RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017205
(375 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 5e-09
Identities = 62/401 (15%), Positives = 112/401 (27%), Gaps = 105/401 (26%)
Query: 15 DLDGPNIEDYLPSGSS-------IQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFK 67
+ D +++D S S I L L +V +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLR 88
Query: 68 SNQPEPWNWNIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFL----SSFIPVH-SLLK 122
N + + L + P + + I L F + S L+
Sbjct: 89 IN----YKF------LM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 123 GHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRP--KQVFVANHTSMIDFIILE 180
+ KLR+ L EL A + G + K + + + +
Sbjct: 136 PYLKLRQALL----ELR----PAKNVLI---DG----VLGSGKTWVALD--VCLSYKVQC 178
Query: 181 QMTAFAVIMQKHPGWVGL-----------LQSTILESVGCIWFNRSEAKDR-----EIVA 224
+M F + W+ L + +L + W +RS+ +
Sbjct: 179 KM-DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 225 RKLRDHVQGTD-NNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFW 283
+LR ++ N LL+ V N AF L C + + K D
Sbjct: 232 AELRRLLKSKPYENCLLVLLN---VQNAKAW----NAFNLSCKI--LLTTRFKQVTDFLS 282
Query: 284 NSRKQSFTM-HLLQLMT---SWAVVCDVWYLEPQTLRPGETAIE------FAERVRDIIS 333
+ ++ H +T +++ PQ L AE +RD ++
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 334 VRAGLKKVPWDGYLKYSRPSPKHRERKQQSFAESVLRRLDE 374
WD + + K + ES L L+
Sbjct: 343 T--------WDNWKHVNCD-------KLTTIIESSLNVLEP 368
Score = 38.7 bits (89), Expect = 0.003
Identities = 55/405 (13%), Positives = 107/405 (26%), Gaps = 147/405 (36%)
Query: 6 QLKSSSSELDLDGPNIEDYLPSGSSIQEPLGKLRLRDLLDISP---TLTEAAGAIVDDSF 62
L+ ++D + + D+ + + + LR LL P L ++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLL-----VLLNV- 253
Query: 63 TRCFKSNQPEPWNWNIY-LFPLWCFGVVFRYFILFPLRVIVLT--IGWIIFLSSFIPVHS 119
N + F L C ++++ T FLS+ H
Sbjct: 254 -----------QNAKAWNAFNLSC-------------KILLTTRFKQVTDFLSAATTTHI 289
Query: 120 LLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVAN--HTSMIDFI 177
L H E + L+ + RP P++V N S+I
Sbjct: 290 SLDHHSMTLTPDE--VKSLL-----LKYLDC------RPQDLPREVLTTNPRRLSII--- 333
Query: 178 ILEQMTAFAVIMQKHPG-WVGLLQ------STILESVGCIWFNRSEAKDREIVARKLRDH 230
A ++ W +TI+ES + + +
Sbjct: 334 --------AESIRDGLATWDNWKHVNCDKLTTIIES--SL-----NVLEPAEYRKMFDR- 377
Query: 231 VQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWNSRKQSF 290
L +FP I + + W +S
Sbjct: 378 --------LSVFPPS------------------------AHIPTILLSL--IWFDVIKSD 403
Query: 291 TMHLLQLMTSWAVVCDVW-----------YLEPQTLRPGETAIEFAERVRDIISVRAGLK 339
M ++ + +++V + YLE + E A+ R I+ K
Sbjct: 404 VMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPK 457
Query: 340 KVPW--------DGY----LKYSRPSPKHRERKQQSFAESVLRRL 372
D Y + + H + + ++ R +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMV 496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 36/183 (19%), Positives = 47/183 (25%), Gaps = 90/183 (49%)
Query: 94 ILFPLRVIVLTIGWIIFLSSFIPVHS-LLK------------------------------ 122
I F R + + FL P HS LL
Sbjct: 407 IPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 123 -GHD--KLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIIL 179
G D L + +V+ I V W + F A H ++DF
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPV-KWETTTQ-------------FKATH--ILDF--- 504
Query: 180 EQMTAFAVIMQKHPGW---VGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGT-D 235
PG +G+L + G R IVA GT D
Sbjct: 505 ------------GPGGASGLGVLTHRNKDGTGV----------RVIVA--------GTLD 534
Query: 236 NNP 238
NP
Sbjct: 535 INP 537
Score = 39.6 bits (92), Expect = 0.002
Identities = 48/339 (14%), Positives = 89/339 (26%), Gaps = 129/339 (38%)
Query: 39 RLRD-LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNWNIYLFPLWCFGVVFRYFILFP 97
+L++ I P TE A DD + E L F+ +
Sbjct: 32 QLQEQFNKILPEPTEGFAA--DDEP-----TTPAE----------LVG------KFLGYV 68
Query: 98 LRVI----------VLTIGWIIFLSSFIP---VHSLLKGHDKLRKKLERCLVELICSFFV 144
++ VL + F + ++ +H+L + ELI ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 145 ASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTIL 204
A + RP + S L ++
Sbjct: 129 A------RIMAKRPFDKK-------SNS------------------------ALFRAV-- 149
Query: 205 ESVGCIWFNRSEAKDREIVARKLRDHV---QGTDNNPLLIFPEGTCVNNHYTVM---FKK 258
A+ +VA + QG ++ F E + Y V+ K
Sbjct: 150 --------GEGNAQ---LVA------IFGGQGNTDDY---FEELRDLYQTYHVLVGDLIK 189
Query: 259 GAFELGCTVCPVAIKYNKIFVDAF----WNSRKQ-------------SFTMH-LLQLMTS 300
+ E + + K+F W S + ++QL
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AH 248
Query: 301 WAVVCDVWYLEPQTLRP---GETAIEFAERVRDIISVRA 336
+ V + P LR G T + +++ A
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATG-----HSQGLVTAVA 282
Score = 30.8 bits (69), Expect = 0.85
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 59/191 (30%)
Query: 38 LRLRD-------LLDISPTLTEAAGAIVDDSFTRCFKSNQPEPWNWN------------- 77
L D LL + T ++ + T + +P N
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 78 IYLFPLWCF---GVVFRYFILFP-LRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLER 133
+ F G YF LR ++ + + V L+K + +L R
Sbjct: 156 LVA----IFGGQGNTDDYF---EELR--------DLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 134 CLVELICSFF-----VASWTGVVKYHGPRPSMRPKQVFVANHTSMIDF--IILEQMTAFA 186
++ F + W PS P + ++ + I I + Q+ +
Sbjct: 201 TTLD-AEKVFTQGLNILEW-------LENPSNTPDKDYLL--SIPISCPLIGVIQLAHYV 250
Query: 187 V---IMQKHPG 194
V ++ PG
Sbjct: 251 VTAKLLGFTPG 261
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 28.9 bits (64), Expect = 2.9
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 96 FPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVA--SWTGVVKY 153
F + IV W F + VH + G + + K ++L C+ +++ + +
Sbjct: 172 FGEKTIV---PWKSFRQALHEVHPISSGLEAMALKST---IDLTCNDYISVFEFDIFTRL 225
Query: 154 HGPRPS-MRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPG-WVGLLQSTILES--VGC 209
P S +R H + F+ +++ A PG ++ L T L +G
Sbjct: 226 FQPWSSLLRNWNSLAVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGY 285
Query: 210 IWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVN 249
+ + L + +FP+G N
Sbjct: 286 V-TADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRNQN 324
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 28.9 bits (65), Expect = 3.3
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 43 LLDISPTLTEAAGAIVDD-----SFTRCFKSNQPEPWNWNIY 79
+D+ PT+ + G + S +P+ W ++
Sbjct: 399 SIDVMPTILDWLGGKIPHACDGLSLLPFLSEGRPQDWRTELH 440
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.2
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 27/54 (50%)
Query: 6 QLKSSSSELDLDGPNIEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVD 59
LK + L L Y D +P L A A ++
Sbjct: 21 ALKKLQASLKL-------YAD------------------DSAPAL--AIKATME 47
>3nnb_A Alginate lyase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Length = 382
Score = 28.2 bits (62), Expect = 5.2
Identities = 9/63 (14%), Positives = 24/63 (38%)
Query: 133 RCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKH 192
+ V+ + +F+ + T + + ++ K + MID +M +M+
Sbjct: 125 QKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENS 184
Query: 193 PGW 195
+
Sbjct: 185 KAF 187
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 27.2 bits (61), Expect = 7.2
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 292 MHLLQLMTSWAVVCDVWYLEPQTLRP--GETAIEFAERVRDII 332
++ + D ++ P P GE + +R + +
Sbjct: 91 KTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAV 133
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 27.7 bits (62), Expect = 7.5
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 13/65 (20%)
Query: 25 LPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDD-------SFTRCFKSNQPEPWNWN 77
+ S + D+ PTL G + + + + +
Sbjct: 346 IKPRKSDPLMIA------FADLYPTLLSMMGFSKEIPETVQTFDLSNEVLTGKNKKDLVQ 399
Query: 78 IYLFP 82
Y F
Sbjct: 400 PYYFV 404
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics,
APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str}
SCOP: a.118.8.5
Length = 207
Score = 27.0 bits (59), Expect = 8.4
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 12/131 (9%)
Query: 211 WFNRSEAKDREIVARKLRDHVQGTDN-------NPLLIFPEGTCVNNHYTVMFKKGA--F 261
WF++ A D R H ++ F+ A +
Sbjct: 46 WFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMY 105
Query: 262 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 321
A + + D + + F A L G
Sbjct: 106 ATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPL---GGLY 162
Query: 322 IEFAERVRDII 332
+ AE RDI+
Sbjct: 163 LHHAEEHRDIV 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.446
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,920,493
Number of extensions: 354595
Number of successful extensions: 710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 16
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.7 bits)