Query 017209
Match_columns 375
No_of_seqs 122 out of 155
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017209.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017209hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 55.5 28 0.002 24.0 7.9 27 293-319 2-28 (66)
2 d1seta1 a.2.7.1 (A:1-110) Sery 53.9 38 0.0028 25.2 9.0 44 331-374 65-110 (110)
3 d1ez3a_ a.47.2.1 (A:) Syntaxin 31.1 97 0.0071 23.0 12.3 100 106-221 15-121 (124)
4 d1gs9a_ a.24.1.1 (A:) Apolipop 27.2 1.3E+02 0.0091 23.1 10.1 24 161-184 34-57 (144)
5 d1ybza1 a.130.1.1 (A:2-75) mon 26.0 60 0.0044 22.7 5.5 36 311-346 3-38 (74)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 26.0 24 0.0017 27.1 3.3 25 297-321 4-28 (96)
7 d2ap3a1 a.24.27.1 (A:12-196) H 21.8 1.3E+02 0.0096 21.4 19.5 77 285-361 106-182 (185)
8 d2d8da1 a.130.1.1 (A:3-82) Cho 21.4 88 0.0064 21.7 5.6 35 312-346 4-38 (80)
9 d1ecma_ a.130.1.1 (A:) Chorism 19.6 91 0.0066 22.1 5.5 34 312-345 4-37 (91)
10 d2ap3a1 a.24.27.1 (A:12-196) H 14.3 2E+02 0.015 20.3 16.5 23 296-318 145-167 (185)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=55.52 E-value=28 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017209 293 FKQEIEKMAKSIKELKKENAFLKSKCE 319 (375)
Q Consensus 293 FKkEMEKMsKKiKkLEKEn~~~K~K~E 319 (375)
+-.|+.++.|++.+++++...+..|..
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 357999999999999999999999964
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.94 E-value=38 Score=25.19 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCC
Q 017209 331 ERERMKKQLEKSKNQKEKLESLCRSLQAERKQN--SVGSNNSDSAP 374 (375)
Q Consensus 331 Er~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~~~--~~~~~~~~~~~ 374 (375)
++..+..++..+..++..|+.--..++.+.... .-+++..++||
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~VP 110 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCc
Confidence 344556667777888888888888888886543 22455555555
No 3
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.06 E-value=97 Score=23.04 Aligned_cols=100 Identities=12% Similarity=0.188 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHH-------HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHH
Q 017209 106 SEKEFLEFTLKYQQVLAERDAAM-------AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVS 178 (375)
Q Consensus 106 lek~~~~~~~~~~qv~~Er~kai-------~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq 178 (375)
+...+..+......+..-|.+++ .++..|+.|-.+..+..+.|+...+.+...-+.. .
T Consensus 15 Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~-----~---------- 79 (124)
T d1ez3a_ 15 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-----E---------- 79 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h----------
Confidence 33444445555555555555544 3477777777777777777776655432211000 0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 017209 179 IKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLK 221 (375)
Q Consensus 179 ~~meE~~~~~~k~~eEN~~LreKLK~LieQYElRE~h~~k~lK 221 (375)
..-......+.+ ..--..|..+|+.++..|..-+..|..-.+
T Consensus 80 ~~~~~s~~~Rir-~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k 121 (124)
T d1ez3a_ 80 GLNRSSADLRIR-KTQHSTLSRKFVEVMSEYNATQSDYRERCK 121 (124)
T ss_dssp TTSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000111111 123346999999999999987777765544
No 4
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=27.16 E-value=1.3e+02 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=14.0
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHhh
Q 017209 161 NLRLDLSAKFQDAIKDVSIKLEEQ 184 (375)
Q Consensus 161 ~kRkelsekFq~tL~dIq~~meE~ 184 (375)
+-+++|...++.++..++.++++-
T Consensus 34 el~~el~~~l~e~~~~l~~~~~~l 57 (144)
T d1gs9a_ 34 QVTQELRALMDETMKELKAYKSEL 57 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666544
No 5
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.00 E-value=60 Score=22.70 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 311 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 311 n~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
-..|+.+.+..|..|+++..+|...-.++..++++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~ 38 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356888899999999999999999999988876653
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=25.99 E-value=24 Score=27.08 Aligned_cols=25 Identities=44% Similarity=0.542 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 297 IEKMAKSIKELKKENAFLKSKCEKS 321 (375)
Q Consensus 297 MEKMsKKiKkLEKEn~~~K~K~E~s 321 (375)
||.|.+.+-+|+-||..||++.-.+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~ 28 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSS 28 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999997664
No 7
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.78 E-value=1.3e+02 Score=21.42 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=50.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017209 285 KSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 361 (375)
Q Consensus 285 KSNevF~tFKkEMEKMsKKiKkLEKEn~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLE~LCRaLQ~ER~ 361 (375)
..+.........++.+...+..+......+..........+-.+-.....+...+..+...+..+....+.++.++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~ 182 (185)
T d2ap3a1 106 QLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555566666666666666666666666666666666666666677777777777777777777776654
No 8
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=21.37 E-value=88 Score=21.75 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017209 312 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 346 (375)
Q Consensus 312 ~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 346 (375)
..|+.+.+..|..|+.+..+|..+-.++..++...
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~~ 38 (80)
T d2d8da1 4 QALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 38 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46888999999999999999999999998887754
No 9
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=19.58 E-value=91 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017209 312 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 345 (375)
Q Consensus 312 ~~~K~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 345 (375)
..++.+.+..|..|+.+..+|..+-.++..++..
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (91)
T d1ecma_ 4 LALREKISALDEKLLALLAERRELAVEVGKAKLL 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999888888777654
No 10
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=14.35 E-value=2e+02 Score=20.31 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017209 296 EIEKMAKSIKELKKENAFLKSKC 318 (375)
Q Consensus 296 EMEKMsKKiKkLEKEn~~~K~K~ 318 (375)
.+..+...+..|++....+....
T Consensus 145 ~~~~l~~~~~~l~~~~~~~~~~~ 167 (185)
T d2ap3a1 145 TQQGVNEKSKAIEQNYKKLKEVS 167 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
Done!