.2E-05 1.8E-09 66.6 3.9 34 58-91 9-43 (184)
143 1aky_A Adenylate kinase; ATP:A 97.5 6.8E-05 2.3E-09 67.5 4.8 34 57-90 2-35 (220)
144 1via_A Shikimate kinase; struc 97.5 6.4E-05 2.2E-09 65.2 4.1 29 61-89 6-34 (175)
145 1ly1_A Polynucleotide kinase; 97.5 5E-05 1.7E-09 65.4 3.4 28 59-86 2-30 (181)
146 1zuh_A Shikimate kinase; alpha 97.5 8.1E-05 2.8E-09 64.0 4.6 32 60-91 8-39 (168)
147 2vli_A Antibiotic resistance p 97.5 5.6E-05 1.9E-09 65.5 3.4 30 59-88 5-34 (183)
148 1zd8_A GTP:AMP phosphotransfer 97.5 5.9E-05 2E-09 68.3 3.7 34 57-90 5-38 (227)
149 1qf9_A UMP/CMP kinase, protein 97.5 9.6E-05 3.3E-09 64.2 4.9 33 58-90 5-37 (194)
150 3lw7_A Adenylate kinase relate 97.5 6.6E-05 2.2E-09 63.8 3.7 30 60-90 2-31 (179)
151 2bwj_A Adenylate kinase 5; pho 97.5 6.7E-05 2.3E-09 65.8 3.8 33 58-90 11-43 (199)
152 3t61_A Gluconokinase; PSI-biol 97.5 8.6E-05 2.9E-09 65.9 4.5 32 59-90 18-49 (202)
153 3cm0_A Adenylate kinase; ATP-b 97.4 7.4E-05 2.5E-09 65.0 3.9 31 59-89 4-34 (186)
154 1z6t_A APAF-1, apoptotic prote 97.4 0.0014 4.9E-08 67.3 14.1 24 58-81 146-169 (591)
155 1ukz_A Uridylate kinase; trans 97.4 8.5E-05 2.9E-09 65.7 4.2 34 57-90 13-46 (203)
156 3tlx_A Adenylate kinase 2; str 97.4 8.7E-05 3E-09 68.5 4.3 34 57-90 27-60 (243)
157 2zts_A Putative uncharacterize 97.4 0.0003 1E-08 63.6 7.8 38 54-91 25-66 (251)
158 1kht_A Adenylate kinase; phosp 97.4 8.8E-05 3E-09 64.4 3.8 26 59-84 3-28 (192)
159 1e6c_A Shikimate kinase; phosp 97.4 0.0001 3.4E-09 63.3 4.1 31 60-90 3-33 (173)
160 1g5t_A COB(I)alamin adenosyltr 97.4 0.00024 8.4E-09 64.0 6.6 110 61-196 30-168 (196)
161 2dr3_A UPF0273 protein PH0284; 97.4 0.00026 9E-09 63.9 6.8 38 54-91 18-58 (247)
162 1ak2_A Adenylate kinase isoenz 97.4 0.00014 4.8E-09 66.3 4.9 33 58-90 15-47 (233)
163 2ze6_A Isopentenyl transferase 97.4 0.00013 4.5E-09 67.8 4.8 32 61-92 3-34 (253)
164 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.9E-09 65.7 3.8 30 61-90 2-31 (216)
165 3fb4_A Adenylate kinase; psych 97.3 0.00012 4.2E-09 65.4 3.9 30 61-90 2-31 (216)
166 3be4_A Adenylate kinase; malar 97.3 0.00013 4.5E-09 65.7 4.0 32 59-90 5-36 (217)
167 4eun_A Thermoresistant glucoki 97.3 0.00018 6.1E-09 63.9 4.7 32 57-88 27-58 (200)
168 1knq_A Gluconate kinase; ALFA/ 97.3 0.00018 6.2E-09 62.0 4.7 32 58-89 7-38 (175)
169 2pt5_A Shikimate kinase, SK; a 97.3 0.00019 6.3E-09 61.4 4.6 30 61-90 2-31 (168)
170 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00012 4.2E-09 71.8 3.8 30 60-89 25-54 (359)
171 1zak_A Adenylate kinase; ATP:A 97.3 0.00012 4E-09 66.1 3.4 32 58-89 4-35 (222)
172 2pez_A Bifunctional 3'-phospho 97.3 0.00022 7.5E-09 61.9 4.9 37 57-93 3-42 (179)
173 1g41_A Heat shock protein HSLU 97.3 0.00053 1.8E-08 69.2 8.3 88 123-217 251-345 (444)
174 2bbw_A Adenylate kinase 4, AK4 97.3 0.0002 7E-09 65.6 4.9 32 58-89 26-57 (246)
175 3sr0_A Adenylate kinase; phosp 97.3 0.00019 6.6E-09 64.9 4.4 29 61-89 2-30 (206)
176 3crm_A TRNA delta(2)-isopenten 97.3 0.00094 3.2E-08 64.7 9.5 36 58-93 4-39 (323)
177 2b8t_A Thymidine kinase; deoxy 97.2 0.00024 8.3E-09 65.2 5.0 74 59-133 12-100 (223)
178 3uie_A Adenylyl-sulfate kinase 97.2 0.00078 2.7E-08 59.7 7.8 38 57-94 23-63 (200)
179 1cke_A CK, MSSA, protein (cyti 97.2 0.00025 8.6E-09 63.6 4.5 31 59-89 5-35 (227)
180 2z0h_A DTMP kinase, thymidylat 97.2 0.00052 1.8E-08 59.9 6.2 31 61-91 2-35 (197)
181 2v54_A DTMP kinase, thymidylat 97.2 0.00026 9E-09 62.3 4.2 34 58-91 3-37 (204)
182 1vma_A Cell division protein F 97.2 0.0021 7.1E-08 61.7 10.7 72 56-131 101-195 (306)
183 2pbr_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 60.7 4.8 31 61-91 2-35 (195)
184 1e4v_A Adenylate kinase; trans 97.1 0.00028 9.6E-09 63.2 4.1 30 61-90 2-31 (214)
185 2r6a_A DNAB helicase, replicat 97.1 0.0021 7.2E-08 64.7 11.0 38 54-91 198-239 (454)
186 3vlf_B 26S protease regulatory 97.1 0.0011 3.6E-08 51.9 6.6 38 209-246 2-43 (88)
187 3r20_A Cytidylate kinase; stru 97.1 0.00037 1.3E-08 64.4 4.6 32 58-89 8-39 (233)
188 1nks_A Adenylate kinase; therm 97.1 0.0002 7E-09 62.1 2.7 24 61-84 3-26 (194)
189 2jaq_A Deoxyguanosine kinase; 97.1 0.00034 1.2E-08 61.3 4.2 29 61-89 2-30 (205)
190 2plr_A DTMP kinase, probable t 97.1 0.00036 1.2E-08 61.5 4.2 28 59-86 4-31 (213)
191 3ake_A Cytidylate kinase; CMP 97.1 0.00045 1.5E-08 60.9 4.8 31 61-91 4-34 (208)
192 2xb4_A Adenylate kinase; ATP-b 97.1 0.00035 1.2E-08 63.3 4.1 30 61-90 2-31 (223)
193 1jjv_A Dephospho-COA kinase; P 97.0 0.00037 1.3E-08 61.8 4.0 29 60-89 3-31 (206)
194 1uf9_A TT1252 protein; P-loop, 97.0 0.00044 1.5E-08 60.7 4.5 32 58-90 7-38 (203)
195 3sfz_A APAF-1, apoptotic pepti 97.0 0.0086 3E-07 66.1 15.8 26 57-82 145-170 (1249)
196 2wwf_A Thymidilate kinase, put 97.0 0.00018 6.2E-09 63.7 1.8 31 57-87 8-38 (212)
197 2if2_A Dephospho-COA kinase; a 97.0 0.00034 1.2E-08 61.9 3.6 30 61-91 3-32 (204)
198 2eyu_A Twitching motility prot 97.0 0.00048 1.6E-08 64.5 4.7 72 56-131 22-107 (261)
199 1nn5_A Similar to deoxythymidy 97.0 0.00022 7.6E-09 63.2 2.1 30 57-86 7-36 (215)
200 1m7g_A Adenylylsulfate kinase; 97.0 0.001 3.5E-08 59.4 6.5 40 56-95 22-65 (211)
201 1rz3_A Hypothetical protein rb 97.0 0.0011 3.9E-08 58.8 6.7 49 38-91 6-57 (201)
202 2qt1_A Nicotinamide riboside k 97.0 0.00038 1.3E-08 61.8 3.5 37 54-90 16-53 (207)
203 3a8t_A Adenylate isopentenyltr 97.0 0.0016 5.5E-08 63.4 8.0 36 58-93 39-74 (339)
204 3jvv_A Twitching mobility prot 97.0 0.00076 2.6E-08 66.1 5.8 67 61-131 125-205 (356)
205 2q6t_A DNAB replication FORK h 97.0 0.0044 1.5E-07 62.1 11.5 39 54-92 195-237 (444)
206 3dm5_A SRP54, signal recogniti 97.0 0.0048 1.6E-07 62.2 11.7 70 58-131 99-191 (443)
207 3zvl_A Bifunctional polynucleo 96.9 0.00054 1.9E-08 68.3 4.6 33 57-89 256-288 (416)
208 4gp7_A Metallophosphoesterase; 96.9 0.0014 4.6E-08 56.9 6.5 23 56-78 6-28 (171)
209 1uj2_A Uridine-cytidine kinase 96.9 0.0006 2.1E-08 62.8 4.4 40 57-96 20-67 (252)
210 2h92_A Cytidylate kinase; ross 96.9 0.00068 2.3E-08 60.6 4.3 32 59-90 3-34 (219)
211 4e22_A Cytidylate kinase; P-lo 96.9 0.0008 2.7E-08 62.2 4.8 32 58-89 26-57 (252)
212 1vht_A Dephospho-COA kinase; s 96.9 0.00082 2.8E-08 60.2 4.7 32 58-90 3-34 (218)
213 1q3t_A Cytidylate kinase; nucl 96.9 0.00085 2.9E-08 61.1 4.8 35 55-89 12-46 (236)
214 1q57_A DNA primase/helicase; d 96.9 0.0017 5.9E-08 66.0 7.6 39 54-92 237-279 (503)
215 2axn_A 6-phosphofructo-2-kinas 96.9 0.0012 4.1E-08 67.9 6.4 29 58-86 34-62 (520)
216 2yvu_A Probable adenylyl-sulfa 96.8 0.00098 3.3E-08 58.1 4.9 36 57-92 11-49 (186)
217 3c8u_A Fructokinase; YP_612366 96.8 0.001 3.5E-08 59.4 5.1 29 56-84 19-47 (208)
218 2fz4_A DNA repair protein RAD2 96.8 0.0025 8.5E-08 58.4 7.8 33 61-93 110-142 (237)
219 3bh0_A DNAB-like replicative h 96.8 0.0053 1.8E-07 58.7 10.4 38 54-91 63-103 (315)
220 2grj_A Dephospho-COA kinase; T 96.8 0.00064 2.2E-08 60.7 3.6 33 59-91 12-44 (192)
221 3nwj_A ATSK2; P loop, shikimat 96.8 0.00076 2.6E-08 62.9 4.3 33 59-91 48-80 (250)
222 1ltq_A Polynucleotide kinase; 96.8 0.0007 2.4E-08 63.6 3.7 30 59-88 2-32 (301)
223 2f6r_A COA synthase, bifunctio 96.7 0.00096 3.3E-08 62.9 4.4 32 58-90 74-105 (281)
224 2iut_A DNA translocase FTSK; n 96.7 0.013 4.6E-07 60.7 13.2 73 124-217 345-419 (574)
225 2ewv_A Twitching motility prot 96.7 0.0012 4.2E-08 64.9 5.2 28 56-83 133-160 (372)
226 2j41_A Guanylate kinase; GMP, 96.7 0.0008 2.7E-08 59.2 3.5 28 56-83 3-30 (207)
227 2qor_A Guanylate kinase; phosp 96.7 0.00095 3.3E-08 59.3 3.9 28 57-84 10-37 (204)
228 3bgw_A DNAB-like replicative h 96.7 0.0068 2.3E-07 61.0 10.4 39 54-92 192-233 (444)
229 3foz_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 63.6 4.6 38 57-94 8-45 (316)
230 3kl4_A SRP54, signal recogniti 96.6 0.0073 2.5E-07 60.7 10.0 34 58-91 96-132 (433)
231 3asz_A Uridine kinase; cytidin 96.6 0.0011 3.9E-08 58.7 3.6 33 57-89 4-38 (211)
232 3tau_A Guanylate kinase, GMP k 96.5 0.0014 4.8E-08 58.6 3.7 29 57-85 6-34 (208)
233 3tqc_A Pantothenate kinase; bi 96.5 0.0032 1.1E-07 60.8 6.4 37 48-84 81-117 (321)
234 3fdi_A Uncharacterized protein 96.5 0.0019 6.3E-08 58.0 4.4 30 60-89 7-36 (201)
235 2a5y_B CED-4; apoptosis; HET: 96.5 0.0067 2.3E-07 62.3 9.1 25 57-81 150-174 (549)
236 1kgd_A CASK, peripheral plasma 96.5 0.0018 6E-08 56.5 4.0 27 58-84 4-30 (180)
237 2bdt_A BH3686; alpha-beta prot 96.5 0.002 6.7E-08 56.2 4.2 25 60-84 3-27 (189)
238 1tf7_A KAIC; homohexamer, hexa 96.5 0.017 5.9E-07 59.0 11.9 38 55-92 35-76 (525)
239 3d3q_A TRNA delta(2)-isopenten 96.5 0.0018 6.1E-08 63.2 4.1 34 59-92 7-40 (340)
240 3tr0_A Guanylate kinase, GMP k 96.5 0.0019 6.5E-08 56.7 4.0 34 57-92 5-38 (205)
241 1sq5_A Pantothenate kinase; P- 96.4 0.0033 1.1E-07 60.0 5.8 37 48-84 69-105 (308)
242 1x6v_B Bifunctional 3'-phospho 96.4 0.0071 2.4E-07 63.5 8.7 38 58-95 51-91 (630)
243 2r8r_A Sensor protein; KDPD, P 96.4 0.0021 7.2E-08 59.2 4.1 32 60-91 7-41 (228)
244 2j37_W Signal recognition part 96.4 0.017 5.7E-07 59.2 11.0 36 57-92 99-137 (504)
245 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.9E-08 59.0 4.1 31 60-90 9-39 (230)
246 3exa_A TRNA delta(2)-isopenten 96.3 0.0023 7.7E-08 61.9 3.9 34 59-92 3-36 (322)
247 3a00_A Guanylate kinase, GMP k 96.3 0.0021 7.2E-08 56.3 3.3 26 59-84 1-26 (186)
248 1odf_A YGR205W, hypothetical 3 96.3 0.0056 1.9E-07 58.1 6.4 31 55-85 27-57 (290)
249 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0034 1.2E-07 60.6 5.0 70 59-132 171-250 (330)
250 2c9o_A RUVB-like 1; hexameric 96.2 0.011 3.6E-07 59.4 8.6 72 123-222 296-380 (456)
251 4f4c_A Multidrug resistance pr 96.2 0.015 5.1E-07 66.1 10.7 31 55-85 440-470 (1321)
252 2jeo_A Uridine-cytidine kinase 96.2 0.003 1E-07 57.8 4.1 32 55-86 21-52 (245)
253 3eph_A TRNA isopentenyltransfe 96.2 0.0028 9.6E-08 63.2 4.1 34 58-91 1-34 (409)
254 2qmh_A HPR kinase/phosphorylas 96.1 0.0024 8.2E-08 57.8 2.7 33 59-92 34-66 (205)
255 3hdt_A Putative kinase; struct 96.1 0.0037 1.3E-07 57.1 4.1 31 59-89 14-44 (223)
256 4eaq_A DTMP kinase, thymidylat 96.1 0.0046 1.6E-07 56.4 4.5 30 56-85 23-52 (229)
257 1ex7_A Guanylate kinase; subst 96.1 0.0057 1.9E-07 54.4 4.9 27 61-87 3-29 (186)
258 2gks_A Bifunctional SAT/APS ki 96.0 0.0077 2.6E-07 62.2 6.5 63 32-95 346-411 (546)
259 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 55.5 3.3 27 58-84 3-29 (198)
260 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0049 1.7E-07 62.5 4.6 24 60-83 152-175 (473)
261 1nlf_A Regulatory protein REPA 96.0 0.0032 1.1E-07 58.7 3.0 30 54-83 25-54 (279)
262 1znw_A Guanylate kinase, GMP k 96.0 0.0045 1.5E-07 55.1 3.8 30 55-84 16-45 (207)
263 1gtv_A TMK, thymidylate kinase 96.0 0.0021 7E-08 56.9 1.5 25 61-85 2-26 (214)
264 1m8p_A Sulfate adenylyltransfe 95.9 0.01 3.4E-07 61.7 6.8 40 56-95 393-436 (573)
265 1g8f_A Sulfate adenylyltransfe 95.9 0.0052 1.8E-07 63.1 4.5 53 32-85 369-421 (511)
266 1cr0_A DNA primase/helicase; R 95.9 0.0048 1.6E-07 57.9 3.9 30 54-83 30-59 (296)
267 3ney_A 55 kDa erythrocyte memb 95.9 0.0077 2.6E-07 54.1 4.9 27 58-84 18-44 (197)
268 4a1f_A DNAB helicase, replicat 95.9 0.0097 3.3E-07 57.8 6.0 38 54-91 41-81 (338)
269 1z6g_A Guanylate kinase; struc 95.8 0.0046 1.6E-07 55.8 3.4 29 55-83 19-47 (218)
270 2xxa_A Signal recognition part 95.8 0.025 8.7E-07 56.7 9.0 37 57-93 98-138 (433)
271 1bif_A 6-phosphofructo-2-kinas 95.8 0.011 3.8E-07 59.5 6.3 30 57-86 37-66 (469)
272 3ice_A Transcription terminati 95.8 0.027 9.1E-07 56.0 8.8 79 57-135 172-274 (422)
273 1a7j_A Phosphoribulokinase; tr 95.8 0.0036 1.2E-07 59.4 2.5 37 59-95 5-44 (290)
274 3thx_B DNA mismatch repair pro 95.8 0.041 1.4E-06 60.2 11.1 26 56-81 670-695 (918)
275 1htw_A HI0065; nucleotide-bind 95.8 0.0069 2.4E-07 52.3 4.1 29 55-83 29-57 (158)
276 1ls1_A Signal recognition part 95.8 0.023 7.7E-07 53.9 8.0 26 58-83 97-122 (295)
277 4b3f_X DNA-binding protein smu 95.7 0.017 6E-07 60.5 7.7 33 61-93 207-242 (646)
278 3aji_B S6C, proteasome (prosom 95.7 0.0074 2.5E-07 46.1 3.6 38 209-246 2-43 (83)
279 2ocp_A DGK, deoxyguanosine kin 95.7 0.0072 2.5E-07 54.9 4.0 26 59-84 2-27 (241)
280 1j8m_F SRP54, signal recogniti 95.6 0.027 9.1E-07 53.6 8.0 34 59-92 98-134 (297)
281 3b9q_A Chloroplast SRP recepto 95.6 0.016 5.6E-07 55.2 6.5 28 56-83 97-124 (302)
282 3upu_A ATP-dependent DNA helic 95.6 0.01 3.5E-07 59.6 5.4 23 61-83 47-69 (459)
283 3aez_A Pantothenate kinase; tr 95.6 0.0078 2.7E-07 57.7 4.2 29 56-84 87-115 (312)
284 3p32_A Probable GTPase RV1496/ 95.6 0.065 2.2E-06 51.8 10.9 27 57-83 77-103 (355)
285 2ius_A DNA translocase FTSK; n 95.6 0.073 2.5E-06 54.5 11.6 40 177-218 331-374 (512)
286 2v9p_A Replication protein E1; 95.5 0.0088 3E-07 57.3 4.3 30 54-83 121-150 (305)
287 2oap_1 GSPE-2, type II secreti 95.5 0.0059 2E-07 62.6 3.2 70 58-131 259-342 (511)
288 3lnc_A Guanylate kinase, GMP k 95.5 0.0043 1.5E-07 56.0 2.0 29 55-83 23-52 (231)
289 1p5z_B DCK, deoxycytidine kina 95.5 0.0035 1.2E-07 57.9 1.3 28 57-84 22-49 (263)
290 1p9r_A General secretion pathw 95.4 0.013 4.4E-07 58.5 5.3 72 60-131 168-245 (418)
291 1w4r_A Thymidine kinase; type 95.4 0.021 7.2E-07 51.3 6.1 37 57-93 18-57 (195)
292 1c9k_A COBU, adenosylcobinamid 95.4 0.0084 2.9E-07 53.2 3.4 32 62-94 2-33 (180)
293 1vt4_I APAF-1 related killer D 95.4 0.019 6.5E-07 63.7 6.7 24 59-82 150-173 (1221)
294 1s96_A Guanylate kinase, GMP k 95.4 0.0099 3.4E-07 54.0 3.9 28 57-84 14-41 (219)
295 2orw_A Thymidine kinase; TMTK, 95.4 0.014 4.6E-07 51.5 4.6 32 59-90 3-37 (184)
296 2og2_A Putative signal recogni 95.4 0.021 7.1E-07 56.0 6.4 28 56-83 154-181 (359)
297 3v9p_A DTMP kinase, thymidylat 95.3 0.024 8.2E-07 51.9 6.3 26 58-83 24-49 (227)
298 3thx_A DNA mismatch repair pro 95.3 0.072 2.5E-06 58.4 11.1 23 59-81 662-684 (934)
299 3tmk_A Thymidylate kinase; pho 95.3 0.032 1.1E-06 50.6 6.9 32 58-89 4-35 (216)
300 1wb9_A DNA mismatch repair pro 95.2 0.088 3E-06 56.8 11.3 25 58-82 606-630 (800)
301 3e70_C DPA, signal recognition 95.2 0.024 8.2E-07 54.8 6.1 27 57-83 127-153 (328)
302 2i3b_A HCR-ntpase, human cance 95.2 0.011 3.9E-07 52.4 3.4 23 61-83 3-25 (189)
303 1np6_A Molybdopterin-guanine d 95.1 0.014 4.9E-07 51.1 3.9 26 58-83 5-30 (174)
304 3tqf_A HPR(Ser) kinase; transf 95.1 0.015 5.1E-07 51.5 4.0 30 59-89 16-45 (181)
305 1rj9_A FTSY, signal recognitio 95.1 0.015 5.2E-07 55.5 4.4 26 58-83 101-126 (304)
306 2yhs_A FTSY, cell division pro 95.0 0.034 1.2E-06 56.8 6.8 29 55-83 289-317 (503)
307 1xjc_A MOBB protein homolog; s 95.0 0.016 5.4E-07 50.8 3.8 33 59-91 4-39 (169)
308 4i1u_A Dephospho-COA kinase; s 95.0 0.018 6.3E-07 52.2 4.2 31 60-91 10-40 (210)
309 3kta_A Chromosome segregation 94.9 0.016 5.6E-07 49.8 3.7 24 61-84 28-51 (182)
310 3lxw_A GTPase IMAP family memb 94.9 0.029 9.9E-07 51.4 5.4 25 58-82 20-44 (247)
311 3e1s_A Exodeoxyribonuclease V, 94.8 0.015 5.2E-07 60.3 3.8 34 59-92 204-240 (574)
312 1zu4_A FTSY; GTPase, signal re 94.8 0.039 1.3E-06 53.0 6.4 36 56-91 102-140 (320)
313 4a82_A Cystic fibrosis transme 94.8 0.064 2.2E-06 55.5 8.4 30 55-84 363-392 (578)
314 3cr8_A Sulfate adenylyltranfer 94.8 0.036 1.2E-06 57.3 6.5 30 55-84 365-394 (552)
315 2px0_A Flagellar biosynthesis 94.8 0.018 6.1E-07 54.8 3.8 36 57-92 103-142 (296)
316 4edh_A DTMP kinase, thymidylat 94.8 0.02 6.7E-07 51.8 3.9 34 58-91 5-41 (213)
317 2qm8_A GTPase/ATPase; G protei 94.7 0.059 2E-06 52.0 7.5 29 55-83 51-79 (337)
318 2cbz_A Multidrug resistance-as 94.6 0.015 5.2E-07 53.3 2.8 29 55-83 27-55 (237)
319 1ewq_A DNA mismatch repair pro 94.6 0.068 2.3E-06 57.4 8.2 23 60-82 577-599 (765)
320 2dzn_B 26S protease regulatory 94.6 0.0096 3.3E-07 45.5 1.2 36 211-246 1-40 (82)
321 3vkw_A Replicase large subunit 94.6 0.063 2.2E-06 54.0 7.4 27 56-82 158-184 (446)
322 2onk_A Molybdate/tungstate ABC 94.6 0.018 6.2E-07 53.0 3.2 29 55-84 21-49 (240)
323 3tif_A Uncharacterized ABC tra 94.5 0.016 5.5E-07 53.0 2.8 30 55-84 27-56 (235)
324 2ffh_A Protein (FFH); SRP54, s 94.5 0.088 3E-06 52.6 8.3 34 58-91 97-133 (425)
325 2pcj_A ABC transporter, lipopr 94.5 0.013 4.6E-07 53.2 2.0 30 55-84 26-55 (224)
326 1b0u_A Histidine permease; ABC 94.4 0.018 6.3E-07 53.6 2.8 39 55-93 28-68 (262)
327 3ch4_B Pmkase, phosphomevalona 94.4 0.022 7.5E-07 51.4 3.2 31 55-85 7-37 (202)
328 2gk6_A Regulator of nonsense t 94.4 0.02 6.9E-07 59.8 3.4 23 61-83 197-219 (624)
329 1mv5_A LMRA, multidrug resista 94.3 0.019 6.7E-07 52.7 2.8 29 55-83 24-52 (243)
330 3lv8_A DTMP kinase, thymidylat 94.3 0.027 9.1E-07 51.9 3.6 27 58-84 26-52 (236)
331 2f1r_A Molybdopterin-guanine d 94.3 0.02 6.8E-07 50.0 2.6 25 60-84 3-27 (171)
332 2zu0_C Probable ATP-dependent 94.3 0.024 8.2E-07 52.9 3.3 28 55-82 42-69 (267)
333 1lw7_A Transcriptional regulat 94.2 0.031 1.1E-06 54.2 4.2 32 55-86 164-197 (365)
334 2ghi_A Transport protein; mult 94.1 0.022 7.4E-07 53.0 2.8 29 55-83 42-70 (260)
335 2olj_A Amino acid ABC transpor 94.1 0.022 7.6E-07 53.2 2.8 39 55-93 46-86 (263)
336 3ld9_A DTMP kinase, thymidylat 94.1 0.034 1.2E-06 50.7 4.0 29 57-85 19-47 (223)
337 2p67_A LAO/AO transport system 94.1 0.13 4.4E-06 49.5 8.3 28 56-83 53-80 (341)
338 2d2e_A SUFC protein; ABC-ATPas 94.1 0.022 7.6E-07 52.6 2.8 28 55-82 25-52 (250)
339 3fvq_A Fe(3+) IONS import ATP- 94.1 0.024 8.1E-07 55.6 3.1 29 55-83 26-54 (359)
340 3d31_A Sulfate/molybdate ABC t 94.1 0.025 8.4E-07 55.2 3.1 29 55-83 22-50 (348)
341 2ixe_A Antigen peptide transpo 94.1 0.023 7.8E-07 53.3 2.8 30 55-84 41-70 (271)
342 2o8b_B DNA mismatch repair pro 94.1 0.25 8.5E-06 54.7 11.4 22 59-80 789-810 (1022)
343 1g6h_A High-affinity branched- 94.0 0.02 6.8E-07 53.1 2.2 30 55-84 29-58 (257)
344 3k53_A Ferrous iron transport 94.0 0.08 2.7E-06 48.9 6.4 23 60-82 4-26 (271)
345 2pze_A Cystic fibrosis transme 94.0 0.021 7.1E-07 52.1 2.3 30 55-84 30-59 (229)
346 2f9l_A RAB11B, member RAS onco 94.0 0.029 9.9E-07 48.9 3.2 23 60-82 6-28 (199)
347 2ff7_A Alpha-hemolysin translo 94.0 0.021 7E-07 52.8 2.2 30 55-84 31-60 (247)
348 2it1_A 362AA long hypothetical 94.0 0.028 9.6E-07 55.1 3.3 30 55-84 25-54 (362)
349 2yyz_A Sugar ABC transporter, 94.0 0.028 9.5E-07 55.0 3.3 29 55-83 25-53 (359)
350 3b85_A Phosphate starvation-in 94.0 0.022 7.6E-07 51.2 2.4 25 58-82 21-45 (208)
351 1ji0_A ABC transporter; ATP bi 94.0 0.021 7.2E-07 52.4 2.2 30 55-84 28-57 (240)
352 1oix_A RAS-related protein RAB 94.0 0.028 9.7E-07 48.8 3.0 24 60-83 30-53 (191)
353 2dyk_A GTP-binding protein; GT 93.9 0.033 1.1E-06 46.0 3.2 22 61-82 3-24 (161)
354 4f4c_A Multidrug resistance pr 93.9 0.05 1.7E-06 61.8 5.7 29 55-83 1101-1129(1321)
355 3rlf_A Maltose/maltodextrin im 93.9 0.029 1E-06 55.4 3.3 29 55-83 25-53 (381)
356 1v43_A Sugar-binding transport 93.9 0.03 1E-06 55.1 3.3 29 55-83 33-61 (372)
357 2v3c_C SRP54, signal recogniti 93.9 0.058 2E-06 54.0 5.5 35 58-92 98-135 (432)
358 1nrj_B SR-beta, signal recogni 93.9 0.039 1.3E-06 48.5 3.9 26 58-83 11-36 (218)
359 1sgw_A Putative ABC transporte 93.9 0.02 6.8E-07 51.9 1.9 29 56-84 32-60 (214)
360 1vpl_A ABC transporter, ATP-bi 93.9 0.026 9E-07 52.5 2.8 30 55-84 37-66 (256)
361 2yz2_A Putative ABC transporte 93.9 0.026 9E-07 52.6 2.8 29 55-83 29-57 (266)
362 3gfo_A Cobalt import ATP-bindi 93.8 0.023 7.8E-07 53.5 2.3 30 55-84 30-59 (275)
363 3szr_A Interferon-induced GTP- 93.8 0.13 4.5E-06 53.6 8.2 27 55-82 42-68 (608)
364 1oxx_K GLCV, glucose, ABC tran 93.8 0.025 8.4E-07 55.2 2.5 29 55-83 27-55 (353)
365 1z2a_A RAS-related protein RAB 93.8 0.035 1.2E-06 46.0 3.2 24 59-82 5-28 (168)
366 4g1u_C Hemin import ATP-bindin 93.8 0.024 8.1E-07 53.0 2.3 40 55-94 33-74 (266)
367 1z47_A CYSA, putative ABC-tran 93.8 0.027 9.3E-07 55.0 2.8 29 55-83 37-65 (355)
368 2ged_A SR-beta, signal recogni 93.8 0.045 1.5E-06 46.9 3.9 27 57-83 46-72 (193)
369 2qi9_C Vitamin B12 import ATP- 93.8 0.024 8.4E-07 52.4 2.3 30 55-84 22-51 (249)
370 1w36_D RECD, exodeoxyribonucle 93.7 0.035 1.2E-06 57.9 3.7 24 60-83 165-188 (608)
371 1tf7_A KAIC; homohexamer, hexa 93.7 0.029 9.9E-07 57.3 3.0 29 55-83 277-305 (525)
372 2nq2_C Hypothetical ABC transp 93.7 0.025 8.7E-07 52.4 2.3 29 55-83 27-55 (253)
373 1kao_A RAP2A; GTP-binding prot 93.7 0.039 1.3E-06 45.5 3.2 23 60-82 4-26 (167)
374 1yrb_A ATP(GTP)binding protein 93.7 0.076 2.6E-06 48.2 5.4 35 57-91 12-48 (262)
375 1g29_1 MALK, maltose transport 93.6 0.029 1E-06 55.1 2.8 29 55-83 25-53 (372)
376 2ihy_A ABC transporter, ATP-bi 93.6 0.026 9E-07 53.1 2.3 30 55-84 43-72 (279)
377 2ce2_X GTPase HRAS; signaling 93.6 0.037 1.3E-06 45.5 2.9 23 60-82 4-26 (166)
378 4tmk_A Protein (thymidylate ki 93.6 0.045 1.6E-06 49.4 3.7 25 59-83 3-27 (213)
379 2vp4_A Deoxynucleoside kinase; 93.5 0.045 1.5E-06 49.4 3.6 27 56-82 17-43 (230)
380 1ek0_A Protein (GTP-binding pr 93.5 0.042 1.4E-06 45.5 3.2 23 60-82 4-26 (170)
381 1u8z_A RAS-related protein RAL 93.4 0.044 1.5E-06 45.2 3.2 24 59-82 4-27 (168)
382 2zej_A Dardarin, leucine-rich 93.4 0.034 1.2E-06 47.8 2.5 21 61-81 4-24 (184)
383 1upt_A ARL1, ADP-ribosylation 93.4 0.058 2E-06 44.9 3.9 26 57-82 5-30 (171)
384 1z0j_A RAB-22, RAS-related pro 93.4 0.045 1.6E-06 45.4 3.2 24 60-83 7-30 (170)
385 3l0o_A Transcription terminati 93.4 0.2 6.8E-06 49.8 8.2 23 61-83 177-199 (427)
386 2wjy_A Regulator of nonsense t 93.4 0.038 1.3E-06 59.6 3.4 23 61-83 373-395 (800)
387 3bc1_A RAS-related protein RAB 93.4 0.045 1.5E-06 46.5 3.2 26 57-82 9-34 (195)
388 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.046 1.6E-06 45.9 3.2 24 59-82 7-30 (177)
389 2nzj_A GTP-binding protein REM 93.4 0.043 1.5E-06 45.9 3.0 24 59-82 4-27 (175)
390 3gd7_A Fusion complex of cysti 93.4 0.038 1.3E-06 54.6 3.1 28 55-82 43-70 (390)
391 2wji_A Ferrous iron transport 93.3 0.043 1.5E-06 46.2 3.0 23 60-82 4-26 (165)
392 3sop_A Neuronal-specific septi 93.3 0.045 1.5E-06 51.2 3.3 24 61-84 4-27 (270)
393 1z08_A RAS-related protein RAB 93.3 0.047 1.6E-06 45.4 3.2 24 59-82 6-29 (170)
394 1ky3_A GTP-binding protein YPT 93.3 0.048 1.7E-06 45.8 3.2 25 58-82 7-31 (182)
395 2xtp_A GTPase IMAP family memb 93.3 0.15 5.1E-06 46.4 6.8 25 58-82 21-45 (260)
396 2wsm_A Hydrogenase expression/ 93.3 0.054 1.9E-06 47.8 3.6 27 59-85 30-56 (221)
397 1g16_A RAS-related protein SEC 93.3 0.045 1.5E-06 45.5 2.9 23 60-82 4-26 (170)
398 3g5u_A MCG1178, multidrug resi 93.3 0.15 5E-06 57.8 8.0 30 55-84 412-441 (1284)
399 2lkc_A Translation initiation 93.2 0.064 2.2E-06 45.1 3.8 25 58-82 7-31 (178)
400 1r2q_A RAS-related protein RAB 93.2 0.051 1.7E-06 45.0 3.2 23 60-82 7-29 (170)
401 1r8s_A ADP-ribosylation factor 93.1 0.056 1.9E-06 44.8 3.3 22 61-82 2-23 (164)
402 2pjz_A Hypothetical protein ST 93.1 0.041 1.4E-06 51.4 2.7 28 55-83 27-54 (263)
403 2atv_A RERG, RAS-like estrogen 93.1 0.063 2.2E-06 46.4 3.7 26 57-82 26-51 (196)
404 2erx_A GTP-binding protein DI- 93.1 0.051 1.8E-06 45.1 3.0 23 60-82 4-26 (172)
405 1c1y_A RAS-related protein RAP 93.1 0.054 1.9E-06 44.8 3.2 23 60-82 4-26 (167)
406 2bbs_A Cystic fibrosis transme 93.0 0.04 1.4E-06 52.2 2.5 29 55-83 60-88 (290)
407 3q85_A GTP-binding protein REM 93.0 0.052 1.8E-06 45.2 3.0 21 61-81 4-24 (169)
408 3nh6_A ATP-binding cassette SU 93.0 0.041 1.4E-06 52.6 2.5 30 55-84 76-105 (306)
409 3clv_A RAB5 protein, putative; 93.0 0.069 2.4E-06 45.5 3.8 25 58-82 6-30 (208)
410 2hxs_A RAB-26, RAS-related pro 92.9 0.05 1.7E-06 45.7 2.8 24 59-82 6-29 (178)
411 2y8e_A RAB-protein 6, GH09086P 92.9 0.054 1.8E-06 45.4 2.9 23 60-82 15-37 (179)
412 2gza_A Type IV secretion syste 92.9 0.032 1.1E-06 54.3 1.7 35 57-91 173-209 (361)
413 3q72_A GTP-binding protein RAD 92.9 0.048 1.7E-06 45.3 2.6 21 61-81 4-24 (166)
414 1z0f_A RAB14, member RAS oncog 92.9 0.06 2E-06 45.1 3.2 24 59-82 15-38 (179)
415 2wjg_A FEOB, ferrous iron tran 92.8 0.056 1.9E-06 46.1 3.0 23 60-82 8-30 (188)
416 1dek_A Deoxynucleoside monopho 92.8 0.055 1.9E-06 50.0 3.0 28 60-87 2-29 (241)
417 4dsu_A GTPase KRAS, isoform 2B 92.8 0.062 2.1E-06 45.5 3.2 24 59-82 4-27 (189)
418 4hlc_A DTMP kinase, thymidylat 92.8 0.12 4E-06 46.3 5.1 32 60-91 3-36 (205)
419 1pui_A ENGB, probable GTP-bind 92.8 0.03 1E-06 48.9 1.2 28 55-82 22-49 (210)
420 3b1v_A Ferrous iron uptake tra 92.8 0.16 5.6E-06 47.3 6.3 23 60-82 4-26 (272)
421 2a9k_A RAS-related protein RAL 92.7 0.063 2.1E-06 45.3 3.2 24 59-82 18-41 (187)
422 3a1s_A Iron(II) transport prot 92.7 0.18 6.2E-06 46.4 6.5 23 60-82 6-28 (258)
423 2xzl_A ATP-dependent helicase 92.7 0.055 1.9E-06 58.4 3.3 33 61-93 377-413 (802)
424 2hf9_A Probable hydrogenase ni 92.7 0.075 2.6E-06 47.0 3.8 26 59-84 38-63 (226)
425 3con_A GTPase NRAS; structural 92.7 0.063 2.2E-06 45.9 3.2 23 60-82 22-44 (190)
426 2efe_B Small GTP-binding prote 92.7 0.065 2.2E-06 45.2 3.2 23 60-82 13-35 (181)
427 1m7b_A RND3/RHOE small GTP-bin 92.7 0.059 2E-06 46.0 2.9 25 58-82 6-30 (184)
428 3tw8_B RAS-related protein RAB 92.7 0.058 2E-06 45.3 2.8 24 59-82 9-32 (181)
429 2fn4_A P23, RAS-related protei 92.7 0.062 2.1E-06 45.1 3.0 23 60-82 10-32 (181)
430 2dpy_A FLII, flagellum-specifi 92.6 0.1 3.4E-06 52.4 4.9 32 55-86 153-184 (438)
431 1ko7_A HPR kinase/phosphatase; 92.6 0.075 2.6E-06 51.1 3.8 30 59-89 144-173 (314)
432 2oil_A CATX-8, RAS-related pro 92.6 0.067 2.3E-06 45.9 3.2 25 58-82 24-48 (193)
433 2bme_A RAB4A, RAS-related prot 92.6 0.062 2.1E-06 45.6 2.9 24 59-82 10-33 (186)
434 2x77_A ADP-ribosylation factor 92.6 0.062 2.1E-06 46.0 2.9 28 53-80 16-43 (189)
435 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.062 2.1E-06 54.3 3.3 28 56-83 135-162 (460)
436 3tui_C Methionine import ATP-b 92.6 0.065 2.2E-06 52.6 3.3 29 55-83 50-78 (366)
437 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.077 2.6E-06 44.9 3.4 24 60-83 24-47 (149)
438 2gj8_A MNME, tRNA modification 92.5 0.07 2.4E-06 45.5 3.1 24 59-82 4-27 (172)
439 2xau_A PRE-mRNA-splicing facto 92.5 0.069 2.4E-06 57.3 3.7 23 60-82 110-132 (773)
440 3iby_A Ferrous iron transport 92.5 0.19 6.4E-06 46.4 6.2 22 61-82 3-24 (256)
441 1knx_A Probable HPR(Ser) kinas 92.5 0.072 2.5E-06 51.2 3.5 30 59-89 147-176 (312)
442 3i8s_A Ferrous iron transport 92.4 0.27 9.4E-06 45.6 7.4 23 60-82 4-26 (274)
443 3kkq_A RAS-related protein M-R 92.4 0.073 2.5E-06 45.1 3.2 24 59-82 18-41 (183)
444 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.074 2.5E-06 44.9 3.2 23 60-82 6-28 (186)
445 3t1o_A Gliding protein MGLA; G 92.4 0.069 2.4E-06 45.5 3.0 25 59-83 14-38 (198)
446 2obl_A ESCN; ATPase, hydrolase 92.4 0.098 3.4E-06 50.8 4.3 31 56-86 68-98 (347)
447 2g6b_A RAS-related protein RAB 92.3 0.076 2.6E-06 44.7 3.2 25 58-82 9-33 (180)
448 3tkl_A RAS-related protein RAB 92.3 0.077 2.6E-06 45.4 3.2 25 58-82 15-39 (196)
449 3g5u_A MCG1178, multidrug resi 92.3 0.45 1.5E-05 53.9 10.2 29 55-83 1055-1083(1284)
450 2gf9_A RAS-related protein RAB 92.3 0.078 2.7E-06 45.4 3.2 24 59-82 22-45 (189)
451 3bwd_D RAC-like GTP-binding pr 92.3 0.097 3.3E-06 44.1 3.7 24 59-82 8-31 (182)
452 3c5c_A RAS-like protein 12; GD 92.1 0.083 2.9E-06 45.5 3.2 23 60-82 22-44 (187)
453 2iwr_A Centaurin gamma 1; ANK 92.1 0.069 2.4E-06 45.0 2.6 24 59-82 7-30 (178)
454 3dz8_A RAS-related protein RAB 92.1 0.081 2.8E-06 45.5 3.1 25 59-83 23-47 (191)
455 2cxx_A Probable GTP-binding pr 92.1 0.068 2.3E-06 45.4 2.5 22 61-82 3-24 (190)
456 1x3s_A RAS-related protein RAB 92.0 0.086 2.9E-06 45.0 3.2 24 59-82 15-38 (195)
457 1m2o_B GTP-binding protein SAR 92.0 0.086 3E-06 45.6 3.2 23 60-82 24-46 (190)
458 1moz_A ARL1, ADP-ribosylation 92.0 0.086 2.9E-06 44.6 3.1 25 57-81 16-40 (183)
459 2bov_A RAla, RAS-related prote 92.0 0.086 3E-06 45.5 3.2 24 59-82 14-37 (206)
460 1svi_A GTP-binding protein YSX 92.0 0.089 3E-06 45.0 3.2 24 59-82 23-46 (195)
461 2p5s_A RAS and EF-hand domain 92.0 0.1 3.4E-06 45.3 3.5 26 57-82 26-51 (199)
462 1z06_A RAS-related protein RAB 92.0 0.09 3.1E-06 45.0 3.2 24 59-82 20-43 (189)
463 3ihw_A Centg3; RAS, centaurin, 92.0 0.089 3E-06 45.3 3.2 23 60-82 21-43 (184)
464 1ksh_A ARF-like protein 2; sma 92.0 0.096 3.3E-06 44.6 3.3 26 57-82 16-41 (186)
465 3hjn_A DTMP kinase, thymidylat 92.0 0.15 5.3E-06 45.1 4.8 32 62-93 3-37 (197)
466 2fg5_A RAB-22B, RAS-related pr 92.0 0.083 2.8E-06 45.5 3.0 25 58-82 22-46 (192)
467 1nij_A Hypothetical protein YJ 91.9 0.15 5.1E-06 48.5 5.0 23 61-83 6-28 (318)
468 3t5g_A GTP-binding protein RHE 91.9 0.085 2.9E-06 44.6 2.9 23 60-82 7-29 (181)
469 1vg8_A RAS-related protein RAB 91.9 0.092 3.2E-06 45.4 3.2 25 58-82 7-31 (207)
470 1zd9_A ADP-ribosylation factor 91.9 0.092 3.1E-06 45.1 3.2 25 58-82 21-45 (188)
471 2a5j_A RAS-related protein RAB 91.9 0.092 3.2E-06 45.1 3.2 24 59-82 21-44 (191)
472 1xx6_A Thymidine kinase; NESG, 91.9 0.19 6.3E-06 44.6 5.2 33 59-91 8-43 (191)
473 3pqc_A Probable GTP-binding pr 91.9 0.075 2.6E-06 45.2 2.5 23 60-82 24-46 (195)
474 3reg_A RHO-like small GTPase; 91.8 0.094 3.2E-06 45.1 3.2 25 58-82 22-46 (194)
475 1bg2_A Kinesin; motor protein, 91.8 0.14 4.7E-06 49.4 4.5 78 19-114 42-119 (325)
476 1zbd_A Rabphilin-3A; G protein 91.7 0.093 3.2E-06 45.4 3.0 24 59-82 8-31 (203)
477 1goj_A Kinesin, kinesin heavy 91.6 0.15 5E-06 49.8 4.6 79 18-114 44-123 (355)
478 2www_A Methylmalonic aciduria 91.6 0.12 4.2E-06 49.9 4.0 25 59-83 74-98 (349)
479 2bcg_Y Protein YP2, GTP-bindin 91.6 0.095 3.2E-06 45.5 2.9 24 59-82 8-31 (206)
480 3oes_A GTPase rhebl1; small GT 91.5 0.096 3.3E-06 45.5 2.9 25 58-82 23-47 (201)
481 2r9v_A ATP synthase subunit al 91.5 0.23 8E-06 50.7 6.1 28 61-88 177-205 (515)
482 3b6e_A Interferon-induced heli 91.5 0.14 4.8E-06 44.6 4.0 24 60-83 49-72 (216)
483 2gf0_A GTP-binding protein DI- 91.5 0.14 4.6E-06 43.9 3.8 25 58-82 7-31 (199)
484 2wbe_C Bipolar kinesin KRP-130 91.5 0.17 5.8E-06 49.7 4.9 87 18-114 64-150 (373)
485 1t5c_A CENP-E protein, centrom 91.5 0.14 4.8E-06 49.9 4.2 76 18-114 41-116 (349)
486 3cph_A RAS-related protein SEC 91.4 0.12 4.2E-06 44.8 3.5 26 57-82 18-43 (213)
487 3qks_A DNA double-strand break 91.4 0.11 3.7E-06 46.2 3.1 27 59-85 23-49 (203)
488 4dcu_A GTP-binding protein ENG 91.4 0.64 2.2E-05 46.3 9.2 22 61-82 25-46 (456)
489 4a14_A Kinesin, kinesin-like p 91.4 0.16 5.4E-06 49.4 4.5 81 19-114 48-128 (344)
490 1gwn_A RHO-related GTP-binding 91.4 0.1 3.5E-06 46.0 2.9 25 58-82 27-51 (205)
491 1zj6_A ADP-ribosylation factor 91.4 0.12 4.2E-06 44.1 3.4 26 57-82 14-39 (187)
492 2qag_B Septin-6, protein NEDD5 91.3 0.096 3.3E-06 52.4 3.0 28 55-82 36-65 (427)
493 2fh5_B SR-beta, signal recogni 91.3 0.12 4.3E-06 45.0 3.4 24 59-82 7-30 (214)
494 1fzq_A ADP-ribosylation factor 91.3 0.12 4E-06 44.3 3.2 25 58-82 15-39 (181)
495 2fu5_C RAS-related protein RAB 91.2 0.067 2.3E-06 45.3 1.6 25 58-82 7-31 (183)
496 2rcn_A Probable GTPase ENGC; Y 91.2 0.12 4.2E-06 50.5 3.5 24 60-83 216-239 (358)
497 2atx_A Small GTP binding prote 91.1 0.11 3.9E-06 44.5 3.0 23 60-82 19-41 (194)
498 2y65_A Kinesin, kinesin heavy 91.1 0.17 5.8E-06 49.6 4.5 78 19-114 49-126 (365)
499 2ew1_A RAS-related protein RAB 91.1 0.11 3.8E-06 45.6 2.9 24 59-82 26-49 (201)
500 3lxx_A GTPase IMAP family memb 91.1 0.11 3.9E-06 46.7 3.0 24 59-82 29-52 (239)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=2.5e-55 Score=423.15 Aligned_cols=292 Identities=88% Similarity=1.401 Sum_probs=253.6
Q ss_pred cccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCCh
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~ 103 (375)
+|+++.+++|+|++|+++++.+++|+|+..++.++|+|+|||||||||||++|++||++++.+++.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 017204 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183 (375)
Q Consensus 104 ~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~ 183 (375)
++.++++|..|.++++..+|+||||||||++++++++..+....++.+...|++++|+.+.+++++.+......+|+||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999888889999999999999999977655566677889999999999999989988887777788999999
Q ss_pred EeCCCCCCChhhcCCCcceEEEeCCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHH
Q 017204 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 263 (375)
Q Consensus 184 TTN~~~~Ld~ALlR~gRfd~~i~~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~ 263 (375)
|||+++.||+||+|+||||+.+++|+.++|.+|++.++...+++.+.+++++++|++++|++++++|++.+++++++|++
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hccCcchhhhhhcCcCCCCCCCCCccCHHHHHHhHHHHHHhhhhhhhcchHH
Q 017204 264 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLAD 315 (375)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~~~~e~~~~~~~~l~~ 315 (375)
..|.+++.+.+++++.+.|.|+++.+++++|+++|+++++||+++..++|++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~ 292 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 292 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999988899999999999999999999999999999999876
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-43 Score=350.10 Aligned_cols=209 Identities=16% Similarity=0.214 Sum_probs=174.2
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+.+|+++-|-..+...+.+.+......+-+ ...|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 345577777666777777776666655433 3459999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|+++++||.+|..| +..+||||||||||+++++|..+.. .....+.+++ |++.+| |. ....+
T Consensus 224 Gese~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~-lL~~lD--------g~---~~~~~ 287 (405)
T 4b4t_J 224 GEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE-LLNQLD--------GF---ETSKN 287 (405)
T ss_dssp THHHHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHH-HHHHHH--------TT---TCCCC
T ss_pred chHHHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHH-HHHhhh--------cc---CCCCC
Confidence 99999999999999 9999999999999999998863222 2223334443 333344 55 56688
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
|+||+|||+|+.|||||+||||||+.++ +|+.++|.+|++.|+... +++.+.|++.|+||+|+||..+
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHH
Confidence 9999999999999999999999999999 799999999999988764 5678889999999999999643
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-42 Score=343.27 Aligned_cols=209 Identities=19% Similarity=0.247 Sum_probs=172.0
Q ss_pred cccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+.+|+++-|-..+...+.+.+....... +....|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 3455777666666777766666554432 223469999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|+++++++.+|..| +..+||||||||+|+++++|..... .....+.+.+ |++.+| +. ....+
T Consensus 258 Gesek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-LL~~lD--------g~---~~~~~ 321 (437)
T 4b4t_I 258 GDGPRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE-LLNQLD--------GF---DDRGD 321 (437)
T ss_dssp SHHHHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHH-HHHHHH--------HC---CCSSS
T ss_pred chHHHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHH-HHHHhh--------Cc---CCCCC
Confidence 99999999999999 9999999999999999998863222 2222333333 333333 44 56678
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
|+||+|||+++.|||||+||||||+.|+ +|+.++|.+||+.|+... +++.+.|++.|+||+|+||..+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999999999999999999 899999999999998753 5678889999999999999643
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=343.69 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=171.3
Q ss_pred ccccccccccCCchhHHHHHHHHHHHhh-hhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKNF-MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~~-l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G 101 (375)
.+|+++-|-..+...+.+.+......+- ....|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 3457776666666666666555554332 234599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~V 181 (375)
+++++++.+|..| +..+||||||||+|+++++|.+... ...+.+..++..+|+ +++|. ....+|+|
T Consensus 258 ese~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~~~~--~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViV 323 (434)
T 4b4t_M 258 EGAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEK--SGDREVQRTMLELLN-----QLDGF---SSDDRVKV 323 (434)
T ss_dssp HHHHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSSGGG--GTTHHHHHHHHHHHH-----HHTTS---CSSCSSEE
T ss_pred hHHHHHHHHHHHH----HhcCCeEEeecchhhhhhccCCCCC--CCchHHHHHHHHHHH-----Hhhcc---CCCCCEEE
Confidence 9999999999999 9999999999999999998863222 122223333333333 33355 55678999
Q ss_pred EEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHH
Q 017204 182 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 182 I~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~ 246 (375)
|+|||+|+.|||||+||||||+.++ +|+.++|.+||+.++.. .+++.+.|++.|+||+|+||..+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999999999999999 79999999999988754 46788899999999999999643
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-41 Score=342.83 Aligned_cols=211 Identities=18% Similarity=0.249 Sum_probs=172.3
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+.+|+++-|-..+...+.+.+.......-+ ...|+++|+|||||||||||||++|+|||++++++|+.++++++.++|+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 455688777666777776666655544322 3459999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|++++++|.+|..| +..+||||||||+|+++.+|+..... ....+..++..+|+ ++++. ....+|+
T Consensus 285 Gesek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~Vi 350 (467)
T 4b4t_H 285 GEGARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGAG--GDNEVQRTMLELIT-----QLDGF---DPRGNIK 350 (467)
T ss_dssp SHHHHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSCG--GGGHHHHHHHHHHH-----HHHSS---CCTTTEE
T ss_pred CHHHHHHHHHHHHH----HhcCCceEeecccccccccccCcCCC--ccHHHHHHHHHHHH-----Hhhcc---CCCCcEE
Confidence 99999999999999 99999999999999999988632221 11222223333333 22244 5667899
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
||+|||+++.|||||+||||||+.|+ +|+.++|.+||+.|+... +++.+.|++.|+||+|+||..+
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 422 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 422 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHH
Confidence 99999999999999999999999999 899999999999988753 5778889999999999999643
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=341.95 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=173.2
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+.+|+++-|-..+...+.+.+......+-+ ...|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 345588777666777777766665544322 3459999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|+++++++.+|..| +..+||||||||+|+++++|.+... .....+.+++ |++.+| |. ....+
T Consensus 257 Gese~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~-lL~~lD--------g~---~~~~~ 320 (437)
T 4b4t_L 257 GESARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLME-LLTQMD--------GF---DNLGQ 320 (437)
T ss_dssp SHHHHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHH-HHHHHH--------SS---SCTTS
T ss_pred hHHHHHHHHHHHHH----HhcCCceeeeecccccccccccCCCCcchHHHHHHHH-HHHHhh--------cc---cCCCC
Confidence 99999999999999 9999999999999999998853222 2223333433 334444 55 55678
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHH
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~ 246 (375)
|+||+|||+|+.|||||+||||||+.|+ +|+.++|.+||+.|+.. .+++.+.|++.|+||+|+||..+
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999999999999999999 79999999999988765 36778899999999999999643
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=329.50 Aligned_cols=208 Identities=17% Similarity=0.228 Sum_probs=171.7
Q ss_pred ccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCC
Q 017204 23 YNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101 (375)
Q Consensus 23 ~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~G 101 (375)
.+|+++-|-..+...+.+.+....... +....|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 455777666666666666665555433 2234599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 179 (375)
++++.|+.+|..| +..+||||||||+|++++.|.+.. .....+++++++| +.+| |. ....+|
T Consensus 249 e~e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL-~~ld--------g~---~~~~~v 312 (428)
T 4b4t_K 249 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL-TQMD--------GF---DQSTNV 312 (428)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHH-HHHH--------HS---CSSCSE
T ss_pred hhHHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHH-HHhh--------CC---CCCCCE
Confidence 9999999999999 999999999999999999885322 2334445555443 4444 55 456789
Q ss_pred eEEEEeCCCCCCChhhcCCCcceEEEe---CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 180 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~---~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+||+|||+++.|||||+||||||+.|+ +|+.++|..|++.++... +++.+.|+..|+||+|+||..+
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHH
Confidence 999999999999999999999999987 489999999999887653 5678889999999999999643
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-39 Score=349.73 Aligned_cols=193 Identities=22% Similarity=0.345 Sum_probs=139.1
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++|+.+|..| ++.+||||||||||
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiD 580 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD 580 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGG
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CC
Q 017204 133 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 208 (375)
Q Consensus 133 ~i~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 208 (375)
++++.|+.. ....+.+++++++| ..+| |. ....+|+||+|||+|+.||+|++||||||+.++ +|
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL-~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp GCC--------------CHHHHHHH-HHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHhhccCCCCCCCchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 999998632 22345566777655 3444 55 556789999999999999999999999999999 79
Q ss_pred CHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHh
Q 017204 209 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 264 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~ 264 (375)
+.++|.+|++.++++. +++.+.|++.|+||||+||.. ++..+...++++.++.
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~---l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE---ICQRACKLAIRESIES 705 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHH---HHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHh
Confidence 9999999999998764 466777999999999999964 3444444556666543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-35 Score=317.34 Aligned_cols=224 Identities=20% Similarity=0.260 Sum_probs=184.3
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhh-hCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l-~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~ 99 (375)
...+|+++-|-......+.+.+......+-+ ...|+++|+|||||||||||||+||++||+++|.+|+.++++++.++|
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 3456688777777777777766665554433 466999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 017204 100 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179 (375)
Q Consensus 100 ~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 179 (375)
+|++++.++.+|..| ++.+||||||||||+++++|++ .......++++++| .++| +. ....+|
T Consensus 279 ~gese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~-~~~~~~~riv~~LL-~~md--------g~---~~~~~V 341 (806)
T 3cf2_A 279 AGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLL-TLMD--------GL---KQRAHV 341 (806)
T ss_dssp TTHHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTT-CCCTTHHHHHHHHH-THHH--------HC---CGGGCE
T ss_pred chHHHHHHHHHHHHH----HHcCCeEEEEehhcccccccCC-CCChHHHHHHHHHH-HHHh--------cc---cccCCE
Confidence 999999999999999 9999999999999999998863 33345555665444 4455 44 445689
Q ss_pred eEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC----CCCCHHHHHHHhcCCChhhHHHHHHHHhhh
Q 017204 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARV 253 (375)
Q Consensus 180 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~----~~v~~~~la~lt~gf~gadl~~~~al~~~~ 253 (375)
+||+|||+++.||+||+|+||||+.++ +|+.++|.+|++.++.. .+++...|+..|+||+|+||.. |+..+
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA 418 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEA 418 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHH
Confidence 999999999999999999999999999 79999999999999875 3678889999999999999964 34444
Q ss_pred hHHHHHHHHHh
Q 017204 254 YDDEVRKWISG 264 (375)
Q Consensus 254 ~~~~i~~~i~~ 264 (375)
...++++....
T Consensus 419 ~~~A~~r~~~~ 429 (806)
T 3cf2_A 419 ALQAIRKKMDL 429 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcccc
Confidence 44445555443
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.98 E-value=2.9e-31 Score=258.58 Aligned_cols=222 Identities=18% Similarity=0.204 Sum_probs=175.3
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~vs~s~l~s~~~ 100 (375)
..+|+++.+-..+...+.+.+........+...+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL 87 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhh
Confidence 44568888877777777666665555554444456788999999999999999999999999 89999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|++++.++.+|..| +..+|+||||||+|++.+.+... ......++++++| ..++ +. .....+|+
T Consensus 88 g~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll-~~ld--------~~--~~~~~~v~ 151 (322)
T 1xwi_A 88 GESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFL-VQMQ--------GV--GVDNDGIL 151 (322)
T ss_dssp CSCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHH-HHHH--------CS--SSCCTTEE
T ss_pred hHHHHHHHHHHHHH----HhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHH-HHHh--------cc--cccCCCEE
Confidence 99999999999998 88899999999999999887632 3344555555544 3344 22 12357899
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCC--C---HHHHHHHhcCCChhhHHHHHHHHhhh
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARV 253 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v--~---~~~la~lt~gf~gadl~~~~al~~~~ 253 (375)
||+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++..+
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A 226 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDA 226 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHH
Confidence 99999999999999999 9998888 79999999999998876543 3 344889999999999964 34444
Q ss_pred hHHHHHHHHHh
Q 017204 254 YDDEVRKWISG 264 (375)
Q Consensus 254 ~~~~i~~~i~~ 264 (375)
...++++.+..
T Consensus 227 ~~~a~r~~~~~ 237 (322)
T 1xwi_A 227 LMQPVRKVQSA 237 (322)
T ss_dssp HTHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 44556666543
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=4.2e-31 Score=256.71 Aligned_cols=226 Identities=17% Similarity=0.214 Sum_probs=174.8
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
.....+|+++.+...+...+.+.+........+...+..+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 34445668888877777776666655544444444567789999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|.|++++.++.+|..| +..+|+||||||||.+.+.++. .+.....++..++ +..++ +. .....+
T Consensus 91 ~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~l-l~~l~--------~~--~~~~~~ 154 (322)
T 3eie_A 91 WMGESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGE-GESEASRRIKTEL-LVQMN--------GV--GNDSQG 154 (322)
T ss_dssp TGGGHHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHHHHHHH-HHHHG--------GG--GTSCCC
T ss_pred ccchHHHHHHHHHHHH----HhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHH-HHHhc--------cc--cccCCc
Confidence 9999999999999999 8899999999999999988752 2333344444444 34444 22 124567
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCC--CH---HHHHHHhcCCChhhHHHHHHHHh
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRA 251 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v--~~---~~la~lt~gf~gadl~~~~al~~ 251 (375)
|+||+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. +. +.|++.++||+|++|. .++.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHH
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHH
Confidence 9999999999999999999 9998888 79999999999999876543 33 3488899999999996 3444
Q ss_pred hhhHHHHHHHHHhc
Q 017204 252 RVYDDEVRKWISGV 265 (375)
Q Consensus 252 ~~~~~~i~~~i~~~ 265 (375)
.+...++++.....
T Consensus 230 ~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 230 DALMQPIRKIQSAT 243 (322)
T ss_dssp HHTTHHHHHHHHCE
T ss_pred HHHHHHHHHHhhhh
Confidence 55555677776654
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=250.63 Aligned_cols=246 Identities=19% Similarity=0.259 Sum_probs=170.2
Q ss_pred cccccccccccCCchhHHHHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+.+|+++-+-..+...+.+.++..... ..+...++.+|+|+||+||||||||+|+++||.+++.+++.+++.++.++|.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~ 85 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYV 85 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhh
Confidence 345577666555555555544433322 2234568899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|+.++.++.+|..+ +...|+++|+||+|.++..++.. ......+.+++++ ..++ |. .....++
T Consensus 86 ~~~~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l-~~Ls--------gg---~~~~~~i 148 (274)
T 2x8a_A 86 GESERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLL-TEMD--------GL---EARQQVF 148 (274)
T ss_dssp HHHHHHHHHHHHHH----HHTCSEEEEEETCTTTCC----------CTTHHHHHH-HHHH--------TC---CSTTCEE
T ss_pred hHHHHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHH-Hhhh--------cc---cccCCEE
Confidence 99999999999998 78899999999999988766421 1111223333333 3333 33 4556789
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCC-------CCCCHHHHHHH--hcCCChhhHHHHHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIDFFGAL 249 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~-------~~v~~~~la~l--t~gf~gadl~~~~al 249 (375)
++++||+|+.||+|++||||||+.++ +|+.++|.+|++.++.. .+++.+.++.. ++||+|+||..+
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l--- 225 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSAL--- 225 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHH---
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHH---
Confidence 99999999999999999999999999 79999999999988743 35677788886 459999999643
Q ss_pred HhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCCCCCCccCHHHHHHhHHH
Q 017204 250 RARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300 (375)
Q Consensus 250 ~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~ 300 (375)
+..+...++++.+..... ........++.+++.+|...
T Consensus 226 ~~~a~~~a~~~~~~~~~~-------------~~~~~~~~i~~~df~~al~~ 263 (274)
T 2x8a_A 226 VREASICALRQEMARQKS-------------GNEKGELKVSHKHFEEAFKK 263 (274)
T ss_dssp HHHHHHHHHHHHC------------------------CCBCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccc-------------cccccCCeecHHHHHHHHHH
Confidence 333333344443221100 00112335788888887544
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=7.1e-31 Score=252.99 Aligned_cols=210 Identities=18% Similarity=0.285 Sum_probs=164.2
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~ 99 (375)
..++|+++.+...+...+.+.+....... .....++++++++|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 44556887776655555554443332211 11234788999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 100 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 100 ~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
.|++++.++.+|..| ....|+||||||+|.+...++... ......+.+.+ |+..++ +. ....
T Consensus 90 ~g~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~-lL~~l~--------~~---~~~~ 153 (301)
T 3cf0_A 90 FGESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ-ILTEMD--------GM---STKK 153 (301)
T ss_dssp HTTCTTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHH-HHHHHH--------SS---CTTS
T ss_pred cCchHHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHH-HHHHhh--------cc---cCCC
Confidence 999999999999999 888999999999999987654211 11222344443 444555 33 3456
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+|+||+|||+++.||++++|+|||++.++ +|+.++|.+|++.++... +++.+.++..+.+|+|++|..+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l 228 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 228 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHH
Confidence 79999999999999999999999998888 799999999998887653 5677889999999999988643
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=8e-31 Score=268.22 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=162.3
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHh--hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~--~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
....+|+++.+.......+.+.+. . .++ .+...+.++|+|+||+||||||||++|++||++++.+|+.++++++.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-F-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-H-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-H-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 445667887776555555444322 1 121 123458899999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.++|.++..++.+|..| +..+||||||||+|++..+++.. .......+.++++| ..++ +. ..
T Consensus 88 ~~~g~~~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL-~~ld--------~~---~~ 151 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL-VEMD--------GF---DS 151 (476)
T ss_dssp CCTTHHHHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH-HHHH--------HS---CG
T ss_pred HHhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH-HHHh--------cc---CC
Confidence 99999999999999999 88899999999999998887521 11122234444444 3333 33 23
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
..+|+||+|||+++.||++++|+||||+.+. +|+.++|.+|++.++... +++.+.++..+.||+|++|..+
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHH
Confidence 4579999999999999999999999999888 799999999998887653 4567779999999999999754
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=6.1e-30 Score=252.44 Aligned_cols=224 Identities=17% Similarity=0.221 Sum_probs=166.2
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
.....+|+++.+...+...+.+.+..+.....+...+.++++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34455678888877766666665555544444444567889999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|.|+.++.++.+|..| +...|+||||||+|.+.+.++.. +.....+++++ |+..++ +. .....+
T Consensus 124 ~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~-ll~~l~--------~~--~~~~~~ 187 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTE-LLVQMN--------GV--GNDSQG 187 (355)
T ss_dssp C---CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHHHHHH-HHHHHH--------HC--C---CC
T ss_pred hcchHHHHHHHHHHHH----HHcCCeEEEEechHhhcccCCCC-cchHHHHHHHH-HHHHhh--------cc--cccCCC
Confidence 9999999999999998 88899999999999999887522 33344444544 444444 22 123467
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CC---HHHHHHHhcCCChhhHHHHHHHHh
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIDFFGALRA 251 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~---~~~la~lt~gf~gadl~~~~al~~ 251 (375)
|+||+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+ ++ .+.|++.++||+|++|.. ++.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHH
Confidence 9999999999999999999 9998888 7999999999999887654 33 344899999999999964 344
Q ss_pred hhhHHHHHHHHH
Q 017204 252 RVYDDEVRKWIS 263 (375)
Q Consensus 252 ~~~~~~i~~~i~ 263 (375)
.+...++++...
T Consensus 263 ~A~~~a~~~~~~ 274 (355)
T 2qp9_X 263 DALMQPIRKIQS 274 (355)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444445555544
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.5e-28 Score=231.31 Aligned_cols=213 Identities=20% Similarity=0.273 Sum_probs=163.0
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
....++|+++.+-..+...+.+.+...... ......++.+++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 344566788777555444444433322211 1122347889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
.+.|+....++.+|..+ +...|+||||||+|.+..++.+... ......+..|..+++ .+++. ....
T Consensus 90 ~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~-----~~~~~---~~~~ 155 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLA-----EMDGF---DARG 155 (285)
T ss_dssp CSTTHHHHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHH-----HHHTT---CSSS
T ss_pred hccchHHHHHHHHHHHH----HHcCCeEEEEECHHHhcccCccccC--CccHHHHHHHHHHHH-----HhhCC---CCCC
Confidence 99999999999999998 8889999999999999887752211 112222333333333 11122 3446
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
+++||+|||.++.||++++|++||+..+. .|+.++|.+|++.++... ..+...++..+.||+++++..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 79999999999999999999999998888 799999999998887653 456778999999999999864
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=6.5e-29 Score=252.11 Aligned_cols=224 Identities=17% Similarity=0.195 Sum_probs=161.3
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCceEEeccCccccC
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESG 98 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~vs~s~l~s~ 98 (375)
....+|+++.+...+...+.+.+........+...+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 3445667777755555555444443333332222345678999999999999999999999999 899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|.|++++.++.+|..| +..+|+||||||||++++.+... ......++++++| ..++ +.. ....+
T Consensus 208 ~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL-~~l~--------~~~--~~~~~ 271 (444)
T 2zan_A 208 WLGESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFL-VQMQ--------GVG--VDNDG 271 (444)
T ss_dssp ----CCCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHH-TTTT--------CSS--CCCSS
T ss_pred hcchHHHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHH-HHHh--------Ccc--cCCCC
Confidence 9999999999999998 88899999999999998887632 3344455555444 3333 331 23578
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCC--C---HHHHHHHhcCCChhhHHHHHHHHh
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRA 251 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v--~---~~~la~lt~gf~gadl~~~~al~~ 251 (375)
|+||+|||+++.||++|+| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++.
T Consensus 272 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHH
T ss_pred EEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHH
Confidence 9999999999999999999 9998887 79999999999998876532 3 345899999999999974 344
Q ss_pred hhhHHHHHHHHHh
Q 017204 252 RVYDDEVRKWISG 264 (375)
Q Consensus 252 ~~~~~~i~~~i~~ 264 (375)
.+...++++.+..
T Consensus 347 ~a~~~a~r~~~~~ 359 (444)
T 2zan_A 347 DALMQPVRKVQSA 359 (444)
T ss_dssp HHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 4444556766654
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=3.8e-28 Score=227.49 Aligned_cols=210 Identities=19% Similarity=0.229 Sum_probs=159.6
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
.....+|+++.+...+...+.+.+. .+.. ..+...+.++|+++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3455667888876666665544322 2211 1223457788999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
.+.|+.++.++.+|..| ....|++|||||+|.+...+..... .....+.+.++| ..++ +. ..
T Consensus 84 ~~~~~~~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------~~---~~ 147 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML-VEMD--------GF---EG 147 (257)
T ss_dssp SCCCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHH-HHHH--------TC---CS
T ss_pred HhhhhhHHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHH-HHhh--------Cc---cc
Confidence 99999999999999998 7788999999999999887652211 112223444333 3333 23 34
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
..+++||+|||+++.+|++++|+|||++.+. +|+.++|.+|++.++... +++...++..+.||++++|..
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 5679999999999999999999999999888 799999999998887654 344566889999999999864
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=3.3e-29 Score=257.66 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=162.9
Q ss_pred ccccccccccccCCchhHHHHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~-k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~ 99 (375)
..++|+++.+...+...+.+.+. ... ...+...+.+.|+|+||+||||||||+||++||.+++.+++.++++++.+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 66777888776655555443322 211 1123355888999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 017204 100 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177 (375)
Q Consensus 100 ~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~ 177 (375)
.|...+.++.+|+.+ +...|+|+||||||.+...++... ......+.++++| ..++ +. ....
T Consensus 105 ~g~~~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-~~Ld--------g~---~~~~ 168 (499)
T 2dhr_A 105 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDT 168 (499)
T ss_dssp TTHHHHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-HHGG--------GC---CSSC
T ss_pred hhhHHHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-HHhc--------cc---ccCc
Confidence 999999999999988 667899999999999987765211 1112233444333 2233 44 4456
Q ss_pred CceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 178 ~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
.++||++||+|+.||++++|+||||+.+. +|+.++|.+|++.++... +++...++..+.||+|++|..+
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 243 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHH
Confidence 78999999999999999999999999888 799999999999887653 4456679999999999999754
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=229.81 Aligned_cols=205 Identities=20% Similarity=0.276 Sum_probs=144.4
Q ss_pred cccccccccCCchhHHHHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCC
Q 017204 24 NLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 102 (375)
Q Consensus 24 ~~~~~~~~~~i~~~~~d~~~~~~~k-~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge 102 (375)
+|+++.+...+...+.+.+.. ... ......|.+.|+++|||||||||||++|+++|++++.+++.++++++.+.+.|.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 457766655444444332211 110 111234778999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 017204 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179 (375)
Q Consensus 103 ~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V 179 (375)
++..++.+|..+ ....|+||||||+|.+..++..... .......+.++| +.++ +. ....++
T Consensus 83 ~~~~~~~~~~~a----~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~ 146 (262)
T 2qz4_A 83 GAARVRSLFKEA----RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHV 146 (262)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEECC-------------------CHHHHHHH-HHHH--------TC---CTTCCE
T ss_pred hHHHHHHHHHHH----HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCE
Confidence 999999999998 7788999999999999877642110 111223333333 2233 22 234679
Q ss_pred eEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCCCC------HHHHHHHhcCCChhhHHH
Q 017204 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA------DDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 180 ~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~v~------~~~la~lt~gf~gadl~~ 245 (375)
+||+|||.++.||++++|+|||+..++ +|+.++|.+|++.++...++. ...+++.+.||++++|..
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999999888 799999999999887655443 245888899999998864
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=1.2e-27 Score=245.72 Aligned_cols=175 Identities=22% Similarity=0.313 Sum_probs=150.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.|.++|+++|||||||||||++|++||++++.+|+.++++++.+++.|+.+..++.+|..| ...+|+||||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 4788999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 211 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~ 211 (375)
+.++++. ...... ..+...|+.+++ +. ....+++||+|||+++.||++++|+|||+..++ +|+.+
T Consensus 309 l~~~~~~-~~~~~~-~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKREK-THGEVE-RRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTTS-CCCHHH-HHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hcccccc-ccchHH-HHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 9988752 222233 344445556666 22 345679999999999999999999999999888 79999
Q ss_pred HHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 212 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 212 ~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
+|.+|++.++... +++.+.++..+.||++++|..
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence 9999999887654 455677999999999999864
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=1.3e-26 Score=216.66 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=156.9
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
....++|+++.+...+...+.+......-...+...++..|+|++|+||||||||+|+++++.+++.+++.+++..+.+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 34556678877765554444332221111122344578899999999999999999999999999999999999999888
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
+.|...+.++.+|+.+ ....|+++||||+|.+...+... .......+.+++++ ..++ +. ...
T Consensus 89 ~~~~~~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------g~---~~~ 152 (254)
T 1ixz_A 89 FVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKD 152 (254)
T ss_dssp CTTHHHHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-HHHH--------TC---CTT
T ss_pred HhhHHHHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-HHHh--------CC---CCC
Confidence 9998888899999988 66789999999999998766421 11122233344333 3333 33 344
Q ss_pred CCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 177 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
..++++++||+|+.||++++|++||++.++ .|+.++|.+|++.+.... +++...++..++||+|+||..
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 568999999999999999999999999988 799999999998776543 455677999999999999864
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=228.47 Aligned_cols=209 Identities=16% Similarity=0.262 Sum_probs=151.7
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+..+|+++.+...+...+.+.+........+......+++++|||||||||||++|+++|++++.+|+.++++++.++|.
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 34455666664444443333332222222111113467899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|+.++.++.+|..+ +...|+||||||+|.+...+..+ ......+.+++ |+..++ +. ......+++
T Consensus 159 g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~-lL~~l~--------~~-~~~~~~~v~ 223 (357)
T 3d8b_A 159 GEGEKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG-EHESSRRIKTE-FLVQLD--------GA-TTSSEDRIL 223 (357)
T ss_dssp THHHHHHHHHHHHH----HHTCSEEEEEETHHHHTBC-------CHHHHHHHH-HHHHHH--------C-----CCCCEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEeCchhhhccCCCC-cchHHHHHHHH-HHHHHh--------cc-cccCCCCEE
Confidence 99999999999988 78899999999999998877522 22233344443 444444 22 112346799
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CCHH---HHHHHhcCCChhhHHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~~~---~la~lt~gf~gadl~~~ 246 (375)
||+|||+++.|+++++| ||+..++ +|+.++|.+|++.++...+ ++.+ .|++.++||++++|..+
T Consensus 224 vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp EEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999 8987777 8999999999988876543 4443 38889999999998643
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=1.4e-26 Score=220.68 Aligned_cols=209 Identities=15% Similarity=0.240 Sum_probs=152.0
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+..+|+++.+...+...+.+.+........+......+++++||+||||||||++|+++|++++.+++.++++++.+++.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV 95 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence 44566887776555444444333332222221112246799999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|+.+..++.+|..+ ....|+||||||+|++...+... ......+..+. |+..++ +........+++
T Consensus 96 ~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~-ll~~l~--------~~~~~~~~~~v~ 161 (297)
T 3b9p_A 96 GDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTE-FLVEFD--------GLPGNPDGDRIV 161 (297)
T ss_dssp SCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSBCC------CCSHHHHHH-HHHHHH--------HCC------CEE
T ss_pred chHHHHHHHHHHHH----HHcCCcEEEeccHHHhccccccC-cchHHHHHHHH-HHHHHh--------cccccCCCCcEE
Confidence 99999999999988 78899999999999998876522 12223334433 334444 221112235799
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CCHH---HHHHHhcCCChhhHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQSIDF 245 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~~~---~la~lt~gf~gadl~~ 245 (375)
||+|||+++.|+++++| ||+..++ +|+.++|..|++.++...+ ++.+ .+++.+.||+|++|..
T Consensus 162 vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999998 8887777 8999999999988876543 4433 3888899999999864
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=1.4e-28 Score=266.35 Aligned_cols=178 Identities=21% Similarity=0.358 Sum_probs=146.5
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
..++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|+.| +...||||||||||
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid 580 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD 580 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChh
Confidence 34778899999999999999999999999999999999999999999999999999999999 88889999999999
Q ss_pred cccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CC
Q 017204 133 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 208 (375)
Q Consensus 133 ~i~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P 208 (375)
+++..+++... .....++++ .|++.++ +. ....+|+||+|||+++.||+|++|||||++.++ +|
T Consensus 581 ~l~~~r~~~~~~~~~~~~~v~~-~LL~~ld--------~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p 648 (806)
T 1ypw_A 581 SIAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp HHCCTTTTCCSHHHHHHHHHHH-HHHTTCC-----------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCC
T ss_pred hhhhhccCCCCCcchhHHHHHH-HHHHHHh--------cc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCC
Confidence 99988863221 122333444 3333333 44 455789999999999999999999999998888 79
Q ss_pred CHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 209 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+.++|.+|++.++... +++.+.+++.+++|+|++|..+
T Consensus 649 ~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l 690 (806)
T 1ypw_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 690 (806)
T ss_dssp CCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHH
Confidence 9999999999998664 4556668999999999999643
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=4.4e-28 Score=227.88 Aligned_cols=210 Identities=18% Similarity=0.224 Sum_probs=155.5
Q ss_pred cccccccccccccCCchhHHHHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~-k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
...++|+++.+...+...+.+.+.. +. ...+...+.+.|+++|||||||||||++|+++|++++.+++.++++.+.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4456678888887777776553322 21 112223477889999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~ 175 (375)
+.|.+++.++.+|..| ....|+||||||+|.+...+..+.. .....+.+++ | +. .+++. ...
T Consensus 84 ~~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~-l---l~-----~l~~~--~~~ 148 (268)
T 2r62_A 84 FVGLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ-L---LA-----EMDGF--GSE 148 (268)
T ss_dssp CSSSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTTT-T---TT-----TTTCS--SCS
T ss_pred hcchHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHH-H---HH-----HhhCc--ccC
Confidence 9999888888999988 7788999999999999877531110 0000111111 1 11 12222 123
Q ss_pred CCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 176 ~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
..+++||+|||.++.||++++|+|||+..++ .|+.++|.+|++.++... +++.+.+++.+.||+|++|..
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~ 224 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLAN 224 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 4568999999999999999999999998877 799999999999887653 445666888999999988753
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=227.94 Aligned_cols=209 Identities=17% Similarity=0.247 Sum_probs=142.8
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
+..+|+++++...+...+.+.+........+......+++++|||||||||||++|++||++++.+|+.++++++.+.|.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 34456777665544444443333222222111112346789999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~ 180 (375)
|+.+..++.+|..+ +...|+||||||||.++..+... ......++... |+..++ +. ......+|+
T Consensus 190 g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~-ll~~l~--------~~-~~~~~~~v~ 254 (389)
T 3vfd_A 190 GEGEKLVRALFAVA----RELQPSIIFIDQVDSLLCERREG-EHDASRRLKTE-FLIEFD--------GV-QSAGDDRVL 254 (389)
T ss_dssp --CHHHHHHHHHHH----HHSSSEEEEEETGGGGC---------CTHHHHHHH-HHHHHH--------HH-C-----CEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEECchhhcccCCCc-cchHHHHHHHH-HHHHhh--------cc-cccCCCCEE
Confidence 99999999999998 88899999999999998876522 22233444443 334444 22 112346799
Q ss_pred EEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCCC--CCHH---HHHHHhcCCChhhHHHH
Q 017204 181 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 181 VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~~--v~~~---~la~lt~gf~gadl~~~ 246 (375)
||+|||+++.||++++| ||+..++ +|+.++|.+|++.++...+ ++.+ .|+..++||++++|..+
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999 8987666 7999999999998886643 4433 47888999999998643
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1.8e-25 Score=212.21 Aligned_cols=209 Identities=18% Similarity=0.228 Sum_probs=155.7
Q ss_pred ccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCC
Q 017204 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~ 100 (375)
..++|+++.+...+...+.+.....-....+...++..|+|++|+||||||||+|+++++..++.+++.+++..+.+.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 56677887776555444433222111112233457888999999999999999999999999999999999999988888
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 101 Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
|...+.++.+|+.+ ....|+++||||+|.+...+.... ......+.+.+++ ..++ +. .....
T Consensus 115 ~~~~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-~~ls--------gg---~~~~~ 178 (278)
T 1iy2_A 115 GVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTA 178 (278)
T ss_dssp THHHHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-HHHT--------TC---CTTCC
T ss_pred hHHHHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-HHHh--------CC---CCCCC
Confidence 98888899999988 667899999999999876654210 1112223333333 2233 33 34456
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
++++++||+|+.||++++|++||++.++ .|+.++|.+|++.+.... .++...++..++||+|++|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 251 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 251 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 8999999999999999999999999888 799999999998876543 455667999999999999863
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=2.5e-23 Score=225.19 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=172.1
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~-~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
...++|+++.+.......+.+.+....... .+...+++++.++||+||||||||++|++||.+++.+++.++++++.++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 445677888887777777776665544433 3345689999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
+.|+.++.++.+|..+ ....|++|||||+|.+...++. ...... +.+...|+.+++ +. ....+
T Consensus 278 ~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~-~~~~~~-~~~~~~Ll~ll~--------g~---~~~~~ 340 (806)
T 1ypw_A 278 LAGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGEVE-RRIVSQLLTLMD--------GL---KQRAH 340 (806)
T ss_dssp STTHHHHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTSC-CCSHHH-HHHHHHHHHHHH--------SS---CTTSC
T ss_pred hhhhHHHHHHHHHHHH----HhcCCcEEEeccHHHhhhcccc-ccchHH-HHHHHHHHHHhh--------hh---ccccc
Confidence 9999999999999999 7788999999999999988752 222333 334445556666 33 34577
Q ss_pred ceEEEEeCCCCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 179 V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+++|+|||+++.||+++.|++||++.+. .|+.++|.+|++.+.... +.+...++..+.+|+++++..+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l 414 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHH
Confidence 9999999999999999999999999888 799999999998887654 4556779999999999998643
No 30
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.89 E-value=7.1e-24 Score=170.79 Aligned_cols=104 Identities=84% Similarity=1.305 Sum_probs=97.1
Q ss_pred CCCHHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHhccCcchhhhhhcCcCCCCCCCC
Q 017204 207 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ 286 (375)
Q Consensus 207 ~P~~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~~~al~~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 286 (375)
+-++++|..|++.++..++++.+++.++++.|++++||||+|||+++|+++|++||..+|.++++++|+++++++|.|++
T Consensus 4 ~~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~ 83 (107)
T 3thg_A 4 PFTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQ 83 (107)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHhHHHHHHhhhhhhh
Q 017204 287 PRMTMEKLLEYGNMIVQEQENVKR 310 (375)
Q Consensus 287 ~~~~~~~ll~~~~~~~~e~~~~~~ 310 (375)
|.+|+++|+++|+++++||++|++
T Consensus 84 P~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 84 PKMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----
T ss_pred CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999864
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.88 E-value=7.1e-25 Score=222.87 Aligned_cols=175 Identities=10% Similarity=0.018 Sum_probs=116.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg--~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
+..+|+++|||||||||||++|+++|++++ .+|+.++++++.++|+|++++ +++.|..|.. .+...||||||||+|
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid 136 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVT 136 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechh
Confidence 666889999999999999999999999999 999999999999999999998 8899987621 135789999999999
Q ss_pred cccCCCCCCcccc---hhhH---------------HHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 017204 133 AGAGRMGGTTQYT---VNNQ---------------MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194 (375)
Q Consensus 133 ~i~~~r~~~~~~~---~~~~---------------~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~A 194 (375)
+++++|+...... ...+ +..+ ++..++ .........|+|++|||+++.+|++
T Consensus 137 ~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-ll~~l~---------~~~~~~~~~v~i~attn~~~~ld~a 206 (456)
T 2c9o_A 137 ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPS-IFESLQ---------KERVEAGDVIYIEANSGAVKRQGRC 206 (456)
T ss_dssp EEEEC--------------CEEEEEEETTEEEEEEECHH-HHHHHH---------HTTCCTTEEEEEETTTCCEEEEEEE
T ss_pred hcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHH-HHHHHh---------hccCCCCCEEEEEcCCCCcccCChh
Confidence 9998876321100 0000 0111 111111 0011223446777999999999999
Q ss_pred hcCCCcceE----EEeCCC--HHHHHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHHH
Q 017204 195 LIRDGRMEK----FYWAPT--REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 195 LlR~gRfd~----~i~~P~--~~~R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~~ 246 (375)
++|+||||+ .+..|+ .++|.+|++.+... +.+.++..++| |+|+..+
T Consensus 207 ~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~~l 259 (456)
T 2c9o_A 207 DTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDILSM 259 (456)
T ss_dssp TTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC--------------
T ss_pred hcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHHHH
Confidence 999999998 333564 47799998876643 45557777777 7777543
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=5.8e-20 Score=173.31 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=118.4
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChH----HHHHHHHHHHHHHHHhCCc
Q 017204 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKM 123 (375)
Q Consensus 48 k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~----~~ir~~F~~A~~~~~~~~p 123 (375)
.+.+...+..++.++||+||||||||++|+++|++++.+++.+++++ .+.|.+. ..++.+|..+ ....+
T Consensus 53 ~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~ 125 (272)
T 1d2n_A 53 VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQL 125 (272)
T ss_dssp HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSE
T ss_pred HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCC
Confidence 33444456678899999999999999999999999999999987764 3455443 5677778777 67889
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceE
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~ 203 (375)
+||||||+|.+++.+..+ ....+ .+.++|..+++ +. .....+++||+|||.++.+++..++ +||+.
T Consensus 126 ~vl~iDEid~l~~~~~~~--~~~~~-~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~ 191 (272)
T 1d2n_A 126 SCVVVDDIERLLDYVPIG--PRFSN-LVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFST 191 (272)
T ss_dssp EEEEECCHHHHTTCBTTT--TBCCH-HHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSE
T ss_pred cEEEEEChhhhhccCCCC--hhHHH-HHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccce
Confidence 999999999998765421 11222 33345545544 11 1234568899999999999884333 59999
Q ss_pred EEeCCCHHHHHHhhhhhcCCCCCCHHH---HHHHhcCC
Q 017204 204 FYWAPTREDRIGVCKGIFRNDNVADDD---IVKLVDTF 238 (375)
Q Consensus 204 ~i~~P~~~~R~~Il~~~l~~~~v~~~~---la~lt~gf 238 (375)
.+.+|...+|.+|...+.....++.+. +++.+.||
T Consensus 192 ~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred EEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 999887777766655544444455544 45555554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.5e-18 Score=165.70 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=116.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC-------CceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeee
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg-------~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
.+++..+||+||||||||++|+++|++++ .+++.++++.+.+.+.|.....++..|..+ .++||||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 45567899999999999999999999983 389999999999999999999888888876 4689999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCcceE
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 203 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~ 203 (375)
||+|.+...+++. .....+...|+++++ ....++.||+|||... .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~----~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNER----DYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCcc----cccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 9999998765421 112334445666666 2346789999998754 35789987 8987
Q ss_pred EEe--CCCHHHHHHhhhhhcCCCC--CCHHHHH
Q 017204 204 FYW--APTREDRIGVCKGIFRNDN--VADDDIV 232 (375)
Q Consensus 204 ~i~--~P~~~~R~~Il~~~l~~~~--v~~~~la 232 (375)
.+. .|+.+++.+|++.++...+ ++.+.+.
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 230 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777 7999999999988886543 4444433
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=2.5e-19 Score=181.39 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
.+|+++||+||||||||++|+++|++++.+|+.++++.+.+ +|+|+ .++.++.+|..|.. ++++||+|++
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~--------~~~~De~d~~ 119 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK--------LVRQQEIAKN 119 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH--------HHHHHHHHSC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHh--------cchhhhhhhh
Confidence 36789999999999999999999999999999999999988 69995 89999999999832 3468999987
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE-eCCCCCCChhhcCCCcceEEEe--CCCHH
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE 211 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T-TN~~~~Ld~ALlR~gRfd~~i~--~P~~~ 211 (375)
..... .....++++++| ..+| |.. ....| +++ ||+++.||+||+|+||||+.++ +|+..
T Consensus 120 ~~~~~----~~~e~rvl~~LL-~~~d--------g~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 120 RARAE----DVAEERILDALL-PPAK--------NQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccch----hhHHHHHHHHHH-HHhh--------ccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 64432 223344444333 3333 552 22333 555 9999999999999999999999 68776
Q ss_pred -HHHHhh
Q 017204 212 -DRIGVC 217 (375)
Q Consensus 212 -~R~~Il 217 (375)
.|.+|+
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 677775
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=2.2e-18 Score=178.94 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=112.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeeee
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
++..+||+||||||||++|++||..++.+++.++.+.+.+ .|+|.....+...|..| ....| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 5678999999999999999999999999999988876543 56777777777777776 44445 9999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc--cCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 206 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~--~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~ 206 (375)
||+|++...+.+. ....|+++++..++..+...+. ..+..+++||+|||+++.|+++|+| ||+.+..
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999998765321 2345667776443333222211 1233789999999999999999998 8975444
Q ss_pred -CCCHHHHHHhhhhhcCC------------CCCCHHHHHHHhcCCCh
Q 017204 207 -APTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG 240 (375)
Q Consensus 207 -~P~~~~R~~Il~~~l~~------------~~v~~~~la~lt~gf~g 240 (375)
.|+.+++.+|++.++.. ..++.+.+..++..|++
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 79999999998887621 13456667777666654
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.72 E-value=3e-18 Score=168.45 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=113.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~-~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
.++.++||+||||||||++|++||+.++.+|+.++++.+... |+|.. ...++..|..+...+....++||||||+|++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 367899999999999999999999999999999999988754 77775 5667777776533334456899999999999
Q ss_pred cCCCCCC-cccchhhHHHHHHHHHhhcCCccccCCCc---------cccCCCCCceEEEEeCCC----------CC----
Q 017204 135 AGRMGGT-TQYTVNNQMVNATLMNIADNPTCVQLPGM---------YNKEENPRVPIIVTGNDF----------ST---- 190 (375)
Q Consensus 135 ~~~r~~~-~~~~~~~~~v~~~L~~lld~~~~v~l~~~---------~~~~~~~~V~VI~TTN~~----------~~---- 190 (375)
...+.+. .......+.++..|+.+++ ...+.+... .......++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 8876522 2233344457778888888 222111110 001234566777777743 11
Q ss_pred -------------------------------CChhhcCCCcceEEEe--CCCHHHHHHhhhh
Q 017204 191 -------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCKG 219 (375)
Q Consensus 191 -------------------------------Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~ 219 (375)
+.|+|+. ||+.++. +|+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 7788885 9999886 7899999999875
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=1.3e-17 Score=158.36 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=113.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc-CCCCC-hHHHHHHHHHHHHHHHH-hCCceeeeeccccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLMINDLDA 133 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~ 133 (375)
..|.++||+||||||||++|+++|+.++.+++.++++.+.+ .|+|. ....++.+|..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 46789999999999999999999999999999999998876 66664 34567777764311112 23478999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE----eCCCCCCChhhcCCCcceEEEe--C
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYW--A 207 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T----TN~~~~Ld~ALlR~gRfd~~i~--~ 207 (375)
+...... .........++..|+.+++........+ .....++++|++ ++.+..++++|++ ||+..+. .
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9877642 2233444555667777777321111111 134467889998 4678899999986 8987666 6
Q ss_pred CCHHHHHHhhhh
Q 017204 208 PTREDRIGVCKG 219 (375)
Q Consensus 208 P~~~~R~~Il~~ 219 (375)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999874
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=1.2e-16 Score=155.98 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=99.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCccccCCCCC------------------------------
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGE------------------------------ 102 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s~~~Ge------------------------------ 102 (375)
+..+++++||+||||||||++|+++|++++. +++.+++..+.+.+.+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 4455789999999999999999999999985 77888877655444333
Q ss_pred -------------------hHHHHHHHHHHHHHHHH-hC----CceeeeecccccccCCCCCCcccchhhHHHHHHHHHh
Q 017204 103 -------------------PAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158 (375)
Q Consensus 103 -------------------~~~~ir~~F~~A~~~~~-~~----~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~l 158 (375)
....++..|..+..... .+ .|+||||||+|.+.. .....|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence 34456666666533222 22 278999999997742 122344455
Q ss_pred hcCCccccCCCccccCCCCCceEEEEe-----------CCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCC--
Q 017204 159 ADNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND-- 224 (375)
Q Consensus 159 ld~~~~v~l~~~~~~~~~~~V~VI~TT-----------N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~-- 224 (375)
++ .....+++++|. |.+..++++|++ ||..+.. .|+.+++.+|++..+...
T Consensus 213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 44 222334444443 358889999998 7777444 789999999998777543
Q ss_pred CCCHHH
Q 017204 225 NVADDD 230 (375)
Q Consensus 225 ~v~~~~ 230 (375)
.++.+.
T Consensus 278 ~~~~~~ 283 (368)
T 3uk6_A 278 EMSEDA 283 (368)
T ss_dssp CBCHHH
T ss_pred CCCHHH
Confidence 344444
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.9e-17 Score=142.51 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
..+..++|+||||||||++|+++++++ +.+++.++.+.+. ..+.|.....++.++..+ .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 456789999999999999999999996 7788888877765 345555666677777654 1356788
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 199 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~g 199 (375)
||||||+|.+...+....... +...|..+++ ..++.+|++||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~-----~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAMD-----AGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CCC-----CHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchHH-----HHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 999999999976543111111 1222322222 24578999999887 78999998
Q ss_pred cceEEEe-CCCHHHHHHhhh
Q 017204 200 RMEKFYW-APTREDRIGVCK 218 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~ 218 (375)
||+.+.. .|+.++|.+|++
T Consensus 176 r~~~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAILR 195 (195)
T ss_dssp TEEEEECCCCCHHHHHTTCC
T ss_pred HhceeecCCCCHHHHHHHhC
Confidence 8885433 899999998864
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.67 E-value=9.6e-16 Score=148.27 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.++..+||+||||||||++|+++|++++.+|+.++++.+. ....+...+. ....+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILT------NLSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHH------TCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHH------hccCCCEEEEechhhcCH
Confidence 4567899999999999999999999999999999987653 2223333332 246789999999998742
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-----cccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~-----~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
. .+..|+..+++.....+.+. ......+++.+|++||+...++++|++ ||+..+. .|+
T Consensus 121 ~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 A-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp H-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 1 23444555552211111000 001122468999999999999999997 8877777 789
Q ss_pred HHHHHHhhhhhcCCCC--CCHHHHHHHhcCCCh
Q 017204 210 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 240 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~~--v~~~~la~lt~gf~g 240 (375)
.+++..|++.+....+ ++.+.+..+...+.|
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRS 218 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc
Confidence 9999999988776544 555556666654444
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=1.2e-15 Score=147.24 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=108.8
Q ss_pred cccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC
Q 017204 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 98 (375)
Q Consensus 22 ~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~ 98 (375)
.|+|++++.+.. .......++.++..++ +.+.+++||||||||||++|+++++++ +.+++.+++.++.+.
T Consensus 7 ~~~f~~fv~g~~------~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 7 KYTLENFIVGEG------NRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp TCCSSSCCCCTT------THHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCcccCCCCCc------HHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 456677653221 1223334555555444 456789999999999999999999998 899999998776533
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 017204 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~ 178 (375)
+.+.........|... ...++||||||+|.+.+++. .++.+..+++ .. .....
T Consensus 80 ~~~~~~~~~~~~~~~~-----~~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~--------~~---~~~~~ 132 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNM-----YKSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN--------TL---YLLEK 132 (324)
T ss_dssp HHHHHHHTCHHHHHHH-----HHTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH--------HH---HHTTC
T ss_pred HHHHHHcCcHHHHHHH-----hcCCCEEEEcCcccccCChH-----------HHHHHHHHHH--------HH---HHCCC
Confidence 2221111111222221 23489999999998865421 1112222222 01 11223
Q ss_pred ceEEEEeCCCC---CCChhhcCCCcce--EEEe-CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCC
Q 017204 179 VPIIVTGNDFS---TLYAPLIRDGRME--KFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 238 (375)
Q Consensus 179 V~VI~TTN~~~---~Ld~ALlR~gRfd--~~i~-~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf 238 (375)
.+||+++|.+. .++++|++ ||. ..+. .|+.++|.+|++.++... .++.+.+..+....
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVS--RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred eEEEEecCChHHHHHhhhHhhh--cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 45666666655 68999987 774 4555 348999999998887543 45665554444443
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.62 E-value=1.9e-15 Score=144.75 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=102.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 35678999999999999999999999999999988876532 22233333221 35789999999997643
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc-----cCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~-----~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
. .+..|+.+++.....-+.+... .....++.+|+|||++..++++|++ ||+..+. .|+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 2 1233444444211100101100 0122468999999999999999986 8865555 789
Q ss_pred HHHHHHhhhhhcCCC--CCCHHHHHHHhc
Q 017204 210 REDRIGVCKGIFRND--NVADDDIVKLVD 236 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~--~v~~~~la~lt~ 236 (375)
.+++.++++.++... .++.+.+..+..
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGR 198 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999988877544 455554444433
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=1.2e-15 Score=133.02 Aligned_cols=127 Identities=14% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHH-hCCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM 123 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~-~~~p 123 (375)
..+..+||+||||||||++|+++++++ +.+++.++...+. ..+.|.....++.++..+ . ...|
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence 446789999999999999999999997 7778888776654 334455556667776665 4 3478
Q ss_pred eeeeecccccccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcC
Q 017204 124 CCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 197 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~-~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR 197 (375)
+||||||+|.+.+.+. ...+... ...|..+++ ..++.+|++||.+. .++++++|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~-----~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALDA-----GNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCCT-----HHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred eEEEEeCHHHhcccccccccchHH-----HHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999999999976543 1111111 222322222 24678999999875 68999998
Q ss_pred CCcceEEEe-CCC
Q 017204 198 DGRMEKFYW-APT 209 (375)
Q Consensus 198 ~gRfd~~i~-~P~ 209 (375)
||+.+.. .|+
T Consensus 177 --R~~~i~i~~p~ 187 (187)
T 2p65_A 177 --RFQQILVEQPS 187 (187)
T ss_dssp --HEEEEECCSCC
T ss_pred --hcCcccCCCCC
Confidence 9986333 453
No 44
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.58 E-value=3.8e-15 Score=146.82 Aligned_cols=139 Identities=17% Similarity=0.298 Sum_probs=83.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
+++..+||+||||||||++|+++|+.++.+|+.++++.+. ++|.|.. ...+...|..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 4567899999999999999999999999999999988875 5677764 4556666665422233557899999999999
Q ss_pred cCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCC--C-c------cccCCCCCceEEEEeCCCCCCChhhcC
Q 017204 135 AGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLP--G-M------YNKEENPRVPIIVTGNDFSTLYAPLIR 197 (375)
Q Consensus 135 ~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~v~l~--~-~------~~~~~~~~V~VI~TTN~~~~Ld~ALlR 197 (375)
...+++.. ........++..|+.+++... +.++ + . .......++++|+||| .+.|++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~ 220 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSL-VNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK 220 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCE-EC---------------CEECTTCEEEEEEC-CTTHHHHTTT
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccc-eecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH
Confidence 87754211 112222336677778887331 0000 0 0 0012236678899998 5666666665
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=3.2e-14 Score=135.46 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=94.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCC------------CCChHHHHHHHHHHHHHHHHhCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------------AGEPAKLIRQRYREAADIIKKGK 122 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~------------~Ge~~~~ir~~F~~A~~~~~~~~ 122 (375)
++..+||+||||||||++|+++|+.+ +.+++.++++.+.... .|.... ..+..+ +....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~---~~~~~ 119 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEA---VRRRP 119 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHH---HHHCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHH---HHhCC
Confidence 34579999999999999999999998 4568888877664321 111110 112222 24555
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC---------------
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--------------- 187 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~--------------- 187 (375)
.+||||||+|.+.. .++..|+.++++..... .........+++||+|||.
T Consensus 120 ~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~ 184 (311)
T 4fcw_A 120 YSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY 184 (311)
T ss_dssp SEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred CeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence 68999999997632 23455666666332111 1111123357889999999
Q ss_pred -----------CCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC
Q 017204 188 -----------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 188 -----------~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~ 222 (375)
...++++|+. ||+..+. +|+.+++..|++.++.
T Consensus 185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 185 ERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp STHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 5578899985 9987776 7899999999877664
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.9e-15 Score=144.18 Aligned_cols=130 Identities=19% Similarity=0.318 Sum_probs=93.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeeeecccccc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAG 134 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-~~~p~IL~iDEiD~i 134 (375)
.+.|..+|++||||||||++|+++|++++.+++.++++... ...++..+..+..... .+.+.||||||+|.+
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS 117 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence 35677899999999999999999999999999999987532 4556665554311101 236899999999987
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHH
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 213 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R 213 (375)
.+. ..+..|+.+++ ....++.+|+|||.+..++++|++ ||..+.. .|+.++|
T Consensus 118 ~~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~ 170 (324)
T 3u61_B 118 GLA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRVITFGQPTDEDK 170 (324)
T ss_dssp GGH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEEEECCCCCHHHH
T ss_pred CcH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcEEEeCCCCHHHH
Confidence 521 12334555555 223457899999999999999998 7765444 7999988
Q ss_pred HHhhhh
Q 017204 214 IGVCKG 219 (375)
Q Consensus 214 ~~Il~~ 219 (375)
.+|++.
T Consensus 171 ~~il~~ 176 (324)
T 3u61_B 171 IEMMKQ 176 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766443
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.57 E-value=5.4e-15 Score=150.72 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=97.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
..+.++||+||||||||++|+++|..+ +.+++.++++ .+|.|+.+..++.+|..+ ....|+||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iL 271 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEE
Confidence 345678999999999999999999997 7788888877 778888888899999988 77889999
Q ss_pred eecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCcc
Q 017204 127 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 201 (375)
Q Consensus 127 ~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRf 201 (375)
||| +.. -....|... -..+.+.+|++||... .+|++|+| ||
T Consensus 272 fiD------~~~-----------~a~~~L~~~---------------L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf 317 (468)
T 3pxg_A 272 FID------AAI-----------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (468)
T ss_dssp EEC------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEe------Cch-----------hHHHHHHHh---------------hcCCCEEEEecCCHHHHHHHhhcCHHHHH--hC
Confidence 999 111 011222111 1234689999999988 79999999 99
Q ss_pred eEEEe-CCCHHHHHHhhhhhcCC----CC--CCHHH---HHHHhcCCCh
Q 017204 202 EKFYW-APTREDRIGVCKGIFRN----DN--VADDD---IVKLVDTFPG 240 (375)
Q Consensus 202 d~~i~-~P~~~~R~~Il~~~l~~----~~--v~~~~---la~lt~gf~g 240 (375)
..+.. .|+.+++.+|++.+... .+ ++.+. ++.++.+|..
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred ccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 87444 89999999999877654 23 33333 5555555544
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=1.5e-14 Score=146.79 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=95.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~ 139 (375)
..+|||||||||||++|++||+.++.+|+.+++.. .+.+.++.+|..+........++||||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 58999999999999999999999999999988643 34567888998885555567899999999998754321
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhcCCCcceEEEe-CCCHHHHHHh
Q 017204 140 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 216 (375)
Q Consensus 140 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT--N~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~I 216 (375)
..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..|
T Consensus 124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 12333333 1346777777 555689999998 7776555 7899999999
Q ss_pred hhhhcCC
Q 017204 217 CKGIFRN 223 (375)
Q Consensus 217 l~~~l~~ 223 (375)
++..+..
T Consensus 174 l~~~l~~ 180 (447)
T 3pvs_A 174 LTQAMED 180 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8877654
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=7.7e-15 Score=148.51 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=97.0
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHHHHHH
Q 017204 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII 118 (375)
Q Consensus 44 ~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~ 118 (375)
...++.+...++. +..++||||||||||+||++|++++ +..++.+++..+...+.+.........|...
T Consensus 117 ~~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~---- 190 (440)
T 2z4s_A 117 YHAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK---- 190 (440)
T ss_dssp HHHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHH----
Confidence 3444555555553 6789999999999999999999998 8888999887654222111000000112221
Q ss_pred HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCC---CChh
Q 017204 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAP 194 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~~---Ld~A 194 (375)
....+.||||||+|.+.+... . ++.|+.+++ .. .. .+..||+||+. +.. ++++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~--~---------q~~l~~~l~--------~l---~~-~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTG--V---------QTELFHTFN--------EL---HD-SGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHH--H---------HHHHHHHHH--------HH---HT-TTCEEEEEESSCGGGCSSCCHH
T ss_pred hcCCCCEEEEeCcccccCChH--H---------HHHHHHHHH--------HH---HH-CCCeEEEEECCCHHHHHHHHHH
Confidence 122789999999998876421 1 112222222 01 11 12345555554 444 8899
Q ss_pred hcCCCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhc
Q 017204 195 LIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVD 236 (375)
Q Consensus 195 LlR~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~ 236 (375)
|++ ||. ..+. .|+.++|.+|++..+... .++.+.+..++.
T Consensus 248 L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~ 293 (440)
T 2z4s_A 248 LVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_dssp HHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 987 664 4444 799999999998876532 345544444433
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.7e-14 Score=138.87 Aligned_cols=138 Identities=11% Similarity=0.073 Sum_probs=94.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccccC----------------CCCChHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------------NAGEPAKLIRQ 109 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~ 109 (375)
...|.+++||||||||||++++++++++ ...++.+++..+.+. ..|.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3577899999999999999999999998 356778887765432 12445667777
Q ss_pred HHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 017204 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 189 (375)
Q Consensus 110 ~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 189 (375)
.|.... -....++||||||+|.+. + + .. |.++++ |......++.||+++|..+
T Consensus 122 ~f~~~~--~~~~~~~ii~lDE~d~l~---~---q-----~~----L~~l~~----------~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 122 YITNVP--KAKKRKTLILIQNPENLL---S---E-----KI----LQYFEK----------WISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSC--GGGSCEEEEEEECCSSSC---C---T-----HH----HHHHHH----------HHHCSSCCEEEEEECCSSC
T ss_pred HHHHhh--hccCCceEEEEecHHHhh---c---c-----hH----HHHHHh----------cccccCCcEEEEEEecCcc
Confidence 777520 025678999999999987 1 1 22 222222 1113557899999999987
Q ss_pred CCCh----hhcCCCcce--EEEe-CCCHHHHHHhhhhhcC
Q 017204 190 TLYA----PLIRDGRME--KFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 190 ~Ld~----ALlR~gRfd--~~i~-~P~~~~R~~Il~~~l~ 222 (375)
..+. ++.. ||. ++.+ +++.++..+|++..+.
T Consensus 175 ~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 6443 3333 664 3333 7899999999776553
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.55 E-value=6.4e-15 Score=160.33 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=92.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHh-CCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKM 123 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~-~~p 123 (375)
+.+.++||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|..+ .. ..|
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~ 264 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGE 264 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSS
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCC
Confidence 345678999999999999999999997 8889999998886 578899999999999887 54 478
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----CCChhhcCCC
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDG 199 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~----~Ld~ALlR~g 199 (375)
+||||||+|.+.+....... ..+...|..++. ...+.+|++||.++ .+|++|+|
T Consensus 265 ~iL~IDEi~~l~~~~~~~g~-----~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r-- 322 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEGA-----VDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER-- 322 (854)
T ss_dssp EEEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred eEEEEecHHHHhccCCccch-----HHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--
Confidence 99999999999866532111 112222333332 24578999999774 58999998
Q ss_pred cceEEEe-CCCHHHHHHhhhhhcC
Q 017204 200 RMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
||+.+.. .|+.+++.+|++.++.
T Consensus 323 Rf~~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCCEEECCCCHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHhhhh
Confidence 8887444 8999999999886654
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=3e-14 Score=152.75 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 124 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~F~~A~~~~~~~~p~ 124 (375)
+.+.++||+||||||||++|+++|..+ +..++.++.+.+. .++.|+.+..++.+|..+ ....++
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~ 280 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNS 280 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCe
Confidence 456789999999999999999999997 6677778777776 568899999999999888 767789
Q ss_pred eeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhcCCC
Q 017204 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDG 199 (375)
Q Consensus 125 IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-----~~Ld~ALlR~g 199 (375)
||||||+|.+.+..+.... .......|..+ .....+.+|++||.+ -.+|++|.|
T Consensus 281 iL~IDEi~~l~~~~~~~~~----~~~~~~~L~~~---------------l~~~~~~~I~at~~~~~~~~~~~d~aL~~-- 339 (758)
T 1r6b_X 281 ILFIDEIHTIIGAGAASGG----QVDAANLIKPL---------------LSSGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_dssp EEEETTTTTTTTSCCSSSC----HHHHHHHHSSC---------------SSSCCCEEEEEECHHHHHCCCCCTTSSGG--
T ss_pred EEEEechHHHhhcCCCCcc----hHHHHHHHHHH---------------HhCCCeEEEEEeCchHHhhhhhcCHHHHh--
Confidence 9999999999876542111 11222233211 223568899999964 368899998
Q ss_pred cceEEEe-CCCHHHHHHhhhhhcC
Q 017204 200 RMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 200 Rfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
||+.+.. .|+.++|.+|++.+..
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHHH
Confidence 8986444 8999999999887653
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.55 E-value=7.8e-14 Score=124.23 Aligned_cols=141 Identities=19% Similarity=0.244 Sum_probs=92.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHHHHH--HHhCCceeeeeccccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 133 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~--~~~~~p~IL~iDEiD~ 133 (375)
.++|+||||||||++|+++++++ ...++.++++... ....++..+...... .....+.||||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 3456767665432 122333333322000 0136789999999998
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~ 212 (375)
+... ....|..+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 6432 1233444444 223567899999999999999987 6774333 688999
Q ss_pred HHHhhhhhcCCC--CCCHHHHHHHh
Q 017204 213 RIGVCKGIFRND--NVADDDIVKLV 235 (375)
Q Consensus 213 R~~Il~~~l~~~--~v~~~~la~lt 235 (375)
..++++.++... .++.+.+..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~ 190 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALI 190 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999988776533 35555444443
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-14 Score=155.28 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
+.+..+||+||||||||++|+++|+.+ +..++.++. ..+|.|+.+..++.+|..+ ....|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEE
Confidence 455679999999999999999999997 778887776 5678899999999999998 77889999
Q ss_pred eecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCcc
Q 017204 127 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 201 (375)
Q Consensus 127 ~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRf 201 (375)
||| +.. -....|... -....+.+|+|||... .+|++|+| ||
T Consensus 272 fiD------~~~-----------~~~~~L~~~---------------l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AAI-----------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cch-----------hHHHHHHHH---------------HhcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 110 011122111 1245689999999998 79999999 89
Q ss_pred eEEEe-CCCHHHHHHhhhhhcCC
Q 017204 202 EKFYW-APTREDRIGVCKGIFRN 223 (375)
Q Consensus 202 d~~i~-~P~~~~R~~Il~~~l~~ 223 (375)
..+.. .|+.+++.+|++.+...
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 76433 89999999999877654
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=6.9e-14 Score=149.97 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=98.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceeeeec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLMIN 129 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~-----~~Ge~~~~i-----r~~F~~A~~~~~~~~p~IL~iD 129 (375)
..+||+||||||||++|+++|+.++.+++.++++++..+ .+|.+...+ ..+.+. ++...++|||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEEEe
Confidence 469999999999999999999999999999998887653 333221111 112222 256668999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--------------------
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------------- 189 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-------------------- 189 (375)
|||++.. .+...|++++++.....-.| ......+++||+|||...
T Consensus 565 Ei~~~~~-------------~~~~~Ll~~le~~~~~~~~g--~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAHP-------------DVFNILLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSCH-------------HHHHHHHHHHHHSEEEETTT--EEEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccCH-------------HHHHHHHHHhcCcEEEcCCC--CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 9997532 24456667777322111011 112236789999999854
Q ss_pred -----CCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC
Q 017204 190 -----TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 190 -----~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~ 222 (375)
.++|+|+. |||.++. .|+.+++..|++.++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888886 9987777 6889999999887664
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-13 Score=148.20 Aligned_cols=136 Identities=11% Similarity=0.155 Sum_probs=96.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
.+||+||||||||++|+++|+.+ +.+|+.++++++.+.+..... .+++.. +...++||||||||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~~~-- 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEKAH-- 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGGSC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccccC--
Confidence 69999999999999999999997 678999999999988776521 122222 56677899999998763
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC------------CChhhcCCCcceEEE
Q 017204 138 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRMEKFY 205 (375)
Q Consensus 138 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~------------Ld~ALlR~gRfd~~i 205 (375)
..+...|++++++.......| ......+++||+|||.+.. +.|+|+. ||+..+
T Consensus 593 -----------~~~~~~Ll~~le~g~~~~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i 657 (758)
T 3pxi_A 593 -----------PDVFNILLQVLEDGRLTDSKG--RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEII 657 (758)
T ss_dssp -----------HHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEE
T ss_pred -----------HHHHHHHHHHhccCeEEcCCC--CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEE
Confidence 234456667777322111111 1234567899999997655 7888885 997777
Q ss_pred e--CCCHHHHHHhhhhhc
Q 017204 206 W--APTREDRIGVCKGIF 221 (375)
Q Consensus 206 ~--~P~~~~R~~Il~~~l 221 (375)
. +|+.+++.+|++.++
T Consensus 658 ~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ECC--CHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 7 688899999987655
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.8e-14 Score=148.43 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=92.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChH-------HHHHHHHHHHHHH-HHhCCceeeee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADI-IKKGKMCCLMI 128 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~-------~~ir~~F~~A~~~-~~~~~p~IL~i 128 (375)
.+++++||+||||||||++|+++|++++..++.++++.+.+.+..+.. ..++..|..+.+. .....++||||
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence 367899999999999999999999999999999999877543211100 0011222221000 01367899999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCCCcceEEEe
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW 206 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~gRfd~~i~ 206 (375)
||+|.+..... . . ...|.++++ . .+++||++||... .++ ++.| |+..+..
T Consensus 155 DEid~l~~~~~-----~----~-l~~L~~~l~-------------~--~~~~iIli~~~~~~~~l~-~l~~--r~~~i~f 206 (516)
T 1sxj_A 155 DEVDGMSGGDR-----G----G-VGQLAQFCR-------------K--TSTPLILICNERNLPKMR-PFDR--VCLDIQF 206 (516)
T ss_dssp CSGGGCCTTST-----T----H-HHHHHHHHH-------------H--CSSCEEEEESCTTSSTTG-GGTT--TSEEEEC
T ss_pred ECCCccchhhH-----H----H-HHHHHHHHH-------------h--cCCCEEEEEcCCCCccch-hhHh--ceEEEEe
Confidence 99999876421 0 1 123334433 1 2345666666543 343 4554 4433333
Q ss_pred -CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcC
Q 017204 207 -APTREDRIGVCKGIFRND--NVADDDIVKLVDT 237 (375)
Q Consensus 207 -~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~g 237 (375)
.|+.+++.++++.++... .++.+.+..++..
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 799999999987766432 4555555544443
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=8.1e-14 Score=125.31 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=92.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC----------------ccccC--CCCChHHHHHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------ELESG--NAGEPAKLIRQRYREAADII 118 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s----------------~l~s~--~~Ge~~~~ir~~F~~A~~~~ 118 (375)
+.|..++|+||||||||+++++++++++......... .+... ........++.++..+....
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 3456899999999999999999999876432110000 00000 00112334455554430000
Q ss_pred HhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCC
Q 017204 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 198 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~ 198 (375)
....+.+|||||+|.+... ....|+.+++ ....++.+|++||++..+++++++
T Consensus 123 ~~~~~~vlviDe~~~l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~- 175 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS- 175 (250)
T ss_dssp SSSSSEEEEEETGGGSCHH-------------HHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred hcCCceEEEEECcccccHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH-
Confidence 1345899999999976321 1233444444 224568899999999999999987
Q ss_pred CcceEEEe-CCCHHHHHHhhhhhcCCC--CCCHHH---HHHHhcC
Q 017204 199 GRMEKFYW-APTREDRIGVCKGIFRND--NVADDD---IVKLVDT 237 (375)
Q Consensus 199 gRfd~~i~-~P~~~~R~~Il~~~l~~~--~v~~~~---la~lt~g 237 (375)
|+..+.. .|+.++..++++.++... .++.+. +++.+.|
T Consensus 176 -r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 176 -RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp -TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred -HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 5543333 689999999988777544 344443 4444444
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.4e-13 Score=134.52 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----------CCceEEeccCccc-c-----------------CCCCCh-HHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 106 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el-----------g~~~i~vs~s~l~-s-----------------~~~Ge~-~~~ 106 (375)
..|..++|+||||||||++|+++++++ +..++.+++.... + ...|.+ ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999998 8899998865432 1 011222 222
Q ss_pred HHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 017204 107 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 186 (375)
Q Consensus 107 ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN 186 (375)
+..++..+ ....+ ||||||+|.+..... + .. ++..++. . . .++.||+|||
T Consensus 123 ~~~l~~~l----~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~ 172 (384)
T 2qby_B 123 IDKIKNGT----RNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHH----SSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECS
T ss_pred HHHHHHHh----ccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEEC
Confidence 33333322 44444 999999998865431 1 11 0222223 1 1 6789999999
Q ss_pred CC---CCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC----CCCCCHHH---HHHHhcCCCh
Q 017204 187 DF---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADDD---IVKLVDTFPG 240 (375)
Q Consensus 187 ~~---~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~----~~~v~~~~---la~lt~gf~g 240 (375)
.+ +.+++++++ ||...+. +|+.++..+|++..+. ...++.+. +++.+.+.+|
T Consensus 173 ~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 173 DINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp STTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 98 789999887 5544444 7899999999887653 23455443 5566654444
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=1.8e-13 Score=130.12 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH---hCCceeeee
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMI 128 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~---~~~p~IL~i 128 (375)
+.|. +|||||||+|||++|+++++++ +..++.+++++.. +...++..+........ ...+.||+|
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 3455 9999999999999999999996 3456777765422 23455666555410000 334889999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-C
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 207 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~ 207 (375)
||+|.+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .
T Consensus 114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~ 165 (323)
T 1sxj_B 114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSK 165 (323)
T ss_dssp ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCC
T ss_pred ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecC
Confidence 999976432 1223334444 233567889999999999999987 5554333 7
Q ss_pred CCHHHHHHhhhhhcCCC--CCCHHH---HHHHhcCCChhhHH
Q 017204 208 PTREDRIGVCKGIFRND--NVADDD---IVKLVDTFPGQSID 244 (375)
Q Consensus 208 P~~~~R~~Il~~~l~~~--~v~~~~---la~lt~gf~gadl~ 244 (375)
|+.++..++++.++... .++.+. +++.+.|-....+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 89999999988776543 344544 55555554444443
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=2.2e-13 Score=132.38 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCccccC----------------CCCChHHH-HHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKL-IRQR 110 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s~----------------~~Ge~~~~-ir~~ 110 (375)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+... +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 567789999999999999999999998 788888887654321 12332222 2333
Q ss_pred HHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC-CCCceEEEEeCCC
Q 017204 111 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188 (375)
Q Consensus 111 F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~-~~~V~VI~TTN~~ 188 (375)
+.. +. ...|+||||||+|.+...+. . +..|..+++ ...... ..++.+|++||.+
T Consensus 122 ~~~----l~~~~~~~vlilDEi~~l~~~~~-------~----~~~l~~l~~---------~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VKR----LSRLRGIYIIVLDEIDFLPKRPG-------G----QDLLYRITR---------INQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHH----HTTSCSEEEEEEETTTHHHHSTT-------H----HHHHHHHHH---------GGGCC-----CEEEEECSCS
T ss_pred HHH----HhccCCeEEEEEccHhhhcccCC-------C----ChHHHhHhh---------chhhcCCCceEEEEEEECCC
Confidence 322 23 44589999999998865420 0 122222222 000011 4678999999998
Q ss_pred ---CCCChhhcCCCcceE-EEe--CCCHHHHHHhhhhhcCC----CCCCHHH---HHHHhc
Q 017204 189 ---STLYAPLIRDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADDD---IVKLVD 236 (375)
Q Consensus 189 ---~~Ld~ALlR~gRfd~-~i~--~P~~~~R~~Il~~~l~~----~~v~~~~---la~lt~ 236 (375)
+.+++++.+ ||.. .+. +|+.+++.+|++..+.. ..++.+. +++.+.
T Consensus 178 ~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 178 GFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp TTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 789999987 6643 333 68999999998876542 3344333 556666
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=4.2e-13 Score=127.40 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=96.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH--hCCceeeeecccccc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG 134 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~--~~~p~IL~iDEiD~i 134 (375)
+|||||||||||++|+++++++ +.+++.++++.... .. .++..+........ ...+.||+|||+|.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--ID----VVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TT----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hH----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 9999999999999999999996 34577777765432 11 12222222210001 256899999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHH
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 213 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R 213 (375)
... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.+++
T Consensus 115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAM 166 (319)
T ss_dssp CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHH
T ss_pred CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHH
Confidence 431 1223433443 334568899999999999999987 6664444 7899999
Q ss_pred HHhhhhhcCCCC--CCHHHHHHHhcCCCh
Q 017204 214 IGVCKGIFRNDN--VADDDIVKLVDTFPG 240 (375)
Q Consensus 214 ~~Il~~~l~~~~--v~~~~la~lt~gf~g 240 (375)
.+++..++...+ ++.+.+..+.....|
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999888876554 466666666644433
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.8e-13 Score=130.87 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=94.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC------CceEEeccCccccCCCCChHHHHHHHHHHHHHH------------HHhCCc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGKM 123 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg------~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~------------~~~~~p 123 (375)
+||+||||||||++|+++|++++ ..++.+++++.. ....+++.+...... .....+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCc
Confidence 99999999999999999999964 356777766532 123344433322110 012345
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceE
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~ 203 (375)
.||||||+|.+.... +..|+.+++ ....++.+|++||.+..+++++++ |+..
T Consensus 135 ~vliiDE~~~l~~~~-------------~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~~ 186 (353)
T 1sxj_D 135 KIIILDEADSMTADA-------------QSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCSK 186 (353)
T ss_dssp EEEEETTGGGSCHHH-------------HHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSEE
T ss_pred eEEEEECCCccCHHH-------------HHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCce
Confidence 799999999774321 234445555 223456788899999999999987 7765
Q ss_pred EEe-CCCHHHHHHhhhhhcCCCC--CCHHH---HHHHhcCCCh
Q 017204 204 FYW-APTREDRIGVCKGIFRNDN--VADDD---IVKLVDTFPG 240 (375)
Q Consensus 204 ~i~-~P~~~~R~~Il~~~l~~~~--v~~~~---la~lt~gf~g 240 (375)
+.. .|+.++...+++.++...+ ++.+. |++.+.|...
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 229 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR 229 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 444 7889999998887775543 55554 4444554433
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.42 E-value=4.5e-14 Score=136.44 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=82.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE----eccCcc---------------------ccCCCCChHHHH------H
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGEL---------------------ESGNAGEPAKLI------R 108 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~----vs~s~l---------------------~s~~~Ge~~~~i------r 108 (375)
.++||+||||||||++|+++++.++..... +++... .....|.+...+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 359999999999999999999998631110 011100 000122222211 1
Q ss_pred HHHHHHH-----HHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEE
Q 017204 109 QRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPII 182 (375)
Q Consensus 109 ~~F~~A~-----~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l~~~~~~~~~~~V~VI 182 (375)
..|..+. ..+....++||||||+|.+... .+..|+.+++... .+...|.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 2222210 1111234789999999976432 1234445444210 11111110 1112478999
Q ss_pred EEeCCCC-CCChhhcCCCcceEEEe--CC-CHHHHHHhhhhhc
Q 017204 183 VTGNDFS-TLYAPLIRDGRMEKFYW--AP-TREDRIGVCKGIF 221 (375)
Q Consensus 183 ~TTN~~~-~Ld~ALlR~gRfd~~i~--~P-~~~~R~~Il~~~l 221 (375)
+|||..+ .++++|++ ||+..+. .| +.+.+.+|++.++
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 9999754 89999998 8887666 45 6788889887653
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.40 E-value=1.6e-12 Score=117.87 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=96.6
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhC
Q 017204 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 45 ~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~ 121 (375)
..++.+...+ .+..++|+||||||||++|+++++++. ..++.++.+++.+... ..+. ...
T Consensus 41 ~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~ 103 (242)
T 3bos_A 41 GALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--------ALLE------GLE 103 (242)
T ss_dssp HHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--------GGGT------TGG
T ss_pred HHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHHH------hcc
Confidence 3444444332 567899999999999999999999875 6778888877664431 1111 124
Q ss_pred CceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CC---CCChhhcC
Q 017204 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FS---TLYAPLIR 197 (375)
Q Consensus 122 ~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-~~---~Ld~ALlR 197 (375)
.+.+|||||+|.+..... ....|..+++ .. .....+.+|+|||. +. .+++++.+
T Consensus 104 ~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp GSSEEEEETGGGGTTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred CCCEEEEeccccccCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 578999999998754321 1122333333 01 11122336666664 33 46688887
Q ss_pred CCcce--EEEe--CCCHHHHHHhhhhhcCCC--CCCHHHHHHHhcCCCh
Q 017204 198 DGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 240 (375)
Q Consensus 198 ~gRfd--~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~g 240 (375)
||. ..+. .|+.+++.++++.++... .++.+.+..+...+.|
T Consensus 162 --r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 162 --RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp --HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred --HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 663 5555 799999999998877543 4566666555554433
No 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.38 E-value=8.2e-13 Score=127.50 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=86.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc--cCCCCChH-HHHHHHHHHHHHHHHhCC---ceeeeeccccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPA-KLIRQRYREAADIIKKGK---MCCLMINDLDA 133 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~--s~~~Ge~~-~~ir~~F~~A~~~~~~~~---p~IL~iDEiD~ 133 (375)
.++||+||||||||++|+++|+.++.+++.+++..-. +...|... ..-...|. .... .+||||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~------~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFE------VKKGPVFSNFILADEVNR 120 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEE------EEECTTCSSEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceE------eccCcccccEEEEEcccc
Confidence 4799999999999999999999999998887763111 00000000 00000000 0111 37999999997
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhcCCCcceEEEe--
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW-- 206 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----~Ld~ALlR~gRfd~~i~-- 206 (375)
+... ....|++.++... +.+.|.. .....+++||+|+|..+ .++++|++ ||+..+.
T Consensus 121 ~~~~-------------~~~~Ll~~l~~~~-~~~~g~~-~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~ 183 (331)
T 2r44_A 121 SPAK-------------VQSALLECMQEKQ-VTIGDTT-YPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLT 183 (331)
T ss_dssp SCHH-------------HHHHHHHHHHHSE-EEETTEE-EECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECC
T ss_pred CCHH-------------HHHHHHHHHhcCc-eeeCCEE-EECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcC
Confidence 5322 2234444444211 1112211 11234678888888443 38999998 8886555
Q ss_pred CCCHHHHHHhhhhhcCC
Q 017204 207 APTREDRIGVCKGIFRN 223 (375)
Q Consensus 207 ~P~~~~R~~Il~~~l~~ 223 (375)
.|+.+++.+|++.+...
T Consensus 184 ~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 184 YLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhcccc
Confidence 79999999999887654
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.37 E-value=3.4e-12 Score=138.91 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC-----CCCChHHHH----HHHHHHHHHHHHhCCceeee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLM 127 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~-----~~Ge~~~~i----r~~F~~A~~~~~~~~p~IL~ 127 (375)
..+||+||||||||++|+++++.+ +.+|+.++++++... .+|.+...+ ...|..+ ++...++|||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence 589999999999999999999998 788999999877543 222211110 0112222 2455678999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC--------------------
Q 017204 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------------- 187 (375)
Q Consensus 128 iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~-------------------- 187 (375)
|||+|++. ..+...|+.++++.... ++.-...+..+++||+|||.
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998752 23456677777743321 11111223467899999997
Q ss_pred ------CCCCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcC
Q 017204 188 ------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222 (375)
Q Consensus 188 ------~~~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~ 222 (375)
...+.|+|+. ||+..+. +|+.++...|++.++.
T Consensus 731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 2356777775 8877666 6888999998776653
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=9.9e-12 Score=120.50 Aligned_cols=154 Identities=15% Similarity=0.256 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh------CCceEEeccCccccC----------------CCCChHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESG----------------NAGEPAKLIRQRYREA 114 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~F~~A 114 (375)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+.. .++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIA---ELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHH---HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH
Confidence 556789999999999999999999998 888888886532110 1222222 222222
Q ss_pred HHHHHh-CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CC
Q 017204 115 ADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST 190 (375)
Q Consensus 115 ~~~~~~-~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---~~ 190 (375)
.+.+.. ..|+||+|||+|.+....+ . ..+ ..|+..++ . ....++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~-----~~l-~~l~~~~~--------~----~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D-----DIL-YKLSRINS--------E----VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S-----THH-HHHHHHHH--------S----CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C-----HHH-HHHhhchh--------h----cCCCeEEEEEEECCCChHhh
Confidence 222343 4499999999998865431 1 112 22333333 0 134578999999987 46
Q ss_pred CChhhcCCCcce-EEEe--CCCHHHHHHhhhhhcC----CCCCCHHH---HHHHhc
Q 017204 191 LYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR----NDNVADDD---IVKLVD 236 (375)
Q Consensus 191 Ld~ALlR~gRfd-~~i~--~P~~~~R~~Il~~~l~----~~~v~~~~---la~lt~ 236 (375)
+++.+.+ ||. +.+. +++.++..+|++..+. ...++.+. +++.+.
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 8888877 442 2333 7899999999877543 23455443 455555
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=3.3e-12 Score=124.28 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=102.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 111 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F 111 (375)
-+.|..+||+||||+|||++|+++|+.+... ++.+.+.+ +...-+...+|.+.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 3678899999999999999999999998653 22232210 00112345677777
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
+.+...-..+...|++|||+|.+... ....|+..++ ++..++++|++||.++.|
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPERL 151 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGGS
T ss_pred HHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhC
Confidence 76511101345789999999987421 1234555555 445678899999999999
Q ss_pred ChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCCCCHHH---HHHHhcCCChhhH
Q 017204 192 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPGQSI 243 (375)
Q Consensus 192 d~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~v~~~~---la~lt~gf~gadl 243 (375)
++++++ |+..+.. .|+.++..++++... .++.+. +++++.|-.+..+
T Consensus 152 ~~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 152 LATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp CHHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHH
Confidence 999987 6665444 789999999887765 455544 5555555444333
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=1.8e-12 Score=123.45 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=90.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccCCCCChHHHHHHHHHHHHHH--HHhCCceeeeeccccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 133 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~--~~~~~p~IL~iDEiD~ 133 (375)
.+||+||||||||++|+++++++.. .++.+++++.. ....++..+...... .....+.||+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 4999999999999999999999642 36666655432 112223333222100 0125688999999997
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHH
Q 017204 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 134 i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~ 212 (375)
+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 6431 1234444544 223567899999999999999987 6664444 788899
Q ss_pred HHHhhhhhcCCCC--CCHHHHH
Q 017204 213 RIGVCKGIFRNDN--VADDDIV 232 (375)
Q Consensus 213 R~~Il~~~l~~~~--v~~~~la 232 (375)
..++++.++...+ ++.+.+.
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~ 195 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQ 195 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHH
Confidence 9998887776554 4554433
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.36 E-value=1.5e-12 Score=126.54 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=96.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEeccCccccCCCCChHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~F~ 112 (375)
+.|..+||+||||||||++|+++|+.++.. ++.++++. . .....++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 456689999999999999999999998652 22222221 0 11223555665
Q ss_pred HHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 017204 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld 192 (375)
.+......+.+.||+|||+|.+... ....|+..++ ....++.+|++||.+..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 5410001345789999999976321 1234445555 3345688999999999999
Q ss_pred hhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC--CCHHH---HHHHhcCCCh
Q 017204 193 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDD---IVKLVDTFPG 240 (375)
Q Consensus 193 ~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~--v~~~~---la~lt~gf~g 240 (375)
+++++ |+..+-. .|+.++..++++.++...+ ++.+. +++.+.|...
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r 215 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHH
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHH
Confidence 99986 5544333 7899999999887775443 44443 4455544333
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.35 E-value=1.3e-13 Score=129.13 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCCCCChHHHHHHHHH-------HH----HHHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYR-------EA----ADIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~~Ge~~~~ir~~F~-------~A----~~~~~~~~p 123 (375)
.+..+||+||||||||++|+++++.+. .+|+.++++.+... .....+|+ .+ ...+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~------~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~ 101 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH------HHHHHHHCCC---------CCCCHHHHTTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh------HHHHHhcCCcccccccccccccchhhhcCC
Confidence 346799999999999999999999875 67999998876311 01111221 11 011223456
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhc
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 196 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ALl 196 (375)
++|||||+|.+... .+..|+.+++........+. .....++.||+|||.. ..++++|.
T Consensus 102 ~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~ 166 (265)
T 2bjv_A 102 GTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp SEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred cEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHH
Confidence 89999999977432 23345555552211111111 1123567899999984 35778887
Q ss_pred CCCcceE-EEeCCCHHHHH
Q 017204 197 RDGRMEK-FYWAPTREDRI 214 (375)
Q Consensus 197 R~gRfd~-~i~~P~~~~R~ 214 (375)
. ||.. .+.+|...+|.
T Consensus 167 ~--Rl~~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 167 D--ALAFDVVQLPPLRERE 183 (265)
T ss_dssp H--HHCSEEEECCCGGGCH
T ss_pred H--hhcCcEEeCCChhhhh
Confidence 6 7853 45577766553
No 73
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.34 E-value=1.6e-11 Score=119.46 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=97.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.++..++|+||||||||+|++++|++++.++...+++.+.. ...+...+. ......|+||||++.+..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~------~~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILT------SLERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHH------HCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHH------HccCCCEEEEcchhhcCH
Confidence 45677999999999999999999999999888777765431 223333332 124578999999987653
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCc-cccC-CCc---cccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe--CCC
Q 017204 137 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQL-PGM---YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 209 (375)
Q Consensus 137 ~r~~~~~~~~~~~~v~~~L~~lld~~~-~v~l-~~~---~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~--~P~ 209 (375)
. +...|...+.... .+-+ .+. ........+.+|++||++..|++++++ ||...+. +|+
T Consensus 117 ~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 A-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 1222222222110 0000 000 000123457788899999999999997 7765554 799
Q ss_pred HHHHHHhhhhhcCCC--CCCHHHHHHHhcCCC
Q 017204 210 REDRIGVCKGIFRND--NVADDDIVKLVDTFP 239 (375)
Q Consensus 210 ~~~R~~Il~~~l~~~--~v~~~~la~lt~gf~ 239 (375)
.+++.+|++...... .++.+.+..++....
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~ 213 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSR 213 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcC
Confidence 999999988765433 455555544444433
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1.1e-11 Score=120.92 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=94.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCceEEeccCccccC----------------CCCChHHHHHHHHHHHHHHHH-
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK- 119 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~F~~A~~~~~- 119 (375)
.++|+||||||||++++++++++ +..++.++++...+. ..|.+... ++......+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHhh
Confidence 89999999999999999999998 677888886543320 01222222 2222222223
Q ss_pred hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CCCChhhc
Q 017204 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI 196 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~---~~Ld~ALl 196 (375)
...|.||||||+|.+ . ......|..++. .. ......++.||++||.+ +.+++.+.
T Consensus 123 ~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~--------~~-~~~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL----A---------PDILSTFIRLGQ--------EA-DKLGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGS----C---------HHHHHHHHHHTT--------CH-HHHSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECcccc----c---------hHHHHHHHHHHH--------hC-CCCCcCCEEEEEEECCchHHHHhCHHhh
Confidence 466899999999987 1 122334444443 11 00112478999999998 77888887
Q ss_pred CCCcceE-EEe--CCCHHHHHHhhhhhcCC----CCCCHHH---HHHHhc
Q 017204 197 RDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADDD---IVKLVD 236 (375)
Q Consensus 197 R~gRfd~-~i~--~P~~~~R~~Il~~~l~~----~~v~~~~---la~lt~ 236 (375)
+ ||.. .+. +++.++..++++..+.. ..++.+. +++.+.
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 6 5553 333 67888888888766542 3566555 555563
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.33 E-value=1.7e-12 Score=111.18 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
.+..|||+||||||||++|+++++.. +.+|+ ++++.+.+. ......|..| ..++|||||||.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 44569999999999999999999987 67888 998877654 1233455554 4579999999977
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 135 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
... .+..|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 432 2233444443 233457899999974
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=5.2e-12 Score=122.42 Aligned_cols=135 Identities=17% Similarity=0.342 Sum_probs=83.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC-----------------------------ceEEeccCccccCCCCC-hHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAGELESGNAGE-PAKL 106 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~-----------------------------~~i~vs~s~l~s~~~Ge-~~~~ 106 (375)
+.|. ++|+||||||||++++++|+++.. .++.+..+. .+. ....
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 108 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIV 108 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHH
Confidence 4455 999999999999999999997521 112222211 111 1113
Q ss_pred HHHHHHHHHHHHH----------hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 017204 107 IRQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176 (375)
Q Consensus 107 ir~~F~~A~~~~~----------~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~ 176 (375)
+++.+..+..... ...|.||+|||+|.+... ....|+..+. +..
T Consensus 109 ~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~-------------~~~~L~~~le-------------~~~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-------------AQAALRRTME-------------KYS 162 (354)
T ss_dssp HHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-------------HHHHHHHHHH-------------HST
T ss_pred HHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-------------HHHHHHHHHH-------------hhc
Confidence 4555544311000 236789999999874211 1233444444 223
Q ss_pred CCceEEEEeCCCCCCChhhcCCCcceEEEe-CCCHHHHHHhhhhhcCCCC
Q 017204 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN 225 (375)
Q Consensus 177 ~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~~~~ 225 (375)
.++.+|++||+++.+.+++++ |+..+-. .|+.++..++++.++...+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 457899999999999999986 6644433 7899999999888775544
No 77
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=7.2e-12 Score=148.69 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=92.7
Q ss_pred CCcEEEEEcCCCchHHHHHHH-HHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH-----------hCCcee
Q 017204 58 VPLILGIWGGKGQGKSFQCEL-VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCC 125 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~a-IA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~-----------~~~p~I 125 (375)
..+++||+||||||||++|+. +++..+..++.++.+... +...+...++...+..+ .++++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 457899999999999999954 554446677777765443 23344444443210000 234579
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCC-----CCChhh
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS-----TLYAPL 195 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~-----~~~~V~VI~TTN~~~-----~Ld~AL 195 (375)
|||||||.-...+. ++ +...++|.++++. .|.+... ...++.+|+|||.+. .|+++|
T Consensus 1340 lFiDEinmp~~d~y-g~------q~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-GS------QNVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEETTTCSCCCSS-SC------CHHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEeccccccccccc-Cc------hhHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 99999997555443 22 2344555555552 2333221 124689999999994 899999
Q ss_pred cCCCcceEEEe-CCCHHHHHHhhhhhcC
Q 017204 196 IRDGRMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 196 lR~gRfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
+| ||..+.. .|+.+++..|+..++.
T Consensus 1407 lR--rf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1407 TR--HAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HT--TEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hh--eeeEEEeCCCCHHHHHHHHHHHHH
Confidence 99 7744444 7999999999776653
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.28 E-value=3.1e-12 Score=131.48 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=79.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC--ceEEecc-----CccccCCCCChHHHHHHHHHHHHHHHHhC---Cceeeeec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-----GELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMIN 129 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~-----s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~---~p~IL~iD 129 (375)
..+||+||||||||++|+++|+.++. +|..+.. +++...+.+..... ...|..+ ..+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeHH
Confidence 47999999999999999999999854 3333332 23333232221111 1222222 222 46799999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhcCCCcceEEEe
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 206 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~---Ld~ALlR~gRfd~~i~ 206 (375)
||+.+.. .++..|+..++... +...|.. ...+..++|+|||.... +.+++++ ||...+.
T Consensus 117 EI~r~~~-------------~~q~~LL~~lee~~-v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAGP-------------AILNTLLTAINERQ-FRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCCH-------------HHHHHHHHHHHSSE-EECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhcH-------------HHHHHHHHHHHHHh-ccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 9975321 23345666665221 2222221 22233367888886432 4458887 8877777
Q ss_pred --CCCH-HHHHHhhhhhc
Q 017204 207 --APTR-EDRIGVCKGIF 221 (375)
Q Consensus 207 --~P~~-~~R~~Il~~~l 221 (375)
.|+. +++.+|++.+.
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 5665 77889988765
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=3.3e-13 Score=141.55 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=85.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe----ccCccccCCC-----CChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNA-----GEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v----s~s~l~s~~~-----Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.+||+||||||||++|+++|+.++..++.. +++.+..... |+.. .-...+. ....+|||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~G~l~-------~A~~gil~IDEi 400 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY-LEAGALV-------LADGGIAVIDEI 400 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS-EEECHHH-------HHSSSEECCTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccc-ccCCeeE-------ecCCCcEEeehh
Confidence 799999999999999999999987655442 2222221111 1100 0001122 224589999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccc-cCCCccccCCCCCceEEEEeCCCC-------------CCChhhcC
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV-QLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 197 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v-~l~~~~~~~~~~~V~VI~TTN~~~-------------~Ld~ALlR 197 (375)
|++... .+..|++.++..+.. ...|. ......++.||+|||... .|++||++
T Consensus 401 d~l~~~-------------~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 401 DKMRDE-------------DRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp TCCCSH-------------HHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hhCCHh-------------HhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 987432 234556666632211 00011 112346789999999987 89999998
Q ss_pred CCcceEEEe---CCCHHHHHHhhhhhcCC
Q 017204 198 DGRMEKFYW---APTREDRIGVCKGIFRN 223 (375)
Q Consensus 198 ~gRfd~~i~---~P~~~~R~~Il~~~l~~ 223 (375)
|||..+. .|+.+ ...|.+.++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9985444 57777 77777666543
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=5.6e-11 Score=115.36 Aligned_cols=139 Identities=14% Similarity=0.227 Sum_probs=89.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC-----ceEEeccCccccCCCCChHHHHHHHHHHHHHHHH--hCCceeeeec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMIN 129 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~--~~~p~IL~iD 129 (375)
+.|. +|||||||||||++|+++|+.+.. .++.++.+... | ...++.......+... ...+.|++||
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiD 117 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILD 117 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence 3444 999999999999999999999642 35556655321 1 3445554444311000 1247899999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEe-CC
Q 017204 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 208 (375)
Q Consensus 130 EiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~-~P 208 (375)
|+|.+... .+..|+..++ .....+.+|++||.+..+.+++++ |+..+.. .+
T Consensus 118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l 169 (340)
T 1sxj_C 118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPL 169 (340)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hceeEeccCC
Confidence 99977421 1233444444 223456788899999999999987 6765444 67
Q ss_pred CHHHHHHhhhhhcCCC--CCCHHH
Q 017204 209 TREDRIGVCKGIFRND--NVADDD 230 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~--~v~~~~ 230 (375)
+.++..+++..++... .++.+.
T Consensus 170 ~~~~~~~~l~~~~~~~~~~i~~~~ 193 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLKLSPNA 193 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCCBCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7888888877776444 344443
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=2.7e-12 Score=113.14 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=65.7
Q ss_pred cccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccCcc
Q 017204 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGEL 95 (375)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s~l 95 (375)
++..+|+++... .+ ..+.+...+++|.....+..+.+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 4 ~~~~~f~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 4 YWNANLDTYHPK---NV--SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CTTCCSSSCCCC---SH--HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhhCccccccCC---CH--HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 345556664432 12 244566777788777777778899999999999999999999987 666666666554
Q ss_pred ccCCCCChHHHHHHHHHHHH--H-HHHhCCceeeeecccccc
Q 017204 96 ESGNAGEPAKLIRQRYREAA--D-IIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 96 ~s~~~Ge~~~~ir~~F~~A~--~-~~~~~~p~IL~iDEiD~i 134 (375)
.+. +...+.... . +..-..|.+|+|||+++.
T Consensus 79 ~~~--------~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFR--------LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHH--------HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHH--------HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 421 112221100 0 112346889999999754
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.24 E-value=1.1e-12 Score=112.22 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
.+..|||+||||||||++|++++++.+ +|+.++++.+.+.+ ....|..| ..++|||||+|.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN 90 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH
Confidence 445699999999999999999999988 88889988765333 34555544 4689999999977432
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 138 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 138 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
.+..|+.+++ . ....++.+|+|||.+
T Consensus 91 -------------~q~~Ll~~l~--------~----~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 -------------IQTGITFIIG--------K----AERCRVRVIASCSYA 116 (143)
T ss_dssp -------------HHHHHHHHHH--------H----HTTTTCEEEEEEEEC
T ss_pred -------------HHHHHHHHHH--------h----CCCCCEEEEEecCCC
Confidence 1233444444 1 113557899999965
No 83
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.23 E-value=1.2e-11 Score=119.04 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=80.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC-------------CCCChHHHHHHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKK 120 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~-------------~~Ge~~~~ir~~F~~A~~~~~~ 120 (375)
+.+..+||+||||||||++|++|++.. +.+|+.++++.+... +.|... .....|..|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------ 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------ 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence 446679999999999999999999975 568999988765321 111111 112234433
Q ss_pred CCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCCh
Q 017204 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYA 193 (375)
Q Consensus 121 ~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~-------~~Ld~ 193 (375)
..++|||||||.+... .+..|+.+++...-..+.+. .....++.||+|||.. ..+++
T Consensus 96 -~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~ 159 (304)
T 1ojl_A 96 -DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ 159 (304)
T ss_dssp -TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred -CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence 3579999999977432 23445566663221111111 1123568899999986 23555
Q ss_pred hhcCCCcceEE-EeCCCHHHHH
Q 017204 194 PLIRDGRMEKF-YWAPTREDRI 214 (375)
Q Consensus 194 ALlR~gRfd~~-i~~P~~~~R~ 214 (375)
+|.. ||... +.+|...+|.
T Consensus 160 ~L~~--Rl~~~~i~lPpL~eR~ 179 (304)
T 1ojl_A 160 DLYY--RLNVVAIEMPSLRQRR 179 (304)
T ss_dssp HHHH--HHSSEEEECCCSGGGG
T ss_pred HHHh--hcCeeEEeccCHHHhH
Confidence 6654 66433 4577766653
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=3.8e-11 Score=115.93 Aligned_cols=149 Identities=7% Similarity=-0.039 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh------CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el------g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
+..+|||||||+|||++|+++|+.+ ...++.++++. + .-+...+|++.+.+...-..+...|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4589999999999999999999974 34566666541 1 12345678888877100002335799999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCCCHHH
Q 017204 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 212 (375)
Q Consensus 133 ~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~~~ 212 (375)
.+... ..+.|+..++ ++.+++++|.+||.++.|.|+++. | -..+..|+.++
T Consensus 93 ~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKE 143 (305)
T ss_dssp GBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHH
T ss_pred HhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHH
Confidence 87421 1234555555 445677888889999999999987 5 33344788888
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHhcCCChhhHHH
Q 017204 213 RIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 213 R~~Il~~~l~~~~v~~~~la~lt~gf~gadl~~ 245 (375)
..++++..+ +++.+.+ .+..|-.+..+.+
T Consensus 144 i~~~L~~~~---~i~~~~~-~~~~g~~~~al~~ 172 (305)
T 2gno_A 144 FRDLVKEKI---GDLWEEL-PLLERDFKTALEA 172 (305)
T ss_dssp HHHHHHHHH---TTHHHHC-GGGGTCHHHHHHH
T ss_pred HHHHHHHHh---CCCHHHH-HHHCCCHHHHHHH
Confidence 888877666 3444433 3445544444433
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.21 E-value=7.7e-12 Score=143.16 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=84.5
Q ss_pred CCcE--EEEEcCCCchHHHHHHHHHHHhCC---ceEEeccCccc------------cCCCCC----hHHHHHHHHHHHHH
Q 017204 58 VPLI--LGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD 116 (375)
Q Consensus 58 ~p~g--lLL~GPPGtGKT~LA~aIA~elg~---~~i~vs~s~l~------------s~~~Ge----~~~~ir~~F~~A~~ 116 (375)
+|+| +|||||||||||+||++++.+... +-+.|+..+.. ++|+++ +|+.++.+|..|
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence 4555 999999999999999999998744 44444444433 788888 899999999988
Q ss_pred HHHhCCceeeeecccccccCCCC-----CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 017204 117 IIKKGKMCCLMINDLDAGAGRMG-----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 189 (375)
Q Consensus 117 ~~~~~~p~IL~iDEiD~i~~~r~-----~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~ 189 (375)
++..||+||+|++|+++++++ +..+..+..+.++++|.++- +. ....+|+|| +||+..
T Consensus 1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~---------~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA---------GN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH---------HH---HHHTTCEEE-EEECEE
T ss_pred --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHH---------hh---hccCCeEEE-Eecccc
Confidence 999999999999999998842 11122455566776664332 22 455677777 888754
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.07 E-value=1.2e-10 Score=113.31 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc--eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~--~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
.|+.+...++|+||||||||+||.++|.+.|.. |+.....+..+.+..+.+..++.+++.. .+.. +||||++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI 191 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSL 191 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEecc
Confidence 466667778999999999999999999876544 5555334444445455555555555544 4444 9999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 017204 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 195 (375)
Q Consensus 132 D~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~AL 195 (375)
+.+.....+........+.+.++|..+.. . ....++.+|+++| +...|+++
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 99865543211111123334444433322 1 1223567888888 66677775
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=5.7e-10 Score=99.71 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=60.0
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHhhhhCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~-~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
..++.++|+++.... +. ...+...++.++... ....|.+++|+||||||||+||+++++++ +..++.++.+
T Consensus 17 ~~~~~~~f~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 17 REILRASLSDVDLND---DG--RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GGGGCCCTTSSCCSS---HH--HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHcCCHhhccCCC---hh--HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 344556667754432 11 122233444554322 22245899999999999999999999987 6677777776
Q ss_pred ccccCCCCCh-HHHHHHHHHHHHHHHHhCCceeeeeccccccc
Q 017204 94 ELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 94 ~l~s~~~Ge~-~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
++........ ...+...+... . .+.+|+|||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~----~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYI----K--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHH----H--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh----c--CCCEEEEcCCCCCc
Confidence 5532110000 00011122221 2 24699999997653
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=1.2e-09 Score=94.34 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i 134 (375)
....++|+||+|+|||+|+++++..+ |...+.+++.++... + ...+|.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence 56789999999999999999999987 777888888777643 1 1235889999999864
Q ss_pred c
Q 017204 135 A 135 (375)
Q Consensus 135 ~ 135 (375)
.
T Consensus 96 ~ 96 (149)
T 2kjq_A 96 G 96 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.95 E-value=3.2e-10 Score=109.42 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=50.7
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CceEEeccCccccCCCCCh-HHHHHHHHHHHHHHH
Q 017204 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEP-AKLIRQRYREAADII 118 (375)
Q Consensus 44 ~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg----~~~i~vs~s~l~s~~~Ge~-~~~ir~~F~~A~~~~ 118 (375)
...++.|+....-..+.+++||||||||||+||.++|+++. ..++.++.+++.....+.. ...+...+..
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~----- 211 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA----- 211 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH-----
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH-----
Confidence 33555665432222468999999999999999999998764 6777777765543211100 0001111221
Q ss_pred HhCCceeeeecccccc
Q 017204 119 KKGKMCCLMINDLDAG 134 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i 134 (375)
-..+.+|||||++..
T Consensus 212 -~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 212 -VKNVPVLILDDIGAE 226 (308)
T ss_dssp -HHTSSEEEEETCCC-
T ss_pred -hcCCCEEEEcCCCCC
Confidence 123569999999654
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.95 E-value=3.9e-09 Score=103.65 Aligned_cols=157 Identities=10% Similarity=0.131 Sum_probs=89.2
Q ss_pred CCcEEEE--EcCCCchHHHHHHHHHHHh---------CCceEEeccCccccC----------------CCCChHHHHHHH
Q 017204 58 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 110 (375)
Q Consensus 58 ~p~glLL--~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~ 110 (375)
.+..++| +||||+|||+|++++++++ +..++.+++....+. ..|.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 455666765322100 0121111 12
Q ss_pred HHHHHHHHH-hCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC--CCceEEEEeCC
Q 017204 111 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND 187 (375)
Q Consensus 111 F~~A~~~~~-~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~--~~V~VI~TTN~ 187 (375)
+....+.+. ...|.||+|||+|.+...+. . . ...+ ..|+.++. . . .... .++.||+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~-~----~~~l-~~l~~~~~-----~---~--~~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPR-I-A----AEDL-YTLLRVHE-----E---I--PSRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTT-S-C----HHHH-HHHHTHHH-----H---S--CCTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccC-c-c----hHHH-HHHHHHHH-----h---c--ccCCCCceEEEEEEecc
Confidence 222222222 46799999999998865321 0 1 1112 22222332 0 0 0112 57889999987
Q ss_pred CC---CCC---hhhcCCCcceEEEe--CCCHHHHHHhhhhhcC----CCCCCHHH---HHHHhc
Q 017204 188 FS---TLY---APLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADDD---IVKLVD 236 (375)
Q Consensus 188 ~~---~Ld---~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~----~~~v~~~~---la~lt~ 236 (375)
++ .++ +.+.++ +...+. .++.++..++++..+. ...++.+. +.+.+.
T Consensus 189 ~~~~~~l~~~~~~~~~~--~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 189 VRALSYMREKIPQVESQ--IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp THHHHHHHHHCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred ccHHHHHhhhcchhhhh--cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 75 334 555553 333344 6788889888865432 22455544 566666
No 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.91 E-value=3.1e-09 Score=105.53 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeeccccc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~ 133 (375)
.+++.+..++|+||||+|||+|+++++..++..++.+..+. .. . .|... ...+..++|+||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHH
Confidence 37788889999999999999999999999876655433221 10 0 11111 233456789999999
Q ss_pred ccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhcCCCcceEEEeCCCHHH
Q 017204 134 GAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 212 (375)
Q Consensus 134 i~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ALlR~gRfd~~i~~P~~~~ 212 (375)
+.. .++-....... ....+.+.++ | .+.|+++||+++.+ ++++||||++..++.+....
T Consensus 228 ~~~~~r~l~~~~~~~---~~~~l~~~ld--------G--------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~~ 287 (377)
T 1svm_A 228 TGGESRDLPSGQGIN---NLDNLRDYLD--------G--------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKTL 287 (377)
T ss_dssp STTTTTTCCCCSHHH---HHHTTHHHHH--------C--------SSCEEECCSSSCCE-EECCCCEEEEECSCCCCHHH
T ss_pred HHHHHhhccccCcch---HHHHHHHHhc--------C--------CCeEeeccCchhhH-HHhhcCcccChhHHhhcHHH
Confidence 875 22211111110 1112222333 2 36789999999999 79999999999888554433
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.81 E-value=1.5e-08 Score=92.58 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=69.7
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 017204 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123 (375)
Q Consensus 44 ~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p 123 (375)
....+.+++ +++...++|||||||||||++|.++|+.+.-..+....+. +.+ .+. .....
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~------~l~~~ 104 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLE------PLTDT 104 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGG------GGTTC
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhc------ccCCC
Confidence 445566664 3444568999999999999999999999864432211110 000 011 11224
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCC---CCCChhhcCCC
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF---STLYAPLIRDG 199 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-~~~~~V~VI~TTN~~---~~Ld~ALlR~g 199 (375)
.||+|||+|.- ..+.+...+.+++|.- .+.++-.+.. ......++|+|||.. +...+.|..
T Consensus 105 kIiiLDEad~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S-- 169 (212)
T 1tue_A 105 KVAMLDDATTT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES-- 169 (212)
T ss_dssp SSEEEEEECHH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--
T ss_pred CEEEEECCCch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--
Confidence 59999999831 1233445666676621 1112211111 112345899999973 333334443
Q ss_pred cceEEEe
Q 017204 200 RMEKFYW 206 (375)
Q Consensus 200 Rfd~~i~ 206 (375)
|+..+-+
T Consensus 170 Ri~~f~F 176 (212)
T 1tue_A 170 RITVFEF 176 (212)
T ss_dssp SCEEEEC
T ss_pred hEEEEEc
Confidence 6654444
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.72 E-value=3e-08 Score=89.95 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH--------hC-CceEEeccCccccCCC-------------CC--hHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA-------------GE--PAKLIRQRYRE 113 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e--------lg-~~~i~vs~s~l~s~~~-------------Ge--~~~~ir~~F~~ 113 (375)
.+...|++|+||+|||++|.+.+.. .| .+++..+...|.-.+. ++ ....+...+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 4568899999999999999886444 34 4555555444432221 11 11222222111
Q ss_pred HHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 017204 114 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 193 (375)
Q Consensus 114 A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~Ld~ 193 (375)
..+..+||+|||++.+.+.+....+ ..+ .|.++.. ....++-||.+|+.++.|+.
T Consensus 84 -----~~~~~~vliIDEAq~l~~~~~~~~e---~~r----ll~~l~~-------------~r~~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 84 -----PENIGSIVIVDEAQDVWPARSAGSK---IPE----NVQWLNT-------------HRHQGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp -----GGGTTCEEEETTGGGTSBCCCTTCC---CCH----HHHGGGG-------------TTTTTCEEEEEESCGGGBCH
T ss_pred -----cccCceEEEEEChhhhccCccccch---hHH----HHHHHHh-------------cCcCCeEEEEECCCHHHHhH
Confidence 2566899999999999765531111 112 2222211 33445678999999999999
Q ss_pred hhcCCCcceEEEe
Q 017204 194 PLIRDGRMEKFYW 206 (375)
Q Consensus 194 ALlR~gRfd~~i~ 206 (375)
+++. |++..+.
T Consensus 139 ~lr~--ri~~~~~ 149 (199)
T 2r2a_A 139 NLRT--LVRKHYH 149 (199)
T ss_dssp HHHT--TEEEEEE
T ss_pred HHHH--HhheEEE
Confidence 9775 9998888
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.71 E-value=4.4e-09 Score=110.20 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..++|+||||||||++|++||..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47999999999999999999998754
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.65 E-value=2.5e-08 Score=115.77 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc----cCC------------CCChHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGN------------AGEPAKLIRQRYREA 114 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~----s~~------------~Ge~~~~ir~~F~~A 114 (375)
.|++++++++|+||||||||+||.+++.+. |.....++..+.. .+. ....++.++.++..+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 368899999999999999999999998875 4444555544321 111 224566666666665
Q ss_pred HHHHHhCCceeeeecccccccCCC---C--CCcccchhhHHHHHHHHHhhc
Q 017204 115 ADIIKKGKMCCLMINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD 160 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEiD~i~~~r---~--~~~~~~~~~~~v~~~L~~lld 160 (375)
+..+|++|||||++.+.+.. + +.+......+.+.++|.++..
T Consensus 1502 ----r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ----HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ----hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 88999999999999998742 1 111222245566666665544
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=2.7e-07 Score=110.08 Aligned_cols=141 Identities=10% Similarity=0.087 Sum_probs=93.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~ 137 (375)
..+|+++.||||||||.+++++|+.+|.+++.+++++-.+ ...+..+|..+ ....+.++|||++.+...
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 3467899999999999999999999999999999987653 34556677655 223589999999875432
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhcCCCcceEEEe-CCCHHH
Q 017204 138 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTRED 212 (375)
Q Consensus 138 r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~-~P~~~~ 212 (375)
. -++..+.+...+--+.+....+.+.|.. ....+...|++|.| ....|+++|.+ ||-.+.. .|+.+.
T Consensus 713 v-----Ls~l~~~l~~i~~al~~~~~~i~~~g~~-i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~ 784 (2695)
T 4akg_A 713 V-----LSAVSANIQQIQNGLQVGKSHITLLEEE-TPLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGT 784 (2695)
T ss_dssp H-----HHHHHHHHHHHHHHHHHTCSEEECSSSE-EECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHH
T ss_pred H-----HHHHHHHHHHHHHHHHcCCcEEeeCCcE-EecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHH
Confidence 1 1222222222222223333333333321 12245667899999 66789999988 5544333 799998
Q ss_pred HHHhh
Q 017204 213 RIGVC 217 (375)
Q Consensus 213 R~~Il 217 (375)
..+|+
T Consensus 785 i~ei~ 789 (2695)
T 4akg_A 785 IAEMI 789 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88884
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.47 E-value=1.1e-06 Score=83.76 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=85.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc------------c---CCCCC---------------------h
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 103 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~------------s---~~~Ge---------------------~ 103 (375)
..++|+||+|+|||+|++.++++.+ .+.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 4444432210 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 017204 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183 (375)
Q Consensus 104 ~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~ 183 (375)
...+..++....+.+....|.+|+|||++.+..... .. ...+...|..+.+ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~-----~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RG-----GKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TT-----THHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cc-----hhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 012233333332233333499999999998764110 00 0112223333333 0 13567777
Q ss_pred EeCCCC---------CCChhhcCCCcceEEEe--CCCHHHHHHhhhhhcCCC--CCCHHH---HHHHhcCCChh
Q 017204 184 TGNDFS---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDD---IVKLVDTFPGQ 241 (375)
Q Consensus 184 TTN~~~---------~Ld~ALlR~gRfd~~i~--~P~~~~R~~Il~~~l~~~--~v~~~~---la~lt~gf~ga 241 (375)
|+.... ....++. ||....+. +.+.++-.+++...+... .++.+. +...+.|++..
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 765432 1122232 45544455 568888888887765433 344443 56667777653
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.45 E-value=1.1e-06 Score=83.25 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHhhhhCCCC-CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 43 VVHITKNFMSLPNI-KVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 43 ~~~~~k~~l~~~~~-~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
....++++++ +. +...+|+||||||||||++|++||+.++.
T Consensus 89 ~~~~l~~~l~--~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 89 AASVFLGWAT--KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHT--TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHh--CCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4445666664 33 33468999999999999999999998655
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=8.9e-06 Score=77.42 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
..++|+||+|+|||+|++.++++++..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999877777766543
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.44 E-value=1e-07 Score=114.51 Aligned_cols=141 Identities=11% Similarity=0.179 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CCceEEeccCccccCCCCChHHHHHHHHHHHHHHHH------------hCCcee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCC 125 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~------------~~~p~I 125 (375)
.+.+||+||||||||+++......+ +..++.++.+.-. +...+.+.++...+..+ .++..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3459999999999998876554444 5556666665433 23444455542100000 133469
Q ss_pred eeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCC-----CCCChhh
Q 017204 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPL 195 (375)
Q Consensus 126 L~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~-----~~~~~V~VI~TTN~~-----~~Ld~AL 195 (375)
+|||||+.-..... ++ |...++|.+++|+- |.+.. ....++.+|+|.|.+ ..|+++|
T Consensus 1378 lFiDDiNmp~~D~y-Gt------Q~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY-GT------QRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEETTTTCCCCCTT-SC------CHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccCCCCcccc-cc------ccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 99999985433322 22 34556677777632 22221 123667899999987 5699999
Q ss_pred cCCCcceEEEe-CCCHHHHHHhhhhh
Q 017204 196 IRDGRMEKFYW-APTREDRIGVCKGI 220 (375)
Q Consensus 196 lR~gRfd~~i~-~P~~~~R~~Il~~~ 220 (375)
+| ||-.+.. .|+.+....|+..+
T Consensus 1445 ~r--~F~vi~i~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1445 LR--HAPILLVDFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp HT--TCCEEECCCCCHHHHHHHHHHH
T ss_pred Hh--hceEEEeCCCCHHHHHHHHHHH
Confidence 99 7777555 89999999996544
No 101
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.16 E-value=1.1e-06 Score=87.23 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccC-------------CCCChHHHHHHHHHHHHHHHHhCC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKKGK 122 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~-------------~~Ge~~~~ir~~F~~A~~~~~~~~ 122 (375)
...+||+|++|||||++|+++..... .+|+.++++.+-.. +.|.... -...|+.| .
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~ 231 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------D 231 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------T
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------C
Confidence 34579999999999999999998864 57999998865321 1121110 11233333 4
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 188 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~ 188 (375)
..+||||||+.+.. .++..|+.+++......+.+. ......+-||+|||..
T Consensus 232 ~gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 232 GGTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp TSEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred CcEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 57999999987643 233455555552211111111 1122467899999973
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.14 E-value=1.4e-05 Score=71.23 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
.|+++...++|+||||+|||+++..+|...+...+.++...
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 37888889999999999999999999986666777766543
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.09 E-value=5.7e-06 Score=96.32 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 119 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~s~~----~G--------e~~~~ir~~F~~A~~~~~ 119 (375)
|+.+...++|+|+||+|||+||..+|..+. .+++.++..+..+.+ .| .++..+..++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 788999999999999999999999998863 458888877654433 23 123346677777766666
Q ss_pred hCCceeeeecccccccC
Q 017204 120 KGKMCCLMINDLDAGAG 136 (375)
Q Consensus 120 ~~~p~IL~iDEiD~i~~ 136 (375)
...|++||||.|+.+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 78899999999999976
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.05 E-value=5.4e-06 Score=71.83 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
|+.|+|.|+||+|||++++++++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 5679999999999999999999999988887543
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=3.3e-05 Score=68.32 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
.+.|.||+|+|||+|++.++..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 106
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.04 E-value=1.3e-05 Score=78.73 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~----~~Ge--------~~~~ir~~F~~A~~~~ 118 (375)
.|+++...++|+||||+|||+|+..++..+ +-..+.++.....+. ..|- ....+.++...+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 478888899999999999999999999874 555666665543210 0000 0011223344444455
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...+.+++||.+-.+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 678899999999988865
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.00 E-value=5.5e-06 Score=81.59 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=63.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCc--eEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCCceee
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMCCL 126 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~--~i~vs~s~l~s~~~Ge~~~~ir~~F~~A-----------~~~~~~~~p~IL 126 (375)
..+|++|++||||+.+|+++....+.. |+.++++.+-... .-..+|+.. ...+.......|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 359999999999999999999887654 8999988764221 111222110 001122244689
Q ss_pred eecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 017204 127 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187 (375)
Q Consensus 127 ~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~ 187 (375)
|||||+.+.. .++..|+.+++...-..+.+. ......+-||+|||.
T Consensus 227 fldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 227 FLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNK 272 (368)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESS
T ss_pred EecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCC
Confidence 9999987633 234555556552211111111 111235679999995
No 108
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.99 E-value=1.1e-06 Score=89.37 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=68.8
Q ss_pred EEEEEcCCCchHHHHHHHH-HHHhCCceEEecc--C---cc----ccC--CCCChHHHHHHHHHHHHHHHHhCCceeeee
Q 017204 61 ILGIWGGKGQGKSFQCELV-FAKMGINPIMMSA--G---EL----ESG--NAGEPAKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aI-A~elg~~~i~vs~--s---~l----~s~--~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
.|||.|+||| ||++|+++ ++-+....+. ++ + .| .+. |.-++ ..+. .....|+|+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~ss~~gLt~s~r~~tG~~~~~-----G~l~-------LAdgGvl~l 306 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRRTELTDLTAVLKEDRGWALRA-----GAAV-------LADGGILAV 306 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGGCCHHHHSEEEEESSSEEEEE-----CHHH-------HTTTSEEEE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCCCCccCceEEEEcCCCcccCC-----CeeE-------EcCCCeeeh
Confidence 6999999999 99999999 6654332222 11 0 01 111 10011 1111 223479999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----------CCChhhcC
Q 017204 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIR 197 (375)
Q Consensus 129 DEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~-----------~Ld~ALlR 197 (375)
|||+.+-.+ .+..|++.|... .+.+.|. .-..+..||+|+|... .|+++++-
T Consensus 307 DEIn~~~~~-------------~qsaLlEaMEe~-~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 307 DHLEGAPEP-------------HRWALMEAMDKG-TVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp ECCTTCCHH-------------HHHHHHHHHHHS-EEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred HhhhhCCHH-------------HHHHHHHHHhCC-cEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 999865322 234555555522 2233343 3446789999999865 78999995
Q ss_pred CCcceEEEe---CCCHHH
Q 017204 198 DGRMEKFYW---APTRED 212 (375)
Q Consensus 198 ~gRfd~~i~---~P~~~~ 212 (375)
|||.++. .|+.+.
T Consensus 370 --RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp --TCSEEEETTC------
T ss_pred --heeeEEEecCCCChhH
Confidence 9998777 465554
No 109
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=1.4e-05 Score=78.21 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC----CCCChH--------HHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~----~~Ge~~--------~~ir~~F~~A~~~~ 118 (375)
.|+++...++|+||||+|||+||..++... |...+.++...-.+. ..|-.. ..+.+.+..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 478788889999999999999999998764 455566554432211 111100 01233344444455
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...|.+|+||++.++..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 677899999999999874
No 110
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.96 E-value=2.8e-05 Score=76.67 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~~----~Ge~--------~~~ir~~F~~A~~~~ 118 (375)
.|++....++|+||||+|||+||..+|..+ |...+.++...-.+.+ .|.. ...+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 478888899999999999999999988764 5566666654322110 1110 001223334443444
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 567899999999999875
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.93 E-value=4.3e-05 Score=92.32 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=90.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~~r~ 139 (375)
.|..+.||+|||||.+++.+|+.+|..++.+++++-. ..+.+..+|.-+ ++ ..+...|||++.+-...
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~---~~--~GaW~cfDEfNrl~~~v- 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGL---CQ--CGAWGCFDEFNRLEERI- 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHH---HH--HTCEEEEETTTSSCHHH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhH---hh--cCcEEEehhhhcCCHHH-
Confidence 4667999999999999999999999999999988654 234455566544 22 34678999998753221
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCC-CccccCCCCCceEEEEeC----CCCCCChhhcCCCcceEEEe-CCCHHHH
Q 017204 140 GTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 213 (375)
Q Consensus 140 ~~~~~~~~~~~v~~~L~~lld~~~~v~l~-~~~~~~~~~~V~VI~TTN----~~~~Ld~ALlR~gRfd~~i~-~P~~~~R 213 (375)
-++..+.+......+.+....+.+. |. ...-.+..-|++|.| ....||++|.. ||--+-. .|+.+..
T Consensus 673 ----LSvv~~qi~~I~~a~~~~~~~~~~~~G~-~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 673 ----LSAVSQQIQTIQVALKENSKEVELLGGK-NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMI 745 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCCeEEecCCC-EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHH
Confidence 1222232322222333444444544 32 112345678999999 45789999997 5544443 8999888
Q ss_pred HHhh
Q 017204 214 IGVC 217 (375)
Q Consensus 214 ~~Il 217 (375)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 112
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.90 E-value=6.6e-05 Score=69.56 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhh-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 40 DKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 40 d~~~~~~~k~~l~-~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
..+...+.+.++. ......|..++|.||||+|||++|+.++..++...+.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4444445555443 2356678899999999999999999999999877777777665
No 113
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.89 E-value=1.3e-05 Score=78.71 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccccC----CCCChH--------HHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~s~----~~Ge~~--------~~ir~~F~~A~~~~ 118 (375)
.|+++...++|+||||+|||+||..+|.++ |...+.++...-.+. ..|... ..+.++...+..++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 478888899999999999999999988764 556677665432210 011100 01122333333344
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 578899999999998875
No 114
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.86 E-value=2e-05 Score=90.78 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCccc----cCCCCC--------hHHHHHHHHHHHHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAGE--------PAKLIRQRYREAADII 118 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l~----s~~~Ge--------~~~~ir~~F~~A~~~~ 118 (375)
.|+.+...++|+||||+|||+||..+|.++ +.+++.++..+.. ....|- .+..+.+++..+..++
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 378889999999999999999999998874 4466776665443 122221 1113456666665566
Q ss_pred HhCCceeeeecccccccC
Q 017204 119 KKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 119 ~~~~p~IL~iDEiD~i~~ 136 (375)
+...|.+|+||.+..+.+
T Consensus 807 ~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHTCCSEEEESCSTTCCC
T ss_pred HccCCCEEEEechhhhcc
Confidence 678999999999999874
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.84 E-value=2.9e-05 Score=70.31 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=54.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH--h-------CCceEEeccCcccc--------CCCC---------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELES--------GNAG--------------- 101 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e--l-------g~~~i~vs~s~l~s--------~~~G--------------- 101 (375)
.|++....++|+||||+|||+|++.++.. + +...+.++...... ...|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 47778889999999999999999999985 3 34566666544100 0011
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 102 e~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
.+...+...+..+.+.+....|.+|+|||+-.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01112223334444555678899999999987754
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.83 E-value=3e-05 Score=73.69 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHHhhhh-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc
Q 017204 35 APAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96 (375)
Q Consensus 35 ~~~~~d~~~~~~~k~~l~-~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~ 96 (375)
.+.-..++...++..++. ......|..++|.||||+|||++|+.++++++...+.+++..+.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 444456667777777764 23445678899999999999999999999986566777764443
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.82 E-value=0.00011 Score=65.62 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
|++....++|.||||+|||+|++.++..+ +...+.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67777889999999999999999999653 34444433
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.80 E-value=3.1e-05 Score=74.62 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCcccc--------CCCCC--------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 102 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s--------~~~Ge-------------- 102 (375)
.|+++...++|+||||+|||++|..+|... +...+.++...-.+ ...|-
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 477778889999999999999999999875 44566666543210 00111
Q ss_pred -hHHHHHHHHHHHHHHHHh-CCceeeeecccccccC
Q 017204 103 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 136 (375)
Q Consensus 103 -~~~~ir~~F~~A~~~~~~-~~p~IL~iDEiD~i~~ 136 (375)
+...+..++..+..+++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111122344455555566 8899999999988863
No 119
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.80 E-value=1.3e-05 Score=69.86 Aligned_cols=34 Identities=12% Similarity=-0.142 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.++.|+|.||||||||++++.+|+.+|+.++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3567999999999999999999999999888653
No 120
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.79 E-value=0.00012 Score=70.45 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=88.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCc-eEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceeeeecccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GIN-PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~-~i~vs~s~l~s~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD 132 (375)
+.+...|||||+|.||+..++++++.+ +.. +..+. + + |+ ..+++++..+...---+...|++|||.+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I-D---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C-C---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e-c---CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456689999999999999999998875 322 12221 1 1 11 2345666665222225667899999998
Q ss_pred c-ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC------CCCChhhcCCCcceEEE
Q 017204 133 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 205 (375)
Q Consensus 133 ~-i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~------~~Ld~ALlR~gRfd~~i 205 (375)
. +... ....|+..+. ++.+.+++|.+|+.+ ..+.+++.. |+..+-
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 6 4211 1233444555 333455666666654 346677765 554443
Q ss_pred e-CCCHHHHHHhhhhhcCCCC--CCHHHHHHHhcCCCh
Q 017204 206 W-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 240 (375)
Q Consensus 206 ~-~P~~~~R~~Il~~~l~~~~--v~~~~la~lt~gf~g 240 (375)
. .|+..+....++..+...+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 4 7788888888777776655 555555555554443
No 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.78 E-value=1.9e-05 Score=68.98 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
|.+.|+.|+|.|+||+|||++++.+++.+|..++.
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34567889999999999999999999999987665
No 122
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.75 E-value=4.5e-05 Score=73.92 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=51.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccCcccc----CCCCCh--------HHHHHHH-HHHHH
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----GNAGEP--------AKLIRQR-YREAA 115 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s~l~s----~~~Ge~--------~~~ir~~-F~~A~ 115 (375)
.|+++. .++|+||||+|||+||..++.+. |-..+.++..+-.+ ...|-. +....++ +..+.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 466655 68999999999999988777664 55666776554321 111110 0112222 22222
Q ss_pred HH--HHhCCceeeeecccccccCC
Q 017204 116 DI--IKKGKMCCLMINDLDAGAGR 137 (375)
Q Consensus 116 ~~--~~~~~p~IL~iDEiD~i~~~ 137 (375)
.+ ++..+|.+|+||-|-++.++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 22 46778999999999998753
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.75 E-value=4.5e-05 Score=68.36 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....+.|.||+|+|||+|++.++...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 477778889999999999999999999854
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00015 Score=65.76 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA 80 (375)
|++....++|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 77788889999999999999999988
No 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.71 E-value=7.5e-05 Score=72.95 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CceEEeccCcccc--------CCCC-------------C-
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAG-------------E- 102 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---------~~~i~vs~s~l~s--------~~~G-------------e- 102 (375)
.|++....++|+||||+|||+|++.++.... -..+.++..+... ...+ .
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 4777778899999999999999999999862 2335665543210 0000 0
Q ss_pred -hHHHHHHHHHHHHHHHHh-----CCceeeeeccccccc
Q 017204 103 -PAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA 135 (375)
Q Consensus 103 -~~~~ir~~F~~A~~~~~~-----~~p~IL~iDEiD~i~ 135 (375)
......+++..+..++.. ..|.+|+|||+-++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 012233445555555666 789999999997765
No 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.70 E-value=2.5e-05 Score=68.05 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
....++.|+|.|+||+|||++++.+++.++..++.+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 344556799999999999999999999999877654
No 127
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.70 E-value=0.0001 Score=56.13 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.6
Q ss_pred CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHH
Q 017204 207 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 245 (375)
Q Consensus 207 ~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~ 245 (375)
+|+.++|.+||+.++... +++.+.|++.|+||||+||..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 699999999999998764 677888999999999999964
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=2.5e-05 Score=69.52 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.+++.+.|+|.||||||||++++++|+.+|..++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3445678999999999999999999999999887654
No 129
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.69 E-value=8.4e-05 Score=69.22 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH---hCCceEEeccCccccC---CCCChHHHHHHHHHHH-HHHHHhCCceeeeecc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEPAKLIRQRYREA-ADIIKKGKMCCLMIND 130 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s~l~s~---~~Ge~~~~ir~~F~~A-~~~~~~~~p~IL~iDE 130 (375)
.+..|+|.|+||+|||++|+.++.. .|..++.++...+... |....+..++.....+ ...+ . . ..+++|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l-~-~-~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSAL-K-N-YWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHH-T-T-SEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-h-C-CEEEEeC
Confidence 3567999999999999999999998 7888876665544322 3323444444433222 1122 2 2 6677775
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.69 E-value=9.8e-05 Score=73.61 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCcccc--------CCCCC--------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 102 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s--------~~~Ge-------------- 102 (375)
.|+++...++|+||||+|||+|++.++... +...+.++..+... ..+|-
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 477778889999999999999999776443 22356665543211 00111
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceeeeecccccccC
Q 017204 103 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 136 (375)
Q Consensus 103 -~~~~ir~~F~~A~~~~~~~~p~IL~iDEiD~i~~ 136 (375)
..........++...+....|.+|+||++-.+..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0112233445555566678899999999987754
No 131
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.64 E-value=3.9e-05 Score=70.25 Aligned_cols=41 Identities=32% Similarity=0.567 Sum_probs=33.4
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcc
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l 95 (375)
....+.|+.|+|.||||+||+++|+.|++++|+. .++.+++
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdl 63 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDL 63 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHH
Confidence 4577888999999999999999999999999765 4554444
No 132
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.61 E-value=4.6e-05 Score=67.59 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.-..|..|+|.|+||+|||++|+.+++.+|+.++.+
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 334567899999999999999999999999887664
No 133
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.60 E-value=0.00014 Score=56.87 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 207 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 207 ~P~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+|+.++|.+||+.++++. +++.+.|++.|+||||+||..+
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l 53 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGV 53 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 899999999999998763 6778889999999999999743
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.58 E-value=0.0001 Score=70.65 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------------C----CceEEeccCccccC--------CCCC----
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------------G----INPIMMSAGELESG--------NAGE---- 102 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------------g----~~~i~vs~s~l~s~--------~~Ge---- 102 (375)
.|+++...++|+||||+|||++|..+|... | ...+.++...-.+. ..|-
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~ 172 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQT 172 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 477777889999999999999999999763 2 34555554432100 0010
Q ss_pred -----------hHHHHHHHHHHHHHHHHh-CCceeeeecccccccC
Q 017204 103 -----------PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 136 (375)
Q Consensus 103 -----------~~~~ir~~F~~A~~~~~~-~~p~IL~iDEiD~i~~ 136 (375)
+...+..++..+..++++ ..+.+|+||.+..+..
T Consensus 173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 111112233344445566 7899999999988753
No 135
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.57 E-value=5.3e-05 Score=64.73 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|+|.||||+|||++++.+++.+++.++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876644
No 136
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.57 E-value=3.9e-05 Score=66.87 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=28.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
..|+|.|+||+|||++|+.+++.+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999877543
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=5.7e-05 Score=65.80 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
|+.|+|.|+||+|||++|+.+++.+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999987654
No 138
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=0.00014 Score=70.81 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=53.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCceEEeccCcccc--------CCCCCh-------------
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGEP------------- 103 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---------g~~~i~vs~s~l~s--------~~~Ge~------------- 103 (375)
.|++....++|+||||+|||+||..+|... +...+.++.....+ ...|-.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 477777889999999999999999999873 44556665543211 000100
Q ss_pred --HHHHHHHHHHHHHHHHh--CCceeeeecccccccC
Q 017204 104 --AKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG 136 (375)
Q Consensus 104 --~~~ir~~F~~A~~~~~~--~~p~IL~iDEiD~i~~ 136 (375)
...+..+...+..+++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01112333344455566 7899999999998864
No 139
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.53 E-value=5.3e-05 Score=66.34 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.++.|+|.|+||+|||++|+.+++.+|..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999999876654
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=6e-05 Score=64.80 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
+..|.|.||||+|||++++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4568999999999999999999999976554
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.52 E-value=5e-05 Score=66.42 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
.++.+..+.|.||||+|||++++.++...+...+.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 4566788999999999999999999998777777776543
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.52 E-value=5.2e-05 Score=66.64 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH-hCCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK-MGINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e-lg~~~i~vs 91 (375)
.+..|+|.|+||||||++++.+++. +|++++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3457999999999999999999999 787776543
No 143
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.52 E-value=6.8e-05 Score=67.52 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+.+..|+|.|+||+|||++|+.+|+.+++.++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3567899999999999999999999999876654
No 144
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.50 E-value=6.4e-05 Score=65.16 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|+|.||||+|||++|+.+|+.+++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987765
No 145
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=5e-05 Score=65.37 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH-HhCCc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFA-KMGIN 86 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~-elg~~ 86 (375)
|+.|+|.||||+|||++|+.+++ .++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 57799999999999999999999 45543
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.49 E-value=8.1e-05 Score=63.95 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=28.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
..|+|.|+||||||++++.+|+.+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999887643
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.47 E-value=5.6e-05 Score=65.52 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPI 88 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i 88 (375)
|+.|+|.|+||+|||++|+.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 567999999999999999999999998876
No 148
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.47 E-value=5.9e-05 Score=68.35 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
..|..|+|.|+||+|||++|+.+|+.+|..++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4567899999999999999999999998776654
No 149
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.47 E-value=9.6e-05 Score=64.20 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+.|+|.|+||+|||++|+.+++.+|+.++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 467899999999999999999999999776654
No 150
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.46 E-value=6.6e-05 Score=63.78 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
..|+|.||||+|||++|+.+ +.+|..++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887764
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.46 E-value=6.7e-05 Score=65.83 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+.|+|.|+||+|||++|+.+++.+|..++.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999999766553
No 152
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.45 E-value=8.6e-05 Score=65.86 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
++.|+|.|+||+|||++|+.+++.+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56899999999999999999999998776653
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.45 E-value=7.4e-05 Score=65.02 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
+..|+|.|+||+|||++++.+++.+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876554
No 154
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.44 E-value=0.0014 Score=67.29 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
.++.++|+||+|+|||+||..+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 457899999999999999999875
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.43 E-value=8.5e-05 Score=65.75 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+.++.|+|.|+||+|||++++.+++.+|+.++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3456799999999999999999999999866654
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.43 E-value=8.7e-05 Score=68.47 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+.|..|+|.||||+|||++|+.+++++|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998766653
No 157
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.0003 Score=63.55 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~e----lg~~~i~vs 91 (375)
.|+++...++|+|+||+|||++|..+|.+ .+.+.+.++
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 47888888999999999999999877644 355665554
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.40 E-value=8.8e-05 Score=64.43 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
++.|+|.||||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.40 E-value=0.0001 Score=63.28 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+.|+|.|+||+|||++|+.+++.+|++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999877653
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.39 E-value=0.00024 Score=64.02 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=67.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCceEEe---ccC------ccccCC-----------CCC------hHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SAG------ELESGN-----------AGE------PAKLIRQRY 111 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e---lg~~~i~v---s~s------~l~s~~-----------~Ge------~~~~ir~~F 111 (375)
-|++|+++|.|||+.|-.+|-. .|..+..+ ++. .+.... .-. .....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 4779999999999999988777 46666665 431 122221 111 134566777
Q ss_pred HHHHHHHHhCCceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 017204 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 191 (375)
Q Consensus 112 ~~A~~~~~~~~p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~~L 191 (375)
..+.+.+......+|++||+--...-.- ..... +++++. ....++-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~e----v~~~l~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEE----VISALN-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHH----HHHHHH-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHH----HHHHHH-------------hCcCCCEEEEECCCC---
Confidence 7776666678889999999943221110 00111 222223 344567899999986
Q ss_pred Chhhc
Q 017204 192 YAPLI 196 (375)
Q Consensus 192 d~ALl 196 (375)
+++|+
T Consensus 164 p~~l~ 168 (196)
T 1g5t_A 164 HRDIL 168 (196)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 46665
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.00026 Score=63.90 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|+++...++|+||||+|||+++..++... +...+.++
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 477777889999999999999998887652 44555544
No 162
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.37 E-value=0.00014 Score=66.26 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.+..|+|.|+||+|||++|+.+|+++++.++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999876654
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.37 E-value=0.00013 Score=67.76 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
.++|.||||+|||++|+.+|++++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999988877654
No 164
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.33 E-value=0.00011 Score=65.68 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+|.||||+|||++|+.+++++|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998876654
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.32 E-value=0.00012 Score=65.36 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+|.||||+|||++|+.+++++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
No 166
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.31 E-value=0.00013 Score=65.74 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
+..|+|.|+||+|||++|+.+|+.+|+.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999877654
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.31 E-value=0.00018 Score=63.92 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceE
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 88 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i 88 (375)
+.+..+.|.||||+|||++++.++..+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 45678999999999999999999999976443
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.31 E-value=0.00018 Score=62.04 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+..++|.||||+|||++++.++..+|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34678999999999999999999998765544
No 169
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.30 E-value=0.00019 Score=61.38 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+|.|+||+|||++|+.+++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887753
No 170
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=0.00012 Score=71.82 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..++|+||||+|||++++++|+.++++|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468899999999999999999999988854
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.29 E-value=0.00012 Score=66.06 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|+.|+|.||||+|||++++.+|+.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999975543
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.27 E-value=0.00022 Score=61.93 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
..+..|.|.|++|+|||++++.++..+ |++++.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 456778999999999999999999998 9888877644
No 173
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.27 E-value=0.00053 Score=69.23 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=65.6
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe-----CCCCCCChhhcC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-----NDFSTLYAPLIR 197 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TT-----N~~~~Ld~ALlR 197 (375)
..||++||||+++.+.+ +....+...-+++.|+.++++.++.. .+...+.++|++|+|+ |..+.+ |+|+
T Consensus 251 ~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~dli-pel~- 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSDLI-PELQ- 324 (444)
T ss_dssp HCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGGSC-HHHH-
T ss_pred CCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhhcc-hHHh-
Confidence 46999999999987643 23455666778899999999644332 2344567889999998 555544 7787
Q ss_pred CCcceEEEe--CCCHHHHHHhh
Q 017204 198 DGRMEKFYW--APTREDRIGVC 217 (375)
Q Consensus 198 ~gRfd~~i~--~P~~~~R~~Il 217 (375)
|||...+. ..+.++..+|+
T Consensus 325 -~R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 325 -GRLPIRVELTALSAADFERIL 345 (444)
T ss_dssp -TTCCEEEECCCCCHHHHHHHH
T ss_pred -cccceeeeCCCCCHHHHHHHH
Confidence 69999887 57889999998
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.27 E-value=0.0002 Score=65.64 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|..+.|.||||+|||++++.+++.+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36789999999999999999999999876554
No 175
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.26 E-value=0.00019 Score=64.95 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|+|.||||+||+++|+.||+++|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999876443
No 176
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.25 E-value=0.00094 Score=64.68 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s 93 (375)
.++.|+|.||+|+|||++|+.+|++++..++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 356899999999999999999999999888887543
No 177
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.24 E-value=0.00024 Score=65.22 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=44.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKM 123 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~-------l~s~~~Ge~-----~~~ir~~F~~A~~~~~~~~p 123 (375)
...++++||||+|||+++..++..+ |...+.++... +.+. .|-. .....+++..+.+.+....+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3567889999999999998887775 55566553222 2222 2311 01122445544222223568
Q ss_pred eeeeeccccc
Q 017204 124 CCLMINDLDA 133 (375)
Q Consensus 124 ~IL~iDEiD~ 133 (375)
.+|+|||+--
T Consensus 91 dvViIDEaQ~ 100 (223)
T 2b8t_A 91 KVIGIDEVQF 100 (223)
T ss_dssp CEEEECSGGG
T ss_pred CEEEEecCcc
Confidence 8999999954
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.00078 Score=59.70 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 94 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~ 94 (375)
..+..+.|.||+|+|||+++++++..+ |...+.+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456789999999999999999999998 55433444433
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.20 E-value=0.00025 Score=63.62 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
+..|.|.||||+|||++++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999976654
No 180
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00052 Score=59.90 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
-|.|.|+||+|||++++.+++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 98887654
No 181
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.16 E-value=0.00026 Score=62.31 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh-CCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~vs 91 (375)
.++.|.|.|+||+|||++++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45679999999999999999999998 57777654
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.16 E-value=0.0021 Score=61.69 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcc--------------------ccCCCCChHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL--------------------ESGNAGEPAKLIRQRYR 112 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l--------------------~s~~~Ge~~~~ir~~F~ 112 (375)
.+.|..++|.||+|+|||+++..+|..+ |..+..+..... .....+++.+.+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3467889999999999999999999875 444444332211 01112333333333344
Q ss_pred HHHHHHHhCCceeeeeccc
Q 017204 113 EAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEi 131 (375)
.+ ....+.+|+||+.
T Consensus 181 ~a----~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HA----LARNKDVVIIDTA 195 (306)
T ss_dssp HH----HHTTCSEEEEEEC
T ss_pred HH----HhcCCCEEEEECC
Confidence 33 5677899999976
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.15 E-value=0.00035 Score=60.73 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|.|.|+||+|||++++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887764
No 184
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.13 E-value=0.00028 Score=63.23 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|+|.||||+|||++|+.+++.+|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877665
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.13 E-value=0.0021 Score=64.65 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs 91 (375)
.|+++..-++|.|+||+|||+|+..+|... |.+++.++
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 477777889999999999999999888763 44565554
No 186
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.09 E-value=0.0011 Score=51.85 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.8
Q ss_pred CHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 209 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+.++|.+|++.++.+. +++.+.|++.|+||||+||..+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l 43 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 43 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHH
Confidence 5678999999888654 5678889999999999999643
No 187
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.09 E-value=0.00037 Score=64.44 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|..+.|.||||+|||++++.+|+.+|+.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 45689999999999999999999999976654
No 188
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.0002 Score=62.07 Aligned_cols=24 Identities=29% Similarity=0.098 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.|+|.|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999886
No 189
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.09 E-value=0.00034 Score=61.27 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.|.|.|+||+|||++++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986654
No 190
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.07 E-value=0.00036 Score=61.50 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
++.|+|.|+||+|||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999998874
No 191
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.07 E-value=0.00045 Score=60.88 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|.|.|++|+|||++++.+|+.+|++++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998877643
No 192
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.07 E-value=0.00035 Score=63.29 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
-|+|.||||+|||++|+.+++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00037 Score=61.81 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..+.|.||+|+|||++++.++. +|..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4688999999999999999988 8877765
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00044 Score=60.69 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|..|.|.|++|+|||++++.+++. |+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 4678999999999999999999998 8776653
No 195
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.04 E-value=0.0086 Score=66.09 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..++.+.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34677999999999999999998876
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.03 E-value=0.00018 Score=63.74 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
+.|+.|.|.|+||+|||++++.+++.++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3467899999999999999999999876543
No 197
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.03 E-value=0.00034 Score=61.86 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
.|.|.|++|+|||++++.+++ +|+.++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766643
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.02 E-value=0.00048 Score=64.53 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCccc-----------cCCCCChHHHHHHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE-----------SGNAGEPAKLIRQRYREAADIIKKG 121 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l~-----------s~~~Ge~~~~ir~~F~~A~~~~~~~ 121 (375)
+++...++|.||+|+|||++.++++..+. ..-+.+.+..+. ...+|.....++..+..| -..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~a----L~~ 97 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA----LRE 97 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----HHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHH----Hhh
Confidence 45556789999999999999999998752 122222221110 001121112234444444 345
Q ss_pred Cceeeeeccc
Q 017204 122 KMCCLMINDL 131 (375)
Q Consensus 122 ~p~IL~iDEi 131 (375)
.|.+|++||.
T Consensus 98 ~p~illlDEp 107 (261)
T 2eyu_A 98 DPDVIFVGEM 107 (261)
T ss_dssp CCSEEEESCC
T ss_pred CCCEEEeCCC
Confidence 8999999998
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00022 Score=63.21 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
+.|+.|.|.|+||+|||++++.+++.++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 346789999999999999999999987543
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.99 E-value=0.001 Score=59.41 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CceEEeccCcc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 95 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg----~~~i~vs~s~l 95 (375)
...+..|+|.|+||+|||++++.++..++ .+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 35567899999999999999999999764 55677765444
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.98 E-value=0.0011 Score=58.82 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 38 FMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 38 ~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.++.++.++.+. ....+..+.|.||+|+|||++++.++..+ +..++..+
T Consensus 6 ~~~~l~~~~~~~-----~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 6 RIDFLCKTILAI-----KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp HHHHHHHHHHTS-----CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHh-----ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 445555555433 34566789999999999999999999876 55555443
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.97 E-value=0.00038 Score=61.83 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCceEEe
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMM 90 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el-g~~~i~v 90 (375)
+.++.+..+.|.||||+|||++++.++..+ ++.++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 355667789999999999999999999987 5554443
No 203
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.96 E-value=0.0016 Score=63.39 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s 93 (375)
.++.|+|.||+|+|||+|+..+|++++..+|..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456799999999999999999999999887775543
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.00076 Score=66.10 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=41.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC----CceEEec-cCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceee
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG----INPIMMS-AGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCL 126 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg----~~~i~vs-~s~l~s---------~~~Ge~~~~ir~~F~~A~~~~~~~~p~IL 126 (375)
.+++.||+|+|||++.++++..+. ..++.+. ..++.. ..++.....+...+..| -...|.||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdvi 200 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDII 200 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCEE
Confidence 588999999999999999988753 3333322 111110 11122111223334444 57899999
Q ss_pred eeccc
Q 017204 127 MINDL 131 (375)
Q Consensus 127 ~iDEi 131 (375)
++||+
T Consensus 201 llDEp 205 (356)
T 3jvv_A 201 LVGEM 205 (356)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99999
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.96 E-value=0.0044 Score=62.10 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~ 92 (375)
.|+++..-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 578888889999999999999999888763 455666543
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.96 E-value=0.0048 Score=62.19 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcc-------------------cc-CCCCChHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-------------------ES-GNAGEPAKLIRQRYREA 114 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l-------------------~s-~~~Ge~~~~ir~~F~~A 114 (375)
.|..|++.|+||+|||+++..+|..+ |..+..+++... .. .....+...++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998775 566666554322 11 11223455555656555
Q ss_pred HHHHHhCCceeeeeccc
Q 017204 115 ADIIKKGKMCCLMINDL 131 (375)
Q Consensus 115 ~~~~~~~~p~IL~iDEi 131 (375)
+.....++|||..
T Consensus 179 ----~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 ----KSKGVDIIIVDTA 191 (443)
T ss_dssp ----HHTTCSEEEEECC
T ss_pred ----HhCCCCEEEEECC
Confidence 6667889999976
No 207
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.95 E-value=0.00054 Score=68.32 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..|..|+|.|+||+|||++|+.+++.+++.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 356789999999999999999999998765443
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.93 E-value=0.0014 Score=56.92 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCEL 78 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~a 78 (375)
++.+..+.|.||+|+|||+|+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34566789999999999999994
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.92 E-value=0.0006 Score=62.83 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCce--------EEeccCccc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELE 96 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~--------i~vs~s~l~ 96 (375)
..|..|.|.|+||+|||++|+.+++.+|+++ ..++...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4567899999999999999999999999763 345555554
No 210
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.88 E-value=0.00068 Score=60.57 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
|..|.|.|+||+|||++++.++..+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45689999999999999999999999877664
No 211
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.87 E-value=0.0008 Score=62.24 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
....|.|.||+|+|||++++.+|+.+|+.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34578999999999999999999999987664
No 212
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00082 Score=60.15 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|..|.|.|++|+|||++++.++. +|..++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 357899999999999999999998 88766654
No 213
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00085 Score=61.13 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
....+..|.|.|++|+|||++++.++..+|+.++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34556679999999999999999999999987665
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.86 E-value=0.0017 Score=65.97 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~ 92 (375)
.|+.+...++|.|+||+|||++|..+|... |.+++.++.
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 367777889999999999999999998874 445666553
No 215
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.86 E-value=0.0012 Score=67.89 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
.|..|+|.|.||+|||++|+.+|..+++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45679999999999999999999998543
No 216
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.00098 Score=58.12 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~ 92 (375)
..+..|+|.|+||+|||++++.++..++ ..+..+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4567899999999999999999999874 33444443
No 217
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.84 E-value=0.001 Score=59.42 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+.+..+.|.||+|+|||+|++.|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45667889999999999999999999875
No 218
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.84 E-value=0.0025 Score=58.41 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCceEEeccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s 93 (375)
.+++.||+|+|||.++.+++..++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999987776665544
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.84 E-value=0.0053 Score=58.71 Aligned_cols=38 Identities=16% Similarity=-0.110 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|+++..-++|.|+||+|||++|..+|... |.+.+.++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 578888889999999999999999998764 34455544
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.83 E-value=0.00064 Score=60.75 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
-..|.|.|++|||||++++.+++.+|++++..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 356889999999999999999999898777644
No 221
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00076 Score=62.87 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
...|.|.||||+|||++++.+|..+|+.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 456999999999999999999999999877743
No 222
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.79 E-value=0.0007 Score=63.61 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh-CCceE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 88 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el-g~~~i 88 (375)
|+.|+|.|+||+|||++|+.+++.+ ++.++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 55444
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.00096 Score=62.87 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.|..|.|.|+||+|||++|+.++ ++|+.++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 36789999999999999999999 688776554
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.74 E-value=0.013 Score=60.70 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=44.2
Q ss_pred eeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhcCCCcc
Q 017204 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRM 201 (375)
Q Consensus 124 ~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~TTN~~~--~Ld~ALlR~gRf 201 (375)
.+|+|||+..+....+ ..+...|..+.. . -..-+|-+|++|.+|. .|+..++--...
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar---------~---GRa~GIhLIlaTQRPs~d~I~~~Iran~~~ 403 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ---------K---ARAAGIHLILATQRPSVDVITGLIKANIPT 403 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH---------H---CTTTTEEEEEEESCCCTTTSCHHHHHTCCE
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH---------H---HhhCCeEEEEEecCcccccccHHHHhhhcc
Confidence 5899999987754321 112223333322 1 3456789999999998 788776543222
Q ss_pred eEEEeCCCHHHHHHhh
Q 017204 202 EKFYWAPTREDRIGVC 217 (375)
Q Consensus 202 d~~i~~P~~~~R~~Il 217 (375)
-..+...+..+...|+
T Consensus 404 RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 404 RIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEECCSCHHHHHHHH
T ss_pred EEEEEcCCHHHHHHhc
Confidence 2223377777776665
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.74 E-value=0.0012 Score=64.88 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+++...++|.||+|+|||++.++++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4556678999999999999999999875
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.73 E-value=0.0008 Score=59.17 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+..+..+.|.||+|+|||++++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999876
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.72 E-value=0.00095 Score=59.32 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..++.++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567799999999999999999999885
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.69 E-value=0.0068 Score=60.98 Aligned_cols=39 Identities=15% Similarity=-0.118 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
.|+.+..-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 378777889999999999999999888764 556666553
No 229
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.69 E-value=0.0012 Score=63.63 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
+.|+.++|.||+|+|||+||..+|+.++..++..+.-.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 45678999999999999999999999987777665443
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.62 E-value=0.0073 Score=60.70 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|..+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47889999999999999999998765 55665554
No 231
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.60 E-value=0.0011 Score=58.70 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC--CceEE
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 89 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg--~~~i~ 89 (375)
+.+..+.|.||+|+|||++++.++..++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4567899999999999999999999987 55444
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.54 E-value=0.0014 Score=58.60 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
+.+..+.|.||+|+|||++++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34667899999999999999999998753
No 233
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.52 E-value=0.0032 Score=60.80 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=30.9
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 48 k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..++.....+.|..+.|.||+|||||++++.++..++
T Consensus 81 ~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 81 YQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555567788999999999999999999999875
No 234
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.51 E-value=0.0019 Score=57.95 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 378999999999999999999999999885
No 235
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.50 E-value=0.0067 Score=62.29 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
..++.|.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999997
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0018 Score=56.54 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..+.+.|.||+|+|||+|++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999998764
No 237
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.48 E-value=0.002 Score=56.23 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..++|.||||+|||++++.++...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4578999999999999999998654
No 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.48 E-value=0.017 Score=58.98 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHH--HHHh--CCceEEecc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSA 92 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aI--A~el--g~~~i~vs~ 92 (375)
+++....++|.||+|+|||+|++.+ +... +..-+.+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6777788999999999999999994 4432 344455544
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.45 E-value=0.0018 Score=63.16 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
++.|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3578999999999999999999999866665543
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.45 E-value=0.0019 Score=56.70 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
+.+..+.|.||+|+|||+|++.++..+. .+.+..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 3456789999999999999999999863 344443
No 241
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.43 E-value=0.0033 Score=59.95 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=28.9
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 48 k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.++.......+..+.|.||+|+|||+|++.++..++
T Consensus 69 ~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 69 EQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444333446677899999999999999999999876
No 242
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.42 E-value=0.0071 Score=63.52 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEeccCcc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 95 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s~l 95 (375)
.+..|+|.|+||+|||++|+++++.+ |.+++.+++-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56789999999999999999999999 999988865444
No 243
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.41 E-value=0.0021 Score=59.21 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
..|++.|+||+|||+++-.+|..+ |..++.+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 568999999999999999888774 66655433
No 244
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.37 E-value=0.017 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
..|+.|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999775 666666654
No 245
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.36 E-value=0.0023 Score=59.00 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=26.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEe
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 90 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~v 90 (375)
.-+.|.||||+|||++|+.+++.+|+..+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3577899999999999999999998776543
No 246
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.31 E-value=0.0023 Score=61.86 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
++.|+|.||+|+|||+||..+|+.++..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 4568899999999999999999999876665443
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.30 E-value=0.0021 Score=56.27 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
|+.+.|.||+|+|||++++.++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 248
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.28 E-value=0.0056 Score=58.12 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..+.|..|.|.||+|+|||++++.++..++.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4457788999999999999999999998763
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.27 E-value=0.0034 Score=60.62 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCcccc-----C---CCCChHHHHHHHHHHHHHHHHhCCceeeee
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELES-----G---NAGEPAKLIRQRYREAADIIKKGKMCCLMI 128 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~l~s-----~---~~Ge~~~~ir~~F~~A~~~~~~~~p~IL~i 128 (375)
...++|.||+|+|||+|.++++..... ..+.+.+..... . ++.......+..+.+| -...|.+|++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilil 246 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIIL 246 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEE
Confidence 346999999999999999999998643 345554432111 0 1100112233455555 5778999999
Q ss_pred cccc
Q 017204 129 NDLD 132 (375)
Q Consensus 129 DEiD 132 (375)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9984
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.25 E-value=0.011 Score=59.45 Aligned_cols=72 Identities=10% Similarity=-0.018 Sum_probs=48.5
Q ss_pred ceeeeecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE---------eC---CCCC
Q 017204 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT---------GN---DFST 190 (375)
Q Consensus 123 p~IL~iDEiD~i~~~r~~~~~~~~~~~~v~~~L~~lld~~~~v~l~~~~~~~~~~~V~VI~T---------TN---~~~~ 190 (375)
|.|+||||+|.+.. ....+|+..+. ++...++|++| || .+..
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPIVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCEEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCEEEEecCCcccccccccccccccc
Confidence 46999999998732 23345555555 33344544454 32 2778
Q ss_pred CChhhcCCCcceEEEe-CCCHHHHHHhhhhhcC
Q 017204 191 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFR 222 (375)
Q Consensus 191 Ld~ALlR~gRfd~~i~-~P~~~~R~~Il~~~l~ 222 (375)
|+|.++. ||..+.. .|+.++..+|++....
T Consensus 350 l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 350 IPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp CCHHHHT--TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CChhHHh--hcceeeCCCCCHHHHHHHHHHHHH
Confidence 9999986 8877644 7899999999987654
No 251
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.24 E-value=0.015 Score=66.11 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.+++..-+.|.||+|+|||+|++++......
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 4556677999999999999999999988643
No 252
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.22 E-value=0.003 Score=57.82 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
.++.+..+.|.||+|+|||++++.++..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 44556678999999999999999999988753
No 253
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.21 E-value=0.0028 Score=63.18 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
+++.|+|.||+|+|||+||..+|..++..++..+
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 3567889999999999999999999987766543
No 254
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0024 Score=57.81 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~ 92 (375)
.++++|.||+|+|||+||..+++..+ .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 57899999999999999999998865 5554443
No 255
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.10 E-value=0.0037 Score=57.13 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
...|.|.|++|||||++++.+|+.+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3578999999999999999999999998765
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.06 E-value=0.0046 Score=56.40 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.+.++-|.|.||||+|||++++.+++.++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345677889999999999999999999863
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.06 E-value=0.0057 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
-|.|.||+|+|||+|++.+.++..-.|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 388999999999999999988865433
No 258
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.04 E-value=0.0077 Score=62.25 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=41.2
Q ss_pred cCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCcc
Q 017204 32 LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 95 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l 95 (375)
..+|+.|+-.-+..+++.+... ..+.+..|+|.|+||+|||++|+.+++.++ .++..+++..+
T Consensus 346 ~~~p~~~~r~eV~~~lr~~~~~-~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 346 RKLPEWFTRPEVAEILAETYVP-KHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCC-GGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CCCCccccchhHHHHHHHhhcc-ccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3345555433344555555432 224467899999999999999999999875 45566654433
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.98 E-value=0.0036 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+++.+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998764
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.97 E-value=0.0049 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358899999999999999887764
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.0032 Score=58.68 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.|++....++|+||||+|||+|+..++..+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 377777889999999999999999998753
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.96 E-value=0.0045 Score=55.05 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||+|+|||+|+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455666799999999999999999999874
No 263
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0021 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
.|.|.|++|+|||++++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999853
No 264
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.93 E-value=0.01 Score=61.73 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CceEEeccCcc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 95 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg----~~~i~vs~s~l 95 (375)
...+..|+|.|+||+|||++|+++++.++ .+++.+++..+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 34567899999999999999999999987 67777765544
No 265
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.91 E-value=0.0052 Score=63.06 Aligned_cols=53 Identities=11% Similarity=-0.077 Sum_probs=38.9
Q ss_pred cCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 32 LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 32 ~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..+|+.|+-.-+..+++.+... ..+.+..|.|.|.+|||||++++++|+.++.
T Consensus 369 ~~~P~~f~rpeV~~vLr~~~~~-~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEVVKILRESNPP-RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCC-GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhhHHHHHHhccc-ccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456666665566666665532 2344568899999999999999999999985
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.90 E-value=0.0048 Score=57.86 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++++...++|.||||+|||+|++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578888899999999999999999998874
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.87 E-value=0.0077 Score=54.13 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++.+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998865
No 268
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.86 E-value=0.0097 Score=57.84 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|+.+..-++|.|+||+|||++|..+|... |.++..++
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 488888889999999999999999988773 55555544
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.83 E-value=0.0046 Score=55.76 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|+|||+|++.++...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34555678999999999999999999976
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.81 E-value=0.025 Score=56.68 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s 93 (375)
+.|+.|++.|++|+|||+++-.+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457899999999999999999998775 6667766654
No 271
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.79 E-value=0.011 Score=59.53 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
..|..|+|.|.||+|||++++.++..++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 346789999999999999999999997643
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.79 E-value=0.027 Score=56.03 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCceEEeccC---------------ccccCCCCC-hHHHHHHH---HH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGE-PAKLIRQR---YR 112 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el-----g~~~i~vs~s---------------~l~s~~~Ge-~~~~ir~~---F~ 112 (375)
....-++|.||||||||+|++.|++.. ++.++.+-.+ .+......+ +...++.. ..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt 251 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 251 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334568999999999999999998864 3333332111 111111222 22222221 22
Q ss_pred HHHHHHHhCCceeeeeccccccc
Q 017204 113 EAADIIKKGKMCCLMINDLDAGA 135 (375)
Q Consensus 113 ~A~~~~~~~~p~IL~iDEiD~i~ 135 (375)
.|.-....++..+||+|++-..+
T Consensus 252 ~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 252 KAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp HHHHHHHTSCEEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEEeCchHHH
Confidence 23223347888999999997663
No 273
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0036 Score=59.38 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC---CceEEeccCcc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 95 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs~s~l 95 (375)
+..|.|.||+|+|||++|+.+++.++ ..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 45799999999999999999999876 34445554433
No 274
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.79 E-value=0.041 Score=60.22 Aligned_cols=26 Identities=23% Similarity=0.043 Sum_probs=21.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
+.....++|.||.|+|||++.+.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 34456799999999999999998874
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.78 E-value=0.0069 Score=52.28 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||.|+|||+|.+.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44555679999999999999999999987
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.77 E-value=0.023 Score=53.91 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++.+.+.|++|+|||+++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999998874
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.73 E-value=0.017 Score=60.46 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH---hCCceEEeccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 93 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e---lg~~~i~vs~s 93 (375)
-.|++||||||||+++-.+..+ .+..++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 4689999999999865544433 25555555555
No 278
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.71 E-value=0.0074 Score=46.12 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=32.2
Q ss_pred CHHHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 209 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 209 ~~~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
+.++|.+|++.++.+. +++.+.|++.|+||||+||..+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l 43 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSI 43 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 6789999999998764 5678889999999999999643
No 279
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.66 E-value=0.0072 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
|+-|.|.|++|+|||++++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999999984
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.64 E-value=0.027 Score=53.58 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
+..+++.|++|+|||+++..+|..+ |..+..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7788999999999999999999775 555555443
No 281
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.64 E-value=0.016 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
++.+..+.|.||+|+|||++++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999875
No 282
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.64 E-value=0.01 Score=59.56 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999886
No 283
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.63 E-value=0.0078 Score=57.73 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
++.+..+.|.||+|+|||+|++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56778899999999999999999999864
No 284
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.63 E-value=0.065 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+..|.|.|+||+|||+++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998875
No 285
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.60 E-value=0.073 Score=54.50 Aligned_cols=40 Identities=5% Similarity=0.139 Sum_probs=27.5
Q ss_pred CCceEEEEeCCCC--CCChhhcCCCcceE-EEe-CCCHHHHHHhhh
Q 017204 177 PRVPIIVTGNDFS--TLYAPLIRDGRMEK-FYW-APTREDRIGVCK 218 (375)
Q Consensus 177 ~~V~VI~TTN~~~--~Ld~ALlR~gRfd~-~i~-~P~~~~R~~Il~ 218 (375)
-+|.+|++|.++. .|+..++. -+.. +.. ..+..+...|+.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 4788999999997 57766653 3333 333 788888877754
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.55 E-value=0.0088 Score=57.32 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 54 ~~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+++...+.|.||+|+|||+|+++|+..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 366677789999999999999999999987
No 287
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.54 E-value=0.0059 Score=62.60 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCc-cccC-----------CCCChHHHHHHHHHHHHHHHHhCCc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKM 123 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~-l~s~-----------~~Ge~~~~ir~~F~~A~~~~~~~~p 123 (375)
.+.+++|.||+|+|||++.++++..+.- ..+.+.... +.-. .++...-.+....+.+ -...|
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~----LR~~P 334 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA----LRQRP 334 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT----GGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh----hccCC
Confidence 4557999999999999999999988643 445544332 2100 0111111122333333 46789
Q ss_pred eeeeeccc
Q 017204 124 CCLMINDL 131 (375)
Q Consensus 124 ~IL~iDEi 131 (375)
.+++++|+
T Consensus 335 D~iivgEi 342 (511)
T 2oap_1 335 DYIIVGEV 342 (511)
T ss_dssp SEEEESCC
T ss_pred CeEEeCCc
Confidence 99999997
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.54 E-value=0.0043 Score=56.01 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=18.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHH-HHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVF-AKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA-~el 83 (375)
.++....+.|.||+|+|||++++.++ ..+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34455678999999999999999999 765
No 289
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.52 E-value=0.0035 Score=57.93 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.++-|.|.|++|+|||++++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999983
No 290
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.45 E-value=0.013 Score=58.54 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=40.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCc--eEEeccCccccCCCCC----hHHHHHHHHHHHHHHHHhCCceeeeeccc
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGE----PAKLIRQRYREAADIIKKGKMCCLMINDL 131 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~--~i~vs~s~l~s~~~Ge----~~~~ir~~F~~A~~~~~~~~p~IL~iDEi 131 (375)
..++|.||+|+|||++.++++..+... -+.+....+.....+. -...+.-.|..+...+-...|.++++.|+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 457899999999999999999987532 2222222221100000 00011123333322224567999999985
No 291
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.45 E-value=0.021 Score=51.26 Aligned_cols=37 Identities=19% Similarity=-0.028 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCchHH-HHHHHHHHH--hCCceEEeccC
Q 017204 57 KVPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG 93 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT-~LA~aIA~e--lg~~~i~vs~s 93 (375)
...+..++|||.|+||| .|.+++.+. .+..++.+++.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 34567889999999999 888888776 45677777643
No 292
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.43 E-value=0.0084 Score=53.17 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEeccCc
Q 017204 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 94 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~ 94 (375)
+|++|++|+|||++|+.++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 87777776654
No 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.40 E-value=0.019 Score=63.70 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.+.|+||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 294
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.0099 Score=53.98 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+....+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556788999999999999999999864
No 295
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.40 E-value=0.014 Score=51.48 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEe
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 90 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~v 90 (375)
.+.++++||||+|||+++..++..+ |...+.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999996666553 5555444
No 296
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.39 E-value=0.021 Score=55.97 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
++.|..++|.||+|+|||++++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567789999999999999999999875
No 297
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.35 E-value=0.024 Score=51.88 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++-|.|.||+|+|||++++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999999997
No 298
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.34 E-value=0.072 Score=58.40 Aligned_cols=23 Identities=22% Similarity=-0.002 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
...++|.||.|+|||++.+.++-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999843
No 299
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.28 E-value=0.032 Score=50.64 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.++-|.|.|++|+|||++++.+++.++.....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 35678899999999999999999999874333
No 300
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.25 E-value=0.088 Score=56.77 Aligned_cols=25 Identities=24% Similarity=-0.003 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
....++|.||.|+|||++.+.|+.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3457899999999999999998864
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.21 E-value=0.024 Score=54.76 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+.|..+.|.||+|+|||++++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999875
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.16 E-value=0.011 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+.|.||+|+|||+|++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999986
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.14 E-value=0.014 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
....+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998874
No 304
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.13 E-value=0.015 Score=51.50 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+|+||.|++|+|||++|.++... |..++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 469999999999999999999874 554443
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.12 E-value=0.015 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+..+.|.||+|+|||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 306
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.03 E-value=0.034 Score=56.80 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+..+..++|.||+|+|||+|++.||..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35567789999999999999999999875
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.02 E-value=0.016 Score=50.82 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.+.+.|.|++|+|||+++..++..+ |..+..++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4578899999999999999999875 45544444
No 308
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.96 E-value=0.018 Score=52.17 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCceEEec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs 91 (375)
-.|.|+|..|||||++++.+++ +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4689999999999999999987 898877744
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.92 E-value=0.016 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg 84 (375)
..+|+||.|+|||++.++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998876
No 310
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.88 E-value=0.029 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|+|.|.||+|||+|..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4567999999999999999998765
No 311
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.84 E-value=0.015 Score=60.34 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
...++|+||||||||+++.+++..+ |..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3578999999999999999988754 555555443
No 312
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.83 E-value=0.039 Score=53.03 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.+.|+.+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3567889999999999999999998875 44444443
No 313
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.82 E-value=0.064 Score=55.47 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+++...+.|.||+|+|||+|++.++....
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 445566789999999999999999998753
No 314
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.81 E-value=0.036 Score=57.27 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++.+..+.|.|++|+|||+++++|+..++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345567799999999999999999999985
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.018 Score=54.76 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh----CCceEEecc
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 92 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~ 92 (375)
..+..++|.||+|+|||+++..+|..+ |..+..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356789999999999999999998764 445555543
No 316
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.77 E-value=0.02 Score=51.81 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC---CceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg---~~~i~vs 91 (375)
.++-|.|.|++|+|||++++.+++.+. .+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 356788999999999999999999874 4554443
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.74 E-value=0.059 Score=51.98 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+.....+.|.||||+|||+|.++++..+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34556678999999999999999999764
No 318
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.61 E-value=0.015 Score=53.33 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|+|||+|.+.|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556679999999999999999998764
No 319
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.61 E-value=0.068 Score=57.36 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..++|.||.|+|||++.+.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999998864
No 320
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=94.60 E-value=0.0096 Score=45.54 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=19.3
Q ss_pred HHHHHhhhhhcCCC----CCCHHHHHHHhcCCChhhHHHH
Q 017204 211 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 246 (375)
Q Consensus 211 ~~R~~Il~~~l~~~----~v~~~~la~lt~gf~gadl~~~ 246 (375)
++|.+|++.++.+. +++.+.|++.|+||||+||..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l 40 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 40 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 46889998888653 6778889999999999999643
No 321
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.58 E-value=0.063 Score=54.03 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
....+..++.|+||||||++...++..
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345578899999999999999887753
No 322
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.56 E-value=0.018 Score=53.01 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++. ..+.|.||+|+|||+|.++++.-..
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4556 7889999999999999999998653
No 323
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.53 E-value=0.016 Score=53.04 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+.....+.|.||.|+|||+|.+.++....
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345556789999999999999999987653
No 324
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.52 E-value=0.088 Score=52.64 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.|..+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 57889999999999999999999875 34444443
No 325
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.48 E-value=0.013 Score=53.17 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.++.-..
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344555789999999999999999987653
No 326
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.39 E-value=0.018 Score=53.61 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG 93 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s 93 (375)
.++....+.|.||.|+|||+|.++|+.-+.. .-+.+.+.
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~ 68 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 68 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 4455567899999999999999999876542 23444443
No 327
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.38 E-value=0.022 Score=51.41 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
+..|++.|+|+|.||+||+++|+.+.+.+|.
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 3457789999999999999999999887864
No 328
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.36 E-value=0.02 Score=59.84 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999887776654
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.31 E-value=0.019 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||.|+|||+|.++|+..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556679999999999999999998764
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.30 E-value=0.027 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++-|.|.|++|+|||++++.+++.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998863
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.26 E-value=0.02 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.+.|.||+|+|||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998863
No 332
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.26 E-value=0.024 Score=52.93 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.++....+.|.||.|+|||+|.+.|+..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455567999999999999999999975
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.23 E-value=0.031 Score=54.21 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCCC--CcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 55 NIKV--PLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 55 ~~~~--p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
.+.. ..-+.|.||+|+|||+|++.++..+...
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4444 5678999999999999999999987643
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.15 E-value=0.022 Score=53.03 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||.|+|||+|.++|+..+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44555679999999999999999998764
No 335
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.14 E-value=0.022 Score=53.20 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG 93 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s 93 (375)
.++....+.|.||.|+|||+|.+.|+..+.- .-+.+.+.
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 86 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI 86 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCE
Confidence 4455567899999999999999999876542 23444443
No 336
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.14 E-value=0.034 Score=50.74 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
..++-|.|.|++|+|||++++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35677889999999999999999998654
No 337
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.14 E-value=0.13 Score=49.49 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
......+.|.|+||+|||+++..++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456778899999999999999998764
No 338
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.13 E-value=0.022 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.++....+.|.||.|+|||+|.+.++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445567899999999999999999974
No 339
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.11 E-value=0.024 Score=55.58 Aligned_cols=29 Identities=24% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.++||.-.
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34445568899999999999999999874
No 340
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.11 E-value=0.025 Score=55.18 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34455678899999999999999999864
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.08 E-value=0.023 Score=53.27 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||+|+|||+|.+.|+..+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445556799999999999999999988753
No 342
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.07 E-value=0.25 Score=54.69 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA 80 (375)
...++|.||.|+|||++.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999984
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.03 E-value=0.02 Score=53.12 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.++.-+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344556789999999999999999987653
No 344
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.03 E-value=0.08 Score=48.89 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.02 E-value=0.021 Score=52.06 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.++++..+.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344556789999999999999999998753
No 346
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.01 E-value=0.029 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-++|.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999875
No 347
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.99 E-value=0.021 Score=52.79 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||+|+|||+|.+.|+.-+.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344556789999999999999999988653
No 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.99 E-value=0.028 Score=55.06 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||+|||||+|.+.||.-..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 344555788999999999999999998753
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.98 E-value=0.028 Score=55.04 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34455678899999999999999999864
No 350
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.97 E-value=0.022 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
....+.|.||.|+|||+|.++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999975
No 351
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.97 E-value=0.021 Score=52.41 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.|+..+.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344555789999999999999999987653
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.95 E-value=0.028 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.-+.|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998864
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.94 E-value=0.033 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e 82 (375)
-|++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.93 E-value=0.05 Score=61.79 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++..-+.|.||+|+|||+|++++..-.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 44555678999999999999999998764
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.93 E-value=0.029 Score=55.35 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34455678899999999999999999875
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.92 E-value=0.03 Score=55.12 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34455678899999999999999999864
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.91 E-value=0.058 Score=54.03 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh---CCceEEecc
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 92 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~ 92 (375)
.|..|++.|+||+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999999999875 455565554
No 358
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.039 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
...-|+|.|++|+|||+|..+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998864
No 359
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.91 E-value=0.02 Score=51.86 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
++....+.|.||.|+|||+|.++++..+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34455688999999999999999987653
No 360
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.91 E-value=0.026 Score=52.45 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.++..+.
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345556789999999999999999987653
No 361
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.88 E-value=0.026 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||.|+|||+|.+.|+.-+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44555678999999999999999998764
No 362
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.85 E-value=0.023 Score=53.50 Aligned_cols=30 Identities=33% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.++++.-+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344556789999999999999999987653
No 363
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.80 E-value=0.13 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+..|. +.|.||+|+|||+|.++|+..
T Consensus 42 ~l~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 42 DLALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp SCCCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred cccCCe-EEEECCCCChHHHHHHHHhCC
Confidence 456665 889999999999999999875
No 364
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.80 E-value=0.025 Score=55.23 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455678899999999999999999864
No 365
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.80 E-value=0.035 Score=46.04 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|++++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999875
No 366
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.78 E-value=0.024 Score=53.02 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEeccCc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE 94 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs~s~ 94 (375)
.++....+.|.||.|+|||+|.++++.-+.- .-+.+.+.+
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3445567899999999999999999976532 234444433
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.77 E-value=0.027 Score=55.03 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455578899999999999999999864
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.045 Score=46.95 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
....-|++.|++|+|||+|..++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 369
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.76 E-value=0.024 Score=52.45 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.++..+.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344555789999999999999999987653
No 370
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.75 E-value=0.035 Score=57.88 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+-++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999988776554
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.73 E-value=0.029 Score=57.31 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
++.....++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67777789999999999999999998764
No 372
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.69 E-value=0.025 Score=52.38 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||.|+|||+|.+.++..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455678999999999999999999865
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.66 E-value=0.039 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|+||+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 374
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.65 E-value=0.076 Score=48.19 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHh--CCceEEec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 91 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~el--g~~~i~vs 91 (375)
+.+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345678899999999999999999776 55555544
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.64 E-value=0.029 Score=55.09 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|||||+|.+.||.-.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34445578899999999999999999874
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.62 E-value=0.026 Score=53.11 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.++....+.|.||.|+|||+|.+.|+..+.
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344555789999999999999999997653
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.59 E-value=0.037 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 378
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.57 E-value=0.045 Score=49.43 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
++-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999986
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.52 E-value=0.045 Score=49.38 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.+..+.|.||.|+|||++++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345667889999999999999999987
No 380
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.49 E-value=0.042 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999865
No 381
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.44 E-value=0.044 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|++.|++|+|||+|.+++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.42 E-value=0.034 Score=47.76 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~ 81 (375)
-|+|.|+||+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999976
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.42 E-value=0.058 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.+.-|++.|++|+|||+|..++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 384
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.40 E-value=0.045 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.-|++.|++|+|||+|.+++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 385
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.40 E-value=0.2 Score=49.80 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
-++|.||||+|||+|+..|++..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999888863
No 386
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.39 E-value=0.038 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999888776654
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.39 E-value=0.045 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..+.-|+|.|++|+|||+|.+++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34467899999999999999999874
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.37 E-value=0.046 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|.+.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 389
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.37 E-value=0.043 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998754
No 390
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.35 E-value=0.038 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.++....+.|.||+|||||+|.+.|+.-
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 4555667999999999999999999974
No 391
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.34 E-value=0.043 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-+.|.|+||+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 392
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.32 E-value=0.045 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+.|.||+|+|||+|.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998753
No 393
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.31 E-value=0.047 Score=45.42 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|++.|++|+|||+|.+++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.29 E-value=0.048 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|++.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998875
No 395
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.28 E-value=0.15 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|+|.|+||+|||+|...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999865
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.054 Score=47.76 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
...++|.|++|+|||+|+..++..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 357889999999999999999988643
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.26 E-value=0.045 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 398
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.25 E-value=0.15 Score=57.82 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+++...+.|.||+|+|||+|+++++....
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455666799999999999999999988753
No 399
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.19 E-value=0.064 Score=45.06 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|++.|++|+|||+|.+++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999753
No 400
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.18 E-value=0.051 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.12 E-value=0.056 Score=44.79 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e 82 (375)
-|++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999865
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.10 E-value=0.041 Score=51.38 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++ ...+.|.||.|+|||+|.+.++..+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 5568899999999999999998765
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.063 Score=46.38 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
....-|+|.|++|+|||+|.+.+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999875
No 404
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.051 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999863
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.06 E-value=0.054 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999874
No 406
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.05 E-value=0.04 Score=52.23 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||.|+|||+|.+.|+..+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34455678999999999999999998764
No 407
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.02 E-value=0.052 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~ 81 (375)
-|++.|+||+|||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 408
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.98 E-value=0.041 Score=52.61 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
.+++...+.|.||+|+|||+|+++|+..+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 455566799999999999999999988653
No 409
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.97 E-value=0.069 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 410
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.93 E-value=0.05 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|++.|+||+|||+|.+.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.90 E-value=0.054 Score=45.40 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 412
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.90 E-value=0.032 Score=54.33 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHhCC--ceEEec
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS 91 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~elg~--~~i~vs 91 (375)
+....++|.||+|+|||+|+++++..... ..+.+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 34456999999999999999999988642 344444
No 413
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.88 E-value=0.048 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~ 81 (375)
-|+|.|+||+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 488999999999999998853
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.86 E-value=0.06 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|.+.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999875
No 415
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.84 E-value=0.056 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-++|.|++|+|||+|.+.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 416
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.81 E-value=0.055 Score=49.99 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHhCCce
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKMGINP 87 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~elg~~~ 87 (375)
+.|.|+|++|+|||++++.+...+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3588999999999999999999888653
No 417
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.80 E-value=0.062 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|++.|++|+|||+|..++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 418
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.80 E-value=0.12 Score=46.29 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh--CCceEEec
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 91 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el--g~~~i~vs 91 (375)
+-|.|-|+.|+|||++++.+++.+ |..++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 457788999999999999999998 44555443
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.78 E-value=0.03 Score=48.85 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+....-+.|.|++|+|||+|.++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445567899999999999999988643
No 420
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.78 E-value=0.16 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.75 E-value=0.063 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999875
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.72 E-value=0.18 Score=46.45 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|+|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999763
No 423
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.055 Score=58.38 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh----CCceEEeccC
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 93 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el----g~~~i~vs~s 93 (375)
..+++||||||||+++..+...+ +..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999877665443 4455555544
No 424
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.71 E-value=0.075 Score=46.99 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMG 84 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg 84 (375)
+.-++|.|++|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45677779999999999999998863
No 425
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.71 E-value=0.063 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.70 E-value=0.065 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|.+++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999865
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.67 E-value=0.059 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|++.|++|+|||+|.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 428
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.67 E-value=0.058 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|.+++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998653
No 429
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.67 E-value=0.062 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999876
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.62 E-value=0.1 Score=52.37 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
.+.....+.|.||+|||||+|.+.|+......
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34455578999999999999999999997654
No 431
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.60 E-value=0.075 Score=51.08 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+|+||.|++|+|||++|.++... |..++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 479999999999999999999775 655443
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.59 E-value=0.067 Score=45.93 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 433
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.59 E-value=0.062 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|.+++...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 434
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.57 E-value=0.062 Score=46.00 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEEEcCCCchHHHHHHHHH
Q 017204 53 LPNIKVPLILGIWGGKGQGKSFQCELVF 80 (375)
Q Consensus 53 ~~~~~~p~glLL~GPPGtGKT~LA~aIA 80 (375)
..+.+.+.-|++.|++|+|||+|..++.
T Consensus 16 ~f~~~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 16 LLPADRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCTTSCEEEEEEEETTSSHHHHHHHTC
T ss_pred hccCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3343556779999999999999999885
No 435
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.062 Score=54.27 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
++....++|.||.|+|||+|++.|+...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3445568999999999999999999864
No 436
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.56 E-value=0.065 Score=52.60 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++....+.|.||+|+|||+|.++|+.-.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44555678999999999999999999864
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.52 E-value=0.077 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
...+|+||.|+|||++..||.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998765
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.51 E-value=0.07 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-+.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999875
No 439
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.50 E-value=0.069 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987776554
No 440
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.48 E-value=0.19 Score=46.37 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e 82 (375)
-|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999765
No 441
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.48 E-value=0.072 Score=51.16 Aligned_cols=30 Identities=17% Similarity=-0.061 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCCceEE
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 89 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~~~i~ 89 (375)
.+|+||.|++|+|||++|..+.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 47999999999999999998765 5665554
No 442
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.45 E-value=0.27 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..|.|.|.||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.43 E-value=0.073 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.40 E-value=0.074 Score=44.91 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 445
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.40 E-value=0.069 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..-|+|.|+||+|||+|.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999887654
No 446
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.37 E-value=0.098 Score=50.78 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHhCCc
Q 017204 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 86 (375)
Q Consensus 56 ~~~p~glLL~GPPGtGKT~LA~aIA~elg~~ 86 (375)
+.....+.|.||+|+|||+|.+.|+......
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3445568999999999999999999997654
No 447
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.076 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|+|.|++|+|||+|..++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999865
No 448
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.29 E-value=0.077 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|+|.|++|+|||+|.+++...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999875
No 449
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.27 E-value=0.45 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 55 NIKVPLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 55 ~~~~p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
.+++...+.|.||+|+|||+|+++++...
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34455678999999999999999999864
No 450
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.26 E-value=0.078 Score=45.42 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|..++...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999875
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.26 E-value=0.097 Score=44.08 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|.+.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998864
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.14 E-value=0.083 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|+|.|++|+|||+|.+.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999998865
No 453
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.14 E-value=0.069 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 454
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.10 E-value=0.081 Score=45.46 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..-|+|.|++|+|||+|.+.+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.08 E-value=0.068 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e 82 (375)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.086 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|+|.|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999875
No 457
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.03 E-value=0.086 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|+||+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 458
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.02 E-value=0.086 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFA 81 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~ 81 (375)
+.+.-|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988863
No 459
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.01 E-value=0.086 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|..++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 460
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.01 E-value=0.089 Score=45.04 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|++.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998754
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.99 E-value=0.1 Score=45.28 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+...-|+|.|++|+|||+|...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999764
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.98 E-value=0.09 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 463
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.089 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|+|.|++|+|||+|.+.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999888765
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.96 E-value=0.096 Score=44.55 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.+.-|++.|++|+|||+|.+.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 465
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.96 E-value=0.15 Score=45.12 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEeccC
Q 017204 62 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 93 (375)
Q Consensus 62 lLL~GPPGtGKT~LA~aIA~el---g~~~i~vs~s 93 (375)
|.|-|+-|+||||+++.+++.+ |.+++.+.-+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 5678999999999999999886 6666665433
No 466
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.083 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|...+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999865
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.95 E-value=0.15 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 017204 61 ILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~el 83 (375)
.++|.|+.|+|||++.+.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999764
No 468
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.91 E-value=0.085 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|+|.|++|+|||+|.+.+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 469
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.90 E-value=0.092 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999875
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.87 E-value=0.092 Score=45.07 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|.+.+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999865
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.87 E-value=0.092 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|.+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 472
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.86 E-value=0.19 Score=44.62 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh---CCceEEec
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 91 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el---g~~~i~vs 91 (375)
.+..+++||+|+|||+.+-.++..+ |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678899999999999888877774 66666553
No 473
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.86 E-value=0.075 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|+|.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999765
No 474
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.81 E-value=0.094 Score=45.09 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 475
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=91.76 E-value=0.14 Score=49.44 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=54.6
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
..+.|.||.+++..--...+.+.++.+++...+. |. --.|+-||..|+|||+... |- .-...
T Consensus 42 ~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTm~------G~--------~~~~~ 103 (325)
T 1bg2_A 42 ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE--GY--NGTIFAYGQTSSGKTHTME------GK--------LHDPE 103 (325)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT--TC--CEEEEEECSTTSSHHHHHT------BS--------TTCTT
T ss_pred CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhC--CC--eEEEEEECCCCCCCceEec------cc--------CCCcc
Confidence 3578999999987766666777777777777774 33 2368999999999997752 21 00112
Q ss_pred CCCChHHHHHHHHHHH
Q 017204 99 NAGEPAKLIRQRYREA 114 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A 114 (375)
..|--.+.++.+|...
T Consensus 104 ~~Giipr~~~~lF~~i 119 (325)
T 1bg2_A 104 GMGIIPRIVQDIFNYI 119 (325)
T ss_dssp TBCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHH
Confidence 3455678888899876
No 476
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.67 E-value=0.093 Score=45.39 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 477
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=91.62 E-value=0.15 Score=49.85 Aligned_cols=79 Identities=15% Similarity=0.318 Sum_probs=54.2
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccc-
Q 017204 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE- 96 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~- 96 (375)
...+.|.||.+++..--...+.+..+.+++...+. |. .-.|+-||..|+|||+.. .|-. ..
T Consensus 44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTm------~G~~--------~~~ 105 (355)
T 1goj_A 44 EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILN--GY--NGTVFAYGQTGAGKSYTM------MGTS--------IDD 105 (355)
T ss_dssp TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTT--TC--CEEEEEECSTTSSHHHHH------TBSC--------TTS
T ss_pred CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhC--CC--cceEEEECCCCCCcceEe------ecCC--------CCC
Confidence 34578999999987766666667777777777764 43 236899999999999765 2211 11
Q ss_pred cCCCCChHHHHHHHHHHH
Q 017204 97 SGNAGEPAKLIRQRYREA 114 (375)
Q Consensus 97 s~~~Ge~~~~ir~~F~~A 114 (375)
....|--.+.++.+|...
T Consensus 106 ~~~~Giipr~~~~lF~~i 123 (355)
T 1goj_A 106 PDGRGVIPRIVEQIFTSI 123 (355)
T ss_dssp TTTBCHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHH
Confidence 123455567888888876
No 478
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.60 E-value=0.12 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHh
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~el 83 (375)
...+.|.|+||+|||+|.++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999864
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.56 E-value=0.095 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.55 E-value=0.096 Score=45.48 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|.+++...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 481
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.54 E-value=0.23 Score=50.68 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHH-HHHHHHHhCCceE
Q 017204 61 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 88 (375)
Q Consensus 61 glLL~GPPGtGKT~L-A~aIA~elg~~~i 88 (375)
-++|.|++|+|||.| ...|++..+..++
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 489999999999999 5799999877654
No 482
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.51 E-value=0.14 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
+.+++.+|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988877654
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.14 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999874
No 484
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=91.45 E-value=0.17 Score=49.73 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=55.8
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
...+.|.||.+++..--...+.+.++.+++...+.-.+ ..|+-||..|+|||+.. .|-.-.....+.-..
T Consensus 64 ~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n----~tifAYGqTGSGKTyTm------~G~~~~~~~~~~~~~ 133 (373)
T 2wbe_C 64 KLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYN----CTVFAYGQTGTGKTHTM------VGNETAELKSSWEDD 133 (373)
T ss_dssp TTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCC----EEEEEECSTTSSHHHHH------TBSCSCCSSSCSSCT
T ss_pred CCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCce----EEEEeecCCCCCcceec------ccCcccccccccccc
Confidence 34678999999887766666667777777777775333 36899999999999764 222110000000112
Q ss_pred CCCCChHHHHHHHHHHH
Q 017204 98 GNAGEPAKLIRQRYREA 114 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A 114 (375)
...|--.+.++.+|...
T Consensus 134 ~~~Giipr~~~~lF~~i 150 (373)
T 2wbe_C 134 SDIGIIPRALSHLFDEL 150 (373)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHH
Confidence 23455678888889876
No 485
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=91.45 E-value=0.14 Score=49.87 Aligned_cols=76 Identities=14% Similarity=0.315 Sum_probs=54.1
Q ss_pred cccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCcccc
Q 017204 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s 97 (375)
.+.+.|.||.+++...-...+.+.++.+++...+. |. .-.|+-||..|+|||+... |- .
T Consensus 41 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTM~------G~-----------~ 99 (349)
T 1t5c_A 41 DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ--GY--NGTIFAYGQTASGKTYTMM------GS-----------E 99 (349)
T ss_dssp TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHHT------BC-----------S
T ss_pred CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc--CC--ccceeeecCCCCCCCeEEe------cC-----------C
Confidence 34678999999987776666777777777777774 33 2368999999999997652 21 1
Q ss_pred CCCCChHHHHHHHHHHH
Q 017204 98 GNAGEPAKLIRQRYREA 114 (375)
Q Consensus 98 ~~~Ge~~~~ir~~F~~A 114 (375)
...|--.+.++.+|...
T Consensus 100 ~~~Giipr~~~~lF~~i 116 (349)
T 1t5c_A 100 DHLGVIPRAIHDIFQKI 116 (349)
T ss_dssp SSBCHHHHHHHHHHHHG
T ss_pred CCCchHHHHHHHHHHHH
Confidence 23455567788888765
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.44 E-value=0.12 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
....-|+|.|++|+|||+|..++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34467899999999999999999865
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.41 E-value=0.11 Score=46.24 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAKMGI 85 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~elg~ 85 (375)
|...+|+||.|+|||++..||.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 346789999999999999999887764
No 488
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.38 E-value=0.64 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 017204 61 ILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 61 glLL~GPPGtGKT~LA~aIA~e 82 (375)
-|+|.|.||+|||+|...+...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999998654
No 489
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=91.37 E-value=0.16 Score=49.36 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=54.7
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
..+.|.||.+++..--...+.+.++.+++...+. |. --.|+-||..|+|||+.. .|... ......
T Consensus 48 ~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTm------~G~~~-----~~~~~~ 112 (344)
T 4a14_A 48 RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE--GF--NATVFAYGQTGSGKTYTM------GEASV-----ASLLED 112 (344)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT--TC--CEEEEEESSTTSSHHHHH------CC-------------C
T ss_pred ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh--hc--CeeEEEecccCCCceEee------cccch-----hhhhhc
Confidence 4578999999887766666777777777777774 33 236899999999999875 22111 011223
Q ss_pred CCCChHHHHHHHHHHH
Q 017204 99 NAGEPAKLIRQRYREA 114 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A 114 (375)
..|--.+.++.+|...
T Consensus 113 ~~Giipr~~~~lF~~i 128 (344)
T 4a14_A 113 EQGIVPRAMAEAFKLI 128 (344)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHhc
Confidence 4566678888999876
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.36 E-value=0.1 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|.+.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 491
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.36 E-value=0.12 Score=44.08 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 57 KVPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 57 ~~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+...-|++.|++|+|||+|.+.+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999853
No 492
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.32 E-value=0.096 Score=52.43 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCCCCcE--EEEEcCCCchHHHHHHHHHHH
Q 017204 55 NIKVPLI--LGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 55 ~~~~p~g--lLL~GPPGtGKT~LA~aIA~e 82 (375)
.++.... +.|.||+|+|||+|.++|+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3445555 889999999999999999875
No 493
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.27 E-value=0.12 Score=45.03 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999875
No 494
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.27 E-value=0.12 Score=44.25 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|++.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999998764
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.25 E-value=0.067 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHH
Q 017204 58 VPLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 58 ~p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
...-|+|.|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999988754
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.20 E-value=0.12 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHh
Q 017204 60 LILGIWGGKGQGKSFQCELVFAKM 83 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~el 83 (375)
..+.|.||||+|||+|.++++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468899999999999999998654
No 497
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.11 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 017204 60 LILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 60 ~glLL~GPPGtGKT~LA~aIA~e 82 (375)
.-|++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 498
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=91.13 E-value=0.17 Score=49.57 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=54.2
Q ss_pred ccccccccccccccCCchhHHHHHHHHHHHhhhhCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCceEEeccCccccC
Q 017204 19 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~k~~l~~~~~~~p~glLL~GPPGtGKT~LA~aIA~elg~~~i~vs~s~l~s~ 98 (375)
..+.|.||.+++..--...+.+.++.+++...+. |. ...|+-||..|+|||+... |.. -...
T Consensus 49 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTm~------G~~--------~~~~ 110 (365)
T 2y65_A 49 AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLA--GY--NGTIFAYGQTSSGKTHTME------GVI--------GDSV 110 (365)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT--TC--CEEEEEECSTTSSHHHHHT------BST--------TCTT
T ss_pred CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhC--CC--ceEEEeecCCCCCCceEEe------cCC--------CCcc
Confidence 4578999999987766666777777777777774 33 2368999999999998751 210 0112
Q ss_pred CCCChHHHHHHHHHHH
Q 017204 99 NAGEPAKLIRQRYREA 114 (375)
Q Consensus 99 ~~Ge~~~~ir~~F~~A 114 (375)
..|--.+.++.+|...
T Consensus 111 ~~Giipr~~~~lF~~i 126 (365)
T 2y65_A 111 KQGIIPRIVNDIFNHI 126 (365)
T ss_dssp TBCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
Confidence 3355567888888876
No 499
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.12 E-value=0.11 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
..-|+|.|++|+|||+|.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998865
No 500
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.11 E-value=0.11 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 017204 59 PLILGIWGGKGQGKSFQCELVFAK 82 (375)
Q Consensus 59 p~glLL~GPPGtGKT~LA~aIA~e 82 (375)
+.-|+|.|++|+|||+|..++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999865
Done!