Query 017210
Match_columns 375
No_of_seqs 338 out of 1296
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 1.2E-40 4.1E-45 324.9 24.9 196 94-289 16-220 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 5.2E-39 1.8E-43 292.9 22.7 192 95-287 8-204 (204)
3 2xri_A ERI1 exoribonuclease 3; 100.0 5.7E-38 2E-42 292.0 23.6 188 94-285 28-221 (224)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 1.1E-37 3.8E-42 302.4 25.5 238 48-289 30-274 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 9.4E-38 3.2E-42 309.4 22.6 238 48-289 80-324 (349)
6 2gui_A DNA polymerase III epsi 100.0 2.4E-34 8.3E-39 260.6 19.7 172 97-279 9-186 (194)
7 2p1j_A POLIII, DNA polymerase 100.0 2.7E-34 9.3E-39 259.6 19.5 169 97-282 12-180 (186)
8 3mxm_B Three prime repair exon 100.0 1.7E-33 5.8E-38 265.5 14.8 173 96-278 11-215 (242)
9 2f96_A Ribonuclease T; RNAse, 100.0 6.7E-32 2.3E-36 250.5 17.8 178 97-280 29-215 (224)
10 3u3y_B Three prime repair exon 100.0 7.1E-32 2.4E-36 263.5 15.6 173 96-278 11-215 (314)
11 1y97_A Three prime repair exon 100.0 3.8E-31 1.3E-35 246.9 18.3 176 95-280 8-212 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 8.6E-31 2.9E-35 244.5 18.7 181 97-283 37-226 (235)
13 2igi_A Oligoribonuclease; RNAs 100.0 7.3E-29 2.5E-33 222.1 12.8 165 97-279 5-178 (180)
14 1wlj_A Interferon stimulated g 100.0 9.9E-29 3.4E-33 223.9 10.9 158 97-280 5-171 (189)
15 2gbz_A Oligoribonuclease; ORN, 99.9 7.8E-28 2.7E-32 219.0 12.4 163 97-279 9-182 (194)
16 2qxf_A Exodeoxyribonuclease I; 99.9 2E-27 7E-32 244.2 16.7 170 97-278 9-201 (482)
17 3tr8_A Oligoribonuclease; tran 99.9 4.8E-27 1.6E-31 213.7 11.8 165 97-279 9-182 (186)
18 4hec_A Putative uncharacterize 98.9 4.7E-09 1.6E-13 95.4 10.6 154 97-276 22-180 (190)
19 2kfn_A Klenow fragment of DNA 98.8 4.1E-08 1.4E-12 103.4 16.3 146 98-280 27-195 (605)
20 4gmj_B CCR4-NOT transcription 98.7 2.7E-07 9.3E-12 88.7 17.1 172 98-280 35-247 (285)
21 1x9m_A DNA polymerase; DNA plo 98.5 2.3E-07 7.8E-12 99.3 11.0 142 99-282 1-187 (698)
22 2d5r_A CCR4-NOT transcription 98.5 6.4E-06 2.2E-10 77.9 19.3 174 97-280 24-237 (252)
23 1uoc_A POP2; hydrolase, DEDD n 98.4 8E-06 2.7E-10 78.6 17.1 173 97-278 38-265 (289)
24 2p51_A SPCC18.06C protein; DED 98.4 7.6E-06 2.6E-10 80.0 16.6 172 97-278 45-256 (333)
25 1qht_A Protein (DNA polymerase 98.2 2.3E-05 7.8E-10 84.8 17.2 152 97-275 135-327 (775)
26 3iay_A DNA polymerase delta ca 97.7 0.00071 2.4E-08 74.5 17.6 159 98-274 250-465 (919)
27 1noy_A Protein (DNA polymerase 97.7 0.0011 3.6E-08 66.0 16.1 165 98-274 107-335 (388)
28 1s5j_A DNA polymerase I; repli 97.6 0.00029 1E-08 76.8 11.8 156 98-271 191-386 (847)
29 2gv9_A DNA polymerase; polymer 97.5 0.0015 5.2E-08 73.6 16.8 170 98-274 321-550 (1193)
30 3d45_A Poly(A)-specific ribonu 97.5 0.0015 5.2E-08 67.3 14.9 86 190-279 276-393 (507)
31 4dfk_A DNA polymerase I, therm 96.7 0.0059 2E-07 63.4 10.2 118 98-278 11-128 (540)
32 3f2b_A DNA-directed DNA polyme 96.5 0.00082 2.8E-08 74.5 2.0 42 44-85 129-185 (1041)
33 3qex_A DNA polymerase, GP43; d 95.9 0.15 5.1E-06 56.0 16.3 164 98-273 109-337 (903)
34 3k59_A POL II, DNA polymerase 95.8 0.15 5.2E-06 55.2 15.7 149 98-274 154-349 (786)
35 2hnh_A DNA polymerase III alph 95.6 0.003 1E-07 69.4 1.5 41 44-84 19-74 (910)
36 3saf_A Exosome component 10; e 94.5 0.53 1.8E-05 47.4 14.0 92 176-280 172-279 (428)
37 2hpi_A DNA polymerase III alph 94.4 0.011 3.7E-07 66.7 1.3 42 44-85 20-78 (1220)
38 3pv8_A DNA polymerase I; DNA p 94.3 0.057 2E-06 56.6 6.7 134 97-279 29-182 (592)
39 2py5_A DNA polymerase; protein 93.7 0.15 5.1E-06 53.2 8.4 129 97-277 6-183 (575)
40 2a1r_A Poly(A)-specific ribonu 93.3 0.34 1.2E-05 48.8 10.0 104 163-278 262-397 (430)
41 3o0f_A Putative metal-dependen 93.0 0.033 1.1E-06 53.7 1.9 29 44-72 25-53 (301)
42 2yb1_A Amidohydrolase; HET: AM 91.8 0.068 2.3E-06 50.7 2.5 29 44-72 14-42 (292)
43 1vk0_A Hypothetical protein; h 90.6 0.6 2.1E-05 42.2 7.3 90 175-276 97-205 (206)
44 2e6m_A Werner syndrome ATP-dep 89.4 1.2 4E-05 39.5 8.2 100 176-290 86-204 (208)
45 1yt3_A Ribonuclease D, RNAse D 88.2 2.1 7E-05 41.8 9.7 92 176-280 64-172 (375)
46 3e38_A Two-domain protein cont 86.6 0.22 7.6E-06 48.7 1.6 29 44-72 31-59 (343)
47 2hbj_A Exosome complex exonucl 84.8 2.8 9.4E-05 41.7 8.7 93 176-281 149-257 (410)
48 3cym_A Uncharacterized protein 74.8 11 0.00038 37.7 9.3 89 175-279 84-188 (440)
49 2yxo_A Histidinol phosphatase; 74.8 1.3 4.4E-05 40.3 2.2 29 45-73 14-42 (267)
50 2w9m_A Polymerase X; SAXS, DNA 73.6 1.4 4.9E-05 45.7 2.5 28 45-72 340-367 (578)
51 1m65_A Hypothetical protein YC 69.7 1.6 5.5E-05 39.1 1.6 27 45-71 16-42 (245)
52 3b0x_A DNA polymerase beta fam 63.4 2.9 9.8E-05 43.3 2.2 29 45-73 350-378 (575)
53 1hy9_A Cocaine and amphetamine 62.7 3.1 0.00011 27.9 1.5 36 324-369 2-37 (41)
54 2anu_A Hypothetical protein TM 61.4 3.1 0.00011 38.0 1.8 27 44-70 32-58 (255)
55 2a1r_A Poly(A)-specific ribonu 29.4 98 0.0033 30.7 6.9 49 97-145 22-95 (430)
56 3dcp_A Histidinol-phosphatase; 29.1 19 0.00065 33.6 1.5 26 47-72 18-43 (283)
57 2gai_A DNA topoisomerase I; zi 28.2 12 0.0004 39.4 -0.2 23 346-373 589-611 (633)
58 1v77_A PH1877P, hypothetical p 24.8 23 0.00078 31.5 1.1 25 45-71 13-37 (212)
59 3q7c_A Nucleoprotein; deddh ex 24.2 1E+02 0.0034 28.1 5.2 100 99-227 59-158 (243)
60 3qy7_A Tyrosine-protein phosph 22.6 41 0.0014 31.0 2.4 27 45-71 15-44 (262)
61 1bgx_T TAQ DNA polymerase; DNA 21.2 1.9E+02 0.0064 31.3 7.6 82 176-279 340-421 (832)
62 1nwz_A PYP, photoactive yellow 20.3 32 0.0011 28.4 1.1 38 120-171 26-63 (125)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=1.2e-40 Score=324.91 Aligned_cols=196 Identities=29% Similarity=0.475 Sum_probs=173.0
Q ss_pred CCcccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEee--EEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCH
Q 017210 94 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA--CFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 171 (375)
Q Consensus 94 ~~~~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d--~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~ 171 (375)
+.+++|||||+||||++.......+|||||||++|.++|++++ +|++||||...+.|+++++++||||++||++||+|
T Consensus 16 ~~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~ 95 (308)
T 3cg7_A 16 CPFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTF 95 (308)
T ss_dssp CCCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBH
T ss_pred CCCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCH
Confidence 3557899999999998531112249999999999977899988 99999999964459999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-C------CCCHHH
Q 017210 172 SEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG-V------RCNLKE 244 (375)
Q Consensus 172 ~evl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~-~------~~~L~~ 244 (375)
++|+++|.+|+++..+++||+++++||.||++.||+++|+++|++.|.++++|+||+.+++.+++. . +++|.+
T Consensus 96 ~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~ 175 (308)
T 3cg7_A 96 DVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHH
T ss_pred HHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHH
Confidence 999999999999999999999999999999646999999999999876567899999999877642 1 578999
Q ss_pred HHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcccccccccccc
Q 017210 245 AVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW 289 (375)
Q Consensus 245 l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~~~i~~~l~~ 289 (375)
+++++||+.++++|||++||++||+||.+|++++...++++++..
T Consensus 176 l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~ 220 (308)
T 3cg7_A 176 MNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTC 220 (308)
T ss_dssp HHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEES
T ss_pred HHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhh
Confidence 999999999877899999999999999999999999999988764
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=5.2e-39 Score=292.91 Aligned_cols=192 Identities=36% Similarity=0.736 Sum_probs=168.2
Q ss_pred CcccEEEEEEeeCCCCCCC-CCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHH
Q 017210 95 EFQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 173 (375)
Q Consensus 95 ~~~~fVVfDlETTGl~g~~-~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~e 173 (375)
..+.|||||+||||++... +..++|||||||+++.++|+++++|++||+|..++.|+++++++||||++||+++|+|++
T Consensus 8 ~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~ 87 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 87 (204)
T ss_dssp SSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence 4578999999999985311 357899999999998668999999999999986556999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC-CCccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC--CCCCHHHHHHHc
Q 017210 174 ALLRHDKWLENKGI-KNTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGG--VRCNLKEAVEMA 249 (375)
Q Consensus 174 vl~~f~~fl~~~~l-v~~n~~vv~~a~FD~~~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~--~~~~L~~l~~~l 249 (375)
|+++|.+|+++..+ ....++|+||+.||+ . ||+++|+++|++.|.+...|+|++.+++.+++. .+++|++++++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~-~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTT-HHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchH-HHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHc
Confidence 99999999998752 234467899999996 6 999999999998875545899999999988764 358999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHhcccccccccc
Q 017210 250 GLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 287 (375)
Q Consensus 250 gI~~~g~~HrALdDA~atA~L~~~ll~~~~~~~i~~~l 287 (375)
|++.++++|||++||++||+||.+|++++..+.|++++
T Consensus 167 gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 167 GMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred CCCCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 99988778999999999999999999999999998864
No 3
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.7e-38 Score=292.02 Aligned_cols=188 Identities=39% Similarity=0.719 Sum_probs=162.9
Q ss_pred CCcccEEEEEEeeCCCCCCCCCC--CcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCH
Q 017210 94 QEFQYFVVIDFEATCDKDKNPYP--QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 171 (375)
Q Consensus 94 ~~~~~fVVfDlETTGl~g~~~~~--~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~ 171 (375)
+.+..|||||+||||++ +.. ++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++||+|
T Consensus 28 ~~~~~~vviD~ETTGl~---~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~ 104 (224)
T 2xri_A 28 QRYHYFLVLDFEATCDK---PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSL 104 (224)
T ss_dssp CSCSEEEEECCEECCCC----CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCH
T ss_pred CCCCeEEEEEEEcCCCC---CCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCH
Confidence 34468999999999984 333 5999999999985557999999999999865569999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCccE--EEEEcCcchHHHH-HHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHH
Q 017210 172 SEALLRHDKWLENKGIKNTNF--AVVTWSNWDCRVM-LESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVE 247 (375)
Q Consensus 172 ~evl~~f~~fl~~~~lv~~n~--~vv~~a~FD~~~f-L~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~-~~~~L~~l~~ 247 (375)
++|+++|.+|+++..+++||. ++++||.||+ .| |+++|+++|++.|.++..|+|++..++...+. .+++|.++++
T Consensus 105 ~~v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~ 183 (224)
T 2xri_A 105 QQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK 183 (224)
T ss_dssp HHHHHHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHH
Confidence 999999999999999999864 8899999997 76 88999999999875556899976655543332 3589999999
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcccccccc
Q 017210 248 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITN 285 (375)
Q Consensus 248 ~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~~~i~~ 285 (375)
++|++.++++|||++||++||+||.+|++++..++||.
T Consensus 184 ~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 184 GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HcCCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 99999877789999999999999999999999888875
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=302.36 Aligned_cols=238 Identities=29% Similarity=0.540 Sum_probs=187.8
Q ss_pred CchhHhHHHhhcCCcceeeCcC--CCCCCccccccccccccCCCCCCCCCcccEEEEEEeeCCCCCC-CCCCCcEEEEce
Q 017210 48 PGGDAGESIHQLSSEFVEYSNE--FYNNPTYQHDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDK-NPYPQEIIEFPS 124 (375)
Q Consensus 48 ~~~~~v~~a~~~g~~aiaitd~--~~~kpiyg~e~~~~~~~~~~~~~~~~~~~fVVfDlETTGl~g~-~~~~~eIIEIGA 124 (375)
+.+++.+.++..|-+.-+..+. ..+|..|..+........ ...+..+.|||||+||||++.. ++..++||||||
T Consensus 30 ~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~vviD~ETTGl~~~~~~~~~~IIeIga 106 (299)
T 1zbh_A 30 SKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESN---FADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPV 106 (299)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHHHHHHHHHH---HHCCSCSEEEEECCEECCCTTCCTTCCCCEEEEEE
T ss_pred cHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhhhhccccc---ccCCCCceEEEEEeecccCCCCCCCCCCceEEEEE
Confidence 4456778877777654433221 113344543322211111 1112346899999999998532 256799999999
Q ss_pred EEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHHHHHHHhhCCCC-CccEEEEEcCcchHH
Q 017210 125 VIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIK-NTNFAVVTWSNWDCR 203 (375)
Q Consensus 125 V~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~f~~fl~~~~lv-~~n~~vv~~a~FD~~ 203 (375)
|+++..+|+++++|++||+|..++.|+++++++||||++||++||+|++|+++|.+|+++..+. ...++|+||+.||+
T Consensus 107 V~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~- 185 (299)
T 1zbh_A 107 VLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDM- 185 (299)
T ss_dssp EEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHH-
T ss_pred EEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHH-
Confidence 9998657899999999999986556999999999999999999999999999999999986321 12468999999996
Q ss_pred H-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 204 V-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 204 ~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~--~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
. ||+.+|+++|++.|.+..+|+|++.+++.+++..+ ++|++++++|||+.++++|||++||++||+||.+|++++..
T Consensus 186 ~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 186 SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Confidence 8 99999999999887555689999999988876544 89999999999998877899999999999999999999998
Q ss_pred ccccccccc
Q 017210 281 FSITNSLMW 289 (375)
Q Consensus 281 ~~i~~~l~~ 289 (375)
+.+++.+..
T Consensus 266 ~~~~~l~~~ 274 (299)
T 1zbh_A 266 LRINEKMHA 274 (299)
T ss_dssp CCCCEEEET
T ss_pred CChhhhhhc
Confidence 888887664
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=309.43 Aligned_cols=238 Identities=30% Similarity=0.554 Sum_probs=170.0
Q ss_pred CchhHhHHHhhcCCcceeeCcC--CCCCCccccccccccccCCCCCCCCCcccEEEEEEeeCCCCCC-CCCCCcEEEEce
Q 017210 48 PGGDAGESIHQLSSEFVEYSNE--FYNNPTYQHDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDK-NPYPQEIIEFPS 124 (375)
Q Consensus 48 ~~~~~v~~a~~~g~~aiaitd~--~~~kpiyg~e~~~~~~~~~~~~~~~~~~~fVVfDlETTGl~g~-~~~~~eIIEIGA 124 (375)
+.+++.+.++..|.++-+..+. ..+|..|..+...... .....+.++.|||||+||||++.. ++..++||||||
T Consensus 80 ~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~~~~~~~---~~~~~~~~~~~vviD~ETTGl~~~~~~~~deIIEIga 156 (349)
T 1zbu_A 80 SKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKE---SNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPV 156 (349)
T ss_dssp ------------------------------------------------CCCSEEEECCCEECCCTTCCTTCCCCEEECCE
T ss_pred CHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhcccccCc---CccccccCCeEEEEEEecCCCCCcCCCCCCeEEEEEE
Confidence 4556666777776665544432 2234444433222111 122223457899999999998531 356799999999
Q ss_pred EEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHHHHHHHhhCCCC-CccEEEEEcCcchHH
Q 017210 125 VIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIK-NTNFAVVTWSNWDCR 203 (375)
Q Consensus 125 V~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~f~~fl~~~~lv-~~n~~vv~~a~FD~~ 203 (375)
|+++..+|+++++|++||+|..++.|+++++++||||++||++||+|++|+.+|.+|+++..+. ...++|+||+.||+
T Consensus 157 V~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~- 235 (349)
T 1zbu_A 157 VLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDM- 235 (349)
T ss_dssp EEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHH-
T ss_pred EEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhH-
Confidence 9998657899999999999986556999999999999999999999999999999999985321 12478999999996
Q ss_pred H-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 204 V-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 204 ~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~--~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
. ||+.+|+++|+..|.+..+|+|++.+++.+++..+ ++|++++++|||+.++++|||++||++||+||.+|++++..
T Consensus 236 ~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~~ 315 (349)
T 1zbu_A 236 SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCE 315 (349)
T ss_dssp HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8 99999999999887555689999999988876554 89999999999998877899999999999999999999998
Q ss_pred ccccccccc
Q 017210 281 FSITNSLMW 289 (375)
Q Consensus 281 ~~i~~~l~~ 289 (375)
+.+++.+..
T Consensus 316 ~~i~ell~~ 324 (349)
T 1zbu_A 316 LRINEKMHA 324 (349)
T ss_dssp CCCCEEEET
T ss_pred CCHHHHHhh
Confidence 888887664
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=2.4e-34 Score=260.64 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=147.2
Q ss_pred ccEEEEEEeeCCCCCCCC--CCCcEEEEceEEEEcCCCeEe-eEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHH
Q 017210 97 QYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLE-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 173 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~--~~~eIIEIGAV~vd~~~g~i~-d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~e 173 (375)
..|||||+||||++...+ ..++|||||||+++ +|+++ ++|++||+|.. .|+++++++||||++||+++|++++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 469999999999742111 45899999999996 67876 47999999986 5999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC--CceeehHHHHHHhcCCCCCCHHHHHHHcCC
Q 017210 174 ALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF--NRWINLKVPFHEVFGGVRCNLKEAVEMAGL 251 (375)
Q Consensus 174 vl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI 251 (375)
|+++|.+|+++. .+|+||+.||+ .||+++|+++|++.|.+. ..++|+..+++.+++..+++|++++++||+
T Consensus 85 v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi 157 (194)
T 2gui_A 85 VADEFMDYIRGA------ELVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEI 157 (194)
T ss_dssp HHHHHHHHHTTS------EEEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTC
T ss_pred HHHHHHHHHCCC------eEEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCc
Confidence 999999999875 45778899996 899999999999876443 589999999988886667899999999999
Q ss_pred CCCC-CCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 252 AWQG-RAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 252 ~~~g-~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
+..+ .+|||++||++|++||.+|+++..
T Consensus 158 ~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 158 DNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 9876 389999999999999999876543
No 7
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.7e-34 Score=259.65 Aligned_cols=169 Identities=27% Similarity=0.301 Sum_probs=148.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 176 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~ 176 (375)
..||+||+||||+ ++..++|||||||+++ +|+++++|++||+|.. .|+++++++||||++||+++|++++|++
T Consensus 12 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~ 84 (186)
T 2p1j_A 12 ATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLP 84 (186)
T ss_dssp -CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHH
Confidence 4799999999997 4567899999999996 7899999999999986 5999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCC
Q 017210 177 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 256 (375)
Q Consensus 177 ~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~ 256 (375)
+|.+|+++. ++|+||+.||+ .||+++++++|++.|. ..++|+..+++.+++.++++|++++++||++.. .
T Consensus 85 ~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~-~ 154 (186)
T 2p1j_A 85 EFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPF-R 154 (186)
T ss_dssp HHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCST-T
T ss_pred HHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCC-C
Confidence 999999874 46777899996 8999999999987653 479999999988776678999999999999986 4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccccc
Q 017210 257 AHCGLDDAKNTARLLALLMHRGFKFS 282 (375)
Q Consensus 257 ~HrALdDA~atA~L~~~ll~~~~~~~ 282 (375)
+|||++||++|++||.+|++++.+.+
T Consensus 155 ~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999988776544
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=1.7e-33 Score=265.46 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=143.9
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCC------------------eEeeEEEEeecCCCCCCCCcchHhh
Q 017210 96 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG------------------QLEACFQTYVRPTCNQLLSDFCKDL 157 (375)
Q Consensus 96 ~~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g------------------~i~d~F~~lVkP~~~p~Is~~~~~L 157 (375)
..+|||||+||||+ ++..++|||||||+++. ++ +++++|+++|+|.. .|+++++++
T Consensus 11 ~~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i 84 (242)
T 3mxm_B 11 MQTLIFLDLEATGL---PSSRPEVTELCLLAVHR-RALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEI 84 (242)
T ss_dssp CSEEEEEEEEESSC---GGGCCCEEEEEEEEEEH-HHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHH
T ss_pred cceEEEEEeecCCC---CCCCCeeEEEEEEEecC-CcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHh
Confidence 46799999999997 45679999999999972 21 68899999999986 599999999
Q ss_pred hCCChHHHhCC--CCHH-HHHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHH
Q 017210 158 TGIQQIQVDRG--VTLS-EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHE 233 (375)
Q Consensus 158 TGIt~e~l~~a--p~~~-evl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~ 233 (375)
||||++||.++ |+|+ +|+++|.+|+++.. ...++|+||+ .||+ .||+++|+++|++.+.....++|+..+++.
T Consensus 85 ~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~ 161 (242)
T 3mxm_B 85 TGLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKA 161 (242)
T ss_dssp HCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHH
T ss_pred cCCCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHH
Confidence 99999999988 9996 99999999999821 1124678887 9996 999999999998864222378999888876
Q ss_pred hc---------CCCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 234 VF---------GGVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 234 ~~---------~~~~~~L~~l~~~-lgI~~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
++ +.++++|++++++ ||++.. ++|||++||++||+||.++.++.
T Consensus 162 l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 162 LEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred HHhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 54 1468999999976 999986 58999999999999999877653
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.98 E-value=6.7e-32 Score=250.47 Aligned_cols=178 Identities=20% Similarity=0.183 Sum_probs=146.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEc-CCCeE--eeEEEEeecCCCCCCCCcchHhhhCCChH-HHhCCCCHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQL--EACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 172 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~-~~g~i--~d~F~~lVkP~~~p~Is~~~~~LTGIt~e-~l~~ap~~~ 172 (375)
..|||||+||||+ ++..++|||||||+++. .+|++ +++|++||+|.....|+++++++||||++ ||++++++.
T Consensus 29 ~~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~ 105 (224)
T 2f96_A 29 YLPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE 105 (224)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred CcEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 3699999999997 45678999999999963 26774 78999999995323699999999999997 589999999
Q ss_pred HHHHHHHHHHhhCC---CCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 017210 173 EALLRHDKWLENKG---IKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 248 (375)
Q Consensus 173 evl~~f~~fl~~~~---lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~-~~~~iDt~~l~~~~~~~~~~~L~~l~~~ 248 (375)
+|+++|.+|+.... ..+..++|+||+.||+ .||+++|+++|+..+++ ...++||+.+++.+++ +++|..++++
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999997310 0012346677899996 89999999999874333 2479999999988875 4799999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 249 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 249 lgI~~~g-~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
+|++.++ .+|||++||++|++||.+|+++..+
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999754 6899999999999999999877543
No 10
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=7.1e-32 Score=263.46 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=143.6
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCC------------------eEeeEEEEeecCCCCCCCCcchHhh
Q 017210 96 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG------------------QLEACFQTYVRPTCNQLLSDFCKDL 157 (375)
Q Consensus 96 ~~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g------------------~i~d~F~~lVkP~~~p~Is~~~~~L 157 (375)
..+|||||+||||+ ++..++|||||||+++. ++ +++++|+++|||.. .|+++++++
T Consensus 11 ~~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~-~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~I 84 (314)
T 3u3y_B 11 MQTLIFLDLEATGL---PSSRPEVTELCLLAVHR-RALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEI 84 (314)
T ss_dssp CSEEEEEEEEESSC---GGGCCCEEEEEEEEEEH-HHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHH
T ss_pred cCCEEEEEEECCCC---CCCCCeEEEEEEEEEEC-CccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHh
Confidence 45799999999997 45679999999999973 21 46799999999986 599999999
Q ss_pred hCCChHHHhCC--CCH-HHHHHHHHHHHhhCCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHH
Q 017210 158 TGIQQIQVDRG--VTL-SEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHE 233 (375)
Q Consensus 158 TGIt~e~l~~a--p~~-~evl~~f~~fl~~~~lv~~n~~vv~~-a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~ 233 (375)
||||++||+++ |+| +||+++|.+|+++.. ...++|+|| +.||+ .||+++++++|++++.....++|+..+++.
T Consensus 85 hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~ 161 (314)
T 3u3y_B 85 TGLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKA 161 (314)
T ss_dssp HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHH
T ss_pred cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHH
Confidence 99999999998 899 799999999999821 113567889 79996 999999999999875333468999876653
Q ss_pred h----cC-----CCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 234 V----FG-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 234 ~----~~-----~~~~~L~~l~~~-lgI~~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
+ ++ .++++|++++++ ||++.. ++|||++||++|++||+++.++.
T Consensus 162 L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 162 LEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp HHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 22 268999999999 999986 68999999999999999877654
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=3.8e-31 Score=246.87 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=143.3
Q ss_pred CcccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcC--------------CCeEeeEEEEeecCCCCCCCCcchHhhhCC
Q 017210 95 EFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV--------------TGQLEACFQTYVRPTCNQLLSDFCKDLTGI 160 (375)
Q Consensus 95 ~~~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~--------------~g~i~d~F~~lVkP~~~p~Is~~~~~LTGI 160 (375)
....|||||+||||+ ++..++|||||||+++.. .++++++|++||+|.. .|+++++++|||
T Consensus 8 ~~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GI 82 (238)
T 1y97_A 8 RAETFVFLDLEATGL---PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGL 82 (238)
T ss_dssp CCSEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCC
T ss_pred ccCeEEEEEeeCCCc---CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCC
Confidence 346799999999997 356799999999999732 1478899999999986 599999999999
Q ss_pred ChHHH--hCCCCH-HHHHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc-
Q 017210 161 QQIQV--DRGVTL-SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF- 235 (375)
Q Consensus 161 t~e~l--~~ap~~-~evl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~- 235 (375)
|++|| .++|+| ++|+++|.+|+++.. +..++|+||+ .||+ .||+++|+++|+.+|. ...++||..+++.++
T Consensus 83 t~~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~ 158 (238)
T 1y97_A 83 SSEGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLPR-DTVCLDTLPALRGLDR 158 (238)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHH
T ss_pred CHHHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHh
Confidence 99999 578999 599999999998631 1245677788 9996 8999999999988752 247999998888776
Q ss_pred ---------CCCCCCHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 236 ---------GGVRCNLKEAVE-MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 236 ---------~~~~~~L~~l~~-~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
+.++++|+++++ +||++.. .+|||++||++|++||.+|+++...
T Consensus 159 ~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 159 AHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 236899999999 5999875 6899999999999999999876543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=8.6e-31 Score=244.45 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=149.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEc-CCCe--EeeEEEEeecCCCCCCCCcchHhhhCCChH-HHhCCCCHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 172 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~-~~g~--i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e-~l~~ap~~~ 172 (375)
..||+||+||||+ ++..++|||||||+++. .+|+ +.++|++||+|.....|+++++++||||++ ||+++++++
T Consensus 37 ~~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~ 113 (235)
T 3v9w_A 37 FYPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY 113 (235)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred CcEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 4699999999997 46789999999999852 2677 479999999995334699999999999999 999999999
Q ss_pred HHHHHHHHHHhhCCC---CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC-CceeehHHHHHHhcCCCCCCHHHHHHH
Q 017210 173 EALLRHDKWLENKGI---KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF-NRWINLKVPFHEVFGGVRCNLKEAVEM 248 (375)
Q Consensus 173 evl~~f~~fl~~~~l---v~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~-~~~iDt~~l~~~~~~~~~~~L~~l~~~ 248 (375)
+|+++|.+|+++..- .+...+|+||+.||+ .||+.+++++|++.+++. ..++||+.+++.+++ .++|++++++
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHHHH
Confidence 999999999974100 012346677899997 999999999999753332 468999999988876 4799999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHhcccccc
Q 017210 249 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFKFSI 283 (375)
Q Consensus 249 lgI~~~g-~~HrALdDA~atA~L~~~ll~~~~~~~i 283 (375)
||++.++ .+|+|++||.+|++||.+|+++..+.+.
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~~~~ 226 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGG 226 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999864 6899999999999999999988765444
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.96 E-value=7.3e-29 Score=222.07 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=124.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeE-EEEeecCCCC--CCCCcch---HhhhCCChHHHhCCCC
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCN--QLLSDFC---KDLTGIQQIQVDRGVT 170 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~-F~~lVkP~~~--p~Is~~~---~~LTGIt~e~l~~ap~ 170 (375)
..||+||+||||+ ++..++|||||||+++ .+++++++ |++||+|... +.+++++ .++||||++||+++|+
T Consensus 5 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~-~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 5 NNLIWIDLEMTGL---DPERDRIIEIATLVTD-ANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp GCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred CcEEEEEeeCCCC---CCCCCceEEEEEEEEc-CCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 5799999999997 4667999999999997 36666654 9999999851 1245556 4569999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hH-HHHHHhcCCCCCCHHHHHH
Q 017210 171 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LK-VPFHEVFGGVRCNLKEAVE 247 (375)
Q Consensus 171 ~~evl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iD--t~-~l~~~~~~~~~~~L~~l~~ 247 (375)
+++|+++|.+|+++..-.+...+|+||+.||+ .||++++.+.+..+ ..+++| +. .+.+.+++. +.
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~-~fL~~~~~~~~~~~---~~~~~d~~tl~~l~~~~~p~----~~---- 148 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSIGQDR-RFLFKYMPELEAYF---HYRYLDVSTLKELARRWKPE----IL---- 148 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSHHHHH-HHHHHHCHHHHHHS---CSCEEETHHHHHHHHHHCGG----GG----
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHHH-HHHHHHHHHhccCC---CcceeeHHHHHHHHHHhChH----hh----
Confidence 99999999999997311111245666789996 89999998876332 357899 55 355555431 11
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 248 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 248 ~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
.|++.. .+|||++||++||+||.++++...
T Consensus 149 -~~i~~~-~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 149 -DGFTKQ-GTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp -GGSCCC-CCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred -hCCCCc-CCcCcHHHHHHHHHHHHHHHHHhh
Confidence 367654 689999999999999999987643
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=9.9e-29 Score=223.86 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=126.4
Q ss_pred ccEEEEEEeeCCCCCCCCCC-CcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYP-QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 175 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~-~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl 175 (375)
..|||||+||||++ +.. .+|||||+|.. +|+++ |++||+|.. +|+++++++||||++||+++|+|++|+
T Consensus 5 ~~~vviD~ETTGl~---~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGLG---PHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEET---TTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCcC---CCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 46999999999973 443 58899999753 67776 999999986 599999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHH--H--hcC-CCCCCHHHHHHH-c
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFH--E--VFG-GVRCNLKEAVEM-A 249 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~--~--~~~-~~~~~L~~l~~~-l 249 (375)
++|.+|+++. ++|+||+.||+ .||+.+ .|. ..++||..++. . .++ ..+++|++++++ |
T Consensus 75 ~~~~~~l~~~------~lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGK------LVVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTS------EEEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCC------EEEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 9999999874 46677889996 888643 332 36899976532 2 232 358999999998 8
Q ss_pred CCCCCCC--CCcHHHHHHHHHHHHHHHHHhccc
Q 017210 250 GLAWQGR--AHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 250 gI~~~g~--~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
|++..+. +|||++||++|++||.+++++...
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~~ 171 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9998643 899999999999999999876543
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.8e-28 Score=219.00 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=123.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCC-eEeeEEEEeecCCCCCCC----CcchHhh---hCCChHHHhCC
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG-QLEACFQTYVRPTCNQLL----SDFCKDL---TGIQQIQVDRG 168 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g-~i~d~F~~lVkP~~~p~I----s~~~~~L---TGIt~e~l~~a 168 (375)
..|||||+||||+ ++..++|||||||+.++ ++ .+.++|+++|+|.. .+ ++++.++ ||||++||+++
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~--~i~~~~~~~~~~~~~itGIt~~~l~~~ 82 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL--ETLEAMDEWNRNQHRRSGLWQRVLDSQ 82 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH--HHHHTSCSHHHHHHHHHTHHHHHHHCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH--HHhhccchHHHHHHHhhCCCHHHHhcC
Confidence 4799999999997 46789999999999763 34 34568999999985 24 5555555 99999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHH---HHHhcCCCCCCHHHH
Q 017210 169 VTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVP---FHEVFGGVRCNLKEA 245 (375)
Q Consensus 169 p~~~evl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l---~~~~~~~~~~~L~~l 245 (375)
|++++|+++|.+|+++..-.+...+|+||+.||+ .||++++.+.+.. +..+++|+..+ .+.+++. +
T Consensus 83 p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~-~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~ 151 (194)
T 2gbz_A 83 VTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDR-RFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------V 151 (194)
T ss_dssp CCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------G
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhH-HHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------H
Confidence 9999999999999998642222235677889996 9999999887632 23468897643 2332221 2
Q ss_pred HHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 246 VEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 246 ~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
++ +++.. .+|||++||++|+++|..+.+...
T Consensus 152 ~~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 152 AS--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp GT--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred Hh--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 22 35543 589999999999999999887654
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.95 E-value=2e-27 Score=244.16 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=137.6
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeE-EEEeecCCCCCCC--CcchHhhhCCChHHHhCCC-CHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCNQLL--SDFCKDLTGIQQIQVDRGV-TLS 172 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~-F~~lVkP~~~p~I--s~~~~~LTGIt~e~l~~ap-~~~ 172 (375)
..|||||+||||+ ++..++|||||||+++ .+|+++++ |++||+|.. + + ++.++++||||++||.+++ .+.
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~-~-ilp~p~a~~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD-D-YLPQPGAVLITGITPQEARAKGENEA 82 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT-T-CCCCHHHHHHHCCCHHHHHHHCBCHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC-C-CCCCHHHHHHhCCCHHHHhcCCCCHH
Confidence 4799999999997 4667999999999997 47888887 999999986 3 5 6888999999999999755 459
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCC--C--CCceeehHHHHHHhc------------
Q 017210 173 EALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP--Y--FNRWINLKVPFHEVF------------ 235 (375)
Q Consensus 173 evl~~f~~fl~~~~lv~~n~~vv~~-a~FD~~~fL~~~~~~~gi~~P~--~--~~~~iDt~~l~~~~~------------ 235 (375)
+|+.+|.+|++.. ..++|+|| +.||+ .||+.+|.++|++... + .+.++||..+++..+
T Consensus 83 evl~~f~~~l~~~----~~~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~ 157 (482)
T 2qxf_A 83 AFAARIHSLFTVP----KTCILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 (482)
T ss_dssp HHHHHHHHHHTST----TEEEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBC
T ss_pred HHHHHHHHHHcCC----CCEEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCccc
Confidence 9999999999821 12456677 69996 8999999999886321 1 156889988887654
Q ss_pred --CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 236 --GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 236 --~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
+..+++|+++++++||+.. .+|||++||++|++||.+|.++.
T Consensus 158 ~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 158 DDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 3347899999999999975 68999999999999999987654
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.94 E-value=4.8e-27 Score=213.72 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=123.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEE-EEeec-CCCC----CCCCcchHhhhCCChHHHhCCCC
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACF-QTYVR-PTCN----QLLSDFCKDLTGIQQIQVDRGVT 170 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F-~~lVk-P~~~----p~Is~~~~~LTGIt~e~l~~ap~ 170 (375)
..||+||+||||+ +|..++|||||||++| .++++++++ +.+|+ |... +.++..+..+||||++||+++|+
T Consensus 9 ~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 9 DNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp TCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 5799999999997 5778999999999765 345777775 55686 5410 12334456678999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hHH-HHHHhcCCCCCCHHHHHH
Q 017210 171 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LKV-PFHEVFGGVRCNLKEAVE 247 (375)
Q Consensus 171 ~~evl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iD--t~~-l~~~~~~~~~~~L~~l~~ 247 (375)
++||+++|++|+++..-.+...+++||+.||+ .||++++.+.|..+ .++++| |.. +.|.+++. +.
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~-~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~----~~---- 152 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDR-RFLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQ----IA---- 152 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHH-HHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHH----HH----
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhH-HHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcc----cc----
Confidence 99999999999943221122345667889996 99999998877543 357999 665 77877642 21
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 248 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 248 ~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
-+++.. .+|||++||++|..++....+...
T Consensus 153 -~~~~~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 153 -AAHIKE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp -TTSCCC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred -ccCCCC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 167664 689999999999999998877543
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.92 E-value=4.7e-09 Score=95.44 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=96.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHh--hhCCChHHHhCCCCHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD--LTGIQQIQVDRGVTLSEA 174 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~--LTGIt~e~l~~ap~~~ev 174 (375)
..-+++|+|+|+. ....++|+||+|. .+|+ +|+..+..-.....++++.+ +.++.+.......+++++
T Consensus 22 m~r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i 91 (190)
T 4hec_A 22 MVRYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQI 91 (190)
T ss_dssp EEEEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHH
T ss_pred eeEEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHH
Confidence 3568999999973 3567999999984 5775 47766543111246777765 677776666667899999
Q ss_pred HHHHHHHHhhCCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCC-CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCC
Q 017210 175 LLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP-YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLA 252 (375)
Q Consensus 175 l~~f~~fl~~~~lv~~n~~vv~~-a~FD~~~fL~~~~~~~gi~~P~-~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~ 252 (375)
..+|.+||.... +....|++| +.||. .+|...+...+ ..|. +.....|++.++... +. ..++
T Consensus 92 ~~~L~~FL~~~~--~~~~eLwa~~~~yD~-~~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~~-g~-----------~~lp 155 (190)
T 4hec_A 92 RLDLEEFLRIDG--TDSIELWAWVGAYDH-VALCQLWGPMT-ALPPTVPRFTRELRQLWEDR-GC-----------PRMP 155 (190)
T ss_dssp HHHHHHHTTTTS--SCEEEEEESSCHHHH-HHHHTTTSSGG-GSCTTSCSSCEEHHHHHHHT-TC-----------CCCC
T ss_pred HHHHHHHHHhcC--CCCCEEEEecccccH-HHHHHHhcccc-cCCcccchhhHHHHHHHHHc-CC-----------CCCC
Confidence 999999997642 123345554 78995 77765433211 1221 212235666554321 11 1222
Q ss_pred -CCCCCCcHHHHHHHHHHHHHHHHH
Q 017210 253 -WQGRAHCGLDDAKNTARLLALLMH 276 (375)
Q Consensus 253 -~~g~~HrALdDA~atA~L~~~ll~ 276 (375)
..+.+|+||.||+..+..|..|..
T Consensus 156 ~~~~~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 156 PRPRDVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHHHHhC
Confidence 234579999999999999988753
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.85 E-value=4.1e-08 Score=103.36 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=104.7
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHH
Q 017210 98 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 177 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~ 177 (375)
.+|+||+||||+ ++..++|++|+++.- +|+. .||.+. +.. + | +.++++++++++.
T Consensus 27 ~~va~DtEttgl---~~~~~~iv~I~~~~~---~g~~-----~yip~~-~~~-------~-~-----~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 27 PVFAFDTETDSL---DNISANLVGLSFAIE---PGVA-----AYIPVA-HDY-------L-D-----APDQISRERALEL 81 (605)
T ss_dssp SSEEEEEEESCS---CTTTCCEEEEEEEEE---TTEE-----EEEECC-CCS-------T-T-----CCCCCCHHHHHHH
T ss_pred CeEEEEEecCCC---CcccCceEEEEEEEc---CCcE-----EEEecc-ccc-------c-c-----cccccCHHHHHHH
Confidence 579999999987 456789999998842 4543 355222 110 1 2 2346679999999
Q ss_pred HHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC-
Q 017210 178 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ- 254 (375)
Q Consensus 178 f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~~- 254 (375)
|.+|+.+..+ ..|+||+.||+ .+|.+ +|+..+ ..++||....+.+.+ ..+++|++++++| |+...
T Consensus 82 L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 82 LKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 9999998532 25788899997 78864 687653 358999876665554 3479999999988 76531
Q ss_pred -------C-------------CCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 255 -------G-------------RAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 255 -------g-------------~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
| ..|.|..||.+|++|+..|..+..+
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0267999999999999988776655
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.75 E-value=2.7e-07 Score=88.73 Aligned_cols=172 Identities=18% Similarity=0.158 Sum_probs=120.6
Q ss_pred cEEEEEEeeCCCCCCCC-------------------CCCcEEEEceEEEEcCCCe-----EeeEEEEeecCCCCCCCCcc
Q 017210 98 YFVVIDFEATCDKDKNP-------------------YPQEIIEFPSVIVSSVTGQ-----LEACFQTYVRPTCNQLLSDF 153 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~-------------------~~~eIIEIGAV~vd~~~g~-----i~d~F~~lVkP~~~p~Is~~ 153 (375)
.||++|+|.||+-. .| ..-.||+||...++ .+|+ ..-.|...+.|.. ....+.
T Consensus 35 ~fVAiDtEFpGvv~-rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~-~~g~~p~~~~~wqFNF~f~~~~-d~~~~~ 111 (285)
T 4gmj_B 35 NYVAMDTEFPGVVA-RPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 111 (285)
T ss_dssp CEEEEEEECCCCCC-CCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CEEEEEEEecCccC-CCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeec-cCCCcCCCeeEEEEEEEecccc-ccccHH
Confidence 59999999999832 21 11259999999997 4554 3456887888875 335666
Q ss_pred hHhh---hCCChHHHh-CCCCHHHHHHHHHHHHhhCCCC-CccE-EEEEcCcchHHHHHHHHHHHcCCCCCC--------
Q 017210 154 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNF-AVVTWSNWDCRVMLESECRFKKIWKPP-------- 219 (375)
Q Consensus 154 ~~~L---TGIt~e~l~-~ap~~~evl~~f~~fl~~~~lv-~~n~-~vv~~a~FD~~~fL~~~~~~~gi~~P~-------- 219 (375)
+.++ +||+-.... .|.+..+ |.+.+..++++ ..+. -|.+|+.+|+ .||-+.+-.. ++|.
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~~----f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~--~LP~~~~eF~~~ 184 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNS--NLPEEELDFFEI 184 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTS--CCCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHcCCCHHH----HHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCC--CCCCCHHHHHHH
Confidence 6665 899888774 6887754 55555555443 2333 3445788998 7887766533 3342
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 220 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 220 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
++..+.|++.+.+..-+ -+.+|+++++.++++..|..|.|-.|+..|+.+|.+|.+....
T Consensus 185 l~~~FP~vYD~K~l~~~~~~-l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 185 LRLFFPVIYDVKYLMKSCKN-LKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp HHHHCSCEEEHHHHGGGSTT-CCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCchhhhHHHHHHhccc-cCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 12357788877654323 2458999999999998888999999999999999999876543
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.55 E-value=2.3e-07 Score=99.28 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=92.7
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHHH
Q 017210 99 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 178 (375)
Q Consensus 99 fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~f 178 (375)
+||||+||||+ ++..++|..|.+ .+..++++ | .+.|. .++++++.|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi--~~~~~~~~---~--~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVI--YDYSTAEY---V--SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEE--EETTTTEE---E--EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEE--EecCCCcE---E--EEChH------------------------HHHHHHHHH
Confidence 58999999997 456677766633 34223332 1 22332 234567788
Q ss_pred HHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHH---cCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc----
Q 017210 179 DKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF---KKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA---- 249 (375)
Q Consensus 179 ~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~---~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l---- 249 (375)
.+|+. ... ..|+||+ .||+ .+|.+.+++ .|+..++ ..++||..+++.+.+ ..+++|+++++.|
T Consensus 47 ~~~l~-~~~----~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVA-RGG----LIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHH-TTC----CEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHh-cCC----eEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 88886 321 3578899 9997 889877643 3776531 469999876665544 3467787777666
Q ss_pred ----CC-------CC----------CC---C------------CCcHHHHHHHHHHHHHHHHHhccccc
Q 017210 250 ----GL-------AW----------QG---R------------AHCGLDDAKNTARLLALLMHRGFKFS 282 (375)
Q Consensus 250 ----gI-------~~----------~g---~------------~HrALdDA~atA~L~~~ll~~~~~~~ 282 (375)
|. ++ .| . .|.|..||.+|.+|+..|..+..+.+
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 31 10 01 1 47899999999999999988766544
No 22
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.53 E-value=6.4e-06 Score=77.87 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=121.5
Q ss_pred ccEEEEEEeeCCCCCCC--C----------------CCCcEEEEceEEEEcCCCeE-----eeEEEEeecCCCCCCCCcc
Q 017210 97 QYFVVIDFEATCDKDKN--P----------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 153 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~--~----------------~~~eIIEIGAV~vd~~~g~i-----~d~F~~lVkP~~~p~Is~~ 153 (375)
-.||.+|+|.+|.-... . ..-.||++|....+ .+|+. .-.|........ ...++.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 36999999999984211 0 12479999999998 46654 456666655543 234555
Q ss_pred hHhh---hCCChHHHh-CCCCHHHHHHHHHHHHhhCCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 017210 154 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 219 (375)
Q Consensus 154 ~~~L---TGIt~e~l~-~ap~~~evl~~f~~fl~~~~lv-~~n~~vv~-~a~FD~~~fL~~~~~~~gi~~P~-------- 219 (375)
+.++ +||+-+... .|.+.. +|.+.+-.++++ ..++.+++ ++.+|+ .+|-+-+- +-++|.
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~--~~~LP~~~~~F~~~ 174 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQ----YFAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILT--NSNLPEEELDFFEI 174 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHH--TSCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHhcCCCHH----HHHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhc--CCCCCCCHHHHHHH
Confidence 5443 799988875 688887 466666666554 34444444 688998 77777654 334442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhccc
Q 017210 220 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 220 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
++..+.|++.+.+..-+. +.+|..+++.+|++..|..|.|-.|+..|+.+|.+|.+....
T Consensus 175 l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 175 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp HHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 123577888766554333 467999999999998888999999999999999999877654
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.42 E-value=8e-06 Score=78.59 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=118.4
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEceEEEEcCCCeE------eeEEEEeecCCCCCCCCc
Q 017210 97 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL------EACFQTYVRPTCNQLLSD 152 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~------------------~~~eIIEIGAV~vd~~~g~i------~d~F~~lVkP~~~p~Is~ 152 (375)
-.||.+|+|.+|.-.... ..-.||++|....+ .+|+. .-.|..+..... ....+
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccH
Confidence 469999999999842110 23479999999998 45553 456776655543 22444
Q ss_pred chHh---hhCCChHHHh-CCCCHHHHHHHHHHHHhhCCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC-------
Q 017210 153 FCKD---LTGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP------- 219 (375)
Q Consensus 153 ~~~~---LTGIt~e~l~-~ap~~~evl~~f~~fl~~~~lv-~~n~~vv~-~a~FD~~~fL~~~~~~~gi~~P~------- 219 (375)
.+.+ -+||+-+... .|.+.. +|.+.+-.++|+ ..++.+++ ++.+|+ .||-+-+. +-++|.
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt--~~~LP~~~~~F~~ 188 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILM--NDSMPNNKEDFEW 188 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHT--TSCCCSSHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhc--cccCCcCHHHHHH
Confidence 4444 3889888774 688876 566666676655 33444555 688998 78776654 334442
Q ss_pred ----CCCceeehHHHHHHhcCC--------------CCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 220 ----YFNRWINLKVPFHEVFGG--------------VRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 220 ----~~~~~iDt~~l~~~~~~~--------------~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
++..+.|++.+.+..-+. .+.+|.++++.+|++..|..|.|-.||..|+.+|.+|.+..
T Consensus 189 ~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 189 WVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 123578998777654322 13589999999999988889999999999999999998765
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.40 E-value=7.6e-06 Score=79.97 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=120.3
Q ss_pred ccEEEEEEeeCCCCCCC--CC----------------CCcEEEEceEEEEcCCCeE-----eeEEEEeecCCCCCCCCcc
Q 017210 97 QYFVVIDFEATCDKDKN--PY----------------PQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 153 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~--~~----------------~~eIIEIGAV~vd~~~g~i-----~d~F~~lVkP~~~p~Is~~ 153 (375)
-.||.+|+|.+|+.... .. .-.||+||....| .+|+. .-.|..+..... ....+.
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 36999999999985211 11 1369999999998 56654 456777765543 234555
Q ss_pred hHhh---hCCChHHHh-CCCCHHHHHHHHHHHHhhCCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 017210 154 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 219 (375)
Q Consensus 154 ~~~L---TGIt~e~l~-~ap~~~evl~~f~~fl~~~~lv-~~n~~vv~-~a~FD~~~fL~~~~~~~gi~~P~-------- 219 (375)
+.++ +||+-+... +|.+.. +|.+.+-.++++ ..++-+++ ++.+|+ .||-+-+. +-++|.
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~----~F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt--~~~LP~~~~eF~~~ 195 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPA----DFAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMT--QIPLPAEYEEFYKI 195 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHH--CSCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhc--CCCCCCCHHHHHHH
Confidence 5444 699988875 688887 455666566554 33444444 588997 78776664 334442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 220 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 220 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
++..+.|++.+.+..-++ +.+|..+++.|+++..|..|.|-.||..|+.+|.+|.+..
T Consensus 196 l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 196 LCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 123577888776554332 4689999999999988999999999999999999998754
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.23 E-value=2.3e-05 Score=84.78 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=103.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 176 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~ 176 (375)
-+.++||+||+|..+.++..++||.||.+.- ++..+ + + .+| |..+.+...++-.+.+.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~---~~~~~--~-t-~~~---------------i~~~~v~~~~~E~~LL~ 192 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADG---SEARV--I-T-WKK---------------IDLPYVDVVSTEKEMIK 192 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECS---SCEEE--E-E-SSC---------------CCCSSEEECSCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEec---CCCee--E-e-ecc---------------ccccceEEcCCHHHHHH
Confidence 3699999999996545667899999986532 22211 1 1 122 11223555678889999
Q ss_pred HHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCC---------------------CCceeehHHHHHHh
Q 017210 177 RHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPY---------------------FNRWINLKVPFHEV 234 (375)
Q Consensus 177 ~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~P~~---------------------~~~~iDt~~l~~~~ 234 (375)
+|.+++..... .+++.+|+ +||+ .+|..-+..+|++.. + ....+|+..+++..
T Consensus 193 ~f~~~i~~~dP---DiivGyN~~~FDl-pyL~~Ra~~~gi~~~-lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 193 RFLRVVREKDP---DVLITYNGDNFDF-AYLKKRCEELGIKFT-LGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCC-CSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCC---CEEEEeCCCCccH-HHHHHHHHHcCCCcc-cccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 99999987431 23444554 7997 899988888888753 1 12357998888887
Q ss_pred cCCCCCCHHHHHH-HcCCCCCCCC------------------CcHHHHHHHHHHHHHHHH
Q 017210 235 FGGVRCNLKEAVE-MAGLAWQGRA------------------HCGLDDAKNTARLLALLM 275 (375)
Q Consensus 235 ~~~~~~~L~~l~~-~lgI~~~g~~------------------HrALdDA~atA~L~~~ll 275 (375)
+...+++|+++++ .+|.....-. +-.+.||..|.+|+.+++
T Consensus 268 ~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 268 INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778999999997 5787532111 113679999999877654
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00071 Score=74.47 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=101.7
Q ss_pred cEEEEEEeeCCCCCC--CCCCCcEEEEceEEEEcCCCeE--eeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHH
Q 017210 98 YFVVIDFEATCDKDK--NPYPQEIIEFPSVIVSSVTGQL--EACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 173 (375)
Q Consensus 98 ~fVVfDlETTGl~g~--~~~~~eIIEIGAV~vd~~~g~i--~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~e 173 (375)
+.+.|||||++.++. ++..|+||.|+.+.-. .|.. ..+-...+.+.. . +....|..-++-.+
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f~l~~~~--~----------~~~~~V~~~~sE~e 315 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVFTLNTCS--P----------ITGSMIFSHATEEE 315 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEEEESCCC--C----------BTTBEEEEESSHHH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEEEecCCC--C----------CCCCeEEECCCHHH
Confidence 589999999976543 3467999999987653 3321 111111122221 1 22345666778899
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCC-CCC------------------------------
Q 017210 174 ALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKP-PYF------------------------------ 221 (375)
Q Consensus 174 vl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~P-~~~------------------------------ 221 (375)
.|.+|.+|+.... -.+++.+|+ +||+ .+|..-++.+|++.. .+.
T Consensus 316 LL~~F~~~i~~~D---PDIIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 391 (919)
T 3iay_A 316 MLSNWRNFIIKVD---PDVIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNID 391 (919)
T ss_dssp HHHHHHHHHHHHC---CSEEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCT
T ss_pred HHHHHHHHHHHhC---CCEEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEc
Confidence 9999999998742 123344455 7997 899988888887731 110
Q ss_pred -CceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCCCCCC-------------------cHHHHHHHHHHHHHHH
Q 017210 222 -NRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQGRAH-------------------CGLDDAKNTARLLALL 274 (375)
Q Consensus 222 -~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~~g~~H-------------------rALdDA~atA~L~~~l 274 (375)
...+|+..+++..+...+++|+++++++ |.....-+| -.+.||..+.+|+.++
T Consensus 392 GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 392 GRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp TCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256888888877778899999998664 543211111 1267999999998876
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.66 E-value=0.0011 Score=65.97 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=97.9
Q ss_pred cEEEEEEeeCCCCCCCC----CCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHh------hhCCC---hH-
Q 017210 98 YFVVIDFEATCDKDKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD------LTGIQ---QI- 163 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~----~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~------LTGIt---~e- 163 (375)
..+.||+||++ . +.| ..++||.|+.+-. .+++. ..| .++++.... ..+.... +..++ ..
T Consensus 107 ~vlsfDIEt~~-~-~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 107 RVANCDIEVTG-D-KFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp CEEEEEEEECC-S-SCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred EEEEEEEEeCC-C-CCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCcccccccccccccccccccccc
Confidence 59999999998 2 223 2469999987533 34431 122 235443211 1111110 11111 11
Q ss_pred ----HHhCCCCHHHHHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHH-cCCC-------CC---------CCC
Q 017210 164 ----QVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF-KKIW-------KP---------PYF 221 (375)
Q Consensus 164 ----~l~~ap~~~evl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~-~gi~-------~P---------~~~ 221 (375)
.|....+-.+.|.+|.+++....- .+++.+|+ +||+ .+|..-++. +|++ .. .+.
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~dP---Dii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g 255 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKRP---AIFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYG 255 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSCC---SEEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---cEEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhhhC
Confidence 123456788999999999986421 23333565 7997 788777766 5531 00 000
Q ss_pred ---------CceeehHHHHHHh-cC-CCCCCHHHHHH-HcCCCCCCCCCc----------------HHHHHHHHHHHHHH
Q 017210 222 ---------NRWINLKVPFHEV-FG-GVRCNLKEAVE-MAGLAWQGRAHC----------------GLDDAKNTARLLAL 273 (375)
Q Consensus 222 ---------~~~iDt~~l~~~~-~~-~~~~~L~~l~~-~lgI~~~g~~Hr----------------ALdDA~atA~L~~~ 273 (375)
.-.+|+..+++.+ +. ..+++|+++++ .+|..-.. ++. .+.||..|.+|+.+
T Consensus 256 ~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d-~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 256 SKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLP-YDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp SCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCC-cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 1167998888884 65 78999999998 66654321 111 47899999999988
Q ss_pred H
Q 017210 274 L 274 (375)
Q Consensus 274 l 274 (375)
+
T Consensus 335 l 335 (388)
T 1noy_A 335 R 335 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.59 E-value=0.00029 Score=76.84 Aligned_cols=156 Identities=20% Similarity=0.100 Sum_probs=96.7
Q ss_pred cEEEEEEee-CCCCCCCCC----CCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHH
Q 017210 98 YFVVIDFEA-TCDKDKNPY----PQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLS 172 (375)
Q Consensus 98 ~fVVfDlET-TGl~g~~~~----~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~ 172 (375)
.+++||||| |+.+++.|. .+.||+||.+ + .+|. +-..++++.. .+..+.. |....+..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~---~~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGL---KKVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSC---EEEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCC---cEEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 689999999 765444443 3799999985 3 3443 1224556642 2221111 2333455567899
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCC---CC-C---------CCceeehHHHHHH-----
Q 017210 173 EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWK---PP-Y---------FNRWINLKVPFHE----- 233 (375)
Q Consensus 173 evl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~---P~-~---------~~~~iDt~~l~~~----- 233 (375)
+.|.+|.+|+.+. ..++-+|+ +||+ .+|..-+.++|+.. |. + ....+|+...++.
T Consensus 259 ~LL~~f~~~i~~~-----diivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~ 332 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----PIVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRN 332 (847)
T ss_dssp HHHHHHHHHHTTC-----SEEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHH
T ss_pred HHHHHHHHHhccC-----CEEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhh
Confidence 9999999999764 33333454 7998 89999999999863 21 1 1234687665532
Q ss_pred -hcC--CCCCCHHHHHH-HcCCCCCC------CC------CcHHHHHHHHHHHH
Q 017210 234 -VFG--GVRCNLKEAVE-MAGLAWQG------RA------HCGLDDAKNTARLL 271 (375)
Q Consensus 234 -~~~--~~~~~L~~l~~-~lgI~~~g------~~------HrALdDA~atA~L~ 271 (375)
.++ ..+++|+++++ .+|..-.. +. +-.+.||..|.+|+
T Consensus 333 y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 333 YAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122 35899999998 56653211 10 11367999999884
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.53 E-value=0.0015 Score=73.63 Aligned_cols=170 Identities=14% Similarity=0.050 Sum_probs=100.0
Q ss_pred cEEEEEEeeCCCC---CCCC----CCCcEEEEceEEEEcCCCeEeeEEEEee-cCCCCCCCCcch--HhhhCCChHHHhC
Q 017210 98 YFVVIDFEATCDK---DKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYV-RPTCNQLLSDFC--KDLTGIQQIQVDR 167 (375)
Q Consensus 98 ~fVVfDlETTGl~---g~~~----~~~eIIEIGAV~vd~~~g~i~d~F~~lV-kP~~~p~Is~~~--~~LTGIt~e~l~~ 167 (375)
..+.|||||++.. ...| ..|+||.|+.+.....+... ...+| .......+.++. .+-.++....|..
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 5999999998641 1122 35899999988764211111 11222 211101111111 1111222122445
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCccEEEEEcC-cchHHHHHHHH-HHHcCCCCCCCC------------------------
Q 017210 168 GVTLSEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESE-CRFKKIWKPPYF------------------------ 221 (375)
Q Consensus 168 ap~~~evl~~f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~-~~~~gi~~P~~~------------------------ 221 (375)
-.+-.+.|.+|.+|+....- .+++.+|+ +||+ .+|..- +..+|++++.+.
T Consensus 398 ~~sE~eLL~~F~~~I~~~DP---DIIvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~ 473 (1193)
T 2gv9_A 398 FDSEFEMLLAFMTLVKQYGP---EFVTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKI 473 (1193)
T ss_dssp ESSHHHHHHHHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CEEEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceE
Confidence 56788999999999997531 23444454 7997 777665 466787765221
Q ss_pred ----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCC-------------------CcHHHHHHHHHHHHHHH
Q 017210 222 ----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRA-------------------HCGLDDAKNTARLLALL 274 (375)
Q Consensus 222 ----~~~iDt~~l~~~~~~~~~~~L~~l~~~-lgI~~~g~~-------------------HrALdDA~atA~L~~~l 274 (375)
...+|+..+++..+...+++|++++++ +|....... +-.+.||..+.+|+.++
T Consensus 474 ~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 474 KVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024688777777677789999999975 665432111 11257999999998876
No 30
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.0015 Score=67.27 Aligned_cols=86 Identities=14% Similarity=-0.080 Sum_probs=58.3
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHHHH--hcC-CCCCCHHHHHHHcC-----
Q 017210 190 TNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPFHE--VFG-GVRCNLKEAVEMAG----- 250 (375)
Q Consensus 190 ~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~~~--~~~-~~~~~L~~l~~~lg----- 250 (375)
+..+|.||+-.|+ .+|-+.+- | ++|. +|..++||+.++.. +.. ....+|..|.+.+.
T Consensus 276 ~kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~ 351 (507)
T 3d45_A 276 GKLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD 351 (507)
T ss_dssp CCEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC
T ss_pred CCeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCC
Confidence 3566778888898 67766553 2 4442 13357899876543 111 23578999999986
Q ss_pred CCC-------------CCCCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 251 LAW-------------QGRAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 251 I~~-------------~g~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
.+. .+..|.|-+||..|+.+|.+|.....
T Consensus 352 ~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 352 PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 221 24579999999999999999986543
No 31
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.69 E-value=0.0059 Score=63.38 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=84.0
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHH
Q 017210 98 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 177 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~ 177 (375)
..|.+|+|+.++ ++...+++-|+.. . +++. | +| . ++++.
T Consensus 11 ~~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i------------------~-----------~~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA------------------P-----------EPYKA 49 (540)
T ss_dssp TTCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC------------------S-----------SHHHH
T ss_pred CceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee------------------h-----------hhHHH
Confidence 469999999986 4567777665433 2 3332 1 11 0 36788
Q ss_pred HHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCC
Q 017210 178 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 257 (375)
Q Consensus 178 f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~ 257 (375)
|.+|+++... |+||+.||+ . ++|+..+ .++||...+..+.+. +++|++++++|...+ .
T Consensus 50 l~~~l~d~~k------V~hn~K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---g 107 (540)
T 4dfk_A 50 LRDLKEARGL------LAKDLSVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---T 107 (540)
T ss_dssp HTTCSSBCST------THHHHHHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---C
T ss_pred HHHHHcCCCE------EEeccHHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---c
Confidence 8889888332 456678996 3 5788752 578998766666655 899999999886543 3
Q ss_pred CcHHHHHHHHHHHHHHHHHhc
Q 017210 258 HCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 258 HrALdDA~atA~L~~~ll~~~ 278 (375)
|+|..||.+|++|+..|..+.
T Consensus 108 k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 108 EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999888776
No 32
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=96.46 E-value=0.00082 Score=74.53 Aligned_cols=42 Identities=7% Similarity=-0.055 Sum_probs=36.9
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCC---------------CCCCccccccccccc
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEF---------------YNNPTYQHDFGSWST 85 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~---------------~~kpiyg~e~~~~~~ 85 (375)
-+..+++++|++|++||++|||||||+ +||||+|+|+++.+.
T Consensus 129 DG~~~~~eLv~~A~~~G~~aiAITDH~~~~G~~~~~~~a~~~gIk~I~G~E~~~~~~ 185 (1041)
T 3f2b_A 129 DAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDD 185 (1041)
T ss_dssp TCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC
T ss_pred cccCCHHHHHHHHHHCCCCEEEEecccchhhHHHHHHHHHHCCCEEEEEEEEEEEeC
Confidence 356789999999999999999999994 489999999998654
No 33
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.95 E-value=0.15 Score=55.99 Aligned_cols=164 Identities=10% Similarity=0.038 Sum_probs=95.7
Q ss_pred cEEEEEEeeCCCCCCCC----CCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHh---------hhCCChHH
Q 017210 98 YFVVIDFEATCDKDKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD---------LTGIQQIQ 164 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~----~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~---------LTGIt~e~ 164 (375)
+.+.||||++..++ .| ..++||.|+.+ |..+.+.+ .|.-+-.|.. ...++..+ -..+..+.
T Consensus 109 r~~~~DIEv~~~~~-fPd~~~~~~~Ii~It~~--d~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 109 RVANFDIEVTSPDG-FPEPSQAKHPIDAITHY--DSIDDRFY-VFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp CEEEEEEECCCTTS-SCCTTTCCSCCCEEEEE--ETTTTEEE-EEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred cEEEEeEEeCCCCC-CCCcccCCCCEEEEEEE--eCCCCEEE-EEEeeccccc--ccccccccccccccccccccccccc
Confidence 58999999987533 33 36899999777 54444321 2211222211 11122111 11233443
Q ss_pred HhC-----CCCHHHHHHHHHHHHhhCCCCCccEEEE-EcC-cchHHHHHHHHHHH-cCCCC----CCCC-----------
Q 017210 165 VDR-----GVTLSEALLRHDKWLENKGIKNTNFAVV-TWS-NWDCRVMLESECRF-KKIWK----PPYF----------- 221 (375)
Q Consensus 165 l~~-----ap~~~evl~~f~~fl~~~~lv~~n~~vv-~~a-~FD~~~fL~~~~~~-~gi~~----P~~~----------- 221 (375)
+++ -++-.+.|.+|.+|+....- . +|+ +|+ .||+ .+|..-++. +|++. ..+.
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DP---D-IItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~ 257 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTP---V-ILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMY 257 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCC---S-EEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhc
Confidence 332 35778999999999986421 2 344 454 7997 888777775 57531 1111
Q ss_pred ----------CceeehHHHHHHh-c-CCCCCCHHHHHHHc-CCCCCCCCC----------------cHHHHHHHHHHHHH
Q 017210 222 ----------NRWINLKVPFHEV-F-GGVRCNLKEAVEMA-GLAWQGRAH----------------CGLDDAKNTARLLA 272 (375)
Q Consensus 222 ----------~~~iDt~~l~~~~-~-~~~~~~L~~l~~~l-gI~~~g~~H----------------rALdDA~atA~L~~ 272 (375)
.-.+|+..+++.. + ...+++|+++++++ |..-.. .| -.+.||..+.+|+.
T Consensus 258 G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d-~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~ 336 (903)
T 3qex_A 258 GSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLK-YDGPISKLRESNHQRYISYNIIAVYRVLQIDA 336 (903)
T ss_dssp EEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccc-cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 1256888888763 2 56689999998765 332221 11 12679999999997
Q ss_pred H
Q 017210 273 L 273 (375)
Q Consensus 273 ~ 273 (375)
+
T Consensus 337 K 337 (903)
T 3qex_A 337 K 337 (903)
T ss_dssp H
T ss_pred H
Confidence 7
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.83 E-value=0.15 Score=55.16 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=91.0
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHH
Q 017210 98 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 177 (375)
Q Consensus 98 ~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~ 177 (375)
+.+.||||+.+ ..+|+.||.. + . +. +..-.+=.|.. . - .+.+..|..-++-.+.|.+
T Consensus 154 rilsfDIE~~~-------~g~i~~I~~~--~-~-~~--~~v~~l~~~~~-~-~--------~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTR-------HGELYCIGLE--G-C-GQ--RIVYMLGPENG-D-A--------SSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECT-------TSCEEEEEEE--E-T-TE--EEEEEESSCCS-C-C--------TTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcC-------CCCEEEEEec--C-C-CC--CeEEEEecCCC-C-C--------CCCCceEEEeCCHHHHHHH
Confidence 59999999994 1369999732 2 1 21 11112212211 0 0 1122234444577899999
Q ss_pred HHHHHhhCCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCC-------------C-----------CceeehHHHHH
Q 017210 178 HDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPY-------------F-----------NRWINLKVPFH 232 (375)
Q Consensus 178 f~~fl~~~~lv~~n~~vv~~a-~FD~~~fL~~~~~~~gi~~P~~-------------~-----------~~~iDt~~l~~ 232 (375)
|.+|+....- .+++.+|+ +||+ .+|..-+..+|++.. + + .-.+|+..+.+
T Consensus 211 f~~~i~~~dP---Dii~g~N~~~FD~-pyL~~Ra~~~~i~~~-lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk 285 (786)
T 3k59_A 211 LNAWFANYDP---DVIIGWNVVQFDL-RMLQKHAERYRLPLR-LGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALK 285 (786)
T ss_dssp HHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHHTCCCC-CBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHH
T ss_pred HHHHHHHcCC---CEEEecCCccCcH-HHHHHHHHHhCCCce-eccCCCcccccccccCCCceeEEEcCEEEEEhHHHHH
Confidence 9999997531 23444554 7997 889888888887631 1 0 11468877776
Q ss_pred H-hcCCCCCCHHHHHHHc-CCCCCC-CCC-------------------cHHHHHHHHHHHHHHH
Q 017210 233 E-VFGGVRCNLKEAVEMA-GLAWQG-RAH-------------------CGLDDAKNTARLLALL 274 (375)
Q Consensus 233 ~-~~~~~~~~L~~l~~~l-gI~~~g-~~H-------------------rALdDA~atA~L~~~l 274 (375)
. .+...+++|+++++++ |..-.. ..| -.+.||..+.+|+.++
T Consensus 286 ~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 286 SAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4567899999999875 433211 111 1268999999998874
No 35
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=95.64 E-value=0.003 Score=69.35 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=36.0
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCC---------------CCCCcccccccccc
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEF---------------YNNPTYQHDFGSWS 84 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~---------------~~kpiyg~e~~~~~ 84 (375)
-+..+++++|++|+++|+++||||||. +||||+|+|++...
T Consensus 19 DG~~~~~elv~~A~~~Gl~alAITDH~~~~G~~~~~~~~~~~gIk~I~G~Ei~~~~ 74 (910)
T 2hnh_A 19 DGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQC 74 (910)
T ss_dssp SCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEeCCcchhHHHHHHHHHHCCCeEEEEEEEEEec
Confidence 467889999999999999999999993 58899999988754
No 36
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=94.50 E-value=0.53 Score=47.36 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=60.6
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCC
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQ 254 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-lgI~~~ 254 (375)
..|.+++.+..+ .-|.|++.+|+ ..|. +.+|+.. ..++||.. +..+.+..+++|+.|+++ +|+...
T Consensus 172 ~~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~----~~~fDT~l-Aa~lL~~~~~gL~~Lv~~~Lg~~l~ 238 (428)
T 3saf_A 172 YILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYV----VNMFDTHQ-AARLLNLGRHSLDHLLKLYCNVDSN 238 (428)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCC----SSEEEHHH-HHHHTTCSCCSHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCc----Cceeechh-HHHHhCCCCCCHHHHHHHHcCCCCC
Confidence 456667777533 24677889997 5554 2468764 25789974 444555556899999964 576543
Q ss_pred CC---------------CCcHHHHHHHHHHHHHHHHHhccc
Q 017210 255 GR---------------AHCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 255 g~---------------~HrALdDA~atA~L~~~ll~~~~~ 280 (375)
.. .+-|..||..+.+|+..|..+..+
T Consensus 239 K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 239 KQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 144778999999999888766544
No 37
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.36 E-value=0.011 Score=66.68 Aligned_cols=42 Identities=5% Similarity=-0.173 Sum_probs=36.9
Q ss_pred ccccCchhHhHHHhh--cCCcceeeCcCC---------------CCCCccccccccccc
Q 017210 44 TIVHPGGDAGESIHQ--LSSEFVEYSNEF---------------YNNPTYQHDFGSWST 85 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~--~g~~aiaitd~~---------------~~kpiyg~e~~~~~~ 85 (375)
-+..+++++|++|++ +|++|||||||+ +||||.|+|++...+
T Consensus 20 DG~~~~~elv~~A~~~~~G~~alAITDH~~~~G~~~f~~~a~~~gIk~I~G~E~~~~~~ 78 (1220)
T 2hpi_A 20 DGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAE 78 (1220)
T ss_dssp TCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEESS
T ss_pred cccCCHHHHHHHHHhccCCCCEEEEEecCcchhHHHHHHHHHHcCCeEEEEEEEEEecc
Confidence 367889999999999 999999999993 589999999987654
No 38
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=94.33 E-value=0.057 Score=56.61 Aligned_cols=134 Identities=16% Similarity=0.040 Sum_probs=84.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 176 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~ 176 (375)
..-..+|+||++. ++...+++-|+.. . +++ ..||.+. . .+++.
T Consensus 29 ~~~~aldtE~~~~---~~~~a~Lvgisla--~--~~~-----a~yIp~~------~-------------------~~~l~ 71 (592)
T 3pv8_A 29 ADKAALVVEVVEE---NYHDAPIVGIAVV--N--EHG-----RFFLRPE------T-------------------ALADP 71 (592)
T ss_dssp CSEEEEEEECCSS---SCTTCCCCEEEEE--E--TTE-----EEEECHH------H-------------------HTTCH
T ss_pred ccCcEEEEEEcCC---ccCcccEEEEEEE--c--CCc-----eEEEccc------h-------------------hhHHH
Confidence 4467999999986 4566777655333 2 122 1344211 0 23456
Q ss_pred HHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 017210 177 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 254 (375)
Q Consensus 177 ~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~~ 254 (375)
.|..|+.+..+ ..++||+.||+ .+|. ++|+..+ ..+.||......+-+ ..+++|++++++| |....
T Consensus 72 ~Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~ 139 (592)
T 3pv8_A 72 QFVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVR 139 (592)
T ss_dssp HHHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSC
T ss_pred HHHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCc
Confidence 78888987532 35778899997 6664 5788763 357899754443333 3479999999766 44321
Q ss_pred --------C----------CCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 255 --------G----------RAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 255 --------g----------~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
| ..+.|..||..|.+|+..|..+..
T Consensus 140 ~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 140 PDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp CHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 014467899999999888765543
No 39
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=93.71 E-value=0.15 Score=53.22 Aligned_cols=129 Identities=9% Similarity=-0.018 Sum_probs=77.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHH
Q 017210 97 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 176 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~ 176 (375)
+.+++||+||+. ++..+.++-+|. ++. + ....|.. .. . +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~--~~~--~-~~~~~~~-------------------~~--------~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGY--MNI--E-DHSEYKI-------------------GN--------S----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEE--EES--S-CTTCEEE-------------------ES--------C----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEE--EeC--C-ceEEEEe-------------------ch--------h----HH
Confidence 569999999984 345567777775 331 1 1111111 00 1 46
Q ss_pred HHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCC-----CCCC-------CC-------------------cee
Q 017210 177 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIW-----KPPY-------FN-------------------RWI 225 (375)
Q Consensus 177 ~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~-----~P~~-------~~-------------------~~i 225 (375)
+|++|+.... ..+++||..||. .||.+.+...|.. .|.. .. .++
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 6777887642 235678889996 8888888887521 1100 00 122
Q ss_pred ehHHHHHHhcCCCCCCHHHHHHHcCCCCCC---------------C---CCcHHHHHHHHHHHHHHHHHh
Q 017210 226 NLKVPFHEVFGGVRCNLKEAVEMAGLAWQG---------------R---AHCGLDDAKNTARLLALLMHR 277 (375)
Q Consensus 226 Dt~~l~~~~~~~~~~~L~~l~~~lgI~~~g---------------~---~HrALdDA~atA~L~~~ll~~ 277 (375)
|+..+. +.+|+.+++.|+++... . .+-.+.|++.|++++...+..
T Consensus 121 Ds~~~~-------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 121 DSLKKL-------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp EHHHHS-------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHhhh-------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332221 46999999999986210 0 123488999999998876544
No 40
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=93.31 E-value=0.34 Score=48.75 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=68.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHH
Q 017210 163 IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPF 231 (375)
Q Consensus 163 e~l~~ap~~~evl~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~ 231 (375)
+.+..+.-|..|++.+.+ + ++.+|.||.-.|+ -++-+.+ .| ++|. +|..++||+.++
T Consensus 262 ~~l~~~~Gfr~V~~~L~~----s----~KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la 329 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN----S----GKLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMA 329 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH----H----CCEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh----C----CCceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhh
Confidence 446677777777777654 1 3457778888897 5565533 33 4442 134688998776
Q ss_pred HHh-cC--CCCCCHHHHHHHcCCC------------------CCCCCCcHHHHHHHHHHHHHHHHHhc
Q 017210 232 HEV-FG--GVRCNLKEAVEMAGLA------------------WQGRAHCGLDDAKNTARLLALLMHRG 278 (375)
Q Consensus 232 ~~~-~~--~~~~~L~~l~~~lgI~------------------~~g~~HrALdDA~atA~L~~~ll~~~ 278 (375)
... +. ....+|.++.+.+.-. ..+..|.|-+||..|+.+|.+|....
T Consensus 330 ~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 330 STQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp TSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 432 11 1356899998876421 12456999999999999999998653
No 41
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=92.98 E-value=0.033 Score=53.66 Aligned_cols=29 Identities=10% Similarity=-0.089 Sum_probs=25.9
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCCCC
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 72 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~~~ 72 (375)
-+..+++++|++|++.|.++||||||..+
T Consensus 25 DG~~~~~elv~~A~~~Gl~~iaiTDH~~~ 53 (301)
T 3o0f_A 25 DGTETPRTLVEQARKLGLHGVAIADHDTT 53 (301)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECCBTCC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 46778999999999999999999999754
No 42
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=91.84 E-value=0.068 Score=50.65 Aligned_cols=29 Identities=0% Similarity=-0.080 Sum_probs=25.6
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCCCC
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 72 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~~~ 72 (375)
-+..++++++++|++.|.++||||||..+
T Consensus 14 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~ 42 (292)
T 2yb1_A 14 DGALTPTEVIDRAAARAPALLALTDHDCT 42 (292)
T ss_dssp TCSSCHHHHHHHHHTTCCSEEEECCBTCC
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 35678899999999999999999999754
No 43
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=90.57 E-value=0.6 Score=42.23 Aligned_cols=90 Identities=13% Similarity=-0.047 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC---CCCCHHHHHH-HcC
Q 017210 175 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG---VRCNLKEAVE-MAG 250 (375)
Q Consensus 175 l~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~---~~~~L~~l~~-~lg 250 (375)
+..|.++|.+..+ .-|.|....|+ ..|.+ .+|+.. .+++|++.++...+|. .+.+|..+++ .+|
T Consensus 97 L~~L~~lL~d~~i----~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg 164 (206)
T 1vk0_A 97 LKDLYRFFASKFV----TFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVLW 164 (206)
T ss_dssp GHHHHHHHTCSSS----EEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHC
T ss_pred HHHHHHHhcCCCc----eEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhC
Confidence 3447778877533 23445568897 55643 357653 4689998887666663 4689999885 567
Q ss_pred CCC-CC--------------CCCcHHHHHHHHHHHHHHHHH
Q 017210 251 LAW-QG--------------RAHCGLDDAKNTARLLALLMH 276 (375)
Q Consensus 251 I~~-~g--------------~~HrALdDA~atA~L~~~ll~ 276 (375)
+++ .. +-+-|..||..+.+|+.+|.+
T Consensus 165 ~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 165 SDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 766 21 236689999999999998864
No 44
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=89.37 E-value=1.2 Score=39.49 Aligned_cols=100 Identities=16% Similarity=0.001 Sum_probs=60.2
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCC
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAW 253 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~ 253 (375)
..+.+++.+..+ .-|.|+..+|+ ..|.+ .+|+.. . .++|+..++..+.+ ..+++|+++++.+ |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~~---~~gi~~---~-~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLLR---DFDVKL---E-SFVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHHH---HHCCCC---C-SEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHHH---HCCCCC---C-CEEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 356777877532 24566778886 55542 268764 2 38896556666654 3578999999877 6543
Q ss_pred C-----------C------CCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Q 017210 254 Q-----------G------RAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQ 290 (375)
Q Consensus 254 ~-----------g------~~HrALdDA~atA~L~~~ll~~~~~~~i~~~l~~~ 290 (375)
. . ..+-|..||.++.+|+..|.++..+. +++.|.
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~---~~~~~~ 204 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTV---QVFALN 204 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchh---hhhhhc
Confidence 1 0 11336789999999999887766543 444443
No 45
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=88.22 E-value=2.1 Score=41.80 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=61.3
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCC-CCCHHHHHHHc-CCCC
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGV-RCNLKEAVEMA-GLAW 253 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~-~~~L~~l~~~l-gI~~ 253 (375)
..|.+++.+..+ .-|.|++.+|+ ..|.+ .+|+.. ..++||...+ .+.+.. +++|+++++.| |+..
T Consensus 64 ~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa-~lL~~~~~~~L~~L~~~~l~~~l 130 (375)
T 1yt3_A 64 SPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELP----QPLIDTQILA-AFCGRPMSWGFASMVEEYSGVTL 130 (375)
T ss_dssp HHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCC----SSEEEHHHHH-HHTTCCTTCCHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCC----CcEEEcHHHH-HHcCCCCChhHHHHHHHHcCCCC
Confidence 457777877532 24677889997 56643 357764 2578997544 344443 79999999876 7654
Q ss_pred CCC---------C------CcHHHHHHHHHHHHHHHHHhccc
Q 017210 254 QGR---------A------HCGLDDAKNTARLLALLMHRGFK 280 (375)
Q Consensus 254 ~g~---------~------HrALdDA~atA~L~~~ll~~~~~ 280 (375)
... . +-|..||..+.+|+..|..+..+
T Consensus 131 ~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp CCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 1 23668999999999988766543
No 46
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=86.58 E-value=0.22 Score=48.67 Aligned_cols=29 Identities=0% Similarity=-0.228 Sum_probs=25.7
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCCCC
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 72 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~~~ 72 (375)
.+..++++++++|++.|.++||||||+..
T Consensus 31 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~ 59 (343)
T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEY 59 (343)
T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 46678899999999999999999999654
No 47
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=84.83 E-value=2.8 Score=41.68 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCC
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQ 254 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~~ 254 (375)
..|.+++.+..+ .-|.|++.+|+ ..|.+ .+|+.. ..++||...+ .+.+..+++|+.+++.| |+...
T Consensus 149 ~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa-~LL~~~~~~L~~L~~~~lg~~l~ 215 (410)
T 2hbj_A 149 HILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYV----VGLFDTYHAS-KAIGLPRHSLAYLLENFANFKTS 215 (410)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHH-HHHTCSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCc----CCEEEcHHHH-HHhCCCccCHHHHHHHHcCCCCC
Confidence 456677777532 24677788997 55643 358764 2488997543 45555579999999877 65432
Q ss_pred CC---------------CCcHHHHHHHHHHHHHHHHHhcccc
Q 017210 255 GR---------------AHCGLDDAKNTARLLALLMHRGFKF 281 (375)
Q Consensus 255 g~---------------~HrALdDA~atA~L~~~ll~~~~~~ 281 (375)
.. -+-|..||..+.+|+..|..+..+.
T Consensus 216 K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 216 KKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 1236789999999999887765443
No 48
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=74.83 E-value=11 Score=37.69 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 017210 175 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 253 (375)
Q Consensus 175 l~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~ 253 (375)
+..|.+++.+. ..|.|+...|+ ..|. .+|+..+ .++||. ++..+++..+++|+.+++.| |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~~----~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEPQ----RLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCCC----EEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcCC----ceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 45577777763 24677778886 5553 4677642 688995 55555554589999999887 5432
Q ss_pred C---------CCC------CcHHHHHHHHHHHHHHHHHhcc
Q 017210 254 Q---------GRA------HCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 254 ~---------g~~------HrALdDA~atA~L~~~ll~~~~ 279 (375)
. .+. +.|..||..+.+|+..|..+..
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 3377899999999888866543
No 49
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=74.79 E-value=1.3 Score=40.31 Aligned_cols=29 Identities=7% Similarity=-0.194 Sum_probs=25.7
Q ss_pred cccCchhHhHHHhhcCCcceeeCcCCCCC
Q 017210 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNN 73 (375)
Q Consensus 45 ~~~~~~~~v~~a~~~g~~aiaitd~~~~k 73 (375)
+..++++++++|++.|.++||+|||....
T Consensus 14 G~~~~ee~v~~A~~~Gl~~iaiTDH~~~~ 42 (267)
T 2yxo_A 14 AEGHPEAYLEEARAKGLKGVVFTDHSPMP 42 (267)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEEEECCCC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 56778899999999999999999997653
No 50
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=73.62 E-value=1.4 Score=45.69 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=25.2
Q ss_pred cccCchhHhHHHhhcCCcceeeCcCCCC
Q 017210 45 IVHPGGDAGESIHQLSSEFVEYSNEFYN 72 (375)
Q Consensus 45 ~~~~~~~~v~~a~~~g~~aiaitd~~~~ 72 (375)
+..++++++++|++.|.++|+||||...
T Consensus 340 G~~t~eemv~~A~~~Gl~~IaiTDH~~~ 367 (578)
T 2w9m_A 340 GGASIREMAEATLTLGHEFLGTADHSRA 367 (578)
T ss_dssp CSSCHHHHHHHHHHTTCSEEEECEEBTT
T ss_pred CCCCHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 5677899999999999999999999754
No 51
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=69.66 E-value=1.6 Score=39.15 Aligned_cols=27 Identities=7% Similarity=-0.125 Sum_probs=24.1
Q ss_pred cccCchhHhHHHhhcCCcceeeCcCCC
Q 017210 45 IVHPGGDAGESIHQLSSEFVEYSNEFY 71 (375)
Q Consensus 45 ~~~~~~~~v~~a~~~g~~aiaitd~~~ 71 (375)
+..++++++++|++.|.++|+||||..
T Consensus 16 g~~~~~e~v~~A~~~Gl~~iaiTDH~~ 42 (245)
T 1m65_A 16 AYSTLSDYIAQAKQKGIKLFAITDHGP 42 (245)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEEEEECT
T ss_pred CCCcHHHHHHHHHHCCCCEEEECCCCC
Confidence 345788999999999999999999975
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=63.36 E-value=2.9 Score=43.31 Aligned_cols=29 Identities=3% Similarity=-0.051 Sum_probs=25.2
Q ss_pred cccCchhHhHHHhhcCCcceeeCcCCCCC
Q 017210 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNN 73 (375)
Q Consensus 45 ~~~~~~~~v~~a~~~g~~aiaitd~~~~k 73 (375)
+..++++++++|+++|+++|+||||....
T Consensus 350 G~~t~ee~v~~A~~~G~~~iaiTDH~~~~ 378 (575)
T 3b0x_A 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAV 378 (575)
T ss_dssp CSCCHHHHHHHHHHTTCSEEEEEEECTTT
T ss_pred CCCCHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 45578999999999999999999997643
No 53
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=62.69 E-value=3.1 Score=27.89 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=25.6
Q ss_pred cccccccCCCCCCccccccCCCCCCCCcccCCCCcccCCCCcCccc
Q 017210 324 QYHPSCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFE 369 (375)
Q Consensus 324 ~~~~~c~cg~~a~~~~v~k~Gpn~Gr~fy~C~~~~~~~~~~c~ff~ 369 (375)
|+.|+|.=|...-. +.||.-||. -.| ++++.|+||+
T Consensus 2 G~~P~Cd~GeqCAv----RkG~Rigkl-C~C-----~rg~~Cn~fl 37 (41)
T 1hy9_A 2 GQVPMCDAGEQCAV----RKGARIGKL-CDC-----PRGTSCNSFL 37 (41)
T ss_dssp CCCCBCCSSSCSEE----ECSSSEEEC-CBC-----CTTCCBCTTT
T ss_pred CcCCcCCccchhhh----hcccccchh-cCC-----CCCCcchhhh
Confidence 55677777765433 668888886 245 5889999996
No 54
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=61.43 E-value=3.1 Score=37.99 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=24.6
Q ss_pred ccccCchhHhHHHhhcCCcceeeCcCC
Q 017210 44 TIVHPGGDAGESIHQLSSEFVEYSNEF 70 (375)
Q Consensus 44 ~~~~~~~~~v~~a~~~g~~aiaitd~~ 70 (375)
-+..++++++++|++.|.+.|+||||.
T Consensus 32 Dg~~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 32 DGHLPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcCCC
Confidence 356788999999999999999999997
No 55
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=29.40 E-value=98 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=34.0
Q ss_pred ccEEEEEEeeCCCCCCCC----------------------CCCcEEEEceEEEEcCC---CeEeeEEEEeecCC
Q 017210 97 QYFVVIDFEATCDKDKNP----------------------YPQEIIEFPSVIVSSVT---GQLEACFQTYVRPT 145 (375)
Q Consensus 97 ~~fVVfDlETTGl~g~~~----------------------~~~eIIEIGAV~vd~~~---g~i~d~F~~lVkP~ 145 (375)
..||++|+|.||+..... ..-.||++|...++..+ +-..-.|+.++=|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 369999999999942110 12469999999997321 22467888887764
No 56
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=29.14 E-value=19 Score=33.64 Aligned_cols=26 Identities=4% Similarity=-0.239 Sum_probs=23.2
Q ss_pred cCchhHhHHHhhcCCcceeeCcCCCC
Q 017210 47 HPGGDAGESIHQLSSEFVEYSNEFYN 72 (375)
Q Consensus 47 ~~~~~~v~~a~~~g~~aiaitd~~~~ 72 (375)
.++++++++|.+-|.+.|++|||...
T Consensus 18 ~~~~e~~~~A~~~G~~~i~~TdH~~~ 43 (283)
T 3dcp_A 18 DDVEEMVLKAIELDFDEYSIVEHAPL 43 (283)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 36789999999999999999999754
No 57
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=28.23 E-value=12 Score=39.42 Aligned_cols=23 Identities=9% Similarity=-0.236 Sum_probs=9.6
Q ss_pred CCCCCcccCCCCcccCCCCcCcccccCC
Q 017210 346 KQGSVFFGCGNWTVTRGARCHFFEWAFT 373 (375)
Q Consensus 346 n~Gr~fy~C~~~~~~~~~~c~ff~W~~~ 373 (375)
..|+.||+|.+| ..|+|-.|..+
T Consensus 589 k~G~~f~gCs~y-----p~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKIF-----LGRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEEE-----C----------
T ss_pred cCCCeEEeCCCC-----cCCCCeecCCc
Confidence 457889999765 24999999753
No 58
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=24.75 E-value=23 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=22.1
Q ss_pred cccCchhHhHHHhhcCCcceeeCcCCC
Q 017210 45 IVHPGGDAGESIHQLSSEFVEYSNEFY 71 (375)
Q Consensus 45 ~~~~~~~~v~~a~~~g~~aiaitd~~~ 71 (375)
.+| +.+++++|+++ .+.+|||||+.
T Consensus 13 hvh-~~e~~~~A~~~-~~~i~itdH~~ 37 (212)
T 1v77_A 13 DIR-DKEAYELAKEW-FDEVVVSIKFN 37 (212)
T ss_dssp EEC-SHHHHHHHHHH-CSEEEEEEEES
T ss_pred CcC-HHHHHHHHHHH-hcEEEEeeccC
Confidence 344 89999999999 99999999965
No 59
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=24.21 E-value=1e+02 Score=28.11 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=62.7
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCHHHHHHHH
Q 017210 99 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 178 (375)
Q Consensus 99 fVVfDlETTGl~g~~~~~~eIIEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~~evl~~f 178 (375)
=.=||+|-.- ..-+|| .++-+.+|.- .+.|-+|.....+...+.--|||.-.+|.++.+ -.+..+
T Consensus 59 ttWiDIEG~p--------~DPVEl--AiyQP~sg~Y---IHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~v 123 (243)
T 3q7c_A 59 KTWMDIEGRP--------EDPVEI--ALYQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAV 123 (243)
T ss_dssp CCEEEEESCT--------TSCSEE--EEEETTTTEE---EEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHH
T ss_pred CeEEecCCCC--------CCCeEE--EEeccCCCcE---EEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHH
Confidence 3468999873 446888 4455678876 478888975222334445569999999988654 344555
Q ss_pred HHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeeh
Q 017210 179 DKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINL 227 (375)
Q Consensus 179 ~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt 227 (375)
++.|-. |.++-+.|+-|++..| .-+|-.- -..||+
T Consensus 124 i~~LP~------nMVlT~QGsDDIrkLl----d~hGRrD----iKlIDV 158 (243)
T 3q7c_A 124 IDALPR------NMVITCQGSDDIRKLL----ESQGRKD----IKLIDI 158 (243)
T ss_dssp HHHSCT------TCEEEESSHHHHHHHH----HHTTCTT----SEEEEC
T ss_pred HHhCCc------CcEEEeeChHHHHHHH----HhcCCcc----ceEEEe
Confidence 555544 4455567887875444 4455432 257886
No 60
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=22.61 E-value=41 Score=30.97 Aligned_cols=27 Identities=4% Similarity=-0.096 Sum_probs=22.4
Q ss_pred cccCchh---HhHHHhhcCCcceeeCcCCC
Q 017210 45 IVHPGGD---AGESIHQLSSEFVEYSNEFY 71 (375)
Q Consensus 45 ~~~~~~~---~v~~a~~~g~~aiaitd~~~ 71 (375)
+..+.++ ++++|.+-|.+.|++|||..
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~ 44 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPHHN 44 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCBSE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4445664 99999999999999999963
No 61
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=21.17 E-value=1.9e+02 Score=31.29 Aligned_cols=82 Identities=16% Similarity=0.053 Sum_probs=52.6
Q ss_pred HHHHHHHhhCCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCC
Q 017210 176 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQG 255 (375)
Q Consensus 176 ~~f~~fl~~~~lv~~n~~vv~~a~FD~~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g 255 (375)
+.|..|+.+..+ |..||+ .+| .++|+... .+.||.-....+-+. +++|+++++.||-...
T Consensus 340 ~~Lk~lLed~~i---------n~K~d~-~~L----~~~Gi~~~----~~~Dt~laayLl~p~-~~~l~~l~~~~gk~~~- 399 (832)
T 1bgx_T 340 KALRDLKEARGL---------LAKDLS-VLA----LREGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEWT- 399 (832)
T ss_dssp HHHHHCSSBCBT---------THHHHH-HHH----HHHTCCCC----BCCCHHHHHHHHCTT-CCSTTHHHHHHSCCCC-
T ss_pred HHHHHHHhCCCC---------ChHHHH-HHH----HHcCCccC----cccCHHHHHHHcCCC-CCCHHHHHHHhCCCch-
Confidence 457777776421 566775 455 45788752 467997544433344 7899999999975321
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcc
Q 017210 256 RAHCGLDDAKNTARLLALLMHRGF 279 (375)
Q Consensus 256 ~~HrALdDA~atA~L~~~ll~~~~ 279 (375)
.. .| .||..|.+|+..|..+..
T Consensus 400 ~~-ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 400 EE-AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp SS-HH-HHHHHHHHHHHHHHHHHT
T ss_pred HH-HH-HHHHHHHHHHHHHHHHHh
Confidence 11 24 699999888887765443
No 62
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=20.25 E-value=32 Score=28.39 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=30.3
Q ss_pred EEEceEEEEcCCCeEeeEEEEeecCCCCCCCCcchHhhhCCChHHHhCCCCH
Q 017210 120 IEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 171 (375)
Q Consensus 120 IEIGAV~vd~~~g~i~d~F~~lVkP~~~p~Is~~~~~LTGIt~e~l~~ap~~ 171 (375)
|.+|++.+| .+|+|. .++.+..+++|++.+++.+..-|
T Consensus 26 l~~Gii~lD-~~g~I~-------------~~N~~~e~~sG~~~~eviGk~~f 63 (125)
T 1nwz_A 26 LAFGAIQLD-GDGNIL-------------QYNAAEGDITGRDPKQVIGKNFF 63 (125)
T ss_dssp CSSEEEEEE-TTCBEE-------------EECHHHHHHHCCCHHHHTTSBCC
T ss_pred cCceEEEEC-CCCEEE-------------EEHHHHHHHhCCCHHHHcCCchh
Confidence 457999999 689885 26778899999999998766543
Done!