RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017205
(375 letters)
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 761 bits (1967), Expect = 0.0
Identities = 323/375 (86%), Positives = 342/375 (91%), Gaps = 1/375 (0%)
Query: 1 MRSPGQLKSSSSELDLDGPNIEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDD 60
R +L S SELDLD PNIEDYLPSGSSIQEP GKL LRDLLDIS LTEAA AIVDD
Sbjct: 3 DRDSEELLRSRSELDLDRPNIEDYLPSGSSIQEPSGKLLLRDLLDISGVLTEAASAIVDD 62
Query: 61 SFTRCFKSNQPEPWNWNIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSL 120
SFTRCFKSN PEPWNWNIYLFPLWC GVV RY ILFP+RV++L IGWIIFLS+FIPVH L
Sbjct: 63 SFTRCFKSNPPEPWNWNIYLFPLWCVGVVIRYGILFPVRVLLLAIGWIIFLSAFIPVHFL 122
Query: 121 LKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILE 180
LKGH KLRKK+ER LVELICS FVASWTGV+KYHGPRPS RPKQVFVANHTSMIDFI+LE
Sbjct: 123 LKGH-KLRKKIERKLVELICSAFVASWTGVIKYHGPRPSRRPKQVFVANHTSMIDFIVLE 181
Query: 181 QMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLL 240
QMT FAVIMQKHPGWVG LQ+TILESVGCIWFNR+EAKDRE+VA+KLRDHVQ D NPLL
Sbjct: 182 QMTPFAVIMQKHPGWVGFLQNTILESVGCIWFNRTEAKDREVVAKKLRDHVQDPDRNPLL 241
Query: 241 IFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTS 300
IFPEGTCVNN YTVMFKKGAFELGCTVCP+AIKYNKIFVDAFWNSRKQSFTMHLL+LMTS
Sbjct: 242 IFPEGTCVNNEYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTS 301
Query: 301 WAVVCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKVPWDGYLKYSRPSPKHRERK 360
WAVVCDVWYLEPQTLRPGET IEFAERVRD+I+ RAGLKKVPWDGYLKY RPSPKH E+K
Sbjct: 302 WAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKKVPWDGYLKYYRPSPKHTEKK 361
Query: 361 QQSFAESVLRRLDEK 375
QQSFAES+LRRL+EK
Sbjct: 362 QQSFAESLLRRLEEK 376
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 281 bits (721), Expect = 8e-95
Identities = 86/212 (40%), Positives = 117/212 (55%), Gaps = 2/212 (0%)
Query: 139 ICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGL 198
A V+K HG ++ VANHTS ID +IL +++ +K G +
Sbjct: 1 ARVLLFAFGFYVIKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLFPSIVAKKELGKLPF 60
Query: 199 LQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKK 258
+ TIL ++GCI+ +RSE KDR+ V ++++ + P+LIFPEGT N +MFKK
Sbjct: 61 IG-TILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGTTTNGKALIMFKK 119
Query: 259 GAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTL-RP 317
GAFE G V PVAI+Y FVDAFWNS S M+L +L+T A V +V +L T
Sbjct: 120 GAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYTPSEE 179
Query: 318 GETAIEFAERVRDIISVRAGLKKVPWDGYLKY 349
GE EFA RVR I++ + GL W G K
Sbjct: 180 GEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 90.8 bits (226), Expect = 3e-22
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 151 VKYHGPRPSMRPKQ-VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTIL 204
V+ HG R + VANH S +D ++L ++ + + + L ++
Sbjct: 2 VRVHGLENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPL-LGWLM 60
Query: 205 ESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL- 263
+GCI+ +R AKD L + ++ + +LIFPEGT + FKKGAF L
Sbjct: 61 RLLGCIFIDRKNAKDAANTLEYLVELLR--EGELVLIFPEGTRSRGGELLPFKKGAFRLA 118
Query: 264 ---GCTVCPVAIK 273
G + PVAI
Sbjct: 119 REAGVPIVPVAIS 131
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 80.1 bits (198), Expect = 2e-18
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 165 VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKD 219
+ VANH S +D ++L ++ + +K +V LL +L +G I+ +RS
Sbjct: 2 LVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLL-GWLLRLLGAIFIDRSN--- 57
Query: 220 REIVARKLRDHVQGTDNN-PLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIKY 274
LR+ V+ LLIFPEGT + FKKGA L G + PVAI+
Sbjct: 58 GRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 64.6 bits (158), Expect = 3e-12
Identities = 43/204 (21%), Positives = 73/204 (35%), Gaps = 37/204 (18%)
Query: 143 FVASWTGV-VKYHGPRPSMRPKQ-VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVG--- 197
+ GV V+ G + VANH S +D ++L + + +V
Sbjct: 3 LLLRLLGVRVRVEGLENLPPKGPVIIVANHQSYLDPLVL------GAALPRPIRFVAKKE 56
Query: 198 LLQ----STILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYT 253
L + +L +G I +R + R+ + ++ + ++IFPEGT +
Sbjct: 57 LFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALK--EGESVVIFPEGT-RSRDGE 113
Query: 254 VM-FKKGAFEL----GCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVW 308
++ FK GAF L G + PVAI K+ V
Sbjct: 114 LLPFKSGAFRLAKEAGVPIVPVAISGT----WGSLPKGKKLP----------RPGRVTVR 159
Query: 309 YLEPQTLRPGETAIEFAERVRDII 332
EP E A E + +R+ +
Sbjct: 160 IGEPIPPEGLELAEEDRKELREKV 183
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 57.2 bits (138), Expect = 2e-09
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 98 LRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPR 157
LR+ +L I I+FL +P+ + R L R L L+ + V + G
Sbjct: 1 LRLALLLILVILFLLLPLPLALIALFR-LRRPVLRRWLRFLVLLLLLLFGLRV-EVEGLE 58
Query: 158 PSMRPKQ-VFVANHTSMIDFIILE------QMTAFAV--IMQKHPGWVGLLQSTILESVG 208
+ + VANH S +D ++L F + K P +G L L +G
Sbjct: 59 NLPKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVP-LLGWL----LRLLG 113
Query: 209 CIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FKKGAF----EL 263
I E D E + + G + L+IFPEGT ++ FK+GA E
Sbjct: 114 AI-PVDRENPDDETLRAAVARLKAGGRS--LVIFPEGTRSRGGEELLPFKRGAARLALEA 170
Query: 264 GCTVCPVAIKY 274
G + PVAI
Sbjct: 171 GVPIVPVAIVG 181
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 45.4 bits (108), Expect = 4e-06
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 165 VFVANHTSMIDFIILEQMTA--FAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREI 222
+ VANH S +D + L I +K W+ + + G I+ +R +
Sbjct: 19 LVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLT-GAIFIDRENIRAIAT 77
Query: 223 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAI 272
+ + ++ + +FPEGT + FKKGAF + G + PV +
Sbjct: 78 ALKAAIEVLK--QGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGVPILPVVL 129
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 45.9 bits (109), Expect = 8e-06
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 138 LICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMT-------AFAVIMQ 190
+ F VK P P P +FV+NH+S D +IL + + ++ +
Sbjct: 3 YLLLNFFGFVRLEVKGPPPPPGGGPV-LFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE 61
Query: 191 KHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVN- 249
+ SV RS AK + VAR L + + IFPEGT
Sbjct: 62 ELLERYPFFTRLGAFSVDRDS-PRSAAKSLKYVARLLSKP-----GSVVWIFPEGTRTRR 115
Query: 250 NHYTVMFKKGAFELGC----TVCPVAIKYNKIFVDAF 282
+ + FK G L + PVA++Y + F
Sbjct: 116 DKRPLQFKPGVAHLAEKAGVPIVPVALRYTFELFEQF 152
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 39.9 bits (94), Expect = 8e-04
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 141 SFFVASWTGV-VKYHGPRPSMRP-KQVFVANHTSMIDFIILEQMTAFA--------VIMQ 190
F +GV V +G P + + + ++NH S +D+++L M A ++++
Sbjct: 1 VFLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVL-WMLADRFGRLGRLKIVLK 59
Query: 191 KHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGT 246
+ L I+ R KD + + R+L+ + LLIFPEGT
Sbjct: 60 DSLKYPPLGGWGWQLG-EFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 35.5 bits (82), Expect = 0.025
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 158 PSMRPKQVFVANHTSMIDFIILEQM-TAFAVIMQKH----P--GWVGLLQSTILESVGCI 210
PS V+V+NH S +D L + F I + P GW + G I
Sbjct: 46 PSPDEPAVYVSNHQSFLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYM-------TGHI 98
Query: 211 WFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCT 266
R + + + ++ + ++ + FPEGT + FKKGAF + G
Sbjct: 99 PLKRMDRRSQLECLKRCMELLK--KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVP 156
Query: 267 VCPVAI 272
V P+ +
Sbjct: 157 VVPITL 162
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 33.7 bits (78), Expect = 0.074
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 29/142 (20%)
Query: 161 RPKQVF-VANHTSMIDFIILEQMTAFAV--------IMQKHPGWVGLLQSTILESVGCIW 211
+PK V A HTS DF++ A + KH + L + +G I
Sbjct: 19 KPKFVVIGAPHTSNWDFVL----GLLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIP 73
Query: 212 FNRSEAKDR-EIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKG----AFELGCT 266
+RS A E V + R + L I PEGT +K G A G
Sbjct: 74 VDRSRAGGLVEQVVEEFRRREEFV----LAIAPEGT---RSKVDKWKTGFYHIARGAGVP 126
Query: 267 VCPVAIKYNK---IFVDAFWNS 285
+ V + Y + F S
Sbjct: 127 ILLVYLDYKRKTVGIGPLFEPS 148
>gnl|CDD|177125 MTH00050, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 170
Score = 33.3 bits (77), Expect = 0.087
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 73 PWNWNIYLFPLWCFGVVFRYFI-LFPLRVIVLTIGWIIFLSSFIPV 117
P+ ++ +LF ++ F VVF FI LF RV F SSF+PV
Sbjct: 43 PYIYSPFLFVVFLFVVVFPLFISLFLSRV---FDSLNEFFSSFVPV 85
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 33.0 bits (76), Expect = 0.17
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 26/113 (23%)
Query: 165 VFVANH-TSMID-FIILEQM------TAFAVIMQKHP-GWVGLLQSTILESVGCIWFNR- 214
+F+ NH ++ID ++ + A A + + GW +LES G I R
Sbjct: 31 IFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGW-------LLESFGAIPVYRP 83
Query: 215 -------SEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGA 260
V + + ++ + IFPEG + + K GA
Sbjct: 84 KDLARGGIGKISNAAVFDAVGEALK--AGGAIGIFPEGGSHDRPRLLPLKAGA 134
>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 32.0 bits (73), Expect = 0.60
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 108 IIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASW---TGVVKYHGPRPSMRPK 163
I+ L ++P H L+K L KL C+F V S T + P ++ +
Sbjct: 355 ILRLKDYVPNHELIKQIQDLESKLLEHAAPDSCNFDVGSDNESTDDLSPIPIDPPLKAE 413
>gnl|CDD|215201 PLN02351, PLN02351, cytochromes b561 family protein.
Length = 242
Score = 31.0 bits (70), Expect = 0.82
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 92 YFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCL--VELICSFFVASWTG 149
Y +L PL ++ IG+I+ I VH L G K +K + L + L F WT
Sbjct: 50 YAVLHPL---LMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVF-GIWT- 104
Query: 150 VVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFA 186
K+HG VAN S+ ++ L ++ F
Sbjct: 105 --KFHGQDG-------IVANFYSLHSWMGLICVSLFG 132
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 31.4 bits (71), Expect = 0.83
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 150 VVKYHGPRPSMR--PKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST---IL 204
+VK + P P + P +FV NH +++D ++ AV + + V S ++
Sbjct: 287 IVKGNPPPPPKKGQPGVLFVCNHRTVLDPVVT------AVALGRKISCVTYSISKFSELI 340
Query: 205 ESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELG 264
+ + +R KD + R L + L+I PEGT + + F EL
Sbjct: 341 SPIKAVALSREREKDAANIKRLLEE-------GDLVICPEGTTCREPFLLRFSALFAELT 393
Query: 265 CTVCPVAI 272
+ PVAI
Sbjct: 394 DRIVPVAI 401
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 30.2 bits (68), Expect = 1.9
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 49/197 (24%)
Query: 107 WIIFLSSF--IPVHSLLKGHDKLRK------KLER-CLVELICSFFVASWTGV-----VK 152
W + +++ +PV +L K D+L + ++R C++ L+ +F W +
Sbjct: 52 WFLLVNTATILPVSALTKLIDQLGRLGVPTYCVQRLCIIPLVVAFRAVWWLNPQIRMHLC 111
Query: 153 Y----HGPRPSM----RPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST-- 202
+ HG S R +V NHTS D +T F ++ L++S+
Sbjct: 112 FDADEHGKPLSWDDISRHGCAYVGNHTSFWDVYAFIGLTPFRHLLNTRT----LMKSSLR 167
Query: 203 -------ILESVG--CIWFNRSEA------KDRE-IVARKLRDHVQGTDNNPLLIFPEGT 246
+ + VG + F K+++ V + + H++ + L FPEG
Sbjct: 168 KIPIFGGVFDRVGHFPVHFKSDSDGNFEVDKEKQAQVQQAIDAHLRLGGS--LAFFPEGA 225
Query: 247 CVNNHYTVM--FKKGAF 261
+N H V+ F+ G F
Sbjct: 226 -INKHPQVLQTFRYGTF 241
>gnl|CDD|129864 TIGR00782, ccoP, cytochrome c oxidase, cbb3-type, subunit III.
This model describes a di-heme subunit of approximately
26 kDa of the cbb3 type copper and heme-containing
cytochrome oxidase [Energy metabolism, Electron
transport].
Length = 285
Score = 29.9 bits (67), Expect = 2.2
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 66 FKSNQPEPWNWNIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFI-PVHSLLKGH 124
+ + P W W Y +W FG Y + +P +V + S V +K
Sbjct: 22 YDNPLPRWWLWTFYATIVWGFG----YLVAYPAWPLVSGATKGLLGWSSRSQVEEEIKKF 77
Query: 125 DKLRKKLERCLVE 137
++ L +
Sbjct: 78 NEKNAAKWAKLAQ 90
>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family.
Members of this family are mannosyltransferase enzymes.
At least some members are localised in endoplasmic
reticulum and involved in GPI anchor biosynthesis.
Length = 412
Score = 30.0 bits (68), Expect = 2.4
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 72 EPWNWNIY-LFPLWCFGVVFR-----YFILFPLRVIVLTIGWIIFLSSFIP 116
PW W P + ++ L +++ I +F+ S P
Sbjct: 258 HPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLLLLAPILIWLFVYSLQP 308
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 29.2 bits (65), Expect = 3.8
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 43/122 (35%)
Query: 61 SFTRCFKSNQPEPWNWNIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSS--FIPVH 118
+F CF Q EP + Y +P W + +GW++ S +IP+
Sbjct: 500 TFILCFSFYQWEPMTYGSYHYPNWS-----------------MVLGWLMLACSVIWIPIM 542
Query: 119 SLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANH-----TSM 173
++K H +ER ++L+CS P+P P F+A H +M
Sbjct: 543 FVIKMHLAPGSFIER--LKLVCS--------------PQPDWGP---FLAKHRGERYKNM 583
Query: 174 ID 175
ID
Sbjct: 584 ID 585
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 29.0 bits (65), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 89 VFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERC-LVELICSFFVASW 147
++ FI F + +I + I I L + + LKG +K +K + LV +I FV W
Sbjct: 198 NWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKSKKNKKAIKLVLIIVILFVIFW 257
>gnl|CDD|203423 pfam06305, DUF1049, Protein of unknown function (DUF1049). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 68
Score = 26.8 bits (60), Expect = 4.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 88 VVFRYFIL---FPLRVIVLT-------IGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVE 137
V Y FPL +++L +GW++ L ++ + L+ +L+K+L++ E
Sbjct: 7 VTLNYLFAQGEFPLSLLLLIAFALGFLLGWLLSLPFYLRLRRRLR---RLKKQLKKLEKE 63
Query: 138 L 138
L
Sbjct: 64 L 64
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 28.5 bits (64), Expect = 4.4
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 85 CFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFV 144
G++ + PL + +L + L + RK+ L+ L+
Sbjct: 1 ILGILLADLLSLPLPLWLLLALLALLLLLLL----------YRRKRRRTLLLLLLLLLLG 50
Query: 145 ASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILE 180
G R + + ++ ++
Sbjct: 51 GLGLG---LRAYRRAANDLSHLLDGKEVTVEGVVAS 83
>gnl|CDD|233882 TIGR02474, pec_lyase, pectate lyase, PelA/Pel-15E family. Members
of this family are isozymes of pectate lyase (EC
4.2.2.2), also called polygalacturonic transeliminase
and alpha-1,4-D-endopolygalacturonic acid lyase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 290
Score = 28.6 bits (64), Expect = 4.7
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 208 GCIWFNRSEAKDREIVARKLRDHVQGTDNNPLL 240
G WF+ S + V + +L
Sbjct: 211 GVAWFDTSRIRGYAYVKSDAAYPLVPEPGAKVL 243
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 28.3 bits (64), Expect = 5.3
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 60/151 (39%)
Query: 165 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGL--------------LQSTILESVGCI 210
V + H S +DF++L + I+ +GL + T+L +G
Sbjct: 25 VLLPTHRSYLDFLLL------SFILF----SLGLPLPHIAAGENLNIPILGTLLRRLGAF 74
Query: 211 WFNRSEAKD-------REIVARKLRDHVQGTDNNPLLIFPEGT----------------- 246
+ RS KD +E V L++ PL F EGT
Sbjct: 75 FIRRSFGKDPLYRAVLQEYVQELLKNGQ------PLEFFIEGTRSRTGKLLPPKLGLLSV 128
Query: 247 CVNNHYTVMFKKGAFELGCTVCPVAIKYNKI 277
V K + + PV+I Y+++
Sbjct: 129 VVE----AYLKGSVPD--VLIVPVSISYDRV 153
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 28.6 bits (64), Expect = 5.5
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 79 YLFP--LWCFGVVFRYFILFPLRVIVLTIGWIIFLSS------FIPVHSLLKGHDKLR-- 128
+ FP +W F ++F F+ +P++++V + I L FI V LK + ++R
Sbjct: 319 FAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLIYILYVLSSFLNFINVKIFLKEYKEIRDY 378
Query: 129 -KKLERCLVELICSFFVASW 147
KK + L FV W
Sbjct: 379 YKKKWYIIFLLPIYNFVVFW 398
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 28.6 bits (64), Expect = 6.0
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 150 VVKYHGPRPSMRPKQ--VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ--STILE 205
+VK P P+ +FV H +++D ++L V+ + P + S IL
Sbjct: 274 IVKGKPPPPASGGNSGVLFVCTHRTLMDPVVLS-----TVLGRSIPAVTYSISRLSEILS 328
Query: 206 SVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGC 265
+ + R R++ A K++ + D L++ PEGT + + F EL
Sbjct: 329 PIPTVRLTR----IRDVDAEKIKRELARGD---LVVCPEGTTCREPFLLRFSALFAELTD 381
Query: 266 TVCPVAIKY 274
+ PVA+ Y
Sbjct: 382 RIVPVAMNY 390
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 28.5 bits (64), Expect = 6.7
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 84 WC-FGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSF 142
WC + V + + PL I I +I+ L +P L +K L SF
Sbjct: 264 WCLYNFVDKIKEVVPLPQIQPYISFILTLIGSLPALVKLFLRPT-KKGFLLALTLCGLSF 322
Query: 143 FVASW 147
F+ S+
Sbjct: 323 FLFSF 327
>gnl|CDD|153388 cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol
dioxygenase class III subunit B-like domain, of unknown
proteins containing a C-terminal AMMECR1 domain. This
subfamily is composed of uncharacterized proteins
containing an N-terminal domain with similarity to the
catalytic B subunit of class III extradiol dioxygenases
and a C-terminal AMMECR1-like domain. This model
represents the N-terminal domain. Class III extradiol
dioxygenases use a non-heme Fe(II) to cleave aromatic
rings between a hydroxylated carbon and an adjacent
non-hydroxylated carbon, however, proteins in this
subfamily do not contain a potential metal binding site
and may not exhibit class III extradiol dioxygenase-like
activity. The AMMECR1 protein was proposed to be a
regulatory factor that is potentially involved in the
development of AMME contiguous gene deletion syndrome.
Length = 256
Score = 28.0 bits (63), Expect = 7.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 11 SSELDLDGPNIEDYLPSG----SSIQEPLGKLRLRDLLDISPTLTEAAGA 56
S L D P Y P G ++I E L K + LL + P L E AG
Sbjct: 171 SHRLTEDAPG--GYDPRGPEFDAAIAEALAKGDVDALLALDPELAEEAGE 218
>gnl|CDD|183061 PRK11260, PRK11260, cystine transporter subunit; Provisional.
Length = 266
Score = 27.8 bits (62), Expect = 9.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 322 IEFAERVRDIISVRAGLKKVPWDGYL 347
+EFAE + + V+A LK WDG L
Sbjct: 68 VEFAEALAKHLGVKASLKPTKWDGML 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.446
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,557,507
Number of extensions: 1923675
Number of successful extensions: 2384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2357
Number of HSP's successfully gapped: 69
Length of query: 375
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 277
Effective length of database: 6,590,910
Effective search space: 1825682070
Effective search space used: 1825682070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)