Query 017209
Match_columns 375
No_of_seqs 122 out of 155
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.1 0.14 4.7E-06 44.7 40.3 23 101-123 6-28 (284)
2 1i84_S Smooth muscle myosin he 96.8 0.006 2E-07 68.3 11.5 6 27-32 684-689 (1184)
3 1i84_S Smooth muscle myosin he 95.9 0.028 9.6E-07 62.9 10.4 32 291-322 1077-1108(1184)
4 1c1g_A Tropomyosin; contractIl 95.5 1.2 4E-05 38.7 39.2 28 298-325 212-239 (284)
5 3na7_A HP0958; flagellar bioge 95.4 1.7 5.7E-05 40.5 21.8 106 253-363 60-169 (256)
6 3vkg_A Dynein heavy chain, cyt 95.2 9 0.00031 47.7 30.4 91 263-353 2017-2107(3245)
7 2v66_B Nuclear distribution pr 93.5 2.8 9.5E-05 35.3 14.3 86 255-340 5-101 (111)
8 3u1c_A Tropomyosin alpha-1 cha 93.4 2.7 9.4E-05 34.3 15.6 88 263-350 12-99 (101)
9 3u59_A Tropomyosin beta chain; 92.4 3.8 0.00013 33.2 15.0 88 263-350 12-99 (101)
10 3tnu_B Keratin, type II cytosk 92.3 0.94 3.2E-05 38.3 9.8 83 271-356 12-94 (129)
11 3na7_A HP0958; flagellar bioge 90.9 9.9 0.00034 35.2 19.6 58 302-359 90-147 (256)
12 3tnu_A Keratin, type I cytoske 90.6 1.3 4.4E-05 37.6 9.0 83 271-356 14-96 (131)
13 3oja_B Anopheles plasmodium-re 89.2 6.2 0.00021 39.8 14.2 54 292-345 527-580 (597)
14 3trt_A Vimentin; cytoskeleton, 87.4 2.1 7.2E-05 32.8 7.3 45 271-315 32-76 (77)
15 3ghg_A Fibrinogen alpha chain; 85.2 9 0.00031 40.0 12.6 92 258-353 55-154 (562)
16 3oja_B Anopheles plasmodium-re 84.2 27 0.00092 35.1 15.7 64 258-321 507-570 (597)
17 2dfs_A Myosin-5A; myosin-V, in 84.1 19 0.00065 40.3 15.7 65 290-357 986-1050(1080)
18 2fxo_A Myosin heavy chain, car 84.1 18 0.00061 30.4 18.9 90 248-351 36-125 (129)
19 2v4h_A NF-kappa-B essential mo 83.1 17 0.00059 30.5 11.3 77 273-349 30-109 (110)
20 2dfs_A Myosin-5A; myosin-V, in 82.2 57 0.002 36.5 18.5 33 298-330 1019-1051(1080)
21 1ic2_A Tropomyosin alpha chain 82.2 13 0.00046 28.8 9.9 64 263-326 9-72 (81)
22 1ic2_A Tropomyosin alpha chain 80.9 6.2 0.00021 30.7 7.5 59 297-355 1-59 (81)
23 3u59_A Tropomyosin beta chain; 77.7 26 0.00089 28.2 15.0 56 253-308 44-99 (101)
24 3jsv_C NF-kappa-B essential mo 75.7 15 0.00052 30.1 8.5 83 269-351 4-89 (94)
25 2jee_A YIIU; FTSZ, septum, coi 75.1 30 0.001 27.6 11.6 42 286-327 4-45 (81)
26 3hnw_A Uncharacterized protein 74.8 25 0.00087 30.1 10.3 54 290-350 77-130 (138)
27 3vkg_A Dynein heavy chain, cyt 69.9 2.3E+02 0.008 35.7 28.1 21 108-128 1895-1915(3245)
28 1go4_E MAD1 (mitotic arrest de 69.7 7.8 0.00027 32.1 5.5 71 286-358 10-96 (100)
29 3oja_A Leucine-rich immune mol 68.1 95 0.0032 30.5 15.2 58 266-330 413-470 (487)
30 2v71_A Nuclear distribution pr 68.1 71 0.0024 29.0 23.2 128 198-340 15-154 (189)
31 3u1c_A Tropomyosin alpha-1 cha 66.3 50 0.0017 26.6 15.6 56 253-308 44-99 (101)
32 2v71_A Nuclear distribution pr 63.3 88 0.003 28.4 14.7 40 285-324 39-85 (189)
33 2jee_A YIIU; FTSZ, septum, coi 61.1 61 0.0021 25.8 10.7 73 274-346 6-78 (81)
34 2v66_B Nuclear distribution pr 59.0 50 0.0017 27.7 8.6 26 299-324 7-32 (111)
35 3hnw_A Uncharacterized protein 54.2 1E+02 0.0035 26.3 11.0 31 328-358 101-131 (138)
36 3oja_A Leucine-rich immune mol 53.8 1.7E+02 0.0058 28.6 14.5 53 304-356 423-479 (487)
37 3jsv_C NF-kappa-B essential mo 48.7 1.1E+02 0.0038 25.0 10.0 77 232-322 9-88 (94)
38 3m91_A Proteasome-associated A 47.4 41 0.0014 24.5 5.5 39 263-301 12-50 (51)
39 3sja_C Golgi to ER traffic pro 47.2 52 0.0018 25.2 6.2 49 104-152 9-59 (65)
40 2eqb_B RAB guanine nucleotide 47.1 96 0.0033 25.4 8.2 82 264-345 9-91 (97)
41 2efr_A General control protein 45.6 1.6E+02 0.0054 25.9 22.5 54 296-349 99-152 (155)
42 1m1j_C Fibrinogen gamma chain; 45.3 2.5E+02 0.0085 28.1 13.3 21 337-357 112-132 (409)
43 2w6b_A RHO guanine nucleotide 43.9 62 0.0021 24.1 5.9 38 128-165 13-50 (56)
44 3q8t_A Beclin-1; autophagy, AT 42.8 1.3E+02 0.0044 24.1 14.5 57 295-351 39-95 (96)
45 1deq_A Fibrinogen (alpha chain 42.6 2.8E+02 0.0094 27.9 13.7 38 314-351 118-155 (390)
46 2e7s_A RAB guanine nucleotide 42.2 76 0.0026 27.4 7.3 63 303-365 68-131 (135)
47 1ez3_A Syntaxin-1A; three heli 42.1 1.3E+02 0.0045 24.0 10.0 26 196-221 98-123 (127)
48 3r2p_A Apolipoprotein A-I; amp 40.8 1.8E+02 0.0062 25.3 10.9 19 260-278 155-173 (185)
49 1x79_B RAB GTPase binding effe 40.6 1.6E+02 0.0055 24.6 11.9 92 255-349 8-103 (112)
50 3ghg_A Fibrinogen alpha chain; 39.4 2.8E+02 0.0096 29.1 12.1 56 291-351 134-190 (562)
51 2ocy_A RAB guanine nucleotide 37.4 2.1E+02 0.0073 25.1 19.5 65 301-365 78-143 (154)
52 3bas_A Myosin heavy chain, str 37.3 1.5E+02 0.0051 23.3 9.8 65 299-363 11-75 (89)
53 2fxo_A Myosin heavy chain, car 36.8 1.8E+02 0.0062 24.1 17.6 9 224-232 80-88 (129)
54 3iv1_A Tumor susceptibility ge 36.1 1.6E+02 0.0054 23.2 9.7 70 194-284 8-77 (78)
55 3o0z_A RHO-associated protein 35.8 2.4E+02 0.0081 25.2 19.2 134 94-229 6-152 (168)
56 3s9g_A Protein hexim1; cyclin 33.9 2E+02 0.0069 23.8 8.6 55 106-160 35-89 (104)
57 3a7p_A Autophagy protein 16; c 33.5 2.5E+02 0.0085 24.7 11.9 33 286-318 101-133 (152)
58 2yy0_A C-MYC-binding protein; 33.4 71 0.0024 23.2 4.9 34 287-320 18-51 (53)
59 3s4r_A Vimentin; alpha-helix, 31.2 2E+02 0.0068 22.9 9.5 64 139-205 26-89 (93)
60 1a92_A Delta antigen; leucine 27.9 71 0.0024 23.3 3.9 25 126-150 8-32 (50)
61 2v4h_A NF-kappa-B essential mo 27.3 2.7E+02 0.0094 23.2 13.0 45 261-319 63-107 (110)
62 3l4q_C Phosphatidylinositol 3- 24.9 3.7E+02 0.013 23.9 13.6 114 118-233 4-137 (170)
63 2d1l_A Metastasis suppressor p 24.0 4.5E+02 0.015 24.6 11.1 67 290-361 133-200 (253)
64 1hjb_A Ccaat/enhancer binding 23.9 2E+02 0.007 22.8 6.4 40 327-366 40-79 (87)
65 1s94_A S-syntaxin; three helix 23.1 3.5E+02 0.012 23.0 9.8 79 129-223 78-156 (180)
66 3cve_A Homer protein homolog 1 23.0 2.6E+02 0.0091 21.6 9.6 60 298-357 3-66 (72)
67 2eqb_B RAB guanine nucleotide 22.8 3.1E+02 0.011 22.4 13.5 29 297-325 7-35 (97)
68 2d8d_A Aroag, phospho-2-dehydr 22.5 1.8E+02 0.006 22.4 5.8 36 311-346 5-40 (90)
69 1zhc_A Hypothetical protein HP 22.3 1.8E+02 0.0061 22.3 5.7 64 281-352 10-73 (76)
70 3sjb_C Golgi to ER traffic pro 22.3 2.5E+02 0.0085 22.8 6.7 51 101-151 23-75 (93)
71 1x8y_A Lamin A/C; structural p 21.9 2.8E+02 0.0097 21.5 10.2 55 292-346 25-79 (86)
72 1lwu_C Fibrinogen gamma chain; 21.5 2.1E+02 0.0071 27.8 7.3 17 337-353 40-56 (323)
73 3k66_A Beta-amyloid-like prote 21.0 3.6E+02 0.012 25.4 8.4 45 133-177 32-76 (239)
74 3cvf_A Homer-3, homer protein 20.8 3.1E+02 0.011 21.5 8.7 63 296-358 7-73 (79)
75 1m1j_A Fibrinogen alpha subuni 20.5 7.1E+02 0.024 25.6 15.6 93 258-353 56-155 (491)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.06 E-value=0.14 Score=44.74 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=10.8
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHH
Q 017209 101 KRTFKSEKEFLEFTLKYQQVLAE 123 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv~~E 123 (375)
|.|..|+.++-.+......+..+
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555555444444433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.76 E-value=0.006 Score=68.28 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.8
Q ss_pred cCCCCc
Q 017209 27 INPNSA 32 (375)
Q Consensus 27 ~~~~~~ 32 (375)
|-||..
T Consensus 684 IkPN~~ 689 (1184)
T 1i84_S 684 IIPNHE 689 (1184)
T ss_dssp ECCCSS
T ss_pred eCCCCc
Confidence 445543
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.87 E-value=0.028 Score=62.90 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017209 291 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSD 322 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn 322 (375)
.....++..+..+++.++.+...+..+.+...
T Consensus 1077 ~el~~el~~le~~l~~le~el~~l~~~le~l~ 1108 (1184)
T 1i84_S 1077 AELQAQIAELKAQLAKKEEELQAALARLEDET 1108 (1184)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555444443
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.45 E-value=1.2 Score=38.75 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 298 EKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
+.+...+..++.+...+....+.....+
T Consensus 212 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 239 (284)
T 1c1g_A 212 EKYSQKEDKYEEEIKVLSDKLKEAETRA 239 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.44 E-value=1.7 Score=40.46 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEER 332 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr 332 (375)
.++..+...-..++..+.-|..+... .++|.-|..+..||+-+.+++..||++...+-.+.+.....+-......
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~-----v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE-----IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555544432 3488999999999999999999999999999999998888887777766
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcC
Q 017209 333 ERMKKQLEKSKN----QKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 333 ~~~~ke~e~~kk----q~ekLE~LCRaLQ~ER~~~ 363 (375)
..+..++...+. .+..+..-...|..+|..+
T Consensus 135 ~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 135 LELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654433 3334555555555666433
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.23 E-value=9 Score=47.69 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
..+..+|..-.++..+.++.|..-++-...++.+.+........|+.+......|.+.+.+-|-.+..|+.+|.+.++.+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34455555566666677777777777777888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017209 343 KNQKEKLESLC 353 (375)
Q Consensus 343 kkq~ekLE~LC 353 (375)
..+...|-+=|
T Consensus 2097 ~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2097 NTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHHH
Confidence 99988887643
No 7
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.55 E-value=2.8 Score=35.32 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH--
Q 017209 255 VSQLLATEKNLRLQLTADGEKFQQFQD----ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-- 328 (375)
Q Consensus 255 v~~l~~tE~eLr~QL~~Y~eKFeEFQd----TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem-- 328 (375)
...|...-..|...+..|..||...+. +++.-..-.++++.+-+.|.+.|+.||-.|..+-+..=.+...|-+|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 445556667788889999999999875 45555667788888999999999999999999988877777777666
Q ss_pred -----HHHHHHHHHHHH
Q 017209 329 -----VEERERMKKQLE 340 (375)
Q Consensus 329 -----aeEr~~~~ke~e 340 (375)
++....+..+++
T Consensus 85 k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 85 RLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444444445544
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.37 E-value=2.7 Score=34.27 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
..|+.....|.+++++.+.-+...+.-...+-.|+.-+.++|..||-+......+...++..|-..-..++....++..+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999999999999999999999999999999988888888777666667777788888
Q ss_pred HHHHHHHH
Q 017209 343 KNQKEKLE 350 (375)
Q Consensus 343 kkq~ekLE 350 (375)
.++|.-|+
T Consensus 92 ~RriqllE 99 (101)
T 3u1c_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888775
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.35 E-value=3.8 Score=33.23 Aligned_cols=88 Identities=10% Similarity=0.142 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
..|+.....+.++.++.+.-+...+.-...+-.|+.-+.++|+.||-+......++..++..|-..-..++....++..+
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888999999999999999999999999999999999999999888888888877776655566677778888
Q ss_pred HHHHHHHH
Q 017209 343 KNQKEKLE 350 (375)
Q Consensus 343 kkq~ekLE 350 (375)
.++|.-|+
T Consensus 92 nRriqllE 99 (101)
T 3u59_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88777664
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.31 E-value=0.94 Score=38.28 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 271 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 271 ~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
.|..||++++....+.++...+.|.|+-.+...|..|+-|...++.........|-++-. ....++..+..++..|+
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE 88 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELE 88 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999988777777665432 22334444555555555
Q ss_pred HHHHHH
Q 017209 351 SLCRSL 356 (375)
Q Consensus 351 ~LCRaL 356 (375)
.=.+.+
T Consensus 89 ~eL~~~ 94 (129)
T 3tnu_B 89 EALQKA 94 (129)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 443333
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.92 E-value=9.9 Score=35.19 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 302 KSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 359 (375)
Q Consensus 302 KKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~E 359 (375)
+-...|.+|...++.+.......++++.+....+...++.+...+..++.-...++++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666555555555544444444
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.64 E-value=1.3 Score=37.59 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 271 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 271 ~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
.|..||++++....+.++...+.|.|+-.+...|..|+-|...++.........|-++-. ....++..++.++..|+
T Consensus 14 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 14 WFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998887777666655422 22333444444555554
Q ss_pred HHHHHH
Q 017209 351 SLCRSL 356 (375)
Q Consensus 351 ~LCRaL 356 (375)
.=.+.+
T Consensus 91 ~eL~~~ 96 (131)
T 3tnu_A 91 EQLAQL 96 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.22 E-value=6.2 Score=39.77 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
.|+++.+.+.+..+.++++...|..+.+.....+.++..|.+.+..++..+..+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777788888888888888888888888888777776666655443
No 14
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=87.41 E-value=2.1 Score=32.77 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 271 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLK 315 (375)
Q Consensus 271 ~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K 315 (375)
.|..||++++....+.++...+.|.|+-.+...+..|+-|...++
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999999999999999999999999999999999988776
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.16 E-value=9 Score=40.00 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhHhHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENA--------FLKSKCEKSDFTLIELV 329 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~--------~~K~K~E~sn~aLiema 329 (375)
|.++|.++..-|+--...|++++ .+++++|.-|+.=|+.+.++++.-- +|. .|++++.-....|..-+
T Consensus 55 LdkqErDltkrINELKnqLEdls---KnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQ---KNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777775 4555566666666666655555443 222 46666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 330 EERERMKKQLEKSKNQKEKLESLC 353 (375)
Q Consensus 330 eEr~~~~ke~e~~kkq~ekLE~LC 353 (375)
.-...|+.-|+.+..+|.+||.=+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777888887543
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.19 E-value=27 Score=35.07 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKS 321 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~s 321 (375)
+.++...++...+....+...|+.....-++.+..+++|+++|-+++....+....++......
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444445555555555566666666666666666666666666665555555544444443333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.13 E-value=19 Score=40.33 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 290 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 290 F~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ 357 (375)
-.....|++.+.+.+.++-+|...+..+++.... ++.+....+.++...++.|++.|+.+....+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666665555544442 3334444555555556666666664444443
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.11 E-value=18 Score=30.41 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 017209 248 MKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 327 (375)
Q Consensus 248 ~k~l~eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie 327 (375)
...|......+...-..|..||....+.+.+..+. .+++.+.-..||.....+..+.+.--.....
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~--------------~~~L~~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEER--------------CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666665555554432 2333444445555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 328 LVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 328 maeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
+..++..+..++..++++++-|+.
T Consensus 102 L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776653
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.14 E-value=17 Score=30.54 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 273 GEKFQQFQDALVKSNEVFETFKQEIEKMAK---SIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 273 ~eKFeEFQdTL~KSNevF~tFKkEMEKMsK---KiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 349 (375)
..++..-+..|..=..-++-++.|+.++.+ .|--|+-....++.-|..=-.+.=.++.++..+..++..++.++.+|
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 334444455555555556667777777766 67778888888888888777777788888888888888777776654
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.23 E-value=57 Score=36.52 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 017209 298 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K~E~sn~aLiemae 330 (375)
+.+..++..|++|+..++...+..+..+.+..+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355588888999999888888877766665544
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.16 E-value=13 Score=28.80 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLI 326 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLi 326 (375)
..|+.....+.++..+.+.-|...+..+..+-.|+.-+.++|..||-+......+...++.-|-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888999999999999999999999999999999999999998888887766665554
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.90 E-value=6.2 Score=30.73 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 297 IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRS 355 (375)
Q Consensus 297 MEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRa 355 (375)
|+..-|||..|.-+...|.-+++.++..+-..-........++..+++++..|+.=.-.
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888889999998888888777777777888888888888776654433
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.65 E-value=26 Score=28.20 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 308 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 308 (375)
..|..+...=..|...+..|.+.+..++.-|.-+...++..-.|+.-++.+|.-||
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444445555666666666666666666666666666666666666665554
No 24
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.72 E-value=15 Score=30.10 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 269 LTADGEKFQQFQDALVKSNEVFETFKQEIEKMA---KSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 269 L~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMs---KKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
|.-...++..-..+|..=+..++.+|.+|.++. -.|--|.-....++.=|..=-.+.=.+..++..+..++..++.+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455566667777777888888888888887 45666666777777766666666666666666666666666666
Q ss_pred HHHHHH
Q 017209 346 KEKLES 351 (375)
Q Consensus 346 ~ekLE~ 351 (375)
+.+|..
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 665544
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.09 E-value=30 Score=27.59 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 327 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLie 327 (375)
|+++|+.+-.=+..+...|.-|.-|...+|.+....+...-.
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777776665555554
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.84 E-value=25 Score=30.15 Aligned_cols=54 Identities=30% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 290 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 350 (375)
Q Consensus 290 F~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE 350 (375)
+..+..+++.+.+.+..|-.+....+-+.+.....+-+ +.+++..+++++-+|+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~-------l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE-------LKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444444 3444444444444444
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.88 E-value=2.3e+02 Score=35.68 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 017209 108 KEFLEFTLKYQQVLAERDAAM 128 (375)
Q Consensus 108 k~~~~~~~~~~qv~~Er~kai 128 (375)
+-+++|..-|..+..++...+
T Consensus 1895 ~syLeli~~y~~ll~~K~~el 1915 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKRDQL 1915 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888887766544
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.66 E-value=7.8 Score=32.08 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh--H----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK----SD--F----------TLIELVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~----sn--~----------aLiemaeEr~~~~ke~e~~kkq~ekL 349 (375)
||+-+..++.+++.+..-.-+|.+++..|..+.+. -+ . +...+| +......++.++..+++|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a--~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA--RQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH--HHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777666665 11 1 112233 333568888889999998
Q ss_pred HHHHHHHHH
Q 017209 350 ESLCRSLQA 358 (375)
Q Consensus 350 E~LCRaLQ~ 358 (375)
....+.|+.
T Consensus 88 r~~v~~lEe 96 (100)
T 1go4_E 88 RGLLRAMER 96 (100)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHHHhc
Confidence 888888765
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.13 E-value=95 Score=30.46 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 017209 266 RLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 266 r~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemae 330 (375)
...+.-|.+-+.+.|.-..+ ++.+|+.+...+.+|+.++..++.-.+..+..+.++-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNN-------AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc-------chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 33444454455555544443 45555555555555555555555555555555544433
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.06 E-value=71 Score=29.00 Aligned_cols=128 Identities=14% Similarity=0.216 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 198 LRTNLKQLADQYALTEQQYAQ-KLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKF 276 (375)
Q Consensus 198 LreKLK~LieQYElRE~h~~k-~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF 276 (375)
.+.....+..+|+.-+.-|+. +--+++||..|- + .+..+..++..+...-..|+..+..|..||
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE-~--------------eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELE-A--------------QLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555444 223445554221 1 112223344555556677778888888898
Q ss_pred HHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-------HHHHHHHHHHHH
Q 017209 277 QQFQDA----LVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-------VEERERMKKQLE 340 (375)
Q Consensus 277 eEFQdT----L~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiem-------aeEr~~~~ke~e 340 (375)
...+.- ++.=..=.++++...+.+.++|+.||-.|..+-+..=.+...|-++ ++....+..+++
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876544 4455556778999999999999999999999988876666655544 555555555554
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.32 E-value=50 Score=26.64 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 017209 253 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 308 (375)
Q Consensus 253 eqv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 308 (375)
..|..|.+.=..|...|.-|.+.+.+....|.-+....+.--.++.-++.+|.-||
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444555556666666666666666666666666667777777776665
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.32 E-value=88 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHh
Q 017209 285 KSNEVFETFKQEIEKMAKSIK-------ELKKENAFLKSKCEKSDFT 324 (375)
Q Consensus 285 KSNevF~tFKkEMEKMsKKiK-------kLEKEn~~~K~K~E~sn~a 324 (375)
-|.++=.-+-.+++...|+++ +|.-|...|+.|++.+...
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444 4556677888888777554
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.12 E-value=61 Score=25.80 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 274 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 274 eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
+=|+++..-+...=++..-.+-|++.+--+.-.|..++..++.-.+..+...-.+-+|+..|...+..+-.++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777778888888999998888889999988888888777777777777777777766655543
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.98 E-value=50 Score=27.67 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHh
Q 017209 299 KMAKSIKELKKENAFLKSKCEKSDFT 324 (375)
Q Consensus 299 KMsKKiKkLEKEn~~~K~K~E~sn~a 324 (375)
.+.-++.+|.-|...|+.|+..+...
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778899999999999887653
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.20 E-value=1e+02 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 328 LVEERERMKKQLEKSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 328 maeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ 358 (375)
.-.+-....++++.++.++..|+.=..-|++
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.84 E-value=1.7e+02 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 017209 304 IKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKN----QKEKLESLCRSL 356 (375)
Q Consensus 304 iKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kk----q~ekLE~LCRaL 356 (375)
.+++|.|...+++-|+.+...+-.+.+++..+++.+..+.+ ..++|..+|+.=
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 33344555555555555565666666666666666655444 344666666643
No 37
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=48.67 E-value=1.1e+02 Score=24.99 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 017209 232 LKIKQHEEKLVQEQSQMKLYAE---QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 308 (375)
Q Consensus 232 AKleq~~e~~~~Ek~q~k~l~e---qv~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 308 (375)
++|..+.+.+..-...+..+.+ +......+=.-|+.|+.+|.+-|. .=|..-|+|......|.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~--------------aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--------------AERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHH
Confidence 3444444444433333333333 334444666789999999987665 34566778888888888
Q ss_pred HHHHHHHHHHHhhh
Q 017209 309 KENAFLKSKCEKSD 322 (375)
Q Consensus 309 KEn~~~K~K~E~sn 322 (375)
.....+.+.....+
T Consensus 75 ~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 75 EQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777655444
No 38
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.36 E-value=41 Score=24.48 Aligned_cols=39 Identities=8% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 017209 263 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMA 301 (375)
Q Consensus 263 ~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMs 301 (375)
.+|+.++..-+.++..+.++|..+.+-....+.++++++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368888888899999999999999998889998888875
No 39
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=47.24 E-value=52 Score=25.20 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHH--HHHhHHHHHHHhHHHHHHHHHHHhhHHHHHH
Q 017209 104 FKSEKEFLEFTLKYQQVL--AERDAAMAVRDKLESLCRELQRQNKMLMDEC 152 (375)
Q Consensus 104 ~klek~~~~~~~~~~qv~--~Er~kai~~K~KLE~LCRELQkqNK~lKEE~ 152 (375)
..|.++++++..+...+- .|-.|..-++-|+.+|-.||...|+.|--|+
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444443333322 3455789999999999999999999987765
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.09 E-value=96 Score=25.44 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHH
Q 017209 264 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKS 342 (375)
Q Consensus 264 eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K-~E~sn~aLiemaeEr~~~~ke~e~~ 342 (375)
.||.+|...-..+..+..-+.+-..-+..=+.-....-....+++.|...|..- |+..|..+..---++.......+.+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444443333333222222223334555555555555433 5555555555444444444444444
Q ss_pred HHH
Q 017209 343 KNQ 345 (375)
Q Consensus 343 kkq 345 (375)
+.|
T Consensus 89 ~~q 91 (97)
T 2eqb_B 89 TEQ 91 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=45.55 E-value=1.6e+02 Score=25.88 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 296 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 349 (375)
-+.++-+.|-+||-+...++.++......|..+..+-..+...+--+.+.+.+|
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 455667777777777778888877777777766655544444444444444433
No 42
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.30 E-value=2.5e+02 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017209 337 KQLEKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 337 ke~e~~kkq~ekLE~LCRaLQ 357 (375)
..+..+..+++.|......|.
T Consensus 112 ~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 333444445555544444443
No 43
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.88 E-value=62 Score=24.12 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh
Q 017209 128 MAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD 165 (375)
Q Consensus 128 i~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke 165 (375)
-.+||-+..||.|..+-++.+.+|-+.+.+-|.--|+-
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999988877665555555544
No 44
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.81 E-value=1.3e+02 Score=24.12 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 295 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 295 kEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
.||+........|+.+-..+-+.+-.....++.+..++.-+.-++.-...++++|.+
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555566644333333345666777888889999899998888888888863
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.58 E-value=2.8e+02 Score=27.88 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 314 LKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 314 ~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
|.+++.-....|..-+..-..|..-|+.+..++.+||.
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333433333333455555666666666664
No 46
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.19 E-value=76 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017209 303 SIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSV 365 (375)
Q Consensus 303 KiKkLEKEn~~~K~K-~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~~~ 365 (375)
...+++.|...|..- |+..|..+..---++.......+.+..++.--+.+...||.+-..++.
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777654 788888888877788888888888888888888888888887665543
No 47
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=42.06 E-value=1.3e+02 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 017209 196 EMLRTNLKQLADQYALTEQQYAQKLK 221 (375)
Q Consensus 196 ~~LreKLK~LieQYElRE~h~~k~lK 221 (375)
..|+.+|+.++..|..-+..|..-++
T Consensus 98 ~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999987777766544
No 48
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=40.83 E-value=1.8e+02 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017209 260 ATEKNLRLQLTADGEKFQQ 278 (375)
Q Consensus 260 ~tE~eLr~QL~~Y~eKFeE 278 (375)
..=.+||.+|..|++.|..
T Consensus 155 ~~~e~lk~~l~Py~ee~k~ 173 (185)
T 3r2p_A 155 AHVDALRTHLAPYSDELRQ 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 3446788899999877653
No 49
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.63 E-value=1.6e+02 Score=24.62 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH----HHHHH
Q 017209 255 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL----IELVE 330 (375)
Q Consensus 255 v~~l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aL----iemae 330 (375)
+..|..+-..|+.||.--++=+.+.++.+..+++ -.+.++..+.-.+..-|..-..++..|..+..++ -.++.
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E---~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE---DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666666666666666666655554 4556666677777777777777776665554443 33444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017209 331 ERERMKKQLEKSKNQKEKL 349 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~ekL 349 (375)
.|.....++..++.-.+-|
T Consensus 85 ~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 85 SREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHhhccch
Confidence 5555555555555544444
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.40 E-value=2.8e+02 Score=29.07 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 291 ETFKQEIEKMAKSIKELKKENAFLKSKCE-KSDFTLIELVEERERMKKQLEKSKNQKEKLES 351 (375)
Q Consensus 291 ~tFKkEMEKMsKKiKkLEKEn~~~K~K~E-~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~ 351 (375)
..++.=++++..+|++||.+...-.+-|- -|..++. +..-.+-|+.++||++++.+
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~-----~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA-----REVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCC-----CCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhe-----eecchHHHHHHHHHHHHHhh
Confidence 34456688899999999999887666653 2333332 12223456777777766653
No 51
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.36 E-value=2.1e+02 Score=25.08 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017209 301 AKSIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSV 365 (375)
Q Consensus 301 sKKiKkLEKEn~~~K~K-~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~~~ 365 (375)
.+...+++.|...|..- |+..|..+..---++...+.....+..++.--+.+...||.+-..++.
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888654 899999998888888888999999999999999999999998655443
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.32 E-value=1.5e+02 Score=23.26 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017209 299 KMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 363 (375)
Q Consensus 299 KMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~ 363 (375)
+....++.++.+...++.++++.....-++-.....+..+...+..++.-.+..|..|.+.+..+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 53
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.77 E-value=1.8e+02 Score=24.10 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 017209 224 TLELQIGEL 232 (375)
Q Consensus 224 eLE~QL~~A 232 (375)
+|+.+|.++
T Consensus 80 eLe~~l~el 88 (129)
T 2fxo_A 80 QLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.15 E-value=1.6e+02 Score=23.23 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 194 ENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADG 273 (375)
Q Consensus 194 EN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~ 273 (375)
.+..|+.+|+..+.||..= ++.+ ++-.-|..--..|| ..-+..+...+.+|..-+.+|.
T Consensus 8 VeDKLRrrl~E~~~q~qaE---l~sL-rrT~~EL~~G~~KL-----------------~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 8 VSDKLRWRMKEEMDRAQAE---LNAL-KRTEEDLKKGHQKL-----------------EEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH---HHHH-HHHHHHHHhhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888888888741 1111 11111111112222 2234455566777888888888
Q ss_pred HHHHHHHHHHh
Q 017209 274 EKFQQFQDALV 284 (375)
Q Consensus 274 eKFeEFQdTL~ 284 (375)
+|-.++...|.
T Consensus 67 ~K~~EL~~~l~ 77 (78)
T 3iv1_A 67 KKDEELSSALE 77 (78)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHhc
Confidence 88887766543
No 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.76 E-value=2.4e+02 Score=25.17 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHh-------------hHHHH
Q 017209 94 ETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRV-------------SSEGQ 160 (375)
Q Consensus 94 e~~r~~~k~~~klek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~-------------~~eee 160 (375)
+......|++.-++..|-.-.-....+-+-..-.-....-+|..|||||..+..+...-... .+..-
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q 017209 161 NLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQI 229 (375)
Q Consensus 161 ~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK~KeLE~QL 229 (375)
..+.++..-+++-|.....-++.....-.+...+|..|.++|-.+-..+...+=.+. |+-|.|...|
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~--~eLKalQ~~~ 152 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN--YKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHH
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=33.93 E-value=2e+02 Score=23.77 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 017209 106 SEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQ 160 (375)
Q Consensus 106 lek~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee 160 (375)
|=+++++|..++.++..|.++.-......-.=.|||+.....|..||.+...+.+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777666654433333333345555555556666555554443
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.53 E-value=2.5e+02 Score=24.71 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 286 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 286 SNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
=++=..+..-+..-+..+.++|++||..|-.||
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667778899999999999999988
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.39 E-value=71 Score=23.20 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017209 287 NEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK 320 (375)
Q Consensus 287 NevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~ 320 (375)
..=++..+.|++.+..++..|.+++..++++.++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788899999999999999999888887664
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.22 E-value=2e+02 Score=22.87 Aligned_cols=64 Identities=20% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 017209 139 RELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQL 205 (375)
Q Consensus 139 RELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~L 205 (375)
|-|..+|+.|.-+.......+ ...+...|...|.+...+++.....+..+.-+-..|++-+..|
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 60
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=27.95 E-value=71 Score=23.26 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHHH
Q 017209 126 AAMAVRDKLESLCRELQRQNKMLMD 150 (375)
Q Consensus 126 kai~~K~KLE~LCRELQkqNK~lKE 150 (375)
+.|..|.|+|.|-|+|-+.++.||.
T Consensus 8 qWv~~Rkk~eeler~lrk~kk~iKk 32 (50)
T 1a92_A 8 QWVSGRKKLEELERDLRKLKKKIKK 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999998888764
No 61
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.29 E-value=2.7e+02 Score=23.24 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 261 TEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 261 tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
+=.-|++|+.+|..-|.- =|..-|++...+-.|.-+...+.+...
T Consensus 63 ~I~vLkaQv~IY~~DF~a--------------ERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQA--------------ERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcc--------------chhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446789999999887763 345567777777777777777766543
No 62
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.88 E-value=3.7e+02 Score=23.90 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=66.1
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHH---HHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhh---------
Q 017209 118 QQVLAERDAAMAVRDKLESLCRELQ---RQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQK--------- 185 (375)
Q Consensus 118 ~qv~~Er~kai~~K~KLE~LCRELQ---kqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~--------- 185 (375)
+++++|.|.. .+-.+|..++.+++ ++...+-++.-+.+.+-.-+|. ..+-|..+|+=...++.-+-
T Consensus 4 ~~~~~~~~ve-~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~-AieAF~E~ik~FeeQ~~~qer~~~~~~~~ 81 (170)
T 3l4q_C 4 DQIVKEDSVE-AVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRT-AIEAFNETIKIFEEQGQTQEKSSKEYLER 81 (170)
T ss_dssp ----CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSSTTGGGSS
T ss_pred hhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555432 34567888888877 4455677887777777677774 45779999987777665321
Q ss_pred ------hhhhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHH-HhHHHHHHHHHHHh
Q 017209 186 ------DDCLSQLKENE-MLRTNLKQLADQYALTEQQYAQK-LKQKTLELQIGELK 233 (375)
Q Consensus 186 ------~~~~k~~eEN~-~LreKLK~LieQYElRE~h~~k~-lK~KeLE~QL~~AK 233 (375)
........+|. .|..+|+.|-+.-+.-++.+... ...++||-+++..|
T Consensus 82 f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLK 137 (170)
T 3l4q_C 82 FRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLK 137 (170)
T ss_dssp SSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11222234444 79999999887766544443331 22344555444443
No 63
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=23.96 E-value=4.5e+02 Score=24.57 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 290 FETFKQEIEKMAKSIKELKKENAFLKSKC-EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 290 F~tFKkEMEKMsKKiKkLEKEn~~~K~K~-E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
|..++.|+.+.+..+.+++|...---... ...+..+..-+.+-+....+++.+.+ .+++++|-.||+
T Consensus 133 ~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~-----~~~r~AL~EERr 200 (253)
T 2d1l_A 133 YKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEK-----QAVRKALIEERG 200 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 66777788777777777775431100001 11222333333444445555555554 367777777775
No 64
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.92 E-value=2e+02 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017209 327 ELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVG 366 (375)
Q Consensus 327 emaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~~~~ 366 (375)
++..+...+..+-..|+.+++.|..-...|..--.+.|++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3333333444444444444444444444444444444444
No 65
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.08 E-value=3.5e+02 Score=23.04 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=44.7
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 017209 129 AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQ 208 (375)
Q Consensus 129 ~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~eEN~~LreKLK~LieQ 208 (375)
.++..|+.|+.+..+..+.|+...+.....-.... ... - .....+.+. .--..|..+|+.++..
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~-----~~~--~--------~s~~~Rir~-~q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEE-----HSN--K--------SSADLRIRK-TQYSTISRKFVEVMSD 141 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccC--C--------CcHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 56788888888888888877776554432211100 000 0 000111111 1234699999999999
Q ss_pred HhhHHHHHHHHHhHH
Q 017209 209 YALTEQQYAQKLKQK 223 (375)
Q Consensus 209 YElRE~h~~k~lK~K 223 (375)
|..-+..|..-.|.+
T Consensus 142 yq~~q~~y~~~~K~~ 156 (180)
T 1s94_A 142 YNTTQIDYRDRCKAR 156 (180)
T ss_dssp HHHHHHSCTTCCCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 998777776655533
No 66
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=23.00 E-value=2.6e+02 Score=21.58 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 017209 298 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL----EKSKNQKEKLESLCRSLQ 357 (375)
Q Consensus 298 EKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~----e~~kkq~ekLE~LCRaLQ 357 (375)
..++.+++.+|-+|..|..+.......|-+--.++..+..++ +.+--||..|--|-+.|.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999999999999998887777666665 445667777776665554
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.80 E-value=3.1e+02 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 017209 297 IEKMAKSIKELKKENAFLKSKCEKSDFTL 325 (375)
Q Consensus 297 MEKMsKKiKkLEKEn~~~K~K~E~sn~aL 325 (375)
.++....+..|+.+...|...+......|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33334444444444444444444433333
No 68
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=22.46 E-value=1.8e+02 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 311 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 311 n~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
...++...+..|..|+++..+|..+-.++..++...
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456889999999999999999999999999888654
No 69
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=22.26 E-value=1.8e+02 Score=22.28 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 281 DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESL 352 (375)
Q Consensus 281 dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~L 352 (375)
..|..+|.-|..+..+-..+.+.|..+|..... .. .|-.|--+|-.++.+|..+-.+-..-.+|
T Consensus 10 ~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~-------~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~~~ 73 (76)
T 1zhc_A 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNAS-------DA-EVSHMKKQKLKLKDEIHSMIIEYREKQKS 73 (76)
T ss_dssp HHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSC-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCC-------hH-HHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 456678889999999999998888888754321 12 66666677777777766655544444443
No 70
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.25 E-value=2.5e+02 Score=22.82 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=34.5
Q ss_pred hhHhhhhHHHHHHHHHHHHH--HHHHhHHHHHHHhHHHHHHHHHHHhhHHHHH
Q 017209 101 KRTFKSEKEFLEFTLKYQQV--LAERDAAMAVRDKLESLCRELQRQNKMLMDE 151 (375)
Q Consensus 101 k~~~klek~~~~~~~~~~qv--~~Er~kai~~K~KLE~LCRELQkqNK~lKEE 151 (375)
+....|.++++++..+...+ |.|-.|..-++-|+.+|-.||++.|+.|...
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555554443333 2355578899999999999999999888765
No 71
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.92 E-value=2.8e+02 Score=21.51 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 292 TFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 292 tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
.|..+++.+...|-.||.+...++.-++.-....-.+..=+..++-+|..+++=+
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455777777777777877777777777777666667777777777777776653
No 72
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.52 E-value=2.1e+02 Score=27.81 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017209 337 KQLEKSKNQKEKLESLC 353 (375)
Q Consensus 337 ke~e~~kkq~ekLE~LC 353 (375)
..|..++.++..|+..|
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444555444
No 73
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=20.96 E-value=3.6e+02 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHH
Q 017209 133 KLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDV 177 (375)
Q Consensus 133 KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dI 177 (375)
|...+-+|.+..-...++--+.=.+-.+.-+++|+++||.++...
T Consensus 32 km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sL 76 (239)
T 3k66_A 32 KVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSL 76 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444333445778899999999999544
No 74
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.84 E-value=3.1e+02 Score=21.54 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 017209 296 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE----KSKNQKEKLESLCRSLQA 358 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e----~~kkq~ekLE~LCRaLQ~ 358 (375)
+-+.++.+++.+|-+|..|..+.......|-+--.++..+..++. .+-.||..|--|=..|..
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999988877777766654 456677777766665543
No 75
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.49 E-value=7.1e+02 Score=25.63 Aligned_cols=93 Identities=10% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHhHHHHHH
Q 017209 258 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK-------KENAFLKSKCEKSDFTLIELVE 330 (375)
Q Consensus 258 l~~tE~eLr~QL~~Y~eKFeEFQdTL~KSNevF~tFKkEMEKMsKKiKkLE-------KEn~~~K~K~E~sn~aLiemae 330 (375)
|.++|...+.-|+.......+|+. .++.+|.-++.=|+.|.+..+... .-+..|.++++-....+..-+.
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~---s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~ 132 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQN---KYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVN 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444443 344444444444444444433221 1122445555544445554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017209 331 ERERMKKQLEKSKNQKEKLESLC 353 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~ekLE~LC 353 (375)
--..|..-|+.+..++.+||.-+
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777888888888654
Done!