Query 017209
Match_columns 375
No_of_seqs 122 out of 155
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09728 Taxilin: Myosin-like 100.0 5.2E-73 1.1E-77 553.3 35.7 279 82-360 24-309 (309)
2 KOG1850 Myosin-like coiled-coi 100.0 1.5E-58 3.2E-63 448.0 38.2 272 91-363 36-318 (391)
3 COG1196 Smc Chromosome segrega 97.6 0.24 5.3E-06 57.1 38.8 101 251-351 826-926 (1163)
4 TIGR02169 SMC_prok_A chromosom 97.5 0.29 6.4E-06 54.7 39.5 23 102-124 675-697 (1164)
5 TIGR02169 SMC_prok_A chromosom 97.3 0.44 9.6E-06 53.3 38.8 68 279-346 425-492 (1164)
6 TIGR02168 SMC_prok_B chromosom 97.0 0.82 1.8E-05 51.0 39.8 11 106-116 682-692 (1179)
7 PF07888 CALCOCO1: Calcium bin 97.0 0.74 1.6E-05 49.6 35.1 36 325-360 387-423 (546)
8 TIGR02168 SMC_prok_B chromosom 96.8 1.3 2.8E-05 49.5 38.8 22 104-125 673-694 (1179)
9 KOG0161 Myosin class II heavy 96.5 3.4 7.4E-05 50.5 37.8 159 172-333 936-1100(1930)
10 KOG0161 Myosin class II heavy 96.4 4 8.7E-05 49.9 38.0 186 156-341 945-1143(1930)
11 TIGR00606 rad50 rad50. This fa 96.3 3.2 7E-05 48.7 37.0 100 260-361 984-1085(1311)
12 PF05483 SCP-1: Synaptonemal c 96.2 2.7 5.8E-05 46.5 37.4 108 252-359 533-644 (786)
13 KOG1029 Endocytic adaptor prot 96.2 2.9 6.4E-05 47.0 28.4 103 232-341 416-518 (1118)
14 PF13851 GAS: Growth-arrest sp 95.8 0.75 1.6E-05 43.3 16.4 113 101-227 62-177 (201)
15 PF09728 Taxilin: Myosin-like 95.5 3.1 6.6E-05 41.7 32.0 58 99-156 34-91 (309)
16 KOG2008 BTK-associated SH3-dom 95.4 3.7 8E-05 41.9 26.5 192 168-362 20-233 (426)
17 COG1196 Smc Chromosome segrega 95.3 7.7 0.00017 45.1 38.9 61 265-325 388-448 (1163)
18 KOG4674 Uncharacterized conser 94.8 13 0.00029 45.3 34.5 188 129-328 1178-1386(1822)
19 PF00261 Tropomyosin: Tropomyo 94.3 5.1 0.00011 38.2 29.8 70 260-329 162-231 (237)
20 KOG0980 Actin-binding protein 94.0 14 0.0003 42.2 26.9 51 301-351 493-543 (980)
21 PF07888 CALCOCO1: Calcium bin 93.9 11 0.00024 40.8 33.7 14 349-362 380-393 (546)
22 KOG0933 Structural maintenance 93.8 17 0.00036 42.2 32.8 189 139-335 737-939 (1174)
23 PF13870 DUF4201: Domain of un 93.7 5.2 0.00011 36.3 21.4 156 193-357 13-172 (177)
24 PF00038 Filament: Intermediat 93.6 7.5 0.00016 37.8 34.1 216 138-353 20-278 (312)
25 PRK04778 septation ring format 93.3 14 0.0003 39.8 26.8 39 249-287 400-438 (569)
26 PF09755 DUF2046: Uncharacteri 93.0 11 0.00025 38.1 28.3 33 339-371 180-212 (310)
27 PRK11637 AmiB activator; Provi 92.9 13 0.00027 38.4 29.8 24 102-125 48-71 (428)
28 KOG4674 Uncharacterized conser 92.6 32 0.00069 42.3 37.1 209 100-323 653-893 (1822)
29 PRK03918 chromosome segregatio 92.3 22 0.00047 39.5 37.8 22 162-183 449-470 (880)
30 KOG0996 Structural maintenance 91.8 32 0.0007 40.5 34.7 66 289-354 543-608 (1293)
31 KOG0978 E3 ubiquitin ligase in 91.1 30 0.00064 38.7 31.8 27 198-224 466-492 (698)
32 KOG0996 Structural maintenance 90.9 40 0.00086 39.9 31.4 86 251-336 954-1039(1293)
33 PF04849 HAP1_N: HAP1 N-termin 90.7 21 0.00045 36.2 19.0 135 138-294 169-303 (306)
34 KOG0612 Rho-associated, coiled 90.5 43 0.00094 39.7 31.3 178 133-318 462-660 (1317)
35 PF15070 GOLGA2L5: Putative go 90.4 32 0.00069 37.9 33.8 214 113-338 2-238 (617)
36 KOG2129 Uncharacterized conser 89.9 22 0.00049 37.7 16.9 60 300-359 206-275 (552)
37 PF00038 Filament: Intermediat 89.8 21 0.00045 34.8 35.1 236 101-346 54-306 (312)
38 PF04156 IncA: IncA protein; 89.7 15 0.00033 33.2 16.7 86 267-352 102-187 (191)
39 PF12128 DUF3584: Protein of u 88.5 58 0.0013 38.3 38.5 98 262-360 437-534 (1201)
40 KOG0946 ER-Golgi vesicle-tethe 88.4 52 0.0011 37.6 25.1 201 158-364 650-882 (970)
41 PLN03229 acetyl-coenzyme A car 88.3 50 0.0011 37.3 20.1 100 113-214 467-579 (762)
42 PF05667 DUF812: Protein of un 87.9 47 0.001 36.5 31.6 81 270-357 487-567 (594)
43 PRK03918 chromosome segregatio 87.7 51 0.0011 36.6 39.0 64 253-316 633-701 (880)
44 PRK11637 AmiB activator; Provi 87.6 37 0.0008 35.0 26.7 81 279-359 175-255 (428)
45 PRK02224 chromosome segregatio 87.3 54 0.0012 36.6 37.9 55 254-308 538-592 (880)
46 KOG0250 DNA repair protein RAD 86.9 70 0.0015 37.5 29.1 214 98-328 658-890 (1074)
47 PF05557 MAD: Mitotic checkpoi 86.7 0.2 4.4E-06 54.8 0.0 60 295-358 250-309 (722)
48 TIGR03752 conj_TIGR03752 integ 86.3 8.3 0.00018 41.1 11.5 70 291-360 69-139 (472)
49 KOG0978 E3 ubiquitin ligase in 86.2 63 0.0014 36.3 30.5 62 257-325 563-624 (698)
50 PRK02224 chromosome segregatio 85.7 65 0.0014 35.9 38.0 45 273-317 645-689 (880)
51 TIGR00606 rad50 rad50. This fa 85.4 88 0.0019 37.2 38.3 53 276-328 972-1024(1311)
52 PF12777 MT: Microtubule-bindi 84.8 4.7 0.0001 40.6 8.6 91 263-353 224-314 (344)
53 KOG4643 Uncharacterized coiled 84.4 92 0.002 36.6 30.4 50 95-151 286-337 (1195)
54 PF13851 GAS: Growth-arrest sp 83.0 42 0.00092 31.6 24.3 140 165-332 2-144 (201)
55 KOG0964 Structural maintenance 82.9 1E+02 0.0023 36.1 30.0 226 128-359 183-444 (1200)
56 PHA02562 46 endonuclease subun 82.8 66 0.0014 33.7 32.3 37 289-325 345-381 (562)
57 PRK04863 mukB cell division pr 82.2 1.3E+02 0.0028 36.7 33.6 43 311-353 560-602 (1486)
58 PF08614 ATG16: Autophagy prot 82.2 12 0.00027 34.6 9.7 86 277-362 91-176 (194)
59 COG1340 Uncharacterized archae 80.4 70 0.0015 32.4 34.1 192 128-319 40-259 (294)
60 TIGR03185 DNA_S_dndD DNA sulfu 78.8 1.1E+02 0.0023 33.6 32.4 47 268-314 422-468 (650)
61 PRK01156 chromosome segregatio 78.8 1.2E+02 0.0026 34.1 32.6 59 269-327 669-727 (895)
62 KOG0250 DNA repair protein RAD 78.6 1.5E+02 0.0032 35.0 29.9 39 276-314 374-413 (1074)
63 PF01576 Myosin_tail_1: Myosin 78.5 0.66 1.4E-05 52.3 0.0 64 300-363 375-445 (859)
64 PF09789 DUF2353: Uncharacteri 78.3 84 0.0018 32.1 15.0 85 275-359 66-155 (319)
65 PF10498 IFT57: Intra-flagella 77.6 91 0.002 32.2 15.4 108 197-305 245-352 (359)
66 PF08317 Spc7: Spc7 kinetochor 77.6 81 0.0018 31.6 29.5 22 131-152 70-91 (325)
67 PF05622 HOOK: HOOK protein; 77.5 0.74 1.6E-05 50.5 0.0 151 166-318 364-525 (713)
68 PF01576 Myosin_tail_1: Myosin 77.2 0.76 1.6E-05 51.8 0.0 101 129-234 145-250 (859)
69 KOG4083 Head-elevated expressi 76.8 20 0.00043 34.0 9.1 71 118-188 76-146 (192)
70 KOG0977 Nuclear envelope prote 76.7 1.2E+02 0.0026 33.2 26.3 277 67-359 80-378 (546)
71 KOG0018 Structural maintenance 76.5 1.7E+02 0.0036 34.6 24.4 92 131-235 703-796 (1141)
72 PF04111 APG6: Autophagy prote 76.0 72 0.0016 32.1 13.5 87 252-352 49-135 (314)
73 PF05622 HOOK: HOOK protein; 75.2 0.93 2E-05 49.8 0.0 67 255-325 327-393 (713)
74 PF05557 MAD: Mitotic checkpoi 74.5 3.3 7.2E-05 45.5 4.0 239 101-359 257-532 (722)
75 PF08614 ATG16: Autophagy prot 73.6 51 0.0011 30.5 11.1 65 254-318 117-181 (194)
76 PF10458 Val_tRNA-synt_C: Valy 72.8 23 0.00049 27.5 7.3 28 293-320 2-29 (66)
77 TIGR03513 GldL_gliding gliding 72.5 94 0.002 29.9 14.5 93 264-356 103-198 (202)
78 PF05701 WEMBL: Weak chloropla 71.6 1.5E+02 0.0032 31.8 37.1 84 254-337 243-330 (522)
79 PF06005 DUF904: Protein of un 71.4 52 0.0011 26.5 10.4 65 274-345 4-68 (72)
80 PF10174 Cast: RIM-binding pro 71.0 2E+02 0.0042 32.9 32.8 23 123-145 278-300 (775)
81 PF12128 DUF3584: Protein of u 70.9 2.3E+02 0.0049 33.6 36.6 68 258-325 814-881 (1201)
82 KOG0612 Rho-associated, coiled 70.9 2.4E+02 0.0052 33.9 30.2 26 128-153 507-532 (1317)
83 KOG3478 Prefoldin subunit 6, K 70.9 75 0.0016 28.1 11.5 45 106-154 3-47 (120)
84 PF05278 PEARLI-4: Arabidopsis 70.5 88 0.0019 31.3 12.4 61 290-350 202-262 (269)
85 KOG0976 Rho/Rac1-interacting s 70.4 2.1E+02 0.0047 33.2 34.1 97 258-354 268-368 (1265)
86 KOG0946 ER-Golgi vesicle-tethe 70.2 2.1E+02 0.0046 33.0 25.3 34 301-334 847-880 (970)
87 PF12325 TMF_TATA_bd: TATA ele 69.5 58 0.0013 28.6 9.8 64 295-358 16-82 (120)
88 KOG0977 Nuclear envelope prote 69.1 1.8E+02 0.004 31.9 18.7 81 108-188 176-265 (546)
89 PRK10884 SH3 domain-containing 68.8 1E+02 0.0022 29.4 12.1 15 275-289 119-133 (206)
90 KOG0995 Centromere-associated 68.8 80 0.0017 34.7 12.5 52 296-347 253-304 (581)
91 PF07989 Microtub_assoc: Micro 68.6 51 0.0011 26.6 8.6 60 299-358 4-71 (75)
92 PF06005 DUF904: Protein of un 67.9 63 0.0014 26.0 10.8 68 286-356 2-69 (72)
93 KOG0971 Microtubule-associated 67.5 2.6E+02 0.0055 32.9 38.4 58 274-331 475-533 (1243)
94 PF05010 TACC: Transforming ac 67.1 1.2E+02 0.0026 29.0 28.9 96 252-357 103-202 (207)
95 PF12718 Tropomyosin_1: Tropom 66.2 99 0.0021 27.7 20.3 54 267-320 80-133 (143)
96 PF13863 DUF4200: Domain of un 65.1 85 0.0018 26.5 16.1 65 215-280 50-114 (126)
97 PF10224 DUF2205: Predicted co 64.2 54 0.0012 27.1 8.1 41 168-208 26-66 (80)
98 PRK04778 septation ring format 63.9 2.2E+02 0.0047 30.8 34.8 78 263-340 351-428 (569)
99 PF10168 Nup88: Nuclear pore c 63.1 2.6E+02 0.0057 31.5 18.3 9 51-59 461-469 (717)
100 PF10174 Cast: RIM-binding pro 62.8 2.8E+02 0.0061 31.7 36.1 98 264-361 469-586 (775)
101 PF02183 HALZ: Homeobox associ 61.3 26 0.00056 25.8 5.2 41 305-345 1-41 (45)
102 PF10481 CENP-F_N: Cenp-F N-te 59.9 2E+02 0.0044 29.2 14.9 140 172-318 46-192 (307)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.4 1.3E+02 0.0027 26.3 18.5 29 292-320 102-130 (132)
104 KOG1962 B-cell receptor-associ 57.9 1E+02 0.0022 29.9 10.0 51 290-340 160-210 (216)
105 PF10226 DUF2216: Uncharacteri 57.0 1.9E+02 0.004 27.8 14.6 53 149-201 18-77 (195)
106 PF00261 Tropomyosin: Tropomyo 57.0 1.8E+02 0.004 27.7 30.7 94 253-346 134-227 (237)
107 PF14662 CCDC155: Coiled-coil 56.7 1.9E+02 0.0041 27.7 24.4 140 139-283 11-153 (193)
108 PRK02119 hypothetical protein; 56.6 1E+02 0.0022 24.7 9.0 51 296-360 3-53 (73)
109 PF10212 TTKRSYEDQ: Predicted 56.4 3E+02 0.0065 30.1 19.9 77 263-339 407-485 (518)
110 cd07429 Cby_like Chibby, a nuc 56.2 29 0.00063 30.2 5.5 35 295-333 72-106 (108)
111 PF05701 WEMBL: Weak chloropla 54.3 3.1E+02 0.0066 29.5 35.9 54 96-149 125-189 (522)
112 PF07106 TBPIP: Tat binding pr 53.7 99 0.0022 27.8 8.8 88 254-346 73-161 (169)
113 TIGR01843 type_I_hlyD type I s 53.3 2.4E+02 0.0052 28.0 25.1 110 249-358 154-267 (423)
114 KOG1962 B-cell receptor-associ 52.8 2.3E+02 0.0049 27.6 12.0 76 270-349 130-205 (216)
115 PF04012 PspA_IM30: PspA/IM30 52.5 2E+02 0.0043 26.8 19.7 89 268-357 92-185 (221)
116 PF15070 GOLGA2L5: Putative go 52.1 3.7E+02 0.0081 29.8 32.8 42 319-360 349-390 (617)
117 PRK10884 SH3 domain-containing 51.8 2.2E+02 0.0048 27.1 11.5 40 319-358 128-167 (206)
118 PF14645 Chibby: Chibby family 50.0 53 0.0011 28.7 6.1 38 293-334 69-106 (116)
119 PF06785 UPF0242: Uncharacteri 48.5 3.4E+02 0.0074 28.4 16.8 81 281-361 113-219 (401)
120 PF07106 TBPIP: Tat binding pr 48.5 2E+02 0.0044 25.8 10.7 6 177-182 6-11 (169)
121 KOG4360 Uncharacterized coiled 47.3 4.3E+02 0.0093 29.1 17.7 73 132-211 159-234 (596)
122 KOG3650 Predicted coiled-coil 46.6 76 0.0017 27.6 6.4 39 168-206 66-104 (120)
123 PF10205 KLRAQ: Predicted coil 46.5 2E+02 0.0042 25.0 10.2 65 253-317 5-69 (102)
124 KOG0244 Kinesin-like protein [ 46.3 5.5E+02 0.012 30.1 20.0 186 127-332 462-655 (913)
125 PRK15365 type III secretion sy 46.2 1.3E+02 0.0028 26.1 7.6 18 266-283 18-35 (107)
126 PF15294 Leu_zip: Leucine zipp 46.1 3.3E+02 0.0071 27.5 14.6 45 187-238 133-178 (278)
127 KOG2129 Uncharacterized conser 45.8 4.2E+02 0.0091 28.6 25.9 62 294-361 259-320 (552)
128 PF05615 THOC7: Tho complex su 45.4 2.1E+02 0.0045 24.9 10.3 72 273-345 52-123 (139)
129 cd07605 I-BAR_IMD Inverse (I)- 45.2 2.9E+02 0.0064 26.7 14.6 70 287-361 111-185 (223)
130 PRK04863 mukB cell division pr 44.6 6.9E+02 0.015 30.8 34.3 49 252-300 998-1046(1486)
131 COG1579 Zn-ribbon protein, pos 44.5 3.2E+02 0.0069 26.9 19.8 28 248-275 54-81 (239)
132 PF06810 Phage_GP20: Phage min 44.2 1.4E+02 0.003 27.1 8.2 45 275-319 28-75 (155)
133 PF12718 Tropomyosin_1: Tropom 43.1 2.5E+02 0.0053 25.2 19.5 70 252-325 34-103 (143)
134 PF09602 PhaP_Bmeg: Polyhydrox 43.0 2.9E+02 0.0062 25.9 18.2 28 259-286 135-162 (165)
135 PHA02562 46 endonuclease subun 42.8 4.2E+02 0.0091 27.8 31.2 10 25-34 31-40 (562)
136 PF06160 EzrA: Septation ring 42.6 4.7E+02 0.01 28.3 26.8 54 250-303 397-459 (560)
137 PF03962 Mnd1: Mnd1 family; I 42.6 2.4E+02 0.0051 26.4 9.7 100 255-355 64-167 (188)
138 PF05911 DUF869: Plant protein 41.4 6E+02 0.013 29.1 25.8 70 295-365 134-212 (769)
139 KOG0962 DNA repair protein RAD 41.3 7.4E+02 0.016 30.2 26.6 109 251-359 266-375 (1294)
140 KOG0995 Centromere-associated 40.9 5.5E+02 0.012 28.5 22.5 186 140-350 169-359 (581)
141 PF10211 Ax_dynein_light: Axon 40.6 3.1E+02 0.0067 25.6 14.8 61 291-351 123-184 (189)
142 KOG0933 Structural maintenance 40.4 7.1E+02 0.015 29.7 33.0 104 258-361 834-944 (1174)
143 smart00435 TOPEUc DNA Topoisom 40.0 2.3E+02 0.0049 29.9 9.9 54 263-316 245-298 (391)
144 KOG2391 Vacuolar sorting prote 39.6 2.6E+02 0.0056 29.2 10.0 58 298-355 221-278 (365)
145 PF09730 BicD: Microtubule-ass 39.4 6.3E+02 0.014 28.8 24.6 43 262-304 421-463 (717)
146 KOG1029 Endocytic adaptor prot 39.1 6.9E+02 0.015 29.2 35.2 21 79-99 297-320 (1118)
147 PF05010 TACC: Transforming ac 39.0 3.6E+02 0.0078 25.9 25.3 94 254-347 70-171 (207)
148 COG1340 Uncharacterized archae 38.0 4.5E+02 0.0098 26.7 32.5 19 291-309 189-207 (294)
149 PF10146 zf-C4H2: Zinc finger- 37.4 4E+02 0.0086 25.9 10.5 67 295-361 11-77 (230)
150 PRK13182 racA polar chromosome 37.3 2.1E+02 0.0045 26.7 8.3 22 293-314 123-144 (175)
151 KOG4603 TBP-1 interacting prot 36.2 71 0.0015 30.3 5.0 87 283-369 22-118 (201)
152 TIGR03752 conj_TIGR03752 integ 35.7 3.1E+02 0.0067 29.7 10.2 16 141-156 78-93 (472)
153 PF00769 ERM: Ezrin/radixin/mo 35.7 4.2E+02 0.0091 25.7 12.3 53 295-347 61-113 (246)
154 PF06810 Phage_GP20: Phage min 35.4 3.2E+02 0.0068 24.8 9.1 34 287-320 26-62 (155)
155 PF07544 Med9: RNA polymerase 35.1 1.6E+02 0.0034 24.0 6.4 70 288-357 7-79 (83)
156 PF06156 DUF972: Protein of un 34.9 2.7E+02 0.0058 24.0 8.0 45 307-351 13-57 (107)
157 PF04642 DUF601: Protein of un 34.8 1.6E+02 0.0034 29.6 7.4 69 278-350 204-272 (311)
158 PF02403 Seryl_tRNA_N: Seryl-t 34.4 2.7E+02 0.0058 23.0 10.1 89 273-362 8-99 (108)
159 PF06156 DUF972: Protein of un 34.2 2.1E+02 0.0045 24.7 7.3 50 274-323 8-57 (107)
160 PF15254 CCDC14: Coiled-coil d 33.8 8.1E+02 0.017 28.4 19.1 158 191-363 392-555 (861)
161 KOG4643 Uncharacterized coiled 33.7 9E+02 0.02 29.0 30.5 53 104-156 404-456 (1195)
162 PF10168 Nup88: Nuclear pore c 33.5 7.5E+02 0.016 28.0 20.3 21 197-217 597-617 (717)
163 PRK15422 septal ring assembly 33.3 2.8E+02 0.0062 23.0 10.2 66 276-341 6-71 (79)
164 PF10234 Cluap1: Clusterin-ass 33.1 5.1E+02 0.011 25.9 12.7 24 255-278 224-247 (267)
165 PLN03188 kinesin-12 family pro 33.1 9.9E+02 0.021 29.2 24.5 103 205-307 1112-1237(1320)
166 KOG0288 WD40 repeat protein Ti 32.9 6.5E+02 0.014 27.1 13.5 54 101-154 13-73 (459)
167 PF11559 ADIP: Afadin- and alp 32.9 3.4E+02 0.0074 23.8 15.5 104 116-227 39-142 (151)
168 COG2900 SlyX Uncharacterized p 32.7 2.8E+02 0.006 22.7 7.5 36 250-285 26-61 (72)
169 PRK13169 DNA replication intia 31.8 2.4E+02 0.0051 24.6 7.2 46 274-319 8-53 (110)
170 PF04111 APG6: Autophagy prote 31.6 5.5E+02 0.012 25.8 11.9 45 291-335 46-90 (314)
171 KOG4673 Transcription factor T 31.5 8.6E+02 0.019 28.0 33.8 188 129-317 413-634 (961)
172 PRK05729 valS valyl-tRNA synth 31.5 1.6E+02 0.0034 33.6 7.7 30 293-322 809-838 (874)
173 PF13747 DUF4164: Domain of un 30.4 3.2E+02 0.0069 22.7 8.9 61 298-358 11-74 (89)
174 cd00179 SynN Syntaxin N-termin 30.4 3.5E+02 0.0076 23.2 13.2 107 97-220 9-115 (151)
175 KOG0964 Structural maintenance 30.3 1E+03 0.022 28.5 31.3 70 260-329 390-459 (1200)
176 PF00170 bZIP_1: bZIP transcri 30.1 2.5E+02 0.0053 21.3 8.8 34 325-358 28-61 (64)
177 PF13942 Lipoprotein_20: YfhG 29.9 4.5E+02 0.0097 25.0 9.1 53 306-358 113-165 (179)
178 PF12999 PRKCSH-like: Glucosid 29.5 2.3E+02 0.005 26.7 7.3 42 136-177 117-158 (176)
179 PF05546 She9_MDM33: She9 / Md 28.7 5.5E+02 0.012 24.9 11.3 75 265-342 3-79 (207)
180 PRK04406 hypothetical protein; 28.6 3.2E+02 0.0068 22.1 9.1 49 297-359 6-54 (75)
181 PRK11020 hypothetical protein; 28.4 2.1E+02 0.0045 25.4 6.3 50 286-338 29-78 (118)
182 PF09731 Mitofilin: Mitochondr 28.3 7.6E+02 0.017 26.4 25.8 24 129-152 255-278 (582)
183 KOG3856 Uncharacterized conser 27.9 1.3E+02 0.0028 27.2 5.0 38 316-353 10-47 (135)
184 COG3096 MukB Uncharacterized p 27.8 1.1E+03 0.023 27.9 25.2 174 131-317 919-1109(1480)
185 PF13990 YjcZ: YjcZ-like prote 27.7 6.4E+02 0.014 25.4 10.4 55 174-228 71-125 (270)
186 PF12777 MT: Microtubule-bindi 27.3 3.9E+02 0.0084 26.9 9.1 70 247-316 243-312 (344)
187 PF02050 FliJ: Flagellar FliJ 27.0 3.2E+02 0.0069 21.6 15.3 79 260-340 19-97 (123)
188 PF15619 Lebercilin: Ciliary p 27.0 5.4E+02 0.012 24.3 24.5 65 168-239 15-82 (194)
189 PTZ00419 valyl-tRNA synthetase 26.6 2.8E+02 0.0061 32.1 8.8 30 293-322 927-956 (995)
190 PRK09039 hypothetical protein; 26.6 7E+02 0.015 25.4 21.4 64 286-356 135-199 (343)
191 PRK05431 seryl-tRNA synthetase 26.5 6.4E+02 0.014 26.4 10.7 29 334-362 70-98 (425)
192 KOG0804 Cytoplasmic Zn-finger 26.1 8.7E+02 0.019 26.4 13.9 101 263-363 328-440 (493)
193 TIGR00293 prefoldin, archaeal 25.9 4.1E+02 0.0088 22.5 7.7 23 259-281 12-34 (126)
194 TIGR02449 conserved hypothetic 25.7 3.5E+02 0.0075 21.6 7.2 44 134-181 12-55 (65)
195 PF15397 DUF4618: Domain of un 25.4 6.9E+02 0.015 24.9 29.7 68 292-359 146-215 (258)
196 PF08317 Spc7: Spc7 kinetochor 25.3 7E+02 0.015 25.0 25.3 11 162-172 116-126 (325)
197 PLN02939 transferase, transfer 24.7 1.2E+03 0.026 27.6 25.3 28 258-285 367-394 (977)
198 PF14942 Muted: Organelle biog 24.7 5.3E+02 0.011 23.4 10.9 80 126-212 59-141 (145)
199 PRK14900 valS valyl-tRNA synth 24.6 2.7E+02 0.0058 32.7 8.2 61 292-358 839-905 (1052)
200 KOG3859 Septins (P-loop GTPase 24.5 8.1E+02 0.018 25.5 12.9 52 258-319 350-401 (406)
201 KOG4005 Transcription factor X 24.1 5.2E+02 0.011 25.9 8.8 55 292-346 87-141 (292)
202 PF11932 DUF3450: Protein of u 24.0 6.4E+02 0.014 24.1 12.7 81 276-356 23-103 (251)
203 PF08580 KAR9: Yeast cortical 23.8 4.8E+02 0.01 29.4 9.6 87 134-220 233-329 (683)
204 PF09432 THP2: Tho complex sub 23.8 2.7E+02 0.0059 25.2 6.3 51 263-325 55-108 (132)
205 KOG4403 Cell surface glycoprot 23.6 9.8E+02 0.021 26.1 14.8 86 136-227 228-313 (575)
206 PF06632 XRCC4: DNA double-str 23.6 8.2E+02 0.018 25.2 12.1 64 296-359 138-209 (342)
207 PF10212 TTKRSYEDQ: Predicted 23.5 1E+03 0.022 26.2 15.4 37 258-294 478-514 (518)
208 PF06160 EzrA: Septation ring 23.5 9.7E+02 0.021 26.0 31.7 56 263-318 347-402 (560)
209 TIGR02894 DNA_bind_RsfA transc 23.4 4.7E+02 0.01 24.4 8.0 80 145-224 52-149 (161)
210 PF04380 BMFP: Membrane fusoge 23.3 4E+02 0.0087 21.5 6.8 29 276-304 8-36 (79)
211 PRK13169 DNA replication intia 23.3 5E+02 0.011 22.6 8.0 46 305-350 11-56 (110)
212 PF09730 BicD: Microtubule-ass 23.0 1.2E+03 0.025 26.7 24.4 77 283-362 109-185 (717)
213 PTZ00464 SNF-7-like protein; P 22.8 6.8E+02 0.015 24.0 11.6 66 292-357 22-95 (211)
214 TIGR01808 CM_M_hiGC-arch monof 22.7 2E+02 0.0044 22.8 4.9 35 311-345 2-36 (74)
215 KOG2077 JNK/SAPK-associated pr 22.6 9E+02 0.019 27.3 11.0 127 136-279 11-147 (832)
216 PLN02943 aminoacyl-tRNA ligase 22.5 2.9E+02 0.0063 32.0 7.9 28 293-320 887-914 (958)
217 PF03962 Mnd1: Mnd1 family; I 22.4 6.4E+02 0.014 23.5 9.7 22 330-351 103-124 (188)
218 PF14988 DUF4515: Domain of un 22.0 6.9E+02 0.015 23.7 21.4 68 143-217 18-85 (206)
219 PF07989 Microtub_assoc: Micro 21.9 4.3E+02 0.0093 21.3 7.2 53 99-151 5-69 (75)
220 PLN02381 valyl-tRNA synthetase 21.7 3.1E+02 0.0067 32.3 8.0 30 293-322 995-1024(1066)
221 PF10186 Atg14: UV radiation r 21.5 6.9E+02 0.015 23.6 20.1 17 191-207 32-48 (302)
222 PF05911 DUF869: Plant protein 21.3 1.3E+03 0.028 26.6 25.4 109 251-359 594-709 (769)
223 COG4026 Uncharacterized protei 21.2 8.3E+02 0.018 24.4 10.3 73 264-350 132-204 (290)
224 TIGR01807 CM_P2 chorismate mut 21.1 2.5E+02 0.0054 22.1 5.1 34 312-345 2-35 (76)
225 PF05278 PEARLI-4: Arabidopsis 20.7 8.7E+02 0.019 24.4 17.9 18 127-144 120-138 (269)
226 PRK02793 phi X174 lysis protei 20.7 4.4E+02 0.0096 21.0 8.7 50 300-363 6-55 (72)
227 KOG0962 DNA repair protein RAD 20.4 1.6E+03 0.035 27.5 31.2 26 159-184 897-922 (1294)
228 KOG0249 LAR-interacting protei 20.2 1.4E+03 0.03 26.6 17.2 61 174-239 89-149 (916)
No 1
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=100.00 E-value=5.2e-73 Score=553.29 Aligned_cols=279 Identities=47% Similarity=0.633 Sum_probs=271.1
Q ss_pred ccccccCCCcchHHhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 017209 82 DDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQN 161 (375)
Q Consensus 82 ~~~~~~~~~~~~e~~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~ 161 (375)
++....+-.+....+|+..+++..++|.+..+.+.+++++.|++++|++|+|||+||||||++|+.|++|+++++++++.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555688888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 017209 162 LRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKL 241 (375)
Q Consensus 162 kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~ 241 (375)
+|.+|++||+++|+||+++|+++++++.+++++|..|++|||+|++||++||.||++++++++||+||++|||+++...+
T Consensus 104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~ 183 (309)
T PF09728_consen 104 KRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEA 183 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 242 VQEQSQMKLYAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL 314 (375)
Q Consensus 242 ~~Ek~q~k~l~e-------qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~ 314 (375)
.++..++..+.+ +|..|.++|.+|+.||++|++||++||+||+|||++|+|||+||++|+|+|++||||+..|
T Consensus 184 ~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 184 EQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 315 KSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 360 (375)
Q Consensus 315 K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER 360 (375)
++|||+||++||+|++||+.+.++++.+++|+++|++|||+||+||
T Consensus 264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999997
No 2
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-58 Score=448.05 Aligned_cols=272 Identities=30% Similarity=0.397 Sum_probs=254.2
Q ss_pred cchHHhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHH
Q 017209 91 ENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKF 170 (375)
Q Consensus 91 ~~~e~~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekF 170 (375)
...|-++++.+.++.|+++-+...+...++| ++++++++|+|||+|||||||+|+.+++|+....+.+++.|++.+++|
T Consensus 36 d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~f 114 (391)
T KOG1850|consen 36 DNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQF 114 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-----
Q 017209 171 QDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQ----- 245 (375)
Q Consensus 171 q~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek----- 245 (375)
|.||+||+..|.+++..+.++.++|..|++||+.|++||+.|++||++++.+++|..||..||+.......+...
T Consensus 115 qvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~ 194 (391)
T KOG1850|consen 115 QVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQ 194 (391)
T ss_pred HhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987654432211
Q ss_pred ---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 246 ---SQMK---LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 246 ---~q~k---~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
..+. +....+..+...|..|+.|+++|++||++||.||+|||++|++||+||++|+|+|++||||...|++|||
T Consensus 195 e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e 274 (391)
T KOG1850|consen 195 EKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWE 274 (391)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1121 2345678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017209 320 KSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 320 ~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~ 363 (375)
++|.+++.|+++++.+.++++.++++|++|++||||||.+|+.+
T Consensus 275 ~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel 318 (391)
T KOG1850|consen 275 NANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNEL 318 (391)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999999999999999999999876
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.24 Score=57.06 Aligned_cols=101 Identities=25% Similarity=0.387 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 017209 251 YAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 251 l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemae 330 (375)
+..++..+...-.++..++..+......++..+.....-+..++.++..+...+..++.+...+..........+.++..
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555555555555555555555555555555444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017209 331 ERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~ekLE~ 351 (375)
+...+...+..+......|+.
T Consensus 906 ~~~~~~~~~~~l~~~~~~~~~ 926 (1163)
T COG1196 906 EIEKLRERLEELEAKLERLEV 926 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.47 E-value=0.29 Score=54.73 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=10.2
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHH
Q 017209 102 RTFKSEKEFLEFTLKYQQVLAER 124 (375)
Q Consensus 102 ~~~klek~~~~~~~~~~qv~~Er 124 (375)
.+..+..++..+...+..+..+.
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~ 697 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSEL 697 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.32 E-value=0.44 Score=53.34 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 279 FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 279 FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
++..+..-..-+..+..++......+..++.+...+..+.......+..+..+...+..++..+..++
T Consensus 425 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444444444433333333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.03 E-value=0.82 Score=50.96 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=4.0
Q ss_pred hhHHHHHHHHH
Q 017209 106 SEKEFLEFTLK 116 (375)
Q Consensus 106 lek~~~~~~~~ 116 (375)
++..+..+...
T Consensus 682 l~~~~~~l~~~ 692 (1179)
T TIGR02168 682 LEEKIEELEEK 692 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.98 E-value=0.74 Score=49.58 Aligned_cols=36 Identities=36% Similarity=0.413 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 017209 325 LIELVEERERMKKQLEKSKNQKE-KLESLCRSLQAER 360 (375)
Q Consensus 325 LiemaeEr~~~~ke~e~~kkq~e-kLE~LCRaLQ~ER 360 (375)
+-+-..||+.+..++...+.... .|--.+|.|+.-+
T Consensus 387 lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elk 423 (546)
T PF07888_consen 387 LQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELK 423 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33444455555555543332221 3455555555433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.79 E-value=1.3 Score=49.47 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 017209 104 FKSEKEFLEFTLKYQQVLAERD 125 (375)
Q Consensus 104 ~klek~~~~~~~~~~qv~~Er~ 125 (375)
..++.++..+......+..+..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~ 694 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIA 694 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554443
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.48 E-value=3.4 Score=50.48 Aligned_cols=159 Identities=22% Similarity=0.282 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHHH--hHHHHHHHHHHHHHHH
Q 017209 172 DAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTL-ELQIGEL--KIKQHEEKLVQEQSQM 248 (375)
Q Consensus 172 ~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeL-E~QL~~A--Kleq~~e~~~~Ek~q~ 248 (375)
..+.++...+++.-....+...|....-.+++.+-+.-...++++.++.+.+-+ |..+... .++...+++..-....
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~ 1015 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAK 1015 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555556667788888888888888888888899998887744 3332222 1221122211111111
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 249 KLYAEQVS---QLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 249 k~l~eqv~---~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
..|..++. ...+.|...+..+.--..||+- -|.-.-+--..++...+.+.-..++.|-|...+..+.+.-+..+
T Consensus 1016 ~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~---el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1016 AKLEQQLDDLEVTLEREKRIRMELEKAKRKLEG---ELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 12333333 3445566666666644444442 22222222222777777888888888889999988888777766
Q ss_pred HHHHHHHH
Q 017209 326 IELVEERE 333 (375)
Q Consensus 326 iemaeEr~ 333 (375)
..+.....
T Consensus 1093 ~~l~k~i~ 1100 (1930)
T KOG0161|consen 1093 AQLQKQIK 1100 (1930)
T ss_pred HHHHHHHH
Confidence 55443333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.35 E-value=4 Score=49.92 Aligned_cols=186 Identities=21% Similarity=0.272 Sum_probs=114.7
Q ss_pred hHHHHHhhHhHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH-HHHHHHHH
Q 017209 156 SSEGQNLRLDLSAKFQDAIKDV---SIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQK-TLELQIGE 231 (375)
Q Consensus 156 ~~eee~kRkelsekFq~tL~dI---q~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~K-eLE~QL~~ 231 (375)
..+.+..|..|-..+..+-..| ...|....+...++.++-..|-+++..+.+.+...++..+++-+.+ -||.++.+
T Consensus 945 ~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~ 1024 (1930)
T KOG0161|consen 945 LEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDD 1024 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666664444 4444444566677788888999999999999999999999988877 58888776
Q ss_pred Hh--HHHHHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 017209 232 LK--IKQHEEK-LVQEQSQM------KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAK 302 (375)
Q Consensus 232 AK--leq~~e~-~~~Ek~q~------k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsK 302 (375)
.. +++.... ...|+.+- +.+.+.+..+...=.+|..+|.....-....+.-+..=+..-.+|.+.+..+..
T Consensus 1025 le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~ 1104 (1930)
T KOG0161|consen 1025 LEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEA 1104 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 64 3333221 22332221 223344444444444555555444333334444444444466777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 017209 303 SIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 341 (375)
Q Consensus 303 KiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~ 341 (375)
.|+.|+-+...-+.--.+..++.-++..+-..+..+++.
T Consensus 1105 ~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1105 RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666666666666666655555544
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=3.2 Score=48.69 Aligned_cols=100 Identities=9% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM--AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKK 337 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKM--sKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~k 337 (375)
.+-..+...+.............|..++.....++..+.-+ ...+..++.+...+...+...+ ...+..++..+..
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~--~~~~~~e~~~l~~ 1061 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEE 1061 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555555 4444444444444443333222 2344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 338 QLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 338 e~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
++..+..+...|.+=++.|+.+..
T Consensus 1062 ~~~~l~~~~a~l~g~~k~le~qi~ 1085 (1311)
T TIGR00606 1062 NIDLIKRNHVLALGRQKGYEKEIK 1085 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 12
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.21 E-value=2.7 Score=46.53 Aligned_cols=108 Identities=28% Similarity=0.303 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 017209 252 AEQVSQLLATEKNLRLQLTADGE----KFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 327 (375)
Q Consensus 252 ~eqv~~l~~tE~eLr~QL~~Y~e----KFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie 327 (375)
..+|..|-.++..||..|+.-.+ +.+++...|.+|-+.+...--||.+.-+.|+-||-....++...++.+..+-+
T Consensus 533 ~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~iee 612 (786)
T PF05483_consen 533 LKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34778888999999999996655 45578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 328 LVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 328 maeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
+-.+...+++++.+--+|+.-++.-+-.|+.+
T Consensus 613 LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E 644 (786)
T PF05483_consen 613 LQQENKALKKKITAESKQSNVYEIKVNKLQEE 644 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777777777777777665
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=2.9 Score=46.96 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 232 LKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKEN 311 (375)
Q Consensus 232 AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn 311 (375)
|+.++..-....|+..+.-+.+...++...+..|..++.....|..++.- -.++-|.|++-|++.+-..=.|.
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~-------~~tt~kt~ie~~~~q~e~~isei 488 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV-------DITTQKTEIEEVTKQRELMISEI 488 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee-------ccchHHHHHHHhhhHHHHHHHHH
Confidence 55554444344444444455666666777777777777766666655443 34677899999999998888999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 017209 312 AFLKSKCEKSDFTLIELVEERERMKKQLEK 341 (375)
Q Consensus 312 ~~~K~K~E~sn~aLiemaeEr~~~~ke~e~ 341 (375)
..++.+.-..+..|+.++-|++.|..++..
T Consensus 489 ~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999888754
No 14
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.76 E-value=0.75 Score=43.28 Aligned_cols=113 Identities=23% Similarity=0.277 Sum_probs=78.9
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHH---HhhHHHHHhhHhHHHHHHHHHHHH
Q 017209 101 KRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECK---RVSSEGQNLRLDLSAKFQDAIKDV 177 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~---~~~~eee~kRkelsekFq~tL~dI 177 (375)
.-+.+++++...|.+...+..++......++.+|..+ +++.+.++-|+. ++...=+.-|.+|..+|..+|-||
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~----ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKEL----EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666665554444445667777644 444455554443 334445667999999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 017209 178 SIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLEL 227 (375)
Q Consensus 178 q~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~ 227 (375)
+.+.. --|..|..||..+.+..|.++.++..++..--++-
T Consensus 138 qQk~~----------~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 138 QQKTG----------LKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 86654 35778999999999999999999999888766555
No 15
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.51 E-value=3.1 Score=41.72 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=41.3
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhh
Q 017209 99 SSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVS 156 (375)
Q Consensus 99 ~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~ 156 (375)
....+..+++++..+.+++.+++.|++....=.+|....---|+.-.+.+.-.|+...
T Consensus 34 ll~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 34 LLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566888888888899999999888777777776666666666666666654433
No 16
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=95.39 E-value=3.7 Score=41.93 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH---HHHH-H--hHHHHHHHHHHHhHHHHHHHH
Q 017209 168 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ---YAQK-L--KQKTLELQIGELKIKQHEEKL 241 (375)
Q Consensus 168 ekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h---~~k~-l--K~KeLE~QL~~AKleq~~e~~ 241 (375)
+++..+-.||..+=-+-.+.+.+.++.--++..||+.|..+|..--.. |+.+ . ++--++.|-+.+.+++++.-+
T Consensus 20 EkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl 99 (426)
T KOG2008|consen 20 EKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVL 99 (426)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543322223333344444456667777777777643222 3331 1 233467788888888888877
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 017209 242 VQEQSQMKLYAEQVS--QLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK-- 317 (375)
Q Consensus 242 ~~Ek~q~k~l~eqv~--~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K-- 317 (375)
..-+.|+-++...+. .-..-+..-..-|+...+...+...+-+++-.+-.+--..|--+.-+|+++||+|...-.|
T Consensus 100 ~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSr 179 (426)
T KOG2008|consen 100 RAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRAIKKSR 179 (426)
T ss_pred HHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 666666665544443 2233455666677777888888888888888888887788888888999999999765433
Q ss_pred ------------HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017209 318 ------------CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQ 362 (375)
Q Consensus 318 ------------~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~ 362 (375)
.+.-..++..+-.|.+..+..|.. -+.-|+-+.-.+..+|..
T Consensus 180 pYfE~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~---slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 180 PYFELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKM---SLRNLEMISDEIHEERSS 233 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHhhhh
Confidence 233444445555555555555433 455688888999999876
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.32 E-value=7.7 Score=45.14 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 265 LRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 265 Lr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
+..++..|..+.......+...-+-..++...++....++..++-+.......++..+..|
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1163)
T COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3333333333333334344333334444444444444444444444444333333333333
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.84 E-value=13 Score=45.32 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=120.0
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHH---HHHhhhhhhhhhHHHHHHHHHHHHHH
Q 017209 129 AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSI---KLEEQKDDCLSQLKENEMLRTNLKQL 205 (375)
Q Consensus 129 ~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~---~meE~~~~~~k~~eEN~~LreKLK~L 205 (375)
.++.+...+||+++.-+..|..+- ...+.. ..--+.+.+|.. .|..-.+.|.-++++|...-+|+..|
T Consensus 1178 ~L~qq~~~~~k~i~dL~~sL~~~r-------~~~q~~--a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1178 RLKQQVASLNRTIDDLQRSLTAER-------ASSQKS--AVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------Hhhccc--hhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877776551 111111 111111223333 33333466677778888888999888
Q ss_pred HHHHhhHHHH---HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 017209 206 ADQYALTEQQ---YAQKLKQKTLELQIGELKIKQHEEKLVQEQSQ---------------MKLYAEQVSQLLATEKNLRL 267 (375)
Q Consensus 206 ieQYElRE~h---~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q---------------~k~l~eqv~~l~~tE~eLr~ 267 (375)
-+..+..... |..-+.+..-+.+...|.+...++-...=+.+ ...+...|..+...=.....
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKEN 1328 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876655 33334455555555555543332222111111 11233456666666667778
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 017209 268 QLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL 328 (375)
Q Consensus 268 QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem 328 (375)
.+.....+|..|+ .+.-.--..|..+....++.+..|+.-+..+...|..-++..+++
T Consensus 1329 ~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el 1386 (1822)
T KOG4674|consen 1329 LIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELEL 1386 (1822)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999 444556788889999999999999999999999998888875443
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.30 E-value=5.1 Score=38.22 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 329 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema 329 (375)
..+...-.....|-+++..+..-|..+-.-+...-..+.++.+.|..||.+...|+.++......|..+.
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444555555555555555556666666666666666666666666666555443
No 20
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.01 E-value=14 Score=42.18 Aligned_cols=51 Identities=31% Similarity=0.380 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 301 AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 301 sKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
.+....|+.|-..+-.+.+....++.-.++....+..+++..-++.++|-+
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444455555555555555555555555555555555555555555554433
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.94 E-value=11 Score=40.83 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhc
Q 017209 349 LESLCRSLQAERKQ 362 (375)
Q Consensus 349 LE~LCRaLQ~ER~~ 362 (375)
|+.++..||.+|+.
T Consensus 380 l~~~e~~lqEer~E 393 (546)
T PF07888_consen 380 LQMLEEHLQEERME 393 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455677776653
No 22
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=17 Score=42.20 Aligned_cols=189 Identities=16% Similarity=0.177 Sum_probs=101.8
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 017209 139 RELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQ 218 (375)
Q Consensus 139 RELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k 218 (375)
+-++..++.+.++......+=.+.+. ..-+-+..+..|...|.++...+...+. -|...|+.|..|-+.+.+
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~-~~k~~~~~i~~lE~~~~d~~~~re~rlk-------dl~keik~~k~~~e~~~~ 808 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKER-ALKKCEDKISTLEKKMKDAKANRERRLK-------DLEKEIKTAKQRAEESSK 808 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhhHhHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34455566666554432222222221 2234455677777777655443322111 133345566666666777
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 219 KLKQKTLELQIGELKIKQHEEKLVQEQSQMKL-------YAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALV 284 (375)
Q Consensus 219 ~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~-------l~e-------qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~ 284 (375)
-++.++.+++...+..++.......-+.++.. |.. .+......-..+..+|+.-.+++.+.-.-|.
T Consensus 809 ~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~ 888 (1174)
T KOG0933|consen 809 ELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEIS 888 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777776666655543332222222222 222 2233333445566677777777776665554
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 017209 285 KSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM 335 (375)
Q Consensus 285 KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~ 335 (375)
..----..+..|.-.|.-.+++|+.|...+.+-+..+-+.+-.++.+..-+
T Consensus 889 ~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi 939 (1174)
T KOG0933|consen 889 GLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI 939 (1174)
T ss_pred hhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch
Confidence 444445555566666666777777777777776666666666666555433
No 23
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.73 E-value=5.2 Score=36.30 Aligned_cols=156 Identities=19% Similarity=0.305 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 193 KENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQH--EEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLT 270 (375)
Q Consensus 193 eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~--~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~ 270 (375)
-.|..++..+..+..|....|.- ...+.--|.+. ++++-. .++.+..-..+..+...+....+.-+..|..|.
T Consensus 13 l~~~~lk~~l~k~~~ql~~ke~l-ge~L~~iDFeq----Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 13 LKNITLKHQLAKLEEQLRQKEEL-GEGLHLIDFEQ----LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666655442 11222233332 232211 111211222233344445556677789999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017209 271 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK-SDFTLI-ELVEERERMKKQLEKSKNQKEK 348 (375)
Q Consensus 271 ~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~-sn~aLi-emaeEr~~~~ke~e~~kkq~ek 348 (375)
.....+..+...|..-.+.+..++.++-.......++.+.+..++.++.. ..+.|+ ++.. ....+..+++.+..
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~----~~~~~~~l~~~i~~ 163 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK----TKEEVEELRKEIKE 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877 456666 3422 22233444444444
Q ss_pred HHHHHHHHH
Q 017209 349 LESLCRSLQ 357 (375)
Q Consensus 349 LE~LCRaLQ 357 (375)
|+.-|..|+
T Consensus 164 l~rk~~~l~ 172 (177)
T PF13870_consen 164 LERKVEILE 172 (177)
T ss_pred HHHHHHHHH
Confidence 544444443
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.63 E-value=7.5 Score=37.79 Aligned_cols=216 Identities=21% Similarity=0.261 Sum_probs=119.1
Q ss_pred HHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh------
Q 017209 138 CRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYAL------ 211 (375)
Q Consensus 138 CRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYEl------ 211 (375)
-|.|..+|+.|..+......-.......+...|...|.++...++.....+....-+-..+...+..|-.+|+.
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777654333323334457788999998888888877766665544555555555555555552
Q ss_pred -HHHHHHHHHhHH--------HHHHHHHHHhH--HHHHHHHHHHHH----HH--------H-----HHHHHHHHHHHH-H
Q 017209 212 -TEQQYAQKLKQK--------TLELQIGELKI--KQHEEKLVQEQS----QM--------K-----LYAEQVSQLLAT-E 262 (375)
Q Consensus 212 -RE~h~~k~lK~K--------eLE~QL~~AKl--eq~~e~~~~Ek~----q~--------k-----~l~eqv~~l~~t-E 262 (375)
-+..+..+-+.- +|+.++..++= .-......+|.. ++ . .|...+..+... +
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye 179 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYE 179 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHH
Confidence 222233222211 12222221110 000011111110 00 0 011112222111 1
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH----HHHHHH
Q 017209 263 ----KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL----VEERER 334 (375)
Q Consensus 263 ----~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem----aeEr~~ 334 (375)
.....-=..|..++.++......++..-...+.|+..+...+..|..+...++.+.......|.++ ..++..
T Consensus 180 ~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 180 EIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 111122357888999999999999999999999999999999999999999999888777777655 344444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017209 335 MKKQLEKSKNQKEKLESLC 353 (375)
Q Consensus 335 ~~ke~e~~kkq~ekLE~LC 353 (375)
+...+..+...+..|..=|
T Consensus 260 ~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHH
Confidence 4444444444444444433
No 25
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.29 E-value=14 Score=39.80 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017209 249 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSN 287 (375)
Q Consensus 249 k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSN 287 (375)
..+.+.+..+.+.|.+.+.+|..|..++..++..|.++|
T Consensus 400 ~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~ 438 (569)
T PRK04778 400 EKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN 438 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677888999999999999999999999999999984
No 26
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.04 E-value=11 Score=38.12 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 017209 339 LEKSKNQKEKLESLCRSLQAERKQNSVGSNNSD 371 (375)
Q Consensus 339 ~e~~kkq~ekLE~LCRaLQ~ER~~~~~~~~~~~ 371 (375)
+..+.++.++|.+--|.||..-.+..+...+|.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 456889999999999999999776555444443
No 27
>PRK11637 AmiB activator; Provisional
Probab=92.94 E-value=13 Score=38.40 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=10.6
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHh
Q 017209 102 RTFKSEKEFLEFTLKYQQVLAERD 125 (375)
Q Consensus 102 ~~~klek~~~~~~~~~~qv~~Er~ 125 (375)
++..+++++.++.+++..++.+.+
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.62 E-value=32 Score=42.26 Aligned_cols=209 Identities=17% Similarity=0.200 Sum_probs=118.9
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHhH----HHHHHHhHHHHHHHHH---HHhhHHHHHHHHhhHHHHHhhHhHHHHHHH
Q 017209 100 SKRTFKSEKEFLEFTLKYQQVLAERDA----AMAVRDKLESLCRELQ---RQNKMLMDECKRVSSEGQNLRLDLSAKFQD 172 (375)
Q Consensus 100 ~k~~~klek~~~~~~~~~~qv~~Er~k----ai~~K~KLE~LCRELQ---kqNK~lKEE~~~~~~eee~kRkelsekFq~ 172 (375)
.+.+.++++++..+......+..++.+ ..+++.||+.|--.+- +.+..|.+- ...|+.
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er---------------~~~l~~ 717 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEER---------------NKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 344455666666666666666555554 4677788777755443 112222211 233333
Q ss_pred HHHHHH--------------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHhHHHHHHHHH
Q 017209 173 AIKDVS--------------IKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTE--------QQYAQKLKQKTLELQIG 230 (375)
Q Consensus 173 tL~dIq--------------~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE--------~h~~k~lK~KeLE~QL~ 230 (375)
+|.+-. ..+.--...-..+.+|+..|+.=.+.|...|+.-. .+++-+.-+..++.-.+
T Consensus 718 ~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~ 797 (1822)
T KOG4674|consen 718 TISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEM 797 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 22221111223346788888877777777766433 33333333333333222
Q ss_pred HH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 017209 231 EL--KIKQHEEKLVQEQSQM-KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKEL 307 (375)
Q Consensus 231 ~A--Kleq~~e~~~~Ek~q~-k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkL 307 (375)
.. ++++....+..+-..+ +.+.+.+..+..-...+-.+|.-|.-..+++..-+.+-=.-.+....+++.|.-++..|
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3444444444443333 34566667777777777788888888877777666666666677777888888888888
Q ss_pred HHHHHHHHHHHHhhhH
Q 017209 308 KKENAFLKSKCEKSDF 323 (375)
Q Consensus 308 EKEn~~~K~K~E~sn~ 323 (375)
++.....+.++...+.
T Consensus 878 ~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHhHHHHhhccc
Confidence 8888888777766664
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=92.27 E-value=22 Score=39.47 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=13.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHh
Q 017209 162 LRLDLSAKFQDAIKDVSIKLEE 183 (375)
Q Consensus 162 kRkelsekFq~tL~dIq~~meE 183 (375)
.+.++..+|...|..+...+..
T Consensus 449 ~~~el~~~~~~ei~~l~~~~~~ 470 (880)
T PRK03918 449 HRKELLEEYTAELKRIEKELKE 470 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777766666665553
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.83 E-value=32 Score=40.54 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 289 VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCR 354 (375)
Q Consensus 289 vF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCR 354 (375)
.....+.++..+.-.++..+|+-..++..-...+..+-+.-.+...+...+...+..-.=|.+|.|
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r 608 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMR 608 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 444555555555555555555555555555544444444444444444444444444444555544
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=30 Score=38.75 Aligned_cols=27 Identities=4% Similarity=0.181 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 017209 198 LRTNLKQLADQYALTEQQYAQKLKQKT 224 (375)
Q Consensus 198 LreKLK~LieQYElRE~h~~k~lK~Ke 224 (375)
+.+.+-.|+.|-..++..+-++|..+.
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~ 492 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERI 492 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 666666677777777777666666554
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.92 E-value=40 Score=39.86 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 017209 251 YAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 251 l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemae 330 (375)
....+..|......++....-....|.++...|.--++.....+.+|+.+.+.+-.|-.+...+..|.+.++..+.++-.
T Consensus 954 ~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~ 1033 (1293)
T KOG0996|consen 954 TEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIES 1033 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 44567778888888888888888899999999999999999999999999999999999888899999999999987755
Q ss_pred HHHHHH
Q 017209 331 ERERMK 336 (375)
Q Consensus 331 Er~~~~ 336 (375)
.-..|.
T Consensus 1034 ~~~~~~ 1039 (1293)
T KOG0996|consen 1034 KIKQPE 1039 (1293)
T ss_pred hhhhHH
Confidence 444444
No 33
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.71 E-value=21 Score=36.24 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=80.6
Q ss_pred HHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017209 138 CRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYA 217 (375)
Q Consensus 138 CRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~ 217 (375)
+|.|..+|..|..|.-....+-. .+-++-+..|.|+-.++. ..|.....-..+|..|...+..|++-.-.-.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~----~~EekEqqLv~dcv~QL~---~An~qia~LseELa~k~Ee~~rQQEEIt~Ll- 240 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETD----TYEEKEQQLVLDCVKQLS---EANQQIASLSEELARKTEENRRQQEEITSLL- 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66677777777777666554422 234566777777755554 3444445677889999999999988532221
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 017209 218 QKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK 294 (375)
Q Consensus 218 k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFK 294 (375)
.|+. .+++.-.....|... +...+......-..|..+|..+.+||.++...|.-+.+---+||
T Consensus 241 ---------sqiv--dlQ~r~k~~~~EnEe---L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 241 ---------SQIV--DLQQRCKQLAAENEE---LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred ---------HHHH--HHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 222211112222222 22233334444566888899999999999988887776555554
No 34
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.55 E-value=43 Score=39.68 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhH
Q 017209 133 KLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALT 212 (375)
Q Consensus 133 KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElR 212 (375)
.++.+-+||+.....++.+- .+-+| .-..=.|..++.+..++.+-.+...++...+..+.+.|+.+ .+|...
T Consensus 462 ~~~~~~keL~e~i~~lk~~~------~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~ 533 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEE------SELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDN 533 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55556666664444443321 11122 11233566666666666665555555556666777777766 333322
Q ss_pred -HHHHHHHHh-HHHHHHHHHHHhHHHHHHHH----H--------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 213 -EQQYAQKLK-QKTLELQIGELKIKQHEEKL----V--------QEQ-------SQMKLYAEQVSQLLATEKNLRLQLTA 271 (375)
Q Consensus 213 -E~h~~k~lK-~KeLE~QL~~AKleq~~e~~----~--------~Ek-------~q~k~l~eqv~~l~~tE~eLr~QL~~ 271 (375)
-.+..++.. .+.|+.+..++..+-....- . ++. ..+..+.+-...+.+....++.-+..
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~ 613 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEK 613 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 33555554444432221110 0 010 11112222223344556666666666
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 272 DGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 272 Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
|.....+.-..+.---+-|.+.....+...+.+++++-+......++
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~ 660 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERI 660 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666655555444444443
No 35
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.44 E-value=32 Score=37.94 Aligned_cols=214 Identities=20% Similarity=0.284 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhh----
Q 017209 113 FTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDC---- 188 (375)
Q Consensus 113 ~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~---- 188 (375)
++.-+.||+.|||..+. +|-.=-.=+|..+..+-++......+.+. -..-...+...|.++..+|.+.....
T Consensus 2 l~e~l~qlq~Erd~ya~---~lk~e~a~~qqr~~qmseev~~L~eEk~~-~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~ 77 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQ---QLKEESAQWQQRMQQMSEEVRTLKEEKEH-DISRVQELERSLSELKNQMAEPPPPEPPAG 77 (617)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcccccc
Confidence 44556788899987331 11111112333344444443332222211 11125566777888888877543211
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH------
Q 017209 189 -----LSQLKENEMLRTNLKQLADQYALTE---QQYAQKLKQKTLELQIGEL--KIKQHEEKLVQEQSQMKLYA------ 252 (375)
Q Consensus 189 -----~k~~eEN~~LreKLK~LieQYElRE---~h~~k~lK~KeLE~QL~~A--Kleq~~e~~~~Ek~q~k~l~------ 252 (375)
..+..+-..|+..+..|..+|...- +.++.+.. +.+.+|.+. .++...+.. ..+.+++.
T Consensus 78 pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~--EqEerL~ELE~~le~~~e~~---~D~~kLLe~lqsdk 152 (617)
T PF15070_consen 78 PSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ--EQEERLAELEEELERLQEQQ---EDRQKLLEQLQSDK 152 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcccc
Confidence 1122344457788888888877542 23333222 223333322 122111111 11222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDA---LVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 329 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdT---L~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema 329 (375)
.-++-...+-.+|+.||.---+.|-.+..- |+.+-....-.+ ..|.+++-.|+-+...|+-+++..+..++.+.
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~---keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVK---KELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234555667788988888888888764321 111111222222 23455666677777777777777766666665
Q ss_pred HHHHHHHHH
Q 017209 330 EERERMKKQ 338 (375)
Q Consensus 330 eEr~~~~ke 338 (375)
..+.....+
T Consensus 230 ~q~dq~~~~ 238 (617)
T PF15070_consen 230 EQRDQYLGH 238 (617)
T ss_pred HHHHHHHHH
Confidence 555443333
No 36
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.86 E-value=22 Score=37.69 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--h----HhHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 300 MAKSIKELKKENAFLKSKCEKS--D----FTLI---EL-VEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 300 MsKKiKkLEKEn~~~K~K~E~s--n----~aLi---em-aeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
+=|+|-+||-|...|..|++.- . ..|. +| ..+.+...-++..++..+++|..-|++-|.+
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999998531 1 1111 01 2344445556666777777777777665543
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.78 E-value=21 Score=34.77 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=119.2
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHh---hHHHHHhhHhHHHHHHHHHHHH
Q 017209 101 KRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRV---SSEGQNLRLDLSAKFQDAIKDV 177 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~---~~eee~kRkelsekFq~tL~dI 177 (375)
..+..+.+.+..+.....++..+++..-..-+-|..=|.+....+..+..+.... ...+-..|.++..+.++.-.+|
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 3344455666666666666666666643332222222222233333333333222 2233445555666666665555
Q ss_pred HHHHHhhhhhhhhh----------HH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 017209 178 SIKLEEQKDDCLSQ----------LK----ENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQ 243 (375)
Q Consensus 178 q~~meE~~~~~~k~----------~e----EN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~ 243 (375)
.-....| ...... .. -...|..-|..+-.+|+..-..+. .+++. +...++.........
T Consensus 134 ~fl~~~h-eeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~-----~e~e~-~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 134 EFLKQNH-EEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR-----EELEE-WYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHH-HHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhhh-hhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhh-----hhhhh-hcccccccccccccc
Confidence 4322211 111100 11 123477777777778874332222 12222 223333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 017209 244 EQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDF 323 (375)
Q Consensus 244 Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~ 323 (375)
....+....+.+..+...=..|+.+|...-.+-..+...|.- +=..|..++......|..||.+...++..+...-.
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~---le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE---LEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 112222223333333333344444444444444444433332 22345577777888889999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 017209 324 TLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 324 aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
..-++..-+..++.+|..+++=+
T Consensus 284 ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 284 EYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888888888887653
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.69 E-value=15 Score=33.22 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 267 LQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 267 ~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
..+.....-+..+.+.....++.|..++..++.....++.+.++...+...+......+..+......+......+..++
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333343444444455555555555555555555555555553333333333333333333333333333343
Q ss_pred HHHHHH
Q 017209 347 EKLESL 352 (375)
Q Consensus 347 ekLE~L 352 (375)
..++.+
T Consensus 182 ~~~~~l 187 (191)
T PF04156_consen 182 QELQEL 187 (191)
T ss_pred HHHHHH
Confidence 333333
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.54 E-value=58 Score=38.33 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 017209 262 EKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 341 (375)
Q Consensus 262 E~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~ 341 (375)
...++.++..+......+.--+ ++.....-...+++..-..+.....+...............-..-.++.....++..
T Consensus 437 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 515 (1201)
T PF12128_consen 437 LEELQEQREQLKSELAELKQQL-KNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQ 515 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544544444443322 233333334444443333333333333333333333333333333333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017209 342 SKNQKEKLESLCRSLQAER 360 (375)
Q Consensus 342 ~kkq~ekLE~LCRaLQ~ER 360 (375)
++.++..|+.=|..|+...
T Consensus 516 ~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 516 ARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666554
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=52 Score=37.62 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=101.6
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHH-
Q 017209 158 EGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQ- 236 (375)
Q Consensus 158 eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq- 236 (375)
.+-+.-..+..+|.+.|.....+++.-+.....+.-+|+.|.++...++.+...-..+|+- |..||--+.-.+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~------Lk~qLg~~~~~~~ 723 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDL------LKNQLGIISSKQR 723 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcccccchh
Confidence 3444555677888888888888888777766666679999999999888777655555442 233322111000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcHHHHHH---------------
Q 017209 237 -HEEKLVQEQSQMKLYAEQVSQ---LLATEKNLRLQLTADGEKFQQFQD-----ALVKSNEVFET--------------- 292 (375)
Q Consensus 237 -~~e~~~~Ek~q~k~l~eqv~~---l~~tE~eLr~QL~~Y~eKFeEFQd-----TL~KSNevF~t--------------- 292 (375)
..+-+++-+.+-..++....+ +...-.-|..+|+-|..--..|+. .+.+.-.+|.-
T Consensus 724 ~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e 803 (970)
T KOG0946|consen 724 DLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSE 803 (970)
T ss_pred hHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhh
Confidence 000000000111111111100 111111222233222211111111 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-------VEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNS 364 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem-------aeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~~ 364 (375)
-..-.-...+.+.+++-+..++-.+....+..+-.| +.+.....+++..++-++.-+.+++..+...|+.+.
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 111133445566666666666666666666666655 556666666677777777777788888877766553
No 41
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.33 E-value=50 Score=37.33 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhh-------HHHHHHHHhhHHH-HH-----hhHhHHHHHHHHHHHHHH
Q 017209 113 FTLKYQQVLAERDAAMAVRDKLESLCRELQRQNK-------MLMDECKRVSSEG-QN-----LRLDLSAKFQDAIKDVSI 179 (375)
Q Consensus 113 ~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK-------~lKEE~~~~~~ee-e~-----kRkelsekFq~tL~dIq~ 179 (375)
|...+++=..+=-++..+++||+.|--|+-|.|- .|+|...+.-.|= .. .|-+|-+||...=..+.+
T Consensus 467 Lk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~ 546 (762)
T PLN03229 467 LKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRA 546 (762)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHh
Confidence 3333333333333567889999999888888653 2555422211110 00 122333333322111111
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 017209 180 KLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQ 214 (375)
Q Consensus 180 ~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~ 214 (375)
+.- ++...+...-..+|.+||...+++-+.+++
T Consensus 547 ~~~--s~g~~~a~~Lk~ei~kki~e~~~~~~~kek 579 (762)
T PLN03229 547 KAL--SEKKSKAEKLKAEINKKFKEVMDRPEIKEK 579 (762)
T ss_pred hhh--cccchhhhhhhHHHHHHHHHhcccHHHHHH
Confidence 110 111112334567788999997777776665
No 42
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.89 E-value=47 Score=36.49 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 270 TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 270 ~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 349 (375)
+.|+.+--++-.-+.| =+.||+|.-.-++.|-||...+..|.+.+=....+++-.-.+.+......=+.+-.|
T Consensus 487 s~Yt~RIlEIv~NI~K-------Qk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~l 559 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRK-------QKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASL 559 (594)
T ss_pred HHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4566666665554444 356999999999999999999999999999999888887777666666666667777
Q ss_pred HHHHHHHH
Q 017209 350 ESLCRSLQ 357 (375)
Q Consensus 350 E~LCRaLQ 357 (375)
-..|-.|-
T Consensus 560 h~~c~~Li 567 (594)
T PF05667_consen 560 HENCSQLI 567 (594)
T ss_pred HHHHHHHH
Confidence 77776664
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=87.68 E-value=51 Score=36.64 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADG-----EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 316 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~-----eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~ 316 (375)
.++..+...-..|..++.... +.|..+...+...+.-+.....+++.+...+..++++...+..
T Consensus 633 ~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554443 5555555555555555555555555555555555555555433
No 44
>PRK11637 AmiB activator; Provisional
Probab=87.61 E-value=37 Score=35.00 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 279 FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 279 FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
|.+....-...-.....+...+......++.+...|...-..-+..+..+..+......++..+.....+|..++..|+.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444455555555555555555555555566666666666777777788888888888887765
Q ss_pred H
Q 017209 359 E 359 (375)
Q Consensus 359 E 359 (375)
+
T Consensus 255 ~ 255 (428)
T PRK11637 255 E 255 (428)
T ss_pred H
Confidence 3
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=87.28 E-value=54 Score=36.57 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 017209 254 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 308 (375)
Q Consensus 254 qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 308 (375)
.+..+..+-..|+..+..|...+++....+..-.+-+..+..++..+...+.+|+
T Consensus 538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666665555555544445555555555555555554
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.91 E-value=70 Score=37.49 Aligned_cols=214 Identities=20% Similarity=0.177 Sum_probs=113.1
Q ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhH------HHHHH
Q 017209 98 KSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDL------SAKFQ 171 (375)
Q Consensus 98 ~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkel------sekFq 171 (375)
+..-+...|++++.+++.++..++.+++.+=..-++++..-|+|+.+...++-.......+=-..+... +..++
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~ 737 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLE 737 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhH
Confidence 445667889999999999999999999999888899999999999998888777654333211111100 01111
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Q 017209 172 DAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGEL--KIKQHEEKLVQEQSQMK 249 (375)
Q Consensus 172 ~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~A--Kleq~~e~~~~Ek~q~k 249 (375)
....+|...+.+- .+.....++++.=+++-+ .+..+++..++.- +|+....++......++
T Consensus 738 ~l~~ei~~~~~eI--------e~~~~~~e~l~~e~e~~~---------~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 738 DLAREIKKKEKEI--------EEKEAPLEKLKEELEHIE---------LEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1111222221111 111111111111111111 1222233222222 22222222222222111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 250 ----LYAEQVSQLLATEKNLRLQL-------TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 250 ----~l~eqv~~l~~tE~eLr~QL-------~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
.+........+.|..++.-| ..|...=...++...|.+..|..-+.|++.|.+-...+-+++.-+++.+
T Consensus 801 ~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i 880 (1074)
T KOG0250|consen 801 LREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQI 880 (1074)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHH
Confidence 12222223333444443211 1122233457788889999998888899999888888888888888876
Q ss_pred HhhhHhHHHH
Q 017209 319 EKSDFTLIEL 328 (375)
Q Consensus 319 E~sn~aLiem 328 (375)
..+-..+.++
T Consensus 881 ~~~ee~~~~~ 890 (1074)
T KOG0250|consen 881 QMCEESLGEL 890 (1074)
T ss_pred HHHHHhcchH
Confidence 6555555444
No 47
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.66 E-value=0.2 Score=54.84 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
+.|..-...|+.||++|..+... +..|-.+..-...++++...++.+++.++++...|..
T Consensus 250 k~l~~ql~~i~~LE~en~~l~~E----lk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~ 309 (722)
T PF05557_consen 250 KELKEQLAHIRELEKENRRLREE----LKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAE 309 (722)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788999999888764 3455556666677778888888888888877665544
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.28 E-value=8.3 Score=41.09 Aligned_cols=70 Identities=23% Similarity=0.391 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 291 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV-EERERMKKQLEKSKNQKEKLESLCRSLQAER 360 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema-eEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER 360 (375)
-..+.+|..+.+..+.|-+||..|+.|-...+..|-.-+ .++..+.++.+.++.+..+|.++...|+.+-
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999999888888887665 6688889999999999999999999998765
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=63 Score=36.28 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 257 QLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 257 ~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
.+.+.=..|+.+++-+..++.+++..+.. -.-|++.+.++.++||-|...+++|.+.....-
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e-------~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAE-------LELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444556666666666666666654443 346889999999999999999999987765543
No 50
>PRK02224 chromosome segregation protein; Provisional
Probab=85.66 E-value=65 Score=35.94 Aligned_cols=45 Identities=9% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 273 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 317 (375)
Q Consensus 273 ~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K 317 (375)
.+.|+.+.+.+...+..+..+..+++.+......|..+...+...
T Consensus 645 ~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555656666666666666555555555555555544444433
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.39 E-value=88 Score=37.16 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 017209 276 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL 328 (375)
Q Consensus 276 FeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem 328 (375)
+.++...|...+........+++..+..|+.|.++...+...-.....+|--+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666777777777888888887777777776666666555544
No 52
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.81 E-value=4.7 Score=40.59 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
..+...|..-.+...+.++.|..-++-...++.+.+........|+.+......|.+.+..-+-.+..|+.+|...+..+
T Consensus 224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Confidence 34445556666777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017209 343 KNQKEKLESLC 353 (375)
Q Consensus 343 kkq~ekLE~LC 353 (375)
..+...|-+=|
T Consensus 304 ~~~~~~l~GD~ 314 (344)
T PF12777_consen 304 EEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhcccHHHH
Confidence 99988887644
No 53
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.38 E-value=92 Score=36.55 Aligned_cols=50 Identities=28% Similarity=0.364 Sum_probs=28.5
Q ss_pred HhhhhhhhH--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHH
Q 017209 95 TRRKSSKRT--FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDE 151 (375)
Q Consensus 95 ~~r~~~k~~--~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE 151 (375)
..++--+|. --++.+.+++.++.+.+..|||- .+.|++. |+.+|-++.-.
T Consensus 286 QLq~lrarse~~tleseiiqlkqkl~dm~~erdt---dr~ktee----L~eEnstLq~q 337 (1195)
T KOG4643|consen 286 QLQKLRARSEGATLESEIIQLKQKLDDMRSERDT---DRHKTEE----LHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh---HHHHHHH----HHHHHHHHHHH
Confidence 334444444 33667778888888888777763 3455553 34444444433
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.98 E-value=42 Score=31.61 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 017209 165 DLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQE 244 (375)
Q Consensus 165 elsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~E 244 (375)
+|......+..+|..|....- ..|-.|-.-||.=|..-..++.+..+.|..-..|-
T Consensus 2 ~L~~~He~af~~iK~YYndIT-------~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN----------------- 57 (201)
T PF13851_consen 2 ELMKNHEKAFQEIKNYYNDIT-------LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQEN----------------- 57 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 355566667778887776543 34444555555555444444444443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 245 QSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQ---DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKS 321 (375)
Q Consensus 245 k~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQ---dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~s 321 (375)
+.+.+-+..+...-.+|+.+|..|..-...++ ..+.....-+...+-|-+-+.-+..+|+.|...|..||+.+
T Consensus 58 ----~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 58 ----KRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred ----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444455555677777777766555443 44555566777788888888899999999999999999866
Q ss_pred hHhHHHHHHHH
Q 017209 322 DFTLIELVEER 332 (375)
Q Consensus 322 n~aLiemaeEr 332 (375)
=..+-..+.-+
T Consensus 134 i~evqQk~~~k 144 (201)
T PF13851_consen 134 IQEVQQKTGLK 144 (201)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 55
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.92 E-value=1e+02 Score=36.08 Aligned_cols=226 Identities=17% Similarity=0.221 Sum_probs=143.9
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHH--HhhHHHHHhhHh-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 017209 128 MAVRDKLESLCRELQRQNKMLMDECK--RVSSEGQNLRLD-LSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQ 204 (375)
Q Consensus 128 i~~K~KLE~LCRELQkqNK~lKEE~~--~~~~eee~kRke-lsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~ 204 (375)
..-+.|.+.|--.+....+.|.+|-. ......+..|+. =-+=|...+++|...|+.-...+....+++..+...|..
T Consensus 183 ~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~ 262 (1200)
T KOG0964|consen 183 KQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDK 262 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34467777777777777777665543 223333444444 345677889999999987666666656666655555544
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 205 LADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLV-----QEQS----QMKLYAEQVSQLLATEKNLRLQLTADGEK 275 (375)
Q Consensus 205 LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~-----~Ek~----q~k~l~eqv~~l~~tE~eLr~QL~~Y~eK 275 (375)
..+--+. |.. .-++|+..|...+-+.++-.+. ..+. +++.++.++..=.++....-..|+-|.++
T Consensus 263 ~~d~~~~----~~~--~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~k 336 (1200)
T KOG0964|consen 263 VEDESED----LKC--EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDK 336 (1200)
T ss_pred HHHHHHH----HHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 4333322 222 2345665554444322221111 1111 23345667766677788888999999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH-HHHhhhHhHHHHHHHHHHH
Q 017209 276 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKK-------------------ENAFLKS-KCEKSDFTLIELVEERERM 335 (375)
Q Consensus 276 FeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEK-------------------En~~~K~-K~E~sn~aLiemaeEr~~~ 335 (375)
..+-++-|.+----|.....|=....+.|..|+. |...|-+ -.+..+..|.+.-+-...+
T Consensus 337 i~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~l 416 (1200)
T KOG0964|consen 337 IEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENIL 416 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999999999999999999997 5556633 3577777777776666666
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHH
Q 017209 336 KKQLEKS----KNQKEKLESLCRSLQAE 359 (375)
Q Consensus 336 ~ke~e~~----kkq~ekLE~LCRaLQ~E 359 (375)
..+++.+ .+.++.+..|-+.+...
T Consensus 417 q~e~~~~e~~l~~~~e~i~~l~~si~e~ 444 (1200)
T KOG0964|consen 417 QKEIEDLESELKEKLEEIKELESSINET 444 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 6666554 34455566666655533
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.81 E-value=66 Score=33.70 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 289 VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 289 vF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
.....+..++........|+.+...|.......+..|
T Consensus 345 ~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 345 KISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 3333333444444444444444444444433333333
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.22 E-value=1.3e+02 Score=36.69 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 311 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLC 353 (375)
Q Consensus 311 n~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LC 353 (375)
...+....|..+...-...+.|..+..+.+.+..++..|.++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444455555555555666666666666666666655554
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.17 E-value=12 Score=34.57 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=52.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 277 QQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSL 356 (375)
Q Consensus 277 eEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaL 356 (375)
.++..-|...|.-....+.++......|..|+.+...++.++......|-++..-...+..++..+.-+...|+.=++.|
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777788888888888888888888888888888888887777888888888888888888888888
Q ss_pred HHHhhc
Q 017209 357 QAERKQ 362 (375)
Q Consensus 357 Q~ER~~ 362 (375)
+.|...
T Consensus 171 ~~En~~ 176 (194)
T PF08614_consen 171 EEENRE 176 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888554
No 59
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.39 E-value=70 Score=32.39 Aligned_cols=192 Identities=23% Similarity=0.325 Sum_probs=111.2
Q ss_pred HHHHHhHHHHHHHHHHHhhHHH---HHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhh-----hhh--------
Q 017209 128 MAVRDKLESLCRELQRQNKMLM---DECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDC-----LSQ-------- 191 (375)
Q Consensus 128 i~~K~KLE~LCRELQkqNK~lK---EE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~-----~k~-------- 191 (375)
..-|+.|..=.||+-...+.++ ++....+.+-.++|.++.++.+....++-...+..+..+ ...
T Consensus 40 ~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~L 119 (294)
T COG1340 40 AEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERL 119 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 3334444444444443333332 333344555677788888887776666655444332110 000
Q ss_pred ----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 192 ----------LKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIK--QHEEKLVQEQSQMKLYAEQVSQLL 259 (375)
Q Consensus 192 ----------~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKle--q~~e~~~~Ek~q~k~l~eqv~~l~ 259 (375)
..+-..|-.+++.|-.+|+.+......-.+.++|-.++...+-. ...+....-..++..|.+++-.+-
T Consensus 120 e~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~ 199 (294)
T COG1340 120 EKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLF 199 (294)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333466777777777777666555444444444433333221 111112222233344555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
..=.++|...+.|.++|-++..-..-=++-|.....++....+.|+.|.......+.+-.
T Consensus 200 ~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~ 259 (294)
T COG1340 200 EEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK 259 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999988888888888888888888888888877777666655543
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.82 E-value=1.1e+02 Score=33.56 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 268 QLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL 314 (375)
Q Consensus 268 QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~ 314 (375)
.+..|.+++.+.+..+.+.+.-......+++...+.+..++++...+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 61
>PRK01156 chromosome segregation protein; Provisional
Probab=78.77 E-value=1.2e+02 Score=34.14 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 017209 269 LTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 327 (375)
Q Consensus 269 L~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie 327 (375)
++...++|..+.+.+..-..-+..++.+++.+...+..++.....++.+++.....+.+
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 669 LKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777766666666666555444443
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.59 E-value=1.5e+02 Score=35.04 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=16.6
Q ss_pred HHHHHHHHhhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 276 FQQFQDALVKSNEVF-ETFKQEIEKMAKSIKELKKENAFL 314 (375)
Q Consensus 276 FeEFQdTL~KSNevF-~tFKkEMEKMsKKiKkLEKEn~~~ 314 (375)
.+....++.+-+.-| .+...+.+++..+++.|+++...+
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 344444444444444444444433
No 63
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.52 E-value=0.66 Score=52.26 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017209 300 MAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM-------KKQLEKSKNQKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 300 MsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~-------~ke~e~~kkq~ekLE~LCRaLQ~ER~~~ 363 (375)
+.|+.+++++....|+.+++.....+-....+...+ ...++.+.-+++.|+.--+.|+.+-..+
T Consensus 375 LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl 445 (859)
T PF01576_consen 375 LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDL 445 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 347888899999999999877666665544443333 3334444445555555555666665443
No 64
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.28 E-value=84 Score=32.11 Aligned_cols=85 Identities=27% Similarity=0.347 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 017209 275 KFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE-----LVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 275 KFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie-----maeEr~~~~ke~e~~kkq~ekL 349 (375)
.+..+...|..|.+-=.....|++.+..++..+..++..++.+.......-.. ...+|..+-.+++.++.++..|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 55667777788888888888888888888888888888887765432221111 1377777778888877777777
Q ss_pred HHHHHHHHHH
Q 017209 350 ESLCRSLQAE 359 (375)
Q Consensus 350 E~LCRaLQ~E 359 (375)
+.=.+++-.|
T Consensus 146 e~d~qs~lDE 155 (319)
T PF09789_consen 146 ERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHH
Confidence 7666655444
No 65
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.60 E-value=91 Score=32.16 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 197 MLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKF 276 (375)
Q Consensus 197 ~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF 276 (375)
.|..-+..-++.-+.||.+++.++.+---++.-..++|...+++..+-..-+..+...+..+...-...+.++..=+...
T Consensus 245 kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 245 KLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 37778888889999999999999988887776666666666554432222222222222222222222222222211111
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 017209 277 QQFQDALVKSNEVFETFKQEIEKMAKSIK 305 (375)
Q Consensus 277 eEFQdTL~KSNevF~tFKkEMEKMsKKiK 305 (375)
.. ...|.+-.......|.||-.|.=+|-
T Consensus 325 tD-~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 325 TD-GSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11 02233444566677777777665553
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.55 E-value=81 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHhhHHHHHH
Q 017209 131 RDKLESLCRELQRQNKMLMDEC 152 (375)
Q Consensus 131 K~KLE~LCRELQkqNK~lKEE~ 152 (375)
-+=++--||||.+....-+.-.
T Consensus 70 Lely~~~c~EL~~~I~egr~~~ 91 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIF 91 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677999988876555443
No 67
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.50 E-value=0.74 Score=50.54 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH---hHHHHHH---
Q 017209 166 LSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGEL---KIKQHEE--- 239 (375)
Q Consensus 166 lsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~A---Kleq~~e--- 239 (375)
-.+.|..-|.++...+.+.......+..++..|.+++..+....+.-....+. ++...=+..+..+ .+...-.
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~-L~e~~eeL~~~~~~~~~l~~~~~~~~ 442 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS-LRETNEELECSQAQQEQLSQSGEESS 442 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccccccccccccccc
Confidence 33456666777777777666656666678888888888877665532222211 1111001111111 0000000
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 240 ----KLVQEQSQMKLYAEQVSQLLATEKNLRLQLTA-DGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL 314 (375)
Q Consensus 240 ----~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~-Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~ 314 (375)
....|-. -..+.+.+..|...-+.|+..+.. ..+++..++.-|..+|.....+..+......++..|+.+...+
T Consensus 443 ~~~~~l~~El~-~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 443 SSGDNLSAELN-PAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhcc-chHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 011233444444445566554433 3667777888888888888888777777777777777766666
Q ss_pred HHHH
Q 017209 315 KSKC 318 (375)
Q Consensus 315 K~K~ 318 (375)
....
T Consensus 522 q~~l 525 (713)
T PF05622_consen 522 QKSL 525 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 68
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.19 E-value=0.76 Score=51.78 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHH----HHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 017209 129 AVRDKLESLCRELQRQNKMLMDEC----KRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQ 204 (375)
Q Consensus 129 ~~K~KLE~LCRELQkqNK~lKEE~----~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~ 204 (375)
-.|.+||+---.|+..+..+.... +.+...+.. .-.+...|.+++.++++.......+......|...+..
T Consensus 145 k~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~-----~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~e 219 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK-----RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSE 219 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655555555544444333 222222222 34567777888888877655555555566677778888
Q ss_pred HHHHHhhHHHHHHHHHhHH-HHHHHHHHHhH
Q 017209 205 LADQYALTEQQYAQKLKQK-TLELQIGELKI 234 (375)
Q Consensus 205 LieQYElRE~h~~k~lK~K-eLE~QL~~AKl 234 (375)
|..+++--+..+..+.+.+ .|+.||.+++=
T Consensus 220 L~~qLee~e~~~~~l~r~k~~L~~qLeelk~ 250 (859)
T PF01576_consen 220 LTRQLEEAESQLSQLQREKSSLESQLEELKR 250 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8888887777777776654 57888877763
No 69
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=76.79 E-value=20 Score=34.03 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.2
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhh
Q 017209 118 QQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDC 188 (375)
Q Consensus 118 ~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~ 188 (375)
.-...|+.+++.+.+-|+++-++|+|+---+|+...+.....-+--+..++.|+.+..+|.++.--.+..+
T Consensus 76 ~~~~~e~~k~~~LAr~le~~~q~L~k~daf~Ke~larlEen~~e~ykv~~eqy~~aaE~VekrFk~~~~~p 146 (192)
T KOG4083|consen 76 QSSAEEGEKAARLARDLEEKSQELKKQDAFYKEQLARLEENSSEFYKVTTEQYQKAAERVEKRFKAYHREP 146 (192)
T ss_pred hhHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 34557899999999999999999999999999988777666666677889999999999999887555433
No 70
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.72 E-value=1.2e+02 Score=33.16 Aligned_cols=277 Identities=17% Similarity=0.156 Sum_probs=119.8
Q ss_pred cccccccccccccccccccccCCCcchHHhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhh
Q 017209 67 EAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNK 146 (375)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK 146 (375)
......+|.++.++-...-+.-. +..-.+-+......+|.-++-++..++....+++.-+-.=.+=++..--+|+-...
T Consensus 80 ~~~ts~ik~~ye~El~~ar~~l~-e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 80 GRETSGIKAKYEAELATARKLLD-ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred cCCCcchhHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 33446677777776655544421 22222333444455566666666666665554444322111111222223333333
Q ss_pred HHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH-
Q 017209 147 MLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTL- 225 (375)
Q Consensus 147 ~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeL- 225 (375)
.++-.......+...-+.+ .......|..|-..++..---+.....-...|.+.|..+...|+..-........ .+.
T Consensus 159 ~~krr~~~le~e~~~Lk~e-n~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~-rd~t 236 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAE-NSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR-RDTT 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh-hccc
Confidence 3333332222222222222 2344555666655555433222222233445666666666666532222111111 111
Q ss_pred -HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH--
Q 017209 226 -EL-QIGELKIKQHEEKLVQEQSQMKLYAEQVSQL-LATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM-- 300 (375)
Q Consensus 226 -E~-QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l-~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKM-- 300 (375)
.. -+-..+|+.+. +.+..+.... .....++. ..|..|..+.+..-...|....-.+.|+..|
T Consensus 237 ~~~r~~F~~eL~~Ai----------~eiRaqye~~~~~nR~diE---~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~ 303 (546)
T KOG0977|consen 237 ADNREYFKNELALAI----------REIRAQYEAISRQNRKDIE---SWYKRKIQEIRTSAERANVEQNYAREELRRIRS 303 (546)
T ss_pred ccchHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhccccchhHHHHHHHHHHHh
Confidence 00 01111222111 1111111110 01111111 2467777777766666666666666666665
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 301 -----AKSIKELKKENAFLKSKCEKSDFTLIE-----------LVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 301 -----sKKiKkLEKEn~~~K~K~E~sn~aLie-----------maeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
..++-.||.-|..+-.+.+..+-.|.+ --.+-..+..++..+-..+++|-..--+|+.|
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 456666666666666666555444322 12222333334444444444444444566666
No 71
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.45 E-value=1.7e+02 Score=34.63 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017209 131 RDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYA 210 (375)
Q Consensus 131 K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYE 210 (375)
|..|+.+--|||..+..+.+.-=... +-+| -...+..++++++.+|++..+.-. ..|..++-.=|..|+
T Consensus 703 k~~l~~~~~El~~~~~~i~~~~p~i~---~i~r--~l~~~e~~~~~L~~~~n~ved~if------~~f~~~igv~ir~Ye 771 (1141)
T KOG0018|consen 703 KRSLEQNELELQRTESEIDEFGPEIS---EIKR--KLQNREGEMKELEERMNKVEDRIF------KGFCRRIGVRIREYE 771 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhcCeeeehHH
Confidence 34444445555555555552221211 1111 234555556666555553322111 113333333378898
Q ss_pred hHHHHHHHHHh--HHHHHHHHHHHhHH
Q 017209 211 LTEQQYAQKLK--QKTLELQIGELKIK 235 (375)
Q Consensus 211 lRE~h~~k~lK--~KeLE~QL~~AKle 235 (375)
-++. ...+- ..+++-|++.+.++
T Consensus 772 e~~~--~~~~a~k~~ef~~q~~~l~~~ 796 (1141)
T KOG0018|consen 772 EREL--QQEFAKKRLEFENQKAKLENQ 796 (1141)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 8877 33333 34555555555443
No 72
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.97 E-value=72 Score=32.07 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 017209 252 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEE 331 (375)
Q Consensus 252 ~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeE 331 (375)
...+..+..+|..|...|.....-..++. +|+..+......|+.+-...-.-+-.-...+..+.++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~--------------~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELD--------------QELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544433333322 3444444444444443333333445566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017209 332 RERMKKQLEKSKNQKEKLESL 352 (375)
Q Consensus 332 r~~~~ke~e~~kkq~ekLE~L 352 (375)
+..+..++.....++++|.+.
T Consensus 115 ~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888653
No 73
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.16 E-value=0.93 Score=49.76 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 255 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 255 v~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
+..+..+=..|+.+...|.+.-..+.+-|.+++. ++..|+...+.|-.|+.+......+.+.....+
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARA----LKSQLEEYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888889999998888888888764 667777766666666666666655555443333
No 74
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.48 E-value=3.3 Score=45.54 Aligned_cols=239 Identities=21% Similarity=0.260 Sum_probs=17.2
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHh--hHHHHHhhHhHHHHHHHH-----
Q 017209 101 KRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRV--SSEGQNLRLDLSAKFQDA----- 173 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~--~~eee~kRkelsekFq~t----- 173 (375)
.++..|++.+..+..+...+..-+...-+++....+|-+-|++.-....+-.... ...-+..|..|..-.+..
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~ 336 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFD 336 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3455566666666666666665555555556555555555544322111111100 111234455565533321
Q ss_pred -HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Q 017209 174 -IKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGEL--KIKQHEEKLVQEQSQMKL 250 (375)
Q Consensus 174 -L~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~A--Kleq~~e~~~~Ek~q~k~ 250 (375)
-.+|...+. .+..++..|.+++..+.-.....+..+.. |+..+..+ .+.........-......
T Consensus 337 sPe~l~~~l~-------~lq~~~~~L~ek~g~~~~~~~~l~~~~~~------Le~e~~~l~~~~~~l~~~~~~~~~~~~R 403 (722)
T PF05557_consen 337 SPEDLARALV-------QLQQENASLTEKLGSLQSELRELEEEIQE------LEQEKEQLLKEIEELEASLEALKKLIRR 403 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222221 12345555666666655555444333322 22111111 111111111111112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 251 YAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKS-------------NEVFETFKQEIEKMAKSIKELKKENAFLKSK 317 (375)
Q Consensus 251 l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KS-------------NevF~tFKkEMEKMsKKiKkLEKEn~~~K~K 317 (375)
+..+..-+.+.-.-||.||..|..- ..+...+ ...+..++.+|+. .+..|+.+....+..
T Consensus 404 Lerq~~L~~kE~d~LR~~L~syd~e----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~---~l~~l~~~l~~~k~~ 476 (722)
T PF05557_consen 404 LERQKALATKERDYLRAQLKSYDKE----ETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEA---QLEELEEELSEQKQR 476 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----hccccCchhHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc
Confidence 4445555566677899999998542 2222333 3345555555554 455555555444443
Q ss_pred HHhh--------------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 318 CEKS--------------DFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 318 ~E~s--------------n~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
.... +..+....++...+..++..+...+.+|+.-...|..+
T Consensus 477 ~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 477 NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 22122223333345555555555555555555555544
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.59 E-value=51 Score=30.47 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 254 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 254 qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
.+..+...=..|+..+..+.+-..+...++.--++=+.+..-+..-+..++.+|++||..|-.||
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666777777777777777777777788888999999999999999998
No 76
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.76 E-value=23 Score=27.47 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEK 320 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~ 320 (375)
|-.|++++.|.+.+++++...+..|..+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5689999999999999999999998643
No 77
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=72.53 E-value=94 Score=29.89 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH---HHHHHHHHHHHHH
Q 017209 264 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE---LVEERERMKKQLE 340 (375)
Q Consensus 264 eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie---maeEr~~~~ke~e 340 (375)
+|=.-|.-|.+.|+..-.+|.+-++.+.+-.+=-+.|..-.+.|+.=|.....-.+.+++.+-. +++.-..+..|++
T Consensus 103 ~l~esl~~~i~~~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~ 182 (202)
T TIGR03513 103 TLMQSLGNGINNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEME 182 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788889999999999999999888888888888888888899998888877775544 4677888899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017209 341 KSKNQKEKLESLCRSL 356 (375)
Q Consensus 341 ~~kkq~ekLE~LCRaL 356 (375)
.+.+.+..|.++..-|
T Consensus 183 kLa~NL~sLN~VYg~M 198 (202)
T TIGR03513 183 KMAANLTSLNEVYGGM 198 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 78
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.57 E-value=1.5e+02 Score=31.82 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 017209 254 QVSQLLATEKNLRLQLTADGE-KFQQ---FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 329 (375)
Q Consensus 254 qv~~l~~tE~eLr~QL~~Y~e-KFeE---FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema 329 (375)
++......-..|+.+|..|.. +-.. -..........+.+.+.|++.+...+.+...|...++...+.....|-..-
T Consensus 243 kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K 322 (522)
T PF05701_consen 243 KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEK 322 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555667777777776 3332 122333334457777788888888887777777777777766666665444
Q ss_pred HHHHHHHH
Q 017209 330 EERERMKK 337 (375)
Q Consensus 330 eEr~~~~k 337 (375)
.+-..+.+
T Consensus 323 ~el~~lke 330 (522)
T PF05701_consen 323 EELERLKE 330 (522)
T ss_pred HHHHHHHH
Confidence 44433333
No 79
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.38 E-value=52 Score=26.47 Aligned_cols=65 Identities=26% Similarity=0.381 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 274 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 274 eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
+=|++++.-+...=++++..+.|++....+...|..++..++...+. +..++..|...+..+-.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~-------L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ-------LKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 34566666666666677777777777666666655555555444332 225555555555444333
No 80
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.96 E-value=2e+02 Score=32.91 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=12.7
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHh
Q 017209 123 ERDAAMAVRDKLESLCRELQRQN 145 (375)
Q Consensus 123 Er~kai~~K~KLE~LCRELQkqN 145 (375)
.++-+..+|.|++.+--+|.+-.
T Consensus 278 ~~s~~~~mK~k~d~~~~eL~rk~ 300 (775)
T PF10174_consen 278 YKSHSLAMKSKMDRLKLELSRKK 300 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33334556666666666665544
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.95 E-value=2.3e+02 Score=33.62 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
+......|..++.....++.++..-+..-..-|..-+.+++..-+.....-.+.....++....-..+
T Consensus 814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33456677777777777777777777777777777777666666666655555555555444333333
No 82
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.95 E-value=2.4e+02 Score=33.92 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHH
Q 017209 128 MAVRDKLESLCRELQRQNKMLMDECK 153 (375)
Q Consensus 128 i~~K~KLE~LCRELQkqNK~lKEE~~ 153 (375)
...+.+|+.+-|.|+++-+-++..+.
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555554443
No 83
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=75 Score=28.10 Aligned_cols=45 Identities=33% Similarity=0.433 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 017209 106 SEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKR 154 (375)
Q Consensus 106 lek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~ 154 (375)
+++++.....+|+++|+++.+-+..|.|||.= || +|+.+.+|.-.
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~q---L~-Enk~V~~Eldl 47 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQ---LQ-ENKIVLEELDL 47 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hhHHHHHHHHH
Confidence 67888999999999999999999999999863 32 47777777543
No 84
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.49 E-value=88 Score=31.31 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 290 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 290 F~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
-..-+.||+.+-..+++.|++...|+.|...+-.-|..+-.+++.+.+-+.-++-+++++.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445689999999999999999999999999999999999999999999888887877764
No 85
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.41 E-value=2.1e+02 Score=33.16 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQE----IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 333 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkE----MEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~ 333 (375)
+.+.+.+|+..=...++-..+|...+.--++..++.|+- |-.-...++-|+-+|..+++-......+|++---...
T Consensus 268 ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~e 347 (1265)
T KOG0976|consen 268 IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAE 347 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666677776777777777877777777777777763 3333456666777777777766666666665433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017209 334 RMKKQLEKSKNQKEKLESLCR 354 (375)
Q Consensus 334 ~~~ke~e~~kkq~ekLE~LCR 354 (375)
-+.+.+..+.++-+.+..=.|
T Consensus 348 gfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 348 GFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred chhHHHHHHHHHHHHHHHhHH
Confidence 333334444444433333333
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=2.1e+02 Score=33.03 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Q 017209 301 AKSIKELKKENAFLKSKCEKSDFTLIELVEERER 334 (375)
Q Consensus 301 sKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~ 334 (375)
++..+.+|++...++.|+---|..+.+..+++..
T Consensus 847 a~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~s 880 (970)
T KOG0946|consen 847 ANELKLIEQKLSNLQEKIKFGNNLIKELTEKISS 880 (970)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Confidence 4555666666666666655555555444444333
No 87
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.45 E-value=58 Score=28.62 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS---KNQKEKLESLCRSLQA 358 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~---kkq~ekLE~LCRaLQ~ 358 (375)
.-+++|+..|+.+|-|...++.........--.+.+|-..+-...+.+ ...+..|+.-+..|+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999888887776666666655555554444333 3344455555555544
No 88
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.14 E-value=1.8e+02 Score=31.86 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHH--------HHHHHHhhHHH-HHhhHhHHHHHHHHHHHHH
Q 017209 108 KEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKML--------MDECKRVSSEG-QNLRLDLSAKFQDAIKDVS 178 (375)
Q Consensus 108 k~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~l--------KEE~~~~~~ee-e~kRkelsekFq~tL~dIq 178 (375)
++...+-..+..+-++++..+++|..++.=|..|-....-+ .|+.....++- -..|..-..+++.+|.||-
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiR 255 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIR 255 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 33333444444455666677788877777666665444333 33333322222 3556667778888888888
Q ss_pred HHHHhhhhhh
Q 017209 179 IKLEEQKDDC 188 (375)
Q Consensus 179 ~~meE~~~~~ 188 (375)
++.+.+...+
T Consensus 256 aqye~~~~~n 265 (546)
T KOG0977|consen 256 AQYEAISRQN 265 (546)
T ss_pred HHHHHHHHHh
Confidence 8888665444
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.83 E-value=1e+02 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhcHHH
Q 017209 275 KFQQFQDALVKSNEV 289 (375)
Q Consensus 275 KFeEFQdTL~KSNev 289 (375)
.-.+.++.+..|+..
T Consensus 119 ~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 119 RTAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.81 E-value=80 Score=34.70 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 296 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKE 347 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~e 347 (375)
|.++-..++..|++....++.=.-+....+..|-.....+.+.++.++..++
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333333333333333333333333333333
No 91
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=68.59 E-value=51 Score=26.64 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 299 KMAKSIKELKKENAFLKSKCE--------KSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 299 KMsKKiKkLEKEn~~~K~K~E--------~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
.....|.+|.|||-.||-|.= .++...-++..+...++-++..+++.+..+..+.+.++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999988852 344455567778888888888888888888777766653
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.89 E-value=63 Score=26.01 Aligned_cols=68 Identities=31% Similarity=0.356 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSL 356 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaL 356 (375)
|+++|...-.=+....-.|.-|.-|+..++.+..........+..+...+..+...+... |.+|..-|
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r---l~~LL~kl 69 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER---LRSLLGKL 69 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 678999999999999999999999999999998888888888888888888777665554 44444433
No 93
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.55 E-value=2.6e+02 Score=32.93 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 017209 274 EKFQQFQDALVKSNE-VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEE 331 (375)
Q Consensus 274 eKFeEFQdTL~KSNe-vF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeE 331 (375)
+-..++++-|.-||. +-.-+++|++..+-.++.|++....-..-.-.-+++|++.-+=
T Consensus 475 Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel 533 (1243)
T KOG0971|consen 475 EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL 533 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445566777777774 6677899999998888888887766655555555666654443
No 94
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.07 E-value=1.2e+02 Score=29.04 Aligned_cols=96 Identities=18% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHhHHH
Q 017209 252 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKS----DFTLIE 327 (375)
Q Consensus 252 ~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~s----n~aLie 327 (375)
..-+..+..-|..|+..+..|.+++..-+ .-|..+|.-.+ .++..--.+....++++..- ++.|=.
T Consensus 103 K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e-------qry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 103 KEVIEGYKKNEETLKKCIEEYEERLKKEE-------QRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34456667777788877777777766533 34444443222 11111112222222222221 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 328 LVEERERMKKQLEKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 328 maeEr~~~~ke~e~~kkq~ekLE~LCRaLQ 357 (375)
.--...-+...++...+.++-|-.||--|=
T Consensus 173 ~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 173 EEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345566677777888888999997763
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.25 E-value=99 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 267 LQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK 320 (375)
Q Consensus 267 ~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~ 320 (375)
-.|..--+-++.....|.-+++-+..--.-++.+..+++.||-+...|-.|++.
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333343344444444444444444444444444444444443
No 96
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.05 E-value=85 Score=26.50 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 215 QYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQ 280 (375)
Q Consensus 215 h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQ 280 (375)
.|++.++.-+....=+.-+.+........-...+..+..++..+...-..+...|..| .+|.+|=
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~-~~Y~~fL 114 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY-KKYEEFL 114 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3555555544433222222222222222222234456666777766667777777776 3444443
No 97
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.24 E-value=54 Score=27.06 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 017209 168 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQ 208 (375)
Q Consensus 168 ekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQ 208 (375)
--+|.+|.++...++....++.++..||.-|..=+..|+..
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34889999999999999999999999999999887777654
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.94 E-value=2.2e+02 Score=30.82 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE 340 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e 340 (375)
..+..+|..-...|......++.....|..+..+++.+.+++..++++-..+..........-.+.-..-..+...+.
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888899999999999999999999999999999888877776665555554443333333333
No 99
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.08 E-value=2.6e+02 Score=31.50 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.9
Q ss_pred hhhhhhccc
Q 017209 51 VQEECQNIE 59 (375)
Q Consensus 51 ~~~~~~~~~ 59 (375)
-.|.|-+..
T Consensus 461 s~~e~v~l~ 469 (717)
T PF10168_consen 461 SSGECVVLP 469 (717)
T ss_pred cCCcEEEEE
Confidence 445665554
No 100
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.79 E-value=2.8e+02 Score=31.71 Aligned_cols=98 Identities=24% Similarity=0.308 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHhHHH---------
Q 017209 264 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM-------AKSIKELKKENAFLKSKCEKSDFTLIE--------- 327 (375)
Q Consensus 264 eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKM-------sKKiKkLEKEn~~~K~K~E~sn~aLie--------- 327 (375)
.++.++.-|..++..+|.-|.--.--+..++.+..++ .-.|++|+-+....+-+|++....+..
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~ 548 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRD 548 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcc
Confidence 4445555555555555555444443344444333333 334555555555555555444444422
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 328 ----LVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 328 ----maeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
+-.+...........+..+++|-.+.+.+-.++.
T Consensus 549 r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~ 586 (775)
T PF10174_consen 549 RIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN 586 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333334445556666666666666655554
No 101
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.33 E-value=26 Score=25.79 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 305 KELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 305 KkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
|.||++-..|++-|+.....-..+..|+..+..++..++.+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999887666666666666666555555443
No 102
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.91 E-value=2e+02 Score=29.16 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHH
Q 017209 172 DAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHE---EKLVQEQSQM 248 (375)
Q Consensus 172 ~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~---e~~~~Ek~q~ 248 (375)
++|.--..+.++....-..+..||..|.+ ..+-++.+-+.+.+-+..|+..+.+.+..|.... +.+.+|-.++
T Consensus 46 AaLqKQKqK~e~ek~e~s~LkREnq~l~e----~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 46 AALQKQKQKVEEEKNEYSALKRENQSLME----SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHH----HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333455555443 3344555555666667777755554444444333 3334443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 249 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKS----NEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 249 k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KS----NevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
+ ..+.-....-...-.-|+.|..=..-|..-++-| -..|+.++..+-+-..--|+||-|...|..|.
T Consensus 122 K---sELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 122 K---SELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred H---HHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 3 2222111111111123445555555555444333 13444444444444455678888888887653
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.42 E-value=1.3e+02 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEK 320 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~ 320 (375)
.|..|+..+..++..|...|..|-...|.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777666554
No 104
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.87 E-value=1e+02 Score=29.89 Aligned_cols=51 Identities=27% Similarity=0.392 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Q 017209 290 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE 340 (375)
Q Consensus 290 F~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e 340 (375)
-.+.+.|.++-.++.++.+++...++...|+.+.....+.+|...+..+++
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666666666666555555443
No 105
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.01 E-value=1.9e+02 Score=27.80 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhh-------hhhhhhhHHHHHHHHHH
Q 017209 149 MDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQ-------KDDCLSQLKENEMLRTN 201 (375)
Q Consensus 149 KEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~-------~~~~~k~~eEN~~LreK 201 (375)
|||..++.+..+..+..+.-.--..+.||..++..+ .+.|.++..+|.+|++=
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333222222234445555444433 34455666788888753
No 106
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.95 E-value=1.8e+02 Score=27.70 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEER 332 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr 332 (375)
+++..+-..-..|...|..-+.....++....+.+.-+..|...|..+..+++..|.-....-+++......|..+-.+-
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566777777777888888888888888888888888888888888877766666666666666666555544
Q ss_pred HHHHHHHHHHHHHH
Q 017209 333 ERMKKQLEKSKNQK 346 (375)
Q Consensus 333 ~~~~ke~e~~kkq~ 346 (375)
..++..+..+..-+
T Consensus 214 ~~~k~~~~~~~~el 227 (237)
T PF00261_consen 214 EKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.71 E-value=1.9e+02 Score=27.75 Aligned_cols=140 Identities=20% Similarity=0.137 Sum_probs=70.7
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHh--hhhhhhhh-HHHHHHHHHHHHHHHHHHhhHHHH
Q 017209 139 RELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEE--QKDDCLSQ-LKENEMLRTNLKQLADQYALTEQQ 215 (375)
Q Consensus 139 RELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE--~~~~~~k~-~eEN~~LreKLK~LieQYElRE~h 215 (375)
-.|+-.|+.|.+|+.+..+.=+ .=.+.+.++..-|.++-.+|.- +.-...+. -+|.+.|+.=++.+-++|-.
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve-~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~---- 85 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVE-TAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRS---- 85 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3566777777777665433211 1123344555555555444431 11111222 24566677767766666653
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 216 YAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDAL 283 (375)
Q Consensus 216 ~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL 283 (375)
+....++-+=|.|-..|+++-.++....-......++.+..+|...=..|+.||-.|..=+-+-...+
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l 153 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAIL 153 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666554443332222222233444555555556678888877755554443333
No 108
>PRK02119 hypothetical protein; Provisional
Probab=56.57 E-value=1e+02 Score=24.71 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 296 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 360 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER 360 (375)
||..|..+|-.||--....-.-.+..|..+.. ..++++.|...++.|...-
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~--------------Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIE--------------QQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 67788888988888877777767777776664 4445566666666665443
No 109
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.42 E-value=3e+02 Score=30.06 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=62.6
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQL--TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL 339 (375)
Q Consensus 263 ~eLr~QL--~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~ 339 (375)
..-|.++ +.|..++.++..-+..+..-=..|..|.+.+.+++...|++...+..-....+.++-.+-+|-+....-+
T Consensus 407 ~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 407 EESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445564 8899999999999999998889999999999999999999999888888888888776666655444443
No 110
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=56.24 E-value=29 Score=30.19 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 333 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~ 333 (375)
.|+-++.|++..||.||..++-|.| .|++|..|.+
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKie----vLLDMLtett 106 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIE----VLLDMLAETT 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 6899999999999999999999976 5788877754
No 111
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.32 E-value=3.1e+02 Score=29.50 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=39.8
Q ss_pred hhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHH-----------HHHHhHHHHHHHHHHHhhHHH
Q 017209 96 RRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAM-----------AVRDKLESLCRELQRQNKMLM 149 (375)
Q Consensus 96 ~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai-----------~~K~KLE~LCRELQkqNK~lK 149 (375)
|=.+..-+.....+|..+.+.|..+..+++.|+ ....+.+.|-.||.+-+-.+-
T Consensus 125 ~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 125 YASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566899999999999999998754 446788888888877665554
No 112
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.69 E-value=99 Score=27.79 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH-HHHHH
Q 017209 254 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE-LVEER 332 (375)
Q Consensus 254 qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie-maeEr 332 (375)
.+..+...=.+|+.++.........+...|+.-+..=+ .+.|...|..|+.++..+..|.+....+-.. ..+++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~ 147 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEK 147 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 45555555566666666666666655544443332211 1455556666666666666555433221111 24555
Q ss_pred HHHHHHHHHHHHHH
Q 017209 333 ERMKKQLEKSKNQK 346 (375)
Q Consensus 333 ~~~~ke~e~~kkq~ 346 (375)
....+.+..+.+..
T Consensus 148 ~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 148 EKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544433
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=53.28 E-value=2.4e+02 Score=27.99 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 249 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVK---SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 249 k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~K---SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
..+..++..+...-..++.++..+...|.-.+..+.+ |..-|...+.+.......+..++.+...++...+.....+
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566667777777777766666555 5555666666777777777777777666666666655555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 326 IELVEE-RERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 326 iemaeE-r~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
...... +.....++..+..++..++.-...++.
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 234 QQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443222 223333444455555555544444444
No 114
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.81 E-value=2.3e+02 Score=27.58 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 270 TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 270 ~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 349 (375)
..|+..-..+...+.+++. +..|++++.-...+|+.|......+.+..+.-...|...-..+..+++.+...-.+|
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455566667777777665 788899999999999998888888877766655555444444444444444443333
No 115
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.47 E-value=2e+02 Score=26.76 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH-----HHHHHHHHHHH
Q 017209 268 QLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEE-----RERMKKQLEKS 342 (375)
Q Consensus 268 QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeE-----r~~~~ke~e~~ 342 (375)
....|.+....++..+.........++..+.+|..++..+.-....|..+.... .+-..+..- -.....-|+.+
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a-~a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA-KAQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCccchHHHHHHH
Confidence 344566666777777777777888888888899999999888888888886432 222222211 12223345555
Q ss_pred HHHHHHHHHHHHHHH
Q 017209 343 KNQKEKLESLCRSLQ 357 (375)
Q Consensus 343 kkq~ekLE~LCRaLQ 357 (375)
..++..++.-..+..
T Consensus 171 e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 171 EEKIEEMEARAEASA 185 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665554443
No 116
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=52.11 E-value=3.7e+02 Score=29.84 Aligned_cols=42 Identities=36% Similarity=0.371 Sum_probs=25.0
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 319 EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 360 (375)
Q Consensus 319 E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER 360 (375)
+-.|.++-..-+|+..+..+++..+.....|-.+...++.+.
T Consensus 349 ~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~ 390 (617)
T PF15070_consen 349 EFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEP 390 (617)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 334455555566777777776666555555655555555554
No 117
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.83 E-value=2.2e+02 Score=27.14 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=22.4
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 319 EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 319 E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
+.++..+.++-+++..+.+++..++.+++.|+..-..++.
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666555555554
No 118
>PF14645 Chibby: Chibby family
Probab=49.97 E-value=53 Score=28.68 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERER 334 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~ 334 (375)
.-.++..+.++++.|+.||..++-|++ -|++|..|.+.
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~e----lLlDMLtetta 106 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIE----LLLDMLTETTA 106 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 446788999999999999999999976 56777776553
No 119
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.50 E-value=3.4e+02 Score=28.38 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=59.2
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH--------------------
Q 017209 281 DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE-------------------- 340 (375)
Q Consensus 281 dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e-------------------- 340 (375)
.-|..+.+||..-|.++..|.--+.+++.||..+.-..+......-+|.+|.+.+..++.
T Consensus 113 nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq 192 (401)
T PF06785_consen 113 NQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQ 192 (401)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 445668889999999999999999999999999988877776666666666555544432
Q ss_pred -----HHHHHHHHHHHHHHHHHHH-hh
Q 017209 341 -----KSKNQKEKLESLCRSLQAE-RK 361 (375)
Q Consensus 341 -----~~kkq~ekLE~LCRaLQ~E-R~ 361 (375)
+-+..|.+|++=.+-|-.| |+
T Consensus 193 ~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 193 HSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244667777777766555 44
No 120
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.47 E-value=2e+02 Score=25.76 Aligned_cols=6 Identities=0% Similarity=0.014 Sum_probs=2.7
Q ss_pred HHHHHH
Q 017209 177 VSIKLE 182 (375)
Q Consensus 177 Iq~~me 182 (375)
|-.+|.
T Consensus 6 Il~y~~ 11 (169)
T PF07106_consen 6 ILEYMK 11 (169)
T ss_pred HHHHHH
Confidence 444444
No 121
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.31 E-value=4.3e+02 Score=29.14 Aligned_cols=73 Identities=25% Similarity=0.235 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh---HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 017209 132 DKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD---LSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQ 208 (375)
Q Consensus 132 ~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke---lsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQ 208 (375)
.-||.|| ...|-+++||.+...+-.--|.+ ..++=+.+.+++-..+. +.|.+...--++|..|-+.++.|
T Consensus 159 ~~~EaL~----ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelr---dtN~q~~s~~eel~~kt~el~~q 231 (596)
T KOG4360|consen 159 ELLEALQ----EKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELR---DTNTQARSGQEELQSKTKELSRQ 231 (596)
T ss_pred HHHHHHH----hhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466665 44566777776665555555544 44566666666665554 44444455667788999999999
Q ss_pred Hhh
Q 017209 209 YAL 211 (375)
Q Consensus 209 YEl 211 (375)
||-
T Consensus 232 ~Ee 234 (596)
T KOG4360|consen 232 QEE 234 (596)
T ss_pred HHH
Confidence 984
No 122
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.57 E-value=76 Score=27.62 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 017209 168 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLA 206 (375)
Q Consensus 168 ekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~Li 206 (375)
-.+|.+|.|++...+....++.++..||.-|..=+..|+
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 357999999999999999999999999988776555554
No 123
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.55 E-value=2e+02 Score=24.98 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 317 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K 317 (375)
.+++.+..+-..|+.-+-.+-.|+..+.+.|...-...-.+-+|++-++-+...|+|....+.--
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777778888888888888888888888888888888888877766665443
No 124
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.28 E-value=5.5e+02 Score=30.07 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=101.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhHH--HHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 017209 127 AMAVRDKLESLCRELQRQNKML--MDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQ 204 (375)
Q Consensus 127 ai~~K~KLE~LCRELQkqNK~l--KEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~ 204 (375)
.+..-.+..+|.+||-.-++.| |+...++...++..-..+.++|+..+......+-+-. .|-..|+..|..
T Consensus 462 ~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le-------~E~~~l~~el~~ 534 (913)
T KOG0244|consen 462 TIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLE-------SERSRLRNELNV 534 (913)
T ss_pred CccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccc-------cccHHHHHHHHh
Confidence 4555666777777777777766 4444444444444434456666666655444443322 344456666666
Q ss_pred HHH-HHhhHHHHHHHHHhHHHHHHHHHHHhHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 205 LAD-QYALTEQQYAQKLKQKTLELQIGELKIKQHE-EKLVQEQSQ----MKLYAEQVSQLLATEKNLRLQLTADGEKFQQ 278 (375)
Q Consensus 205 Lie-QYElRE~h~~k~lK~KeLE~QL~~AKleq~~-e~~~~Ek~q----~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeE 278 (375)
|-. .|-+++.+.. +-++||.|+...+-..-. .....-+.. ..-+...+..+...-..|--......++|..
T Consensus 535 ~~~~~~kl~eer~q---klk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~ 611 (913)
T KOG0244|consen 535 FNRLAAKLGEERVQ---KLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQ 611 (913)
T ss_pred hhHHHHHhhhHHHH---HHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 655 6666666544 556788887755432221 111111111 1223344555555566666777777888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 017209 279 FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEER 332 (375)
Q Consensus 279 FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr 332 (375)
+.+.-. +|+.-|.++-++-+-+...+...+...+..|.--.+|.
T Consensus 612 ~K~~~~----------Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~ea 655 (913)
T KOG0244|consen 612 WKDRTE----------KEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEA 655 (913)
T ss_pred HHHHHH----------HHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 876443 35555666665555555555555555555554444443
No 125
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=46.19 E-value=1.3e+02 Score=26.14 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017209 266 RLQLTADGEKFQQFQDAL 283 (375)
Q Consensus 266 r~QL~~Y~eKFeEFQdTL 283 (375)
..+|+.|.+||.+||.-+
T Consensus 18 Ys~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 18 YMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888888888888655
No 126
>PF15294 Leu_zip: Leucine zipper
Probab=46.06 E-value=3.3e+02 Score=27.46 Aligned_cols=45 Identities=33% Similarity=0.389 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHHHHHhHHHHH
Q 017209 187 DCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQ-KTLELQIGELKIKQHE 238 (375)
Q Consensus 187 ~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~-KeLE~QL~~AKleq~~ 238 (375)
+-..+..||..|+++|+.+-.++- ..++. ..|+.+|.+.++.+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at-------~~l~Ek~kl~~~L~~lq~~~~~ 178 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQAT-------SALDEKSKLEAQLKELQDEQGD 178 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 334556899999999999988887 33443 4688888888885443
No 127
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.78 E-value=4.2e+02 Score=28.60 Aligned_cols=62 Identities=27% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 294 KQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 294 KkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
+.|++++.+-+..-+|+-. ++..+.+-+-..=|..+...-.++...+++=++|||.|-.-+.
T Consensus 259 ~~EveRlrt~l~~Aqk~~~------ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQ------EKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESES 320 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4455554444444443322 2333333332222333333344566778899999999876554
No 128
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.40 E-value=2.1e+02 Score=24.93 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 273 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 273 ~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
..-|..|+-.+.++.-+..+-+.|++.-..-...++.+....+...+.....|...-..|. ..++++.+-+.
T Consensus 52 l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~-~k~eyd~La~~ 123 (139)
T PF05615_consen 52 LKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ-NKEEYDALAKK 123 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445678888888888888888888888888888888888888887777777765433332 33344444443
No 129
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=45.24 E-value=2.9e+02 Score=26.66 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 287 NEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK-----SDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 287 NevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~-----sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
+.++..|..|...+.--+++.+.+...|++|.-+ ....+.+.+++-+....+++.+..+ +|.++|-.||.
T Consensus 111 ~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~-----~lr~al~EERr 185 (223)
T cd07605 111 NKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQ-----GLRDALLEERR 185 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3456677777777777777777777777777553 4556677777777676776666554 77788888875
No 130
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.63 E-value=6.9e+02 Score=30.80 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 017209 252 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM 300 (375)
Q Consensus 252 ~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKM 300 (375)
......+.++-...+.+++-|...+..++..+..-++....++.+|..+
T Consensus 998 E~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 998 EQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555666677777788888888888888888888888888888776
No 131
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.54 E-value=3.2e+02 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 248 MKLYAEQVSQLLATEKNLRLQLTADGEK 275 (375)
Q Consensus 248 ~k~l~eqv~~l~~tE~eLr~QL~~Y~eK 275 (375)
+..+..+++.+......++.+++.--.+
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655556666555544333
No 132
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.22 E-value=1.4e+02 Score=27.11 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 275 KFQQFQDALVKSNEVFETFKQ---EIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 275 KFeEFQdTL~KSNevF~tFKk---EMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
.++.+..-|...|....+|+. ..+.+.++|..|+.++..++..|+
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555 666666667666666665544443
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=43.12 E-value=2.5e+02 Score=25.16 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 252 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 252 ~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
..+|..|.+.-..|..+|.-+.+++.+..+.+..+...+.. .+.+.++|.-||.+....-.+..-+..-|
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666666666655543 33666666666666665555544443333
No 134
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=42.97 E-value=2.9e+02 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017209 259 LATEKNLRLQLTADGEKFQQFQDALVKS 286 (375)
Q Consensus 259 ~~tE~eLr~QL~~Y~eKFeEFQdTL~KS 286 (375)
..+-.+.+.+++.|++.|..-|..|.++
T Consensus 135 k~~r~e~qk~~~~yv~~~k~~q~~~~~~ 162 (165)
T PF09602_consen 135 KLTREEWQKVLDAYVEQAKSSQKELAKK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677889999999999999877764
No 135
>PHA02562 46 endonuclease subunit; Provisional
Probab=42.80 E-value=4.2e+02 Score=27.77 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=5.0
Q ss_pred cccCCCCccc
Q 017209 25 AVINPNSAAV 34 (375)
Q Consensus 25 ~~~~~~~~~~ 34 (375)
.++-||.+.-
T Consensus 31 ~i~G~NG~GK 40 (562)
T PHA02562 31 LITGKNGAGK 40 (562)
T ss_pred EEECCCCCCH
Confidence 4455555544
No 136
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.63 E-value=4.7e+02 Score=28.32 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH---------HHHHHHHHHHHHHHH
Q 017209 250 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNE---------VFETFKQEIEKMAKS 303 (375)
Q Consensus 250 ~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNe---------vF~tFKkEMEKMsKK 303 (375)
.+...+..+.+.|...|.+|..|..++....-.|.++|= .|.....+|+.+...
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999999999999983 555555555544443
No 137
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.60 E-value=2.4e+02 Score=26.38 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHhHH-HHHH
Q 017209 255 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK---SDFTLI-ELVE 330 (375)
Q Consensus 255 v~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~---sn~aLi-emae 330 (375)
...+...-..|+..+.....+..+.+..|...-.--.-. .|-..+-..+..|+++...++..++. +|...| .|-.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334455566777777777777777666665542211111 45666677777888888888777653 333433 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 331 ERERMKKQLEKSKNQKEKLESLCRS 355 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~ekLE~LCRa 355 (375)
+-......+..+.--|.-|..-|+.
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555566666677777776654
No 138
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.39 E-value=6e+02 Score=29.14 Aligned_cols=70 Identities=34% Similarity=0.358 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCC
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE--------RMKKQLEKSKNQKEKLESLCRSLQAE-RKQNSV 365 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~--------~~~ke~e~~kkq~ekLE~LCRaLQ~E-R~~~~~ 365 (375)
.|+..+.-++..+||||..||--.--....|-=-.+||. ..+++++. -+||.+|++=|+.|..= |+-+|+
T Consensus 134 ~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~-vkkiakLEaEC~rLr~l~rk~lpg 212 (769)
T PF05911_consen 134 AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLES-VKKIAKLEAECQRLRALVRKKLPG 212 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCC
Confidence 466677778888889998887765555544422223332 23445553 56899999999999987 776655
No 139
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=41.25 E-value=7.4e+02 Score=30.18 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 017209 251 YAEQVSQLLATEKNLRLQLTADGEKFQ-QFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 329 (375)
Q Consensus 251 l~eqv~~l~~tE~eLr~QL~~Y~eKFe-EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema 329 (375)
+..++..+..+-..+..|++....+.. -|.+|+--.++.|..|-+.+..|.-+...+|++...+...-......--+..
T Consensus 266 ~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~ 345 (1294)
T KOG0962|consen 266 LLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELD 345 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777776666 7999999999999999999999999999999888877633222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 330 EERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 330 eEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
=+-..+..+.+....=...+..+|+.+.-+
T Consensus 346 ~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~ 375 (1294)
T KOG0962|consen 346 LEQSELQAEAEFHQELKRQRDSLIQELAHQ 375 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333444444566777766655
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.88 E-value=5.5e+02 Score=28.53 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=94.4
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHhhHhHH-HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-HHhhHHHHHH
Q 017209 140 ELQRQNKMLMDECKRVSSEGQNLRLDLS-AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLAD-QYALTEQQYA 217 (375)
Q Consensus 140 ELQkqNK~lKEE~~~~~~eee~kRkels-ekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~Lie-QYElRE~h~~ 217 (375)
.|=++|-.+.+-+-. ..++..+.-|. --|.-++.+-...|....+ .-.-+.+|..+|..+.. .|..-+.-
T Consensus 169 dlI~~~t~~v~~~~l--~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~----~~~~~~Elk~~l~~~~~~i~~~ie~l-- 240 (581)
T KOG0995|consen 169 DLIRINTALVEDSPL--EQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN----SSELEDELKHRLEKYFTSIANEIEDL-- 240 (581)
T ss_pred HHHHHhHHHhhccch--hccchHHHHHHHHHHHHHHHHHHHHhccCcc----cchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 667788887776522 22333455566 4566777777777764333 12456678888887765 55532221
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 017209 218 QKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEI 297 (375)
Q Consensus 218 k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEM 297 (375)
.-...+|+.+|..++-.- .+...+.+....|..-..-.+.-++.|..|-.. =-..-...+.|+
T Consensus 241 -~~~n~~l~e~i~e~ek~~---------~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~-------~~~~l~~l~~Ei 303 (581)
T KOG0995|consen 241 -KKTNRELEEMINEREKDP---------GKEESLREKKARLQDDVNKFQAYVSQMKSKKQH-------MEKKLEMLKSEI 303 (581)
T ss_pred -HHHHHHHHHHHHHHhcCc---------chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHH
Confidence 012234555554221111 111122222222222222222222222222222 122334556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 298 EKMAKSIKELKKENAFLKSKCEKSDFTL---IELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K~E~sn~aL---iemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
+..--.+.+|-+++..|+...+.-+... =.|-.||..+.+.+.....+++.|.
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766544333 3567777777777766555555443
No 141
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.65 E-value=3.1e+02 Score=25.60 Aligned_cols=61 Identities=28% Similarity=0.442 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 291 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE-LVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie-maeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
..|..++..+...+..|+++...|+.+++.......+ +..+...+..++..+++....|.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777788888888888777766654 355556667777777777776654
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.44 E-value=7.1e+02 Score=29.74 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKK 337 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~k 337 (375)
...+-..+..++..|..........+.+.-.--...-.++....++++.+.++...+-..|+++-...-.+--+|..+..
T Consensus 834 ~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~ 913 (1174)
T KOG0933|consen 834 LKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEH 913 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHh
Confidence 34444556666677777777777666666666667777888888888888888888888888888888777777777777
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHhh
Q 017209 338 QLEK-------SKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 338 e~e~-------~kkq~ekLE~LCRaLQ~ER~ 361 (375)
++.. ..+.+++|.+=.--|-.|+.
T Consensus 914 e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~ 944 (1174)
T KOG0933|consen 914 EVTKLESEKANARKEVEKLLKKHEWIGDEKR 944 (1174)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccchhHHHH
Confidence 7654 35556666655555555544
No 143
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=39.96 E-value=2.3e+02 Score=29.91 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 316 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~ 316 (375)
......+..|..=..++-..+++...|=-+|-.-|++|..+|..|+.+...++.
T Consensus 245 ~s~~ek~~~yn~Anr~VAi~cnntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~ 298 (391)
T smart00435 245 GNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKK 298 (391)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999999999999999999888776665543
No 144
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.58 E-value=2.6e+02 Score=29.18 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 298 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRS 355 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRa 355 (375)
.++-+.+-.+-.+...++++.|..+.-.-+|.++++.++.+...+++.++=|.+=.|.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556667778888899999999999999999999999999999999999988887777
No 145
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=39.42 E-value=6.3e+02 Score=28.79 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 017209 262 EKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSI 304 (375)
Q Consensus 262 E~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKi 304 (375)
-..|...|..-..--.+++..|+-+-+-..+|-.||..+...+
T Consensus 421 i~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 421 ISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566668888999999999999999988886543
No 146
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=6.9e+02 Score=29.20 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=12.3
Q ss_pred cccccccccCCC---cchHHhhhh
Q 017209 79 SESDDTLKNRKP---ENTETRRKS 99 (375)
Q Consensus 79 ~~~~~~~~~~~~---~~~e~~r~~ 99 (375)
.+.+|+...+|. -+||-||+.
T Consensus 297 ~~~~~aep~kklP~~~TFEDKrke 320 (1118)
T KOG1029|consen 297 VGVVDAEPPKKLPAPVTFEDKRKE 320 (1118)
T ss_pred ccccccCccccCCCCcchhhhhHH
Confidence 344444444443 588888875
No 147
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.97 E-value=3.6e+02 Score=25.89 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HhhhHhH
Q 017209 254 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQ-------EIEKMAKSIKELKKENAFLKSKC-EKSDFTL 325 (375)
Q Consensus 254 qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKk-------EMEKMsKKiKkLEKEn~~~K~K~-E~sn~aL 325 (375)
.+..+...-..+...|+.--.-|.++.....|.-++..+||. .++.+..++++.+.--..|+... ++.+.+-
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556666666666666777777777777777755 55566666666666666666553 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017209 326 IELVEERERMKKQLEKSKNQKE 347 (375)
Q Consensus 326 iemaeEr~~~~ke~e~~kkq~e 347 (375)
.+++.-+.....++-.++..+.
T Consensus 150 eei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444443
No 148
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.01 E-value=4.5e+02 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017209 291 ETFKQEIEKMAKSIKELKK 309 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEK 309 (375)
..|..+|-++..++-.+-+
T Consensus 189 qe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 189 QEYHEEMIKLFEEADELRK 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 149
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.37 E-value=4e+02 Score=25.93 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
.+|+++.-.|..-......--...+.+....-.+..||....+++-....-|..|+++++....+|+
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.27 E-value=2.1e+02 Score=26.67 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017209 293 FKQEIEKMAKSIKELKKENAFL 314 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~ 314 (375)
-|.|||.|.+.+.+||--...+
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999765554
No 151
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.18 E-value=71 Score=30.33 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=59.8
Q ss_pred HhhcHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHhhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 283 LVKSNEVFETFKQEIEKMA---KSIKELKK-----ENAFLKSKCEKSDFTLIEL--VEERERMKKQLEKSKNQKEKLESL 352 (375)
Q Consensus 283 L~KSNevF~tFKkEMEKMs---KKiKkLEK-----En~~~K~K~E~sn~aLiem--aeEr~~~~ke~e~~kkq~ekLE~L 352 (375)
=..|-++|..|+.|.-.-+ |.+-.|+. +..-=+.|.=-.|+...+| -++-+.++.++..+..|+..|..-
T Consensus 22 P~ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t 101 (201)
T KOG4603|consen 22 PYSSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQT 101 (201)
T ss_pred CCchHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3457789999999983222 22223322 1222234444567777777 477888999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC
Q 017209 353 CRSLQAERKQNSVGSNN 369 (375)
Q Consensus 353 CRaLQ~ER~~~~~~~~~ 369 (375)
|+-+.+|-+.+.+..+.
T Consensus 102 ~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 102 CSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHHHHHHHHhcCh
Confidence 99999998888776543
No 152
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.68 E-value=3.1e+02 Score=29.65 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=8.6
Q ss_pred HHHHhhHHHHHHHHhh
Q 017209 141 LQRQNKMLMDECKRVS 156 (375)
Q Consensus 141 LQkqNK~lKEE~~~~~ 156 (375)
|..+|+.+++|+.++.
T Consensus 78 l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 78 LISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666655443
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.66 E-value=4.2e+02 Score=25.71 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKE 347 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~e 347 (375)
.+|.++.......+++...|-.+......-+..|.+++.....+...|+.++.
T Consensus 61 e~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 61 EEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444466666666667777777777777777777777666666543
No 154
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.45 E-value=3.2e+02 Score=24.84 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 017209 287 NEVFETFKQEIEKMAKSIKELKK---ENAFLKSKCEK 320 (375)
Q Consensus 287 NevF~tFKkEMEKMsKKiKkLEK---En~~~K~K~E~ 320 (375)
++-+.+++..+..-.+.|+.|.+ .+..|+.+.+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~ 62 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEE 62 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 44455555555555555555554 44444444333
No 155
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.14 E-value=1.6e+02 Score=23.95 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 288 EVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL---VEERERMKKQLEKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 288 evF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem---aeEr~~~~ke~e~~kkq~ekLE~LCRaLQ 357 (375)
.+|.+...=-..+....+.++.....++.|..++-..|-.+ -.--..+..+++.++.++.+...+..-+.
T Consensus 7 ~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 7 LIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543222277778999999999999999999888764 23344566777777777777777766554
No 156
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.88 E-value=2.7e+02 Score=24.00 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 307 LKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 307 LEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
||.....+-...+.....+.++++|++.+.-+...++..+..+..
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444445566666666666555555555555444
No 157
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=34.84 E-value=1.6e+02 Score=29.62 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=55.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 278 QFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 278 EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
+=-++..+.|.|-.. |-..--.+-.||--|..|-+|++....+.++.++..+....++-.+..++.+|+
T Consensus 204 eNar~V~kAnsVldR----mk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kme 272 (311)
T PF04642_consen 204 ENARAVEKANSVLDR----MKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKME 272 (311)
T ss_pred hhHHHHHHHHHHHHH----HHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344556667776544 334456778899999999999999999999999999999999999888888775
No 158
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.35 E-value=2.7e+02 Score=23.00 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 017209 273 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV---EERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 273 ~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema---eEr~~~~ke~e~~kkq~ekL 349 (375)
.+.++.|...|.+=+ .+...=.++-.+-...+.+-.+...++.+.-...+.+-... +++..+..+...++.++..|
T Consensus 8 r~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 8 RENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 334445555554443 22222334444444445555555555555444444443332 24556666666777777777
Q ss_pred HHHHHHHHHHhhc
Q 017209 350 ESLCRSLQAERKQ 362 (375)
Q Consensus 350 E~LCRaLQ~ER~~ 362 (375)
+.-...+..+...
T Consensus 87 e~~~~~~e~~l~~ 99 (108)
T PF02403_consen 87 EEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 159
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.25 E-value=2.1e+02 Score=24.67 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 017209 274 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDF 323 (375)
Q Consensus 274 eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~ 323 (375)
+.|.+|...|..-..-+...|..|..+......|.-||..|+.+......
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888888888888888888888888888888665544
No 160
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.81 E-value=8.1e+02 Score=28.42 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH--HHHHHHHHHhHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHH
Q 017209 191 QLKENEMLRTNLKQLADQYALTEQQYAQKLKQK--TLELQIGELKIKQHEEKLV---QEQSQ-MKLYAEQVSQLLATEKN 264 (375)
Q Consensus 191 ~~eEN~~LreKLK~LieQYElRE~h~~k~lK~K--eLE~QL~~AKleq~~e~~~---~Ek~q-~k~l~eqv~~l~~tE~e 264 (375)
++.||.-||.+|..|-.|+-.+|.-- +.-..- .||+ +-|+-.+..+. +|..+ ...|+....+|.+.-..
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~-k~~~~~~~n~El----~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~ 466 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAE-KTSGSQDCNLEL----FSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIEN 466 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhc-ccCCCcccchhh----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Confidence 35799999999999988865544321 000000 1332 22222221111 11111 12233344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Q 017209 265 LRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKN 344 (375)
Q Consensus 265 Lr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kk 344 (375)
++..=.-|.+=|.+=.+.|.++...|+ -||.++. -|.......+..+..-|-..-.|+..+.=-+..-..
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~~d---~e~~rik-------~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDa 536 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQFD---IETTRIK-------IEVEEALVNVKSLQFKLEASEKENQILGITLRQRDA 536 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHH-------HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHH
Confidence 555555566666766777777777765 2333322 222333333333333333333344444444444455
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 017209 345 QKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 345 q~ekLE~LCRaLQ~ER~~~ 363 (375)
.+.+|.-|.|+||.==..+
T Consensus 537 Ei~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7889999999999764333
No 161
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.74 E-value=9e+02 Score=28.96 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhh
Q 017209 104 FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVS 156 (375)
Q Consensus 104 ~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~ 156 (375)
..|+++--.|..+..++....+...-.+.+||.|..-|+.++.++.+|..-..
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~ 456 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT 456 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666666666677777888888888888888877766443
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.46 E-value=7.5e+02 Score=27.98 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 017209 197 MLRTNLKQLADQYALTEQQYA 217 (375)
Q Consensus 197 ~LreKLK~LieQYElRE~h~~ 217 (375)
.|++|++.+.+.++.-..-++
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554333333
No 163
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.26 E-value=2.8e+02 Score=23.03 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 017209 276 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 341 (375)
Q Consensus 276 FeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~ 341 (375)
|++++.-+..+=++.+-++-|++..--+.-.|..++...+.-.+......-.+-.|+..|..-+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666777777777766666666666665554444444444444444444444333
No 164
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.07 E-value=5.1e+02 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 255 VSQLLATEKNLRLQLTADGEKFQQ 278 (375)
Q Consensus 255 v~~l~~tE~eLr~QL~~Y~eKFeE 278 (375)
+.++-+-|.+|+.+-..|..||--
T Consensus 224 mdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 224 MDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566799999999999999985
No 165
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.07 E-value=9.9e+02 Score=29.22 Aligned_cols=103 Identities=24% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHh-hHHHHHHHHHhHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 017209 205 LADQYA-LTEQQYAQKLKQKTLELQIGELKIKQHEEK-----------LVQEQSQMKLYAE-QVSQLLATEKNLRLQLTA 271 (375)
Q Consensus 205 LieQYE-lRE~h~~k~lK~KeLE~QL~~AKleq~~e~-----------~~~Ek~q~k~l~e-qv~~l~~tE~eLr~QL~~ 271 (375)
+++||- +-|.|++=+-+|+-...=+.+.|-..++.- +++|-.-++.-.+ ....|.++-+.|+.||--
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 567775 444444445667766555555554333211 1222221111111 223355556778877765
Q ss_pred HHH----------HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 017209 272 DGE----------KFQQFQDALVKSNEVFETFKQEIEKMAKSIKEL 307 (375)
Q Consensus 272 Y~e----------KFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkL 307 (375)
-.+ +|.+-+.+++=+-+-|.-..+|.++..|.|-+|
T Consensus 1192 taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1192 TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 566777777777777888888888877766554
No 166
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.95 E-value=6.5e+02 Score=27.07 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=41.1
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHhHH----HHHH---HhHHHHHHHHHHHhhHHHHHHHH
Q 017209 101 KRTFKSEKEFLEFTLKYQQVLAERDAA----MAVR---DKLESLCRELQRQNKMLMDECKR 154 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv~~Er~ka----i~~K---~KLE~LCRELQkqNK~lKEE~~~ 154 (375)
-++-.|+.++.+.-+++.-+.+++... -.++ .++|-+-++||++|..+.+|..+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888877777642 2223 45677889999999999999877
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.88 E-value=3.4e+02 Score=23.81 Aligned_cols=104 Identities=20% Similarity=0.348 Sum_probs=47.1
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 017209 116 KYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKEN 195 (375)
Q Consensus 116 ~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN 195 (375)
=...|+.-|++....+.-|..-.+-|.-.+-.+.....+....-+..-.++. -++......+..+..... -+
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-~~~~~~~~l~~~~~~~~~-------~~ 110 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA-SAEEKERQLQKQLKSLEA-------KL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HH
Confidence 3445555566655555555555555555555555544443333222222222 333333333333332111 11
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 017209 196 EMLRTNLKQLADQYALTEQQYAQKLKQKTLEL 227 (375)
Q Consensus 196 ~~LreKLK~LieQYElRE~h~~k~lK~KeLE~ 227 (375)
...++-+..+......+.-.|.+-+|.++.|+
T Consensus 111 k~~kee~~klk~~~~~~~tq~~~e~rkke~E~ 142 (151)
T PF11559_consen 111 KQEKEELQKLKNQLQQRKTQYEHELRKKEREI 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233333333333445557788888887
No 168
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.71 E-value=2.8e+02 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 250 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVK 285 (375)
Q Consensus 250 ~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~K 285 (375)
.|...|-+....=..++.||..-.+||..++.+.--
T Consensus 26 eLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~ 61 (72)
T COG2900 26 ELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIA 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 444455555555678899999999999999876543
No 169
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.82 E-value=2.4e+02 Score=24.60 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 274 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 274 eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
++|.+|...|.....-+...|..|..+......|.-||.-|+.+.+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555555555555555555544
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.58 E-value=5.5e+02 Score=25.83 Aligned_cols=45 Identities=36% Similarity=0.417 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 017209 291 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM 335 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~ 335 (375)
.....|+..+.+....|.++...+..-.+..+..|.++..+...+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555554455555554444443333
No 171
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.53 E-value=8.6e+02 Score=28.05 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=105.8
Q ss_pred HHHHhHHHHHHH---HHHHhhHHHHHHHHhhHH-HHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHH
Q 017209 129 AVRDKLESLCRE---LQRQNKMLMDECKRVSSE-GQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLS---QLKENEMLRTN 201 (375)
Q Consensus 129 ~~K~KLE~LCRE---LQkqNK~lKEE~~~~~~e-ee~kRkelsekFq~tL~dIq~~meE~~~~~~k---~~eEN~~LreK 201 (375)
.+--|..-+|+| |-++.|-||+|...+.-- +-....++...+..-=..++.+.-.+..--.+ ..++|+.|-+|
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K 492 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK 492 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 445566666766 445566666655433322 22222333333333322333333222221112 24688889999
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHH-HHHHHHHhHHHHHHHHH-HH------HHHHHHHHHH-----------HHHHHHH-
Q 017209 202 LKQLADQYALTEQQYAQKLKQKTL-ELQIGELKIKQHEEKLV-QE------QSQMKLYAEQ-----------VSQLLAT- 261 (375)
Q Consensus 202 LK~LieQYElRE~h~~k~lK~KeL-E~QL~~AKleq~~e~~~-~E------k~q~k~l~eq-----------v~~l~~t- 261 (375)
+..+|.-.+.-+.|+..+++-|+- |.++-++ +..++.... ++ ...+..+.++ .+.+.+.
T Consensus 493 ~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~-I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~n 571 (961)
T KOG4673|consen 493 KGELITKLQSEENKLKSILRDKEETEKLLQET-IEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKEN 571 (961)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHh
Confidence 999999999999999999998864 4433332 222221110 00 0111111111 1112111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 262 ---EKNLRLQLTADGEKFQQFQDALVKSNEVF----ETFKQEIEKMAKSIKELKKENAFLKSK 317 (375)
Q Consensus 262 ---E~eLr~QL~~Y~eKFeEFQdTL~KSNevF----~tFKkEMEKMsKKiKkLEKEn~~~K~K 317 (375)
-.++|.+-.+|+.-..++-.+|.+.-.-- .-||.|++.+-.+..--|--+..+..-
T Consensus 572 rlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 572 RLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23678888999999999999998876533 568999999988887777766666443
No 172
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=31.49 E-value=1.6e+02 Score=33.63 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 322 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~sn 322 (375)
+..|.+++.|++.+|+++...+..|..+.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~ 838 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEG 838 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 779999999999999999999999975543
No 173
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.43 E-value=3.2e+02 Score=22.69 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 298 EKMAKSIKELKKENAFLKSK---CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K---~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
.....++..||+-...-..+ .......+-.|-..|..+..+++.......+|+..|+.+-.
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444455555443322221 13334455667888888999999999999999999987754
No 174
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=30.41 E-value=3.5e+02 Score=23.18 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=60.9
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHH
Q 017209 97 RKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKD 176 (375)
Q Consensus 97 r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~d 176 (375)
......+..+...+..|..-...+....+..-.++.+|+.+..+..+..+.++...+.+...... ....+.++
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~----~~~~~~s~--- 81 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ----NEALNGSS--- 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCcH---
Confidence 34444555666666666666666666655444678888888888877777777776554322110 00000000
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017209 177 VSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKL 220 (375)
Q Consensus 177 Iq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~l 220 (375)
..+... ---..|..+|+..+..|..-+..|....
T Consensus 82 ---------~~r~~~-~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 115 (151)
T cd00179 82 ---------VDRIRK-TQHSGLSKKFVEVMTEFNKAQRKYRERY 115 (151)
T ss_pred ---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001110 1122588899999999998777776544
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.33 E-value=1e+03 Score=28.52 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 329 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiema 329 (375)
...+=+|.++--|..-|..-...-+.--.=.++.+.+.++.--.|+.|+......+.+.+..+..+...-
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k 459 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELK 459 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHH
Confidence 3445566666555443332111111111123444555555556677777777777777776666555443
No 176
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.08 E-value=2.5e+02 Score=21.30 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 325 LIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 325 LiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
+-.|-.....+..+...+...+..|...|..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444555555555555555555554
No 177
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=29.93 E-value=4.5e+02 Score=24.98 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 306 ELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 306 kLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
.|.-|..-..+=-..++..|..|.+....+..+++....|++.|-.+=|.|-.
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 35556666666667888999999999999999999999999999999999974
No 178
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.54 E-value=2.3e+02 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHH
Q 017209 136 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDV 177 (375)
Q Consensus 136 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dI 177 (375)
.-|.||.++-+...++-....+++-..|.+|...-+....++
T Consensus 117 N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~ 158 (176)
T PF12999_consen 117 NTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREEL 158 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555544444445444444444443333333
No 179
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.74 E-value=5.5e+02 Score=24.90 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 265 LRLQLTADGEKFQQFQDALVKSNEVFETFK--QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 265 Lr~QL~~Y~eKFeEFQdTL~KSNevF~tFK--kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
+..++..|+ +.+|.+|.-+...+..+- .+|+++-+.|..+|......+.+.-.+..+....+..|.....++..+
T Consensus 3 ~~~~~~~~~---d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 3 LSKKLSFYM---DSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555554 445566666555544332 589999999999999999999999999999999999999888887654
No 180
>PRK04406 hypothetical protein; Provisional
Probab=28.60 E-value=3.2e+02 Score=22.09 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 297 IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 297 MEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
|+.|..+|-.||--....-.-.+..|..+.. ..++|+.|..-|+.|-..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~--------------Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQ--------------QQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 5556677777777666666555666665554 445556666666666443
No 181
>PRK11020 hypothetical protein; Provisional
Probab=28.42 E-value=2.1e+02 Score=25.41 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQ 338 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke 338 (375)
..+++..|..|+++++++|-+|---...- .-+--+.|.+|.--|...+.+
T Consensus 29 d~~~i~qf~~E~~~l~k~I~~lk~~~~~~---lske~~~l~~lpF~R~iTK~E 78 (118)
T PRK11020 29 DAEKYAQFEKEKATLEAEIARLKEVQSQK---LSKEAQKLMKLPFSRAITKKE 78 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCcchhccHHH
Confidence 45699999999999999998874333222 222234566665555544444
No 182
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.26 E-value=7.6e+02 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHH
Q 017209 129 AVRDKLESLCRELQRQNKMLMDEC 152 (375)
Q Consensus 129 ~~K~KLE~LCRELQkqNK~lKEE~ 152 (375)
.++.++..|.++|...+....++.
T Consensus 255 ~a~~~i~~L~~~l~~l~~~~~~~l 278 (582)
T PF09731_consen 255 HAKERIDALQKELAELKEEEEEEL 278 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777776655555443
No 183
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.87 E-value=1.3e+02 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 316 SKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLC 353 (375)
Q Consensus 316 ~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LC 353 (375)
.-++.+.+.|-+|+..|+.+...+..|..+|-.+|+-.
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsY 47 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFEGSY 47 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34688999999999999999999999999999888643
No 184
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.78 E-value=1.1e+03 Score=27.88 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=81.3
Q ss_pred HHhHHHHHHHHH---HHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHH
Q 017209 131 RDKLESLCRELQ---RQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQ-KDDCLSQLKENEMLRTNLKQLA 206 (375)
Q Consensus 131 K~KLE~LCRELQ---kqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~-~~~~~k~~eEN~~LreKLK~Li 206 (375)
-++||.+.--|| .+...+++...+.......-+.. -| +|.||-..-.-. -..+..++.+|..|.++|+.=+
T Consensus 919 ls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq---~F--AL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL 993 (1480)
T COG3096 919 LSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQ---AF--ALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRL 993 (1480)
T ss_pred HHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHhhcccccchhhhhhcccchhhHHHHHHH
Confidence 578888888888 56777777766544333222111 11 233332111101 1223334567777777777777
Q ss_pred HHHhhHHHHHHHHHhHHHHHH-HHH----------HHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 017209 207 DQYALTEQQYAQKLKQKTLEL-QIG----------ELKIKQHEEKLVQEQSQMKLYA--EQVSQLLATEKNLRLQLTADG 273 (375)
Q Consensus 207 eQYElRE~h~~k~lK~KeLE~-QL~----------~AKleq~~e~~~~Ek~q~k~l~--eqv~~l~~tE~eLr~QL~~Y~ 273 (375)
+|.+.--..-..+++++.-+. +|+ ++|++-.++. .+|-..+-.-+ -...-....-.+|..+|..--
T Consensus 994 ~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El-~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~R 1072 (1480)
T COG3096 994 EQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNEL-QQELQDIGVRADSGAEERARIRRDELHAQLSTNR 1072 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccH
Confidence 777643222233344443322 111 2222211111 01100000000 000111223344444554433
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 274 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 317 (375)
Q Consensus 274 eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K 317 (375)
.+-.++..+| +..--||+.+.++|+++|++-..++.-
T Consensus 1073 sRr~~~Ekql-------T~~E~E~~~L~~~~rK~ErDY~~~Re~ 1109 (1480)
T COG3096 1073 SRRNQLEKQL-------TFCEAEMDNLTRKLRKLERDYFEMREQ 1109 (1480)
T ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333333332 344579999999999999998776543
No 185
>PF13990 YjcZ: YjcZ-like protein
Probab=27.74 E-value=6.4e+02 Score=25.38 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 017209 174 IKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQ 228 (375)
Q Consensus 174 L~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~Q 228 (375)
|..|...+..-.........--..|++.|..+.++|..|-.+.++.+-+.+|.++
T Consensus 71 LT~vnq~L~~l~~~~~~~a~~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~ 125 (270)
T PF13990_consen 71 LTRVNQRLTELQQDVARLAQYSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQ 125 (270)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444443322222222344669999999999999999999999999998874
No 186
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.34 E-value=3.9e+02 Score=26.95 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 247 QMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 316 (375)
Q Consensus 247 q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~ 316 (375)
.+..+...+..+...=.....+...........+..|..++.+..++-.|-.+=+..+..|+.....+-.
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence 3344444555544444444444555556666777778888888888877777777777777666655543
No 187
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.98 E-value=3.2e+02 Score=21.63 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL 339 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~ 339 (375)
..-..|...+..|...|..-. . .=|...|..|..-+..+...|..+..+...+....+.+...+....-++..++.-.
T Consensus 19 ~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~ 96 (123)
T PF02050_consen 19 EQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666555544 3 44567788888888888888888888999999888888888888777766555544
Q ss_pred H
Q 017209 340 E 340 (375)
Q Consensus 340 e 340 (375)
+
T Consensus 97 e 97 (123)
T PF02050_consen 97 E 97 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=26.97 E-value=5.4e+02 Score=24.26 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 017209 168 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLR---TNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEE 239 (375)
Q Consensus 168 ekFq~tL~dIq~~meE~~~~~~k~~eEN~~Lr---eKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e 239 (375)
..+++.|.|++..+++-. .||..|+ -+-..-+..|+-.+-.+..++....-|+.-...+|-..+.
T Consensus 15 ~~L~n~l~elq~~l~~l~-------~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 15 KELQNELAELQRKLQELR-------KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776543 4555443 4555567999999999999888888787666666554433
No 189
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=26.62 E-value=2.8e+02 Score=32.15 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 322 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~sn 322 (375)
+..|++++.|++.+|+++......|..+-+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~ 956 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPN 956 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 689999999999999999999999874433
No 190
>PRK09039 hypothetical protein; Validated
Probab=26.56 E-value=7e+02 Score=25.40 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSK-NQKEKLESLCRSL 356 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~k-kq~ekLE~LCRaL 356 (375)
++---...+.+|+-+...+-.|+-+......+-......|.++- ..+.... .+...|..++..+
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~-------~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG-------RRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHH
Confidence 33334566777777777777777777777766644444444432 2222222 1355556555555
No 191
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.46 E-value=6.4e+02 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017209 334 RMKKQLEKSKNQKEKLESLCRSLQAERKQ 362 (375)
Q Consensus 334 ~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~ 362 (375)
.+..+...++.++..|+.-...+..++..
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666777777777777776543
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.09 E-value=8.7e+02 Score=26.39 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH---
Q 017209 263 KNLRLQLTADGEKFQQFQD-ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQ--- 338 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQd-TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke--- 338 (375)
..|-.|..+|...+.++.. -|.+=+.-|....+|.........-++++....-+|.-+.+..+-+...+.....+.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 017209 339 --------LEKSKNQKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 339 --------~e~~kkq~ekLE~LCRaLQ~ER~~~ 363 (375)
...+++..+.+...|++++.+-+.+
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dL 440 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDL 440 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 193
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.88 E-value=4.1e+02 Score=22.47 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017209 259 LATEKNLRLQLTADGEKFQQFQD 281 (375)
Q Consensus 259 ~~tE~eLr~QL~~Y~eKFeEFQd 281 (375)
..+-..|..++..+...-.+|..
T Consensus 12 ~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 12 QQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444344333
No 194
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.70 E-value=3.5e+02 Score=21.60 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHH
Q 017209 134 LESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKL 181 (375)
Q Consensus 134 LE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~m 181 (375)
|=.+|.+|..+|..+..+... ...-|..+.++-..+-..|.+-|
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~----~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKT----WREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 335699999999999887544 44455556666555555554443
No 195
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.45 E-value=6.9e+02 Score=24.94 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH-HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAF-LKSKC-EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~-~K~K~-E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
-++.++.+|+.++..-..+... +..++ .....+++.++-++..+.+++...+.-++.|+.-+..|.++
T Consensus 146 ~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 146 MRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788887777553333322 33343 34566778888888888877766655555555555544444
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.29 E-value=7e+02 Score=24.97 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=5.7
Q ss_pred hhHhHHHHHHH
Q 017209 162 LRLDLSAKFQD 172 (375)
Q Consensus 162 kRkelsekFq~ 172 (375)
-|..|...|+.
T Consensus 116 ~r~~m~~q~~~ 126 (325)
T PF08317_consen 116 MRLLMDNQFQL 126 (325)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 197
>PLN02939 transferase, transferring glycosyl groups
Probab=24.74 E-value=1.2e+03 Score=27.59 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVK 285 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~K 285 (375)
+...-.++..++.+|.+-.++||++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999987
No 198
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=24.68 E-value=5.3e+02 Score=23.37 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHH-HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHh--hHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 017209 126 AAM-AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNL--RLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNL 202 (375)
Q Consensus 126 kai-~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~k--RkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKL 202 (375)
+++ ++.+.|.+|--.|+..|.++..=..+ +... ...+.+........-...|.+... +...-+++++++.
T Consensus 59 ~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~----e~~~~~~~~l~~~~~~~~~~we~f~~e~~~---~~~~vdee~~~~~ 131 (145)
T PF14942_consen 59 RCIELMQQNLEQLLERLQAANSMCSRLQQK----EQEKQKDDYLQANREQRKQEWEEFMKEQQQ---KKQRVDEEFREKE 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 443 55889999999998888887644322 2222 222444444444444444444433 3356888899999
Q ss_pred HHHHHHHhhH
Q 017209 203 KQLADQYALT 212 (375)
Q Consensus 203 K~LieQYElR 212 (375)
..|.+||-.-
T Consensus 132 ~~l~e~Y~~~ 141 (145)
T PF14942_consen 132 ERLKEQYSEM 141 (145)
T ss_pred HHHHHHHHHH
Confidence 9999999753
No 199
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=24.60 E-value=2.7e+02 Score=32.73 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEKSDF------TLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~------aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
-+..|.+++.+.+.+|+|+...+..+..+.+. .+++.+.++ ++..+.++..|+..+-.|..
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~k------l~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRAR------AEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 37799999999999999999999998766655 555544433 23444455555555555543
No 200
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.49 E-value=8.1e+02 Score=25.47 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
+...|.+|+.-=...-.||+.+.. .+..|--++--+.+.||.|...+.+|--
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr----------~h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKR----------LHQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655556788887553 4556778888899999999999887753
No 201
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.15 E-value=5.2e+02 Score=25.93 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
.-|.=|++|--.|+.|+.||..|..+++....---.++.+...+...++.+..-+
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455689999999999999999988887765555555666666666666554443
No 202
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.96 E-value=6.4e+02 Score=24.07 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 276 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRS 355 (375)
Q Consensus 276 FeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRa 355 (375)
.+...++..+++..=....+.+++.......|.-+...+....+......-.+...-....+++..+..+++.++..-+.
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 017209 356 L 356 (375)
Q Consensus 356 L 356 (375)
|
T Consensus 103 l 103 (251)
T PF11932_consen 103 L 103 (251)
T ss_pred H
No 203
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=23.81 E-value=4.8e+02 Score=29.39 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh-----HHHHHHHHHHHHHHHHHhhhhhhhhhHHH-----HHHHHHHHH
Q 017209 134 LESLCRELQRQNKMLMDECKRVSSEGQNLRLD-----LSAKFQDAIKDVSIKLEEQKDDCLSQLKE-----NEMLRTNLK 203 (375)
Q Consensus 134 LE~LCRELQkqNK~lKEE~~~~~~eee~kRke-----lsekFq~tL~dIq~~meE~~~~~~k~~eE-----N~~LreKLK 203 (375)
...+|.+|+.....|.+....+..+-+.-|+| |..=|...+.+|+..++..-.--.+.... +..-..+|.
T Consensus 233 fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~ 312 (683)
T PF08580_consen 233 FPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLS 312 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH
Q ss_pred HHHHHHhhHHHHHHHHH
Q 017209 204 QLADQYALTEQQYAQKL 220 (375)
Q Consensus 204 ~LieQYElRE~h~~k~l 220 (375)
.-|+.|+..--||-.++
T Consensus 313 ~~i~s~~~k~~~~~~~I 329 (683)
T PF08580_consen 313 KQIESKEKKKSHYFPAI 329 (683)
T ss_pred HHHHHHHHHHhccHHHH
No 204
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=23.76 E-value=2.7e+02 Score=25.20 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEK---MAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEK---MsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
..||.||.-|.+..+=-. -|==+|. +.-..+.|.||...|+..|+..--.+
T Consensus 55 ~~lr~~L~~YLD~IKm~R------------AkY~lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~m 108 (132)
T PF09432_consen 55 EELRAQLDRYLDDIKMER------------AKYSLENKYSLQDTLNQLTKEVNYWRKEWDNIEMLM 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887665211 1111221 24577889999999999999765444
No 205
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.64 E-value=9.8e+02 Score=26.09 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 017209 136 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ 215 (375)
Q Consensus 136 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h 215 (375)
.+|==-=+||+..|+-..++...-+.. .....+|.|+|..++....+...-.-|--.|..+|+.--.=-++||--
T Consensus 228 ~gcw~ay~Qnk~akehv~km~kdle~L-----q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~ 302 (575)
T KOG4403|consen 228 GGCWFAYRQNKKAKEHVNKMMKDLEGL-----QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGV 302 (575)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcch
Confidence 456666688999988877776664331 234567888888887554433222334456778888666666677766
Q ss_pred HHHHHhHHHHHH
Q 017209 216 YAQKLKQKTLEL 227 (375)
Q Consensus 216 ~~k~lK~KeLE~ 227 (375)
-....+ |+||.
T Consensus 303 e~e~~r-kelE~ 313 (575)
T KOG4403|consen 303 ENETSR-KELEQ 313 (575)
T ss_pred hHHHHH-HHHHH
Confidence 666666 66665
No 206
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.57 E-value=8.2e+02 Score=25.21 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 017209 296 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE--------KSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e--------~~kkq~ekLE~LCRaLQ~E 359 (375)
-+....-.+-.|.+++..|+.-|..+...|-+++.++..++.++= ..+.||..|..+...++..
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 344444455556666666666677777777777776666665531 2344555555556655553
No 207
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.52 E-value=1e+03 Score=26.20 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK 294 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFK 294 (375)
|..|...-..||++-++-+-...+.|++--+.+.++|
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777888888888888888888888888777
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.50 E-value=9.7e+02 Score=25.98 Aligned_cols=56 Identities=13% Similarity=0.386 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
..+..||..-...|..+...+....-+|.....+++.+.+.+..++++-..+....
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l 402 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL 402 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999999999999999999999999999999988877665443
No 209
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.37 E-value=4.7e+02 Score=24.42 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHHhhHhHHH-HHHHHHHHHHHHHHhhhhh-----------------hhhhHHHHHHHHHHHHHHH
Q 017209 145 NKMLMDECKRVSSEGQNLRLDLSA-KFQDAIKDVSIKLEEQKDD-----------------CLSQLKENEMLRTNLKQLA 206 (375)
Q Consensus 145 NK~lKEE~~~~~~eee~kRkelse-kFq~tL~dIq~~meE~~~~-----------------~~k~~eEN~~LreKLK~Li 206 (375)
|-.+.-.+...+......|++..- .-.-+|.||-..++..... ...+...|..|..++..|.
T Consensus 52 Ns~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 52 NAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHhHHH
Q 017209 207 DQYALTEQQYAQKLKQKT 224 (375)
Q Consensus 207 eQYElRE~h~~k~lK~Ke 224 (375)
..+..-++.|..++.-.+
T Consensus 132 ~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 132 QRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
No 210
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=23.30 E-value=4e+02 Score=21.49 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 017209 276 FQQFQDALVKSNEVFETFKQEIEKMAKSI 304 (375)
Q Consensus 276 FeEFQdTL~KSNevF~tFKkEMEKMsKKi 304 (375)
|++|..-++..=..+.+++.|+++..+.+
T Consensus 8 ~d~~~~~~~~~~~~~~~~~~e~e~~~r~~ 36 (79)
T PF04380_consen 8 FDDLAKQISEALPAAQGPREEIEKNIRAR 36 (79)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44444444444444455666665554433
No 211
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.28 E-value=5e+02 Score=22.60 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 305 KELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 305 KkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
..||.....+-.........+.++++|++.+.-+-+.++..+..++
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555566666667788999999988888777777766553
No 212
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.96 E-value=1.2e+03 Score=26.73 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=45.7
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017209 283 LVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQ 362 (375)
Q Consensus 283 L~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~ 362 (375)
|.|.-.+.-+=..|+|-|---|++|+-|+..|....|-. ..+.-+.|++ +.+-++.++...+.=-+|=|.|-.-.+.
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~--~rLk~iae~q-leEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA--ARLKEIAEKQ-LEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333333333334455555556788999999999887754 3344555554 5555566666555555666666554443
No 213
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.76 E-value=6.8e+02 Score=23.97 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEKS--------DFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~s--------n~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ 357 (375)
..+.=.+-+.+||++|+.|....+...-.+ ....+.....+-..+.+++.+..++..|+.+.-+++
T Consensus 22 ~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 22 RIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444332111 112222333344455555555555555555555544
No 214
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=22.73 E-value=2e+02 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 311 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 311 n~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
...|+...+..|..|+++..+|...-.++..+++.
T Consensus 2 l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 2 IDTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999887765
No 215
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.59 E-value=9e+02 Score=27.33 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 017209 136 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ 215 (375)
Q Consensus 136 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h 215 (375)
+.-|||.+-.+-.-||..+ +|.--.-+-|..+...+-|+..... |-++|++--..|+.||| ||.-
T Consensus 11 sIYREfErlIh~~~Ee~VK----------eLMPLVVNVLEnLD~v~~EnqEhev----ELElLrEDNEQl~tqYE-rEka 75 (832)
T KOG2077|consen 11 SIYREFERLIHCYDEEVVK----------ELMPLVVNVLENLDSVLSENQEHEV----ELELLREDNEQLITQYE-REKA 75 (832)
T ss_pred HHHHHHHHHHHhccHHHHH----------HHHHHHHHHHHHHHHHhhccchhHH----HHHHHhhhHHHHHHHHH-HHHH
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 216 YAQKLKQKTLELQIGELKIKQHEEKLVQEQS----------QMKLYAEQVSQLLATEKNLRLQLTADGEKFQQF 279 (375)
Q Consensus 216 ~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~----------q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEF 279 (375)
+..++.+|-+|. .++=..+..+.-.++.+ ..+.|.-+++.+-++|.+.+-..+...++|.++
T Consensus 76 lR~q~eqKfie~--eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem 147 (832)
T KOG2077|consen 76 LRTQLEQKFIEG--EDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEM 147 (832)
T ss_pred HHHHHHhhhcch--HHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhh
No 216
>PLN02943 aminoacyl-tRNA ligase
Probab=22.51 E-value=2.9e+02 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEK 320 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~ 320 (375)
+..|.+++.|++.+|+++......|..+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN 914 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSS 914 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999998644
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.35 E-value=6.4e+02 Score=23.51 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017209 330 EERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 330 eEr~~~~ke~e~~kkq~ekLE~ 351 (375)
++|+.+-.+++.++.++..|.+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKK 124 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444443
No 218
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=21.97 E-value=6.9e+02 Score=23.74 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017209 143 RQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYA 217 (375)
Q Consensus 143 kqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~ 217 (375)
...-.|.+.+.....+-+..|.++...|..-+++++..+-+.. .+...|+..|+.+-+-+..++.+-.
T Consensus 18 ~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~-------k~~~~l~~eLq~l~~~~~~k~~qe~ 85 (206)
T PF14988_consen 18 KKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKE-------KEQAKLQQELQALKEFRRLKEQQER 85 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555666677788899999999999998887543 3566788888888888877766544
No 219
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.91 E-value=4.3e+02 Score=21.32 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=38.6
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHhH------------HHHHHHhHHHHHHHHHHHhhHHHHH
Q 017209 99 SSKRTFKSEKEFLEFTLKYQQVLAERDA------------AMAVRDKLESLCRELQRQNKMLMDE 151 (375)
Q Consensus 99 ~~k~~~klek~~~~~~~~~~qv~~Er~k------------ai~~K~KLE~LCRELQkqNK~lKEE 151 (375)
...++..|.|+...|.-++.-+.....+ -|-+|.-+++|-|||+.-.+.|.+-
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999998888877654443 3567777888888888777766554
No 220
>PLN02381 valyl-tRNA synthetase
Probab=21.71 E-value=3.1e+02 Score=32.32 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 322 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E~sn 322 (375)
+..|.+++.|++.+|+++...+..|..+.+
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~ 1024 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASG 1024 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 689999999999999999999998865544
No 221
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.52 E-value=6.9e+02 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 017209 191 QLKENEMLRTNLKQLAD 207 (375)
Q Consensus 191 ~~eEN~~LreKLK~Lie 207 (375)
...++..|+.++..+++
T Consensus 32 ~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 32 LKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677777777766
No 222
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.31 E-value=1.3e+03 Score=26.59 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 017209 251 YAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 251 l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemae 330 (375)
+.+++..+...-..|...|..+.+..+.++.-|.-+...+..++.+++-..+.-..+|-+....+..++.....+-..-.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44455555555556666666677777777777777777777777777766666666677666666666666655555545
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 017209 331 ERERMKKQLEKSKNQKE-------KLESLCRSLQAE 359 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~e-------kLE~LCRaLQ~E 359 (375)
|...+...+..+...++ -+..=|+.|+.+
T Consensus 674 E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e 709 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKERALSEELEAKCRELEEE 709 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 55555555555544444 345557777776
No 223
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.19 E-value=8.3e+02 Score=24.38 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH
Q 017209 264 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSK 343 (375)
Q Consensus 264 eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~k 343 (375)
+|+.-+....+||++.+ +|-+.+-+..-.||-+-....-+..........+-+.+..+..++..++
T Consensus 132 d~ke~~ee~kekl~E~~--------------~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQ--------------KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q ss_pred HHHHHHH
Q 017209 344 NQKEKLE 350 (375)
Q Consensus 344 kq~ekLE 350 (375)
+..+-|+
T Consensus 198 ~r~~ELe 204 (290)
T COG4026 198 KRWDELE 204 (290)
T ss_pred HHHHHhc
No 224
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=21.06 E-value=2.5e+02 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 312 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 312 ~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
..++...+..|..|+++..+|...-.++..++..
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999888876
No 225
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.72 E-value=8.7e+02 Score=24.43 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=10.2
Q ss_pred HHHHHHh-HHHHHHHHHHH
Q 017209 127 AMAVRDK-LESLCRELQRQ 144 (375)
Q Consensus 127 ai~~K~K-LE~LCRELQkq 144 (375)
+..+|+= ||.||-=.|.-
T Consensus 120 S~~~RS~yLe~Lc~IIqeL 138 (269)
T PF05278_consen 120 SQQFRSYYLECLCDIIQEL 138 (269)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4455554 57777655443
No 226
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.66 E-value=4.4e+02 Score=20.98 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017209 300 MAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 300 MsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~ 363 (375)
|..+|-.||--....-.-.+..|..+.. ..++|+.|...|+.|-..-...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~--------------Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTA--------------HEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777776666655555555555553 5556677777777776554443
No 227
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=20.41 E-value=1.6e+03 Score=27.47 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=16.8
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhh
Q 017209 159 GQNLRLDLSAKFQDAIKDVSIKLEEQ 184 (375)
Q Consensus 159 ee~kRkelsekFq~tL~dIq~~meE~ 184 (375)
...+++++.+.|+....+....+++.
T Consensus 897 ~~s~~~e~~~~~~~~~~~l~e~~s~~ 922 (1294)
T KOG0962|consen 897 LDSKVKELLERIQPLKVELEEAQSEK 922 (1294)
T ss_pred HHHHHHhhHhhhcchhhhHHHHHHHH
Confidence 45567777888877776655555433
No 228
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.19 E-value=1.4e+03 Score=26.56 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 017209 174 IKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEE 239 (375)
Q Consensus 174 L~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e 239 (375)
+.|..++++..-.... .+--.+.+|+-+|.++.++-|.|...-++.-.|. ..+|++++-.+
T Consensus 89 ~~d~ndklE~~Lankd---a~lrq~eekn~slqerLelaE~~l~qs~rae~lp--eveael~qr~~ 149 (916)
T KOG0249|consen 89 IHDLNDKLENELANKD---ADLRQNEEKNRSLQERLELAEPKLQQSLRAETLP--EVEAELAQRNA 149 (916)
T ss_pred cccchHHHHHHHhCcc---hhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhh--hhHHHHHHHHH
Confidence 4566666654422221 1222367889999999999999988877733322 35666665433
Done!