RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017205
         (375 letters)



>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina
          platensis [TaxId: 118562]}
          Length = 161

 Score = 28.7 bits (64), Expect = 0.71
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 10 SSSELDLDGPNIEDYLPSGSSIQEPLGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSN 69
           +S +      ++ Y  +G               +  + T++  A  IV ++  +    +
Sbjct: 20 DASAIQ----KLKAYFATGEL------------RVRAATTISANAANIVKEAVAKSLLYS 63

Query: 70 QPEPWNWNIY 79
                 N+Y
Sbjct: 64 DVTRPGGNMY 73


>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 29.2 bits (65), Expect = 0.74
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 19/101 (18%)

Query: 165 VFVANHTSMIDFIILEQMTAFA--------VIMQKHPGWVGLLQSTILESVGCIWFNRS- 215
           V ++NH +  D  I+  +            + +         L          I      
Sbjct: 133 VLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKK 192

Query: 216 --------EAKDREIVARKLRD--HVQGTDNNPLLIFPEGT 246
                       R+   R L++   +    +  + I P G 
Sbjct: 193 HMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGG 233


>d1l5oa_ c.39.1.1 (A:) Nicotinate
           mononucleotide:5,6-dimethylbenzimidazole
           phosphoribosyltransferase (CobT) {Salmonella typhimurium
           [TaxId: 90371]}
          Length = 346

 Score = 28.3 bits (63), Expect = 1.4
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 19  PNIEDYLPSGSSIQEP-----LGKLRLRDLLDISPTLTEAAGAIV 58
           P +  YL       E      L  L +   L ++  L E +GA +
Sbjct: 276 PAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSGAAL 320


>d1j33a_ c.39.1.1 (A:) Nicotinate
           mononucleotide:5,6-dimethylbenzimidazole
           phosphoribosyltransferase (CobT) {Thermus thermophilus
           [TaxId: 274]}
          Length = 333

 Score = 28.3 bits (63), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 19  PNIEDYLPSGSSIQEP-----LGKLRLRDLLDISPTLTEAAGAIV 58
           P + D+L +G   +EP     L  L LR LLD+   L E  GA++
Sbjct: 264 PGLRDHLFAGHLSREPGHRHQLEALGLRPLLDLDLALGEGTGAVL 308


>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
           [TaxId: 1427]}
          Length = 316

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 272 IKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLE 311
           + Y++ + +AFWN  +  +     Q     +   DV   E
Sbjct: 104 VHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHE 143


>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 179

 Score = 26.2 bits (57), Expect = 5.4
 Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 12/131 (9%)

Query: 211 WFNRSEAKDREIVARKLRDHVQGTDN--NPLLIFPEGT-----CVNNHYTVMFKKGA--F 261
           WF++  A D     R    H        +  L   E +      ++      F+  A  +
Sbjct: 24  WFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMY 83

Query: 262 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 321
                    A +  +   D   +   + F                           G   
Sbjct: 84  ATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDI---AAQQRACDLNQPLGGLY 140

Query: 322 IEFAERVRDII 332
           +  AE  RDI+
Sbjct: 141 LHHAEEHRDIV 151


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 26.5 bits (58), Expect = 5.8
 Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 2/97 (2%)

Query: 212 FNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVA 271
           F R    D E VA     H  G  +        G         +  +G            
Sbjct: 227 FARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEP--EAAGIEAQGLGWKSAYRTGKG 284

Query: 272 IKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVW 308
                  ++  W +    ++ +  + +  +       
Sbjct: 285 ADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKS 321


>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
           ksm-k38 [TaxId: 1409]}
          Length = 390

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 19/181 (10%), Positives = 47/181 (25%), Gaps = 5/181 (2%)

Query: 71  PEPWNWNIYLFPLWCFGVVFRYFILFPLRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKK 130
              W W  +    W       +   F        +        ++   ++   H +++ +
Sbjct: 152 DFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDE 211

Query: 131 LERCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQ 190
           L+           +  +      H P            N      F++ E        ++
Sbjct: 212 LKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALE 271

Query: 191 KHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNN 250
            +   +    S     +   ++  S+      +   LR  +        + F     V+N
Sbjct: 272 FYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHAVTF-----VDN 326

Query: 251 H 251
           H
Sbjct: 327 H 327


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,479,228
Number of extensions: 70461
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 12
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)