Query 017211
Match_columns 375
No_of_seqs 314 out of 2589
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 2.4E-23 5.2E-28 165.1 8.0 96 32-127 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.8 2.1E-19 4.5E-24 142.5 8.9 88 149-238 19-106 (106)
3 KOG1187 Serine/threonine prote 99.0 4.8E-10 1.1E-14 107.9 5.0 48 328-375 61-108 (361)
4 KOG3653 Transforming growth fa 98.5 3.1E-07 6.7E-12 88.0 7.3 27 347-374 215-241 (534)
5 PLN00113 leucine-rich repeat r 97.9 4.9E-05 1.1E-09 82.9 10.2 41 332-375 683-724 (968)
6 KOG0196 Tyrosine kinase, EPH ( 97.5 5.8E-05 1.3E-09 76.8 2.9 44 332-375 610-666 (996)
7 KOG2052 Activin A type IB rece 97.3 0.00012 2.6E-09 70.2 2.5 28 347-375 216-243 (513)
8 PLN03224 probable serine/threo 97.0 0.00054 1.2E-08 69.0 3.4 36 340-375 143-195 (507)
9 KOG1025 Epidermal growth facto 96.8 0.0045 9.7E-08 64.0 7.8 29 346-374 700-733 (1177)
10 KOG1026 Nerve growth factor re 96.5 0.0036 7.7E-08 64.7 5.5 29 347-375 491-525 (774)
11 PLN03225 Serine/threonine-prot 95.9 0.0062 1.4E-07 62.5 3.6 35 340-374 130-169 (566)
12 KOG0193 Serine/threonine prote 95.9 0.0046 1E-07 61.7 2.2 27 347-375 397-423 (678)
13 PTZ00284 protein kinase; Provi 95.3 0.013 2.7E-07 58.7 3.1 40 335-374 122-162 (467)
14 KOG0600 Cdc2-related protein k 94.8 0.013 2.9E-07 57.3 1.5 32 343-374 118-150 (560)
15 PF08693 SKG6: Transmembrane a 94.5 0.065 1.4E-06 33.7 3.5 20 259-278 11-30 (40)
16 KOG0663 Protein kinase PITSLRE 94.4 0.02 4.3E-07 53.6 1.7 33 343-375 77-110 (419)
17 KOG1035 eIF-2alpha kinase GCN2 94.3 0.012 2.7E-07 63.2 -0.0 35 340-374 477-512 (1351)
18 cd05104 PTKc_Kit Catalytic dom 94.1 0.038 8.2E-07 53.6 3.1 33 343-375 36-74 (375)
19 PTZ00283 serine/threonine prot 94.1 0.03 6.5E-07 56.6 2.5 35 340-374 30-65 (496)
20 KOG0192 Tyrosine kinase specif 94.1 0.036 7.8E-07 53.5 2.7 28 347-375 46-74 (362)
21 PTZ00036 glycogen synthase kin 93.7 0.052 1.1E-06 53.9 3.2 34 341-374 65-99 (440)
22 smart00090 RIO RIO-like kinase 93.5 0.061 1.3E-06 48.8 3.0 28 347-374 33-62 (237)
23 TIGR01982 UbiB 2-polyprenylphe 93.4 0.063 1.4E-06 53.3 3.2 31 343-374 119-149 (437)
24 cd05106 PTKc_CSF-1R Catalytic 93.4 0.065 1.4E-06 52.0 3.2 33 343-375 39-77 (374)
25 PF04478 Mid2: Mid2 like cell 93.3 0.1 2.2E-06 43.1 3.7 26 258-283 47-72 (154)
26 cd05596 STKc_ROCK Catalytic do 93.0 0.053 1.2E-06 52.4 1.9 36 339-374 40-76 (370)
27 KOG1094 Discoidin domain recep 92.7 0.27 5.8E-06 49.5 6.3 29 347-375 543-571 (807)
28 cd05107 PTKc_PDGFR_beta Cataly 92.6 0.087 1.9E-06 51.7 2.9 33 343-375 38-76 (401)
29 PF03109 ABC1: ABC1 family; I 92.5 0.036 7.7E-07 44.6 0.0 30 344-374 14-43 (119)
30 PLN00034 mitogen-activated pro 92.5 0.089 1.9E-06 50.4 2.8 28 347-374 79-107 (353)
31 cd05105 PTKc_PDGFR_alpha Catal 92.3 0.12 2.6E-06 50.7 3.5 33 343-375 38-76 (400)
32 cd05622 STKc_ROCK1 Catalytic d 92.3 0.093 2E-06 50.8 2.7 41 334-374 35-76 (371)
33 cd05621 STKc_ROCK2 Catalytic d 91.9 0.11 2.4E-06 50.3 2.6 39 336-374 37-76 (370)
34 KOG4236 Serine/threonine prote 91.9 0.098 2.1E-06 51.9 2.1 29 347-375 569-598 (888)
35 KOG1006 Mitogen-activated prot 91.5 0.057 1.2E-06 49.1 0.1 29 347-375 69-98 (361)
36 KOG0194 Protein tyrosine kinas 91.1 0.14 3.1E-06 50.9 2.5 29 347-375 162-195 (474)
37 KOG0574 STE20-like serine/thre 90.7 0.037 8.1E-07 51.0 -1.9 28 347-374 38-66 (502)
38 PTZ00426 cAMP-dependent protei 90.6 0.18 3.9E-06 48.2 2.6 32 343-374 31-64 (340)
39 KOG1027 Serine/threonine prote 90.6 0.078 1.7E-06 55.1 0.1 31 343-374 510-541 (903)
40 KOG0605 NDR and related serine 90.5 0.23 4.9E-06 49.3 3.1 36 340-375 139-175 (550)
41 KOG0694 Serine/threonine prote 90.2 0.27 5.8E-06 50.2 3.4 36 340-375 366-402 (694)
42 PRK04750 ubiB putative ubiquin 90.1 0.28 6.1E-06 49.8 3.6 32 342-374 120-152 (537)
43 PF15102 TMEM154: TMEM154 prot 89.2 0.52 1.1E-05 38.8 3.8 31 260-290 56-86 (146)
44 cd05055 PTKc_PDGFR Catalytic d 89.0 0.31 6.8E-06 45.4 2.8 33 342-374 35-73 (302)
45 PF01102 Glycophorin_A: Glycop 88.1 0.16 3.5E-06 40.7 0.2 29 257-285 61-89 (122)
46 KOG1095 Protein tyrosine kinas 87.7 0.41 8.8E-06 51.7 2.9 29 347-375 697-731 (1025)
47 PHA03209 serine/threonine kina 87.6 0.56 1.2E-05 45.0 3.7 34 340-373 64-98 (357)
48 KOG1024 Receptor-like protein 86.7 0.35 7.6E-06 46.4 1.6 32 334-365 276-307 (563)
49 PHA03211 serine/threonine kina 86.7 0.58 1.3E-05 46.8 3.3 32 342-373 169-201 (461)
50 PTZ00382 Variant-specific surf 86.5 0.84 1.8E-05 35.1 3.3 20 257-276 63-82 (96)
51 KOG1166 Mitotic checkpoint ser 86.3 0.52 1.1E-05 50.8 2.8 32 342-373 698-729 (974)
52 PHA03212 serine/threonine kina 86.3 0.66 1.4E-05 45.3 3.4 33 342-374 92-125 (391)
53 PRK09605 bifunctional UGMP fam 85.8 0.56 1.2E-05 47.9 2.7 31 339-369 330-360 (535)
54 KOG0667 Dual-specificity tyros 85.4 0.79 1.7E-05 46.5 3.4 29 347-375 191-220 (586)
55 KOG1167 Serine/threonine prote 84.1 0.39 8.4E-06 46.2 0.6 35 340-374 34-72 (418)
56 KOG0197 Tyrosine kinases [Sign 82.9 0.66 1.4E-05 45.8 1.6 29 347-375 211-239 (468)
57 KOG0032 Ca2+/calmodulin-depend 81.9 1.2 2.6E-05 43.5 3.0 28 347-374 40-68 (382)
58 KOG0199 ACK and related non-re 81.2 0.96 2.1E-05 46.7 2.1 28 348-375 116-147 (1039)
59 KOG1151 Tousled-like protein k 81.1 0.34 7.3E-06 47.2 -1.1 26 348-373 469-495 (775)
60 KOG1165 Casein kinase (serine/ 80.3 1.2 2.7E-05 42.0 2.3 30 344-373 30-60 (449)
61 COG0661 AarF Predicted unusual 80.2 1.3 2.9E-05 44.7 2.8 32 342-374 126-157 (517)
62 KOG0581 Mitogen-activated prot 79.4 2.2 4.7E-05 40.6 3.7 36 332-374 76-112 (364)
63 PHA03207 serine/threonine kina 79.0 1.8 3.9E-05 42.1 3.2 32 343-374 93-127 (392)
64 KOG0984 Mitogen-activated prot 77.5 1.9 4.2E-05 38.1 2.5 30 346-375 50-80 (282)
65 KOG4257 Focal adhesion tyrosin 77.5 1.5 3.2E-05 44.8 2.1 28 346-373 393-425 (974)
66 KOG1989 ARK protein kinase fam 77.3 2 4.2E-05 45.1 3.0 28 347-374 42-70 (738)
67 PF15345 TMEM51: Transmembrane 76.3 4.9 0.00011 35.8 4.7 35 256-290 53-87 (233)
68 KOG0986 G protein-coupled rece 75.9 0.58 1.2E-05 45.8 -1.2 42 333-374 175-218 (591)
69 KOG4278 Protein tyrosine kinas 75.6 1.4 3E-05 45.0 1.3 29 347-375 272-301 (1157)
70 PF08374 Protocadherin: Protoc 74.9 4.9 0.00011 35.3 4.3 26 257-282 35-60 (221)
71 KOG0592 3-phosphoinositide-dep 72.9 1.8 3.9E-05 43.3 1.3 34 342-375 73-107 (604)
72 PF02439 Adeno_E3_CR2: Adenovi 72.7 2.7 5.9E-05 26.0 1.6 11 263-273 6-16 (38)
73 KOG4721 Serine/threonine prote 69.1 1.6 3.4E-05 44.2 -0.0 27 347-374 129-155 (904)
74 PF01034 Syndecan: Syndecan do 67.6 1.7 3.7E-05 30.4 -0.0 6 280-285 30-35 (64)
75 KOG0607 MAP kinase-interacting 67.4 3.1 6.7E-05 39.2 1.5 38 333-375 74-112 (463)
76 KOG0578 p21-activated serine/t 66.5 4.9 0.00011 40.4 2.8 29 347-375 278-307 (550)
77 KOG0615 Serine/threonine prote 65.5 5.8 0.00013 38.5 3.0 29 347-375 177-206 (475)
78 PF14610 DUF4448: Protein of u 65.0 5.8 0.00013 34.5 2.8 25 259-283 156-180 (189)
79 PF14575 EphA2_TM: Ephrin type 62.7 2.3 4.9E-05 31.1 -0.2 16 332-347 57-72 (75)
80 PF12877 DUF3827: Domain of un 62.5 8.5 0.00018 39.4 3.7 26 74-99 79-104 (684)
81 KOG0200 Fibroblast/platelet-de 62.0 7.1 0.00015 40.6 3.2 28 348-375 302-337 (609)
82 PRK10359 lipopolysaccharide co 61.8 7.9 0.00017 34.9 3.1 33 341-374 30-62 (232)
83 PF08693 SKG6: Transmembrane a 59.3 9 0.0002 24.2 2.1 26 259-284 7-33 (40)
84 PTZ00267 NIMA-related protein 58.3 8.7 0.00019 38.5 3.0 31 344-374 69-101 (478)
85 KOG0983 Mitogen-activated prot 58.0 14 0.00029 34.3 3.8 36 332-374 89-125 (391)
86 PHA03210 serine/threonine kina 57.0 4.7 0.0001 40.8 0.9 24 341-364 147-170 (501)
87 PF06365 CD34_antigen: CD34/Po 56.8 15 0.00033 32.2 3.8 30 261-290 101-130 (202)
88 PF02480 Herpes_gE: Alphaherpe 56.2 3.7 8E-05 40.7 0.0 16 184-201 235-250 (439)
89 PF13908 Shisa: Wnt and FGF in 55.2 13 0.00027 32.1 3.1 18 213-230 36-53 (179)
90 KOG0585 Ca2+/calmodulin-depend 55.1 11 0.00024 37.4 3.0 34 342-375 97-131 (576)
91 KOG1235 Predicted unusual prot 54.9 12 0.00026 38.1 3.3 32 342-374 162-193 (538)
92 PHA03265 envelope glycoprotein 52.5 14 0.0003 35.0 3.0 27 263-289 350-376 (402)
93 KOG4279 Serine/threonine prote 52.2 11 0.00023 39.5 2.5 29 346-374 579-608 (1226)
94 PF01299 Lamp: Lysosome-associ 51.8 4.5 9.9E-05 38.1 -0.2 19 261-279 271-289 (306)
95 PF03302 VSP: Giardia variant- 49.8 17 0.00038 35.6 3.5 22 257-278 364-385 (397)
96 PF02009 Rifin_STEVOR: Rifin/s 47.8 5.6 0.00012 37.2 -0.2 14 49-62 35-48 (299)
97 COG0478 RIO-like serine/threon 47.5 20 0.00043 33.3 3.2 27 347-373 96-122 (304)
98 PF10873 DUF2668: Protein of u 46.6 33 0.00071 28.2 4.0 27 259-285 60-86 (155)
99 PRK01723 3-deoxy-D-manno-octul 43.8 28 0.00061 31.3 3.7 27 347-374 36-63 (239)
100 KOG0610 Putative serine/threon 43.0 16 0.00034 35.7 1.9 28 348-375 83-111 (459)
101 KOG0611 Predicted serine/threo 42.7 10 0.00023 36.9 0.7 27 348-374 59-86 (668)
102 KOG4258 Insulin/growth factor 42.4 12 0.00025 39.7 1.0 20 345-364 997-1016(1025)
103 KOG0616 cAMP-dependent protein 41.9 20 0.00044 33.5 2.4 32 344-375 46-78 (355)
104 KOG0696 Serine/threonine prote 40.3 14 0.0003 36.2 1.1 38 337-375 345-383 (683)
105 PF05454 DAG1: Dystroglycan (D 38.0 11 0.00023 35.2 0.0 10 184-193 100-109 (290)
106 KOG0612 Rho-associated, coiled 37.7 8.9 0.00019 42.1 -0.7 42 334-375 67-109 (1317)
107 PF13095 FTA2: Kinetochore Sim 37.3 34 0.00075 30.2 3.1 31 342-373 37-68 (207)
108 PF09919 DUF2149: Uncharacteri 37.2 26 0.00057 26.6 2.0 20 351-372 71-91 (92)
109 KOG0596 Dual specificity; seri 36.6 12 0.00027 37.8 0.2 28 347-374 366-393 (677)
110 KOG0668 Casein kinase II, alph 35.1 12 0.00026 33.8 -0.2 29 347-375 43-72 (338)
111 KOG0664 Nemo-like MAPK-related 33.9 17 0.00038 33.5 0.7 29 346-374 57-86 (449)
112 PF03229 Alpha_GJ: Alphavirus 32.2 53 0.0012 25.9 3.0 13 261-273 84-96 (126)
113 TIGR01478 STEVOR variant surfa 32.0 23 0.00049 32.7 1.1 12 49-60 58-69 (295)
114 PF07172 GRP: Glycine rich pro 31.4 41 0.00089 25.7 2.3 11 7-17 3-13 (95)
115 PTZ00046 rifin; Provisional 31.2 15 0.00032 35.2 -0.2 25 86-110 124-148 (358)
116 TIGR02976 phageshock_pspB phag 31.1 58 0.0013 23.7 2.9 20 267-286 8-27 (75)
117 PF12259 DUF3609: Protein of u 30.7 51 0.0011 31.8 3.3 17 219-235 221-237 (361)
118 PTZ00370 STEVOR; Provisional 30.7 24 0.00053 32.5 1.1 12 49-60 57-68 (296)
119 KOG4645 MAPKKK (MAP kinase kin 30.0 22 0.00049 39.7 0.8 36 339-374 1232-1268(1509)
120 KOG0586 Serine/threonine prote 28.5 48 0.001 33.9 2.8 35 341-375 55-90 (596)
121 KOG1033 eIF-2alpha kinase PEK/ 28.4 14 0.00031 36.9 -0.9 37 338-374 45-82 (516)
122 TIGR01477 RIFIN variant surfac 27.6 48 0.001 31.7 2.5 25 86-110 127-151 (353)
123 PF04689 S1FA: DNA binding pro 27.4 1.2E+02 0.0025 21.3 3.6 25 261-285 14-38 (69)
124 KOG0690 Serine/threonine prote 26.4 30 0.00064 32.9 0.8 34 342-375 168-202 (516)
125 PF12768 Rax2: Cortical protei 26.1 1E+02 0.0023 28.6 4.4 13 258-270 225-237 (281)
126 PF07213 DAP10: DAP10 membrane 24.5 43 0.00093 24.6 1.2 23 263-285 37-59 (79)
127 PF06667 PspB: Phage shock pro 24.2 90 0.002 22.7 2.8 10 276-285 17-26 (75)
128 KOG0670 U4/U6-associated splic 23.7 56 0.0012 33.2 2.2 25 350-374 440-465 (752)
129 PRK09458 pspB phage shock prot 23.1 1E+02 0.0022 22.5 2.8 18 268-285 9-26 (75)
130 CHL00132 psaF photosystem I su 23.0 1.7E+02 0.0037 25.1 4.6 19 44-62 35-53 (185)
131 KOG1152 Signal transduction se 22.1 82 0.0018 32.5 3.0 31 344-374 563-594 (772)
132 KOG0671 LAMMER dual specificit 21.9 36 0.00079 32.9 0.5 32 344-375 91-123 (415)
133 PF05283 MGC-24: Multi-glycosy 21.5 1.1E+02 0.0023 26.6 3.3 7 199-205 60-66 (186)
134 PRK14051 negative regulator Gr 21.0 97 0.0021 24.1 2.6 26 347-372 28-53 (123)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.89 E-value=2.4e-23 Score=165.08 Aligned_cols=96 Identities=41% Similarity=0.815 Sum_probs=74.9
Q ss_pred cccCC-C-CCcc-CCCcHHHHHHHHHHHHhHhhcc-C--CCccccccc----eEEEEEeecCCCChhhHHHHHHHHHHHH
Q 017211 32 THICL-G-PEND-TAPAEYIASLNSLFDSLSSKAS-S--ESFYNGSSN----GIYSLYLCRGDVSTSTCRICVNNATQQL 101 (375)
Q Consensus 32 ~~~C~-~-~~~~-~~~~~~~~~l~~ll~~l~~~~~-~--~~f~~~~~g----~vygl~qC~~dl~~~~C~~Cl~~a~~~~ 101 (375)
++.|+ + .+++ +.+++|+.+++.||..|...++ . .+|++++.+ ++|||+||++|+++++|+.||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 36788 3 3566 5677899999999999999987 3 479988654 9999999999999999999999999999
Q ss_pred HHhCCCCcceEEEccceEEEEccccc
Q 017211 102 RQRCPSDKRAIIWYDECMLRYSNMNF 127 (375)
Q Consensus 102 ~~~c~~~~~a~i~~~~C~lRy~~~~f 127 (375)
+++|+.++||+||+++|+|||++++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.80 E-value=2.1e-19 Score=142.47 Aligned_cols=88 Identities=33% Similarity=0.533 Sum_probs=71.7
Q ss_pred hHhHHHHHHHHHhhhccCCCCCcceeecccccCCccceEEEEeecCCCChhhhHHHHHHHHHhhhhhcCCCcceEEECCc
Q 017211 149 EQQNYGALGLIFSLVDSVPRTDLMFDTKDGIVDNVQRGYALLQCTRDINSSSCRSCLATLTNESQNCCQIRRGWRILSPS 228 (375)
Q Consensus 149 ~~~~~~~ll~~l~~~aa~~~~~~~fa~~~~~~~~~~~vyglaQC~~dl~~~~C~~Cl~~~~~~~~~~c~~~~gg~~~~~~ 228 (375)
...++..||..|...++.. .+.+|++++.. ++.+++|||+||++||++.||..||+.++..++.+|++..|+++++++
T Consensus 19 f~~~l~~ll~~l~~~a~~~-~~~~f~~~~~~-~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~~ 96 (106)
T PF01657_consen 19 FEQNLNSLLSSLVSNAASS-SSKGFATGSAG-SGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYDS 96 (106)
T ss_dssp HHHHHHHHHHHHHHHGGGT-T-TEEEEEE---ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEESS
T ss_pred HHHHHHHHHHHHHHHHhhc-cccCcEEeecC-CCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECCC
Confidence 4499999999999998533 24799999863 577899999999999999999999999999999999999999999999
Q ss_pred eeEeeccCcc
Q 017211 229 CSLRYEEYGF 238 (375)
Q Consensus 229 C~lry~~~~f 238 (375)
|++||++++|
T Consensus 97 C~lRY~~~~F 106 (106)
T PF01657_consen 97 CFLRYENYPF 106 (106)
T ss_dssp EEEEEESS--
T ss_pred EEEEEECCCC
Confidence 9999999987
No 3
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.97 E-value=4.8e-10 Score=107.88 Aligned_cols=48 Identities=48% Similarity=0.775 Sum_probs=45.3
Q ss_pred ceeeechhhHHHhhccccccceeccCCCcceEEEEcCCCCEEEEEecC
Q 017211 328 EMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSFH 375 (375)
Q Consensus 328 ~~~~~~~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL~ 375 (375)
....|+++||++||++|+++|+||+||||.||||.|+||..||||+++
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~ 108 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLS 108 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEec
Confidence 456799999999999999999999999999999999999999999974
No 4
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.48 E-value=3.1e-07 Score=88.04 Aligned_cols=27 Identities=44% Similarity=0.725 Sum_probs=24.4
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
.++||+|+||.||||.| +++.||||.+
T Consensus 215 ~eli~~Grfg~V~KaqL-~~~~VAVKif 241 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQL-DNRLVAVKIF 241 (534)
T ss_pred HHHhhcCccceeehhhc-cCceeEEEec
Confidence 47899999999999999 5699999986
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.90 E-value=4.9e-05 Score=82.91 Aligned_cols=41 Identities=37% Similarity=0.607 Sum_probs=33.3
Q ss_pred echhhHHHhhccccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 332 IGLTTILAATNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 332 ~~~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
++++++.. .|.++++||+|+||.||||.. .+|..||||+++
T Consensus 683 ~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~ 724 (968)
T PLN00113 683 ITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEIN 724 (968)
T ss_pred hhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEcc
Confidence 45555543 477889999999999999987 678999999873
No 6
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.50 E-value=5.8e-05 Score=76.84 Aligned_cols=44 Identities=30% Similarity=0.483 Sum_probs=32.2
Q ss_pred echhhHHHhhccccc---------cceeccCCCcceEEEEcC--C--CCEEEEEecC
Q 017211 332 IGLTTILAATNNFSN---------ENKLGEGGFGPVYKGKLP--N--GKEVAVKSFH 375 (375)
Q Consensus 332 ~~~~~L~~AT~~Fs~---------~n~iG~G~fG~VYKg~L~--~--G~~VAVKrL~ 375 (375)
++|+|--.|...|.. +.+||.|.||.||+|.|. . ...||||.||
T Consensus 610 ~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK 666 (996)
T KOG0196|consen 610 HTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLK 666 (996)
T ss_pred ccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeec
Confidence 455555555555544 489999999999999982 2 3479999986
No 7
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.32 E-value=0.00012 Score=70.17 Aligned_cols=28 Identities=43% Similarity=0.914 Sum_probs=25.4
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL~ 375 (375)
.+.||+|.||.|++|.. .|..||||.++
T Consensus 216 ~e~IGkGRyGEVwrG~w-rGe~VAVKiF~ 243 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRW-RGEDVAVKIFS 243 (513)
T ss_pred EEEecCccccceeeccc-cCCceEEEEec
Confidence 47899999999999999 78999999863
No 8
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=96.98 E-value=0.00054 Score=68.97 Aligned_cols=36 Identities=28% Similarity=0.608 Sum_probs=30.3
Q ss_pred hhccccccceeccCCCcceEEEEc-----------------CCCCEEEEEecC
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKL-----------------PNGKEVAVKSFH 375 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L-----------------~~G~~VAVKrL~ 375 (375)
..++|...++||+|+||.||||.+ .+++.||||+++
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~ 195 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVN 195 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEec
Confidence 467899999999999999999975 345689999973
No 9
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=96.75 E-value=0.0045 Score=63.98 Aligned_cols=29 Identities=48% Similarity=0.934 Sum_probs=24.2
Q ss_pred ccceeccCCCcceEEEEc-CCCC----EEEEEec
Q 017211 346 NENKLGEGGFGPVYKGKL-PNGK----EVAVKSF 374 (375)
Q Consensus 346 ~~n~iG~G~fG~VYKg~L-~~G~----~VAVKrL 374 (375)
+..+||+|.||+||||+. |+|. +||||.+
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl 733 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVL 733 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEEe
Confidence 468999999999999976 7765 6888876
No 10
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0036 Score=64.68 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=23.9
Q ss_pred cceeccCCCcceEEEEcCC------CCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPN------GKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~------G~~VAVKrL~ 375 (375)
.+.||+|.||.||+|..++ .+.||||.|+
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LK 525 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALK 525 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHhhhc
Confidence 4669999999999999743 3479999885
No 11
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=95.92 E-value=0.0062 Score=62.47 Aligned_cols=35 Identities=40% Similarity=0.624 Sum_probs=30.5
Q ss_pred hhccccccceeccCCCcceEEEEcCC-----CCEEEEEec
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKLPN-----GKEVAVKSF 374 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L~~-----G~~VAVKrL 374 (375)
..++|...++||+|+||.||||.+.+ +..||||++
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~ 169 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKA 169 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEe
Confidence 56778888999999999999999854 689999986
No 12
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=95.85 E-value=0.0046 Score=61.75 Aligned_cols=27 Identities=44% Similarity=0.954 Sum_probs=23.2
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL~ 375 (375)
...||+|+||+||||.+- | .||||.|+
T Consensus 397 ~~rIGsGsFGtV~Rg~wh-G-dVAVK~Ln 423 (678)
T KOG0193|consen 397 GERIGSGSFGTVYRGRWH-G-DVAVKLLN 423 (678)
T ss_pred cceeccccccceeecccc-c-ceEEEEEe
Confidence 478999999999999993 3 49999984
No 13
>PTZ00284 protein kinase; Provisional
Probab=95.31 E-value=0.013 Score=58.73 Aligned_cols=40 Identities=33% Similarity=0.322 Sum_probs=33.0
Q ss_pred hhHHHhhccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 335 TTILAATNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 335 ~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
+++...+++|...++||+|+||.||++.. ..+..||||++
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i 162 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIV 162 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEE
Confidence 44555677888889999999999999986 45788999986
No 14
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=0.013 Score=57.35 Aligned_cols=32 Identities=47% Similarity=0.833 Sum_probs=27.2
Q ss_pred cccccceeccCCCcceEEEE-cCCCCEEEEEec
Q 017211 343 NFSNENKLGEGGFGPVYKGK-LPNGKEVAVKSF 374 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~-L~~G~~VAVKrL 374 (375)
.|-.-++||+|.||.|||+. +..|..||+||+
T Consensus 118 ~feki~kIGeGTyg~VYkAr~~~tgkivALKKv 150 (560)
T KOG0600|consen 118 SFEKIEKIGEGTYGQVYKARDLETGKIVALKKV 150 (560)
T ss_pred HHHHHHHhcCcchhheeEeeecccCcEEEEEEe
Confidence 35556789999999999995 677999999986
No 15
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.47 E-value=0.065 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=10.8
Q ss_pred ceeEEEEEehhHHHHHHHHH
Q 017211 259 KTIVIATVSSVAAVVAALLG 278 (375)
Q Consensus 259 ~~~ii~iv~~~~~~~lvl~~ 278 (375)
..+..++++++++++++++.
T Consensus 11 vaIa~~VvVPV~vI~~vl~~ 30 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGA 30 (40)
T ss_pred EEEEEEEEechHHHHHHHHH
Confidence 34445666666655554433
No 16
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=94.44 E-value=0.02 Score=53.57 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=27.0
Q ss_pred cccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 343 NFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
+|-.-|.|++|.||.||||.- ..+.+||.||++
T Consensus 77 efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~k 110 (419)
T KOG0663|consen 77 EFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLK 110 (419)
T ss_pred HHHHHhhcccCcceeEEEeccCCcceeEEeeecc
Confidence 344569999999999999986 346789999985
No 17
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.012 Score=63.18 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=29.1
Q ss_pred hhccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
-.++|-+-.+||+||||.|||..= -||+.-||||+
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKI 512 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKI 512 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhc
Confidence 445677778999999999999852 28999999997
No 18
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=94.15 E-value=0.038 Score=53.60 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.2
Q ss_pred cccccceeccCCCcceEEEEc------CCCCEEEEEecC
Q 017211 343 NFSNENKLGEGGFGPVYKGKL------PNGKEVAVKSFH 375 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L------~~G~~VAVKrL~ 375 (375)
+|.-.++||+|+||.||++.. ..+..||||+++
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~ 74 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLK 74 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEecc
Confidence 455578999999999999963 345689999874
No 19
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.13 E-value=0.03 Score=56.55 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.0
Q ss_pred hhccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
..+.|...++||+|+||.||++.. .+|+.||||++
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i 65 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVV 65 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEE
Confidence 345566678999999999999964 67899999986
No 20
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=94.06 E-value=0.036 Score=53.48 Aligned_cols=28 Identities=57% Similarity=0.939 Sum_probs=23.8
Q ss_pred cceeccCCCcceEEEEcCCCCE-EEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKE-VAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~-VAVKrL~ 375 (375)
.+.||+|+||+||||.. .|+. ||||++.
T Consensus 46 ~~~iG~G~~g~V~~~~~-~g~~~vavK~~~ 74 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKW-RGTDVVAVKIIS 74 (362)
T ss_pred hhhcccCCceeEEEEEe-CCceeEEEEEec
Confidence 35599999999999999 6666 9999873
No 21
>PTZ00036 glycogen synthase kinase; Provisional
Probab=93.67 E-value=0.052 Score=53.91 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=28.6
Q ss_pred hccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 341 TNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 341 T~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
..+|...++||+|+||.||+|+. ..|+.||||++
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i 99 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKV 99 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEE
Confidence 34577778999999999999987 45889999986
No 22
>smart00090 RIO RIO-like kinase.
Probab=93.51 E-value=0.061 Score=48.77 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred cceeccCCCcceEEEE--cCCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGK--LPNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~--L~~G~~VAVKrL 374 (375)
.+.||+|++|.||+|+ ..+|+.||||.+
T Consensus 33 ~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~ 62 (237)
T smart00090 33 GGCISTGKEANVYHALDFDGSGKERAVKIY 62 (237)
T ss_pred CCeeccCcceeEEEEEecCCCCcEEEEEEE
Confidence 4779999999999998 778999999975
No 23
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=93.41 E-value=0.063 Score=53.29 Aligned_cols=31 Identities=39% Similarity=0.612 Sum_probs=27.3
Q ss_pred cccccceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 343 NFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
.|. ++-||.|++|.||||+|.+|+.||||..
T Consensus 119 ~fd-~~plasaSigQVh~A~l~~G~~VaVKv~ 149 (437)
T TIGR01982 119 EFE-EKPLAAASIAQVHRARLVDGKEVAVKVL 149 (437)
T ss_pred hCC-CcceeeeehhheEEEEecCCCEEEEEee
Confidence 344 4679999999999999999999999975
No 24
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=93.37 E-value=0.065 Score=51.96 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=26.0
Q ss_pred cccccceeccCCCcceEEEEc------CCCCEEEEEecC
Q 017211 343 NFSNENKLGEGGFGPVYKGKL------PNGKEVAVKSFH 375 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L------~~G~~VAVKrL~ 375 (375)
+|...++||+|+||.||+++. .++..||||+++
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~ 77 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLK 77 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEecc
Confidence 455678999999999999873 334689999873
No 25
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.29 E-value=0.1 Score=43.11 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=15.8
Q ss_pred cceeEEEEEehhHHHHHHHHHHHHHh
Q 017211 258 TKTIVIATVSSVAAVVAALLGLWYYL 283 (375)
Q Consensus 258 ~~~~ii~iv~~~~~~~lvl~~~~~~~ 283 (375)
.+.++|++++++++.+++++++++|+
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~ 72 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFI 72 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhhee
Confidence 34578888888766655544444333
No 26
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=92.97 E-value=0.053 Score=52.44 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.9
Q ss_pred HhhccccccceeccCCCcceEEEEcC-CCCEEEEEec
Q 017211 339 AATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSF 374 (375)
Q Consensus 339 ~AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL 374 (375)
...++|...++||+|+||.||++... +|..+|||.+
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~ 76 (370)
T cd05596 40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLL 76 (370)
T ss_pred CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEE
Confidence 34566777899999999999999764 5789999986
No 27
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=92.71 E-value=0.27 Score=49.49 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=26.3
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL~ 375 (375)
.++||+|-||.|--..+.++..||||.|+
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr 571 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVKILR 571 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEeecC
Confidence 47899999999999999778999999984
No 28
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=92.61 E-value=0.087 Score=51.71 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=25.9
Q ss_pred cccccceeccCCCcceEEEEcC------CCCEEEEEecC
Q 017211 343 NFSNENKLGEGGFGPVYKGKLP------NGKEVAVKSFH 375 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L~------~G~~VAVKrL~ 375 (375)
++....+||+|+||.||++... .+..||||+++
T Consensus 38 ~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~ 76 (401)
T cd05107 38 NLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLK 76 (401)
T ss_pred HeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecC
Confidence 3444688999999999999863 24589999874
No 29
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=92.55 E-value=0.036 Score=44.57 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=26.6
Q ss_pred ccccceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 344 FSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
|. .+-|+.|+.|-||+|+|.+|+.||||..
T Consensus 14 fd-~~PlasASiaQVh~a~l~~g~~VaVKV~ 43 (119)
T PF03109_consen 14 FD-PEPLASASIAQVHRARLKDGEEVAVKVQ 43 (119)
T ss_pred CC-cchhhheehhhheeeeecccchhhhhhc
Confidence 44 4779999999999999999999999975
No 30
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=92.53 E-value=0.089 Score=50.38 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=24.6
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
.++||+|+||.||++.. .+|+.||||.+
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~ 107 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVI 107 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 47899999999999986 46899999986
No 31
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=92.33 E-value=0.12 Score=50.66 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=25.1
Q ss_pred cccccceeccCCCcceEEEEcC------CCCEEEEEecC
Q 017211 343 NFSNENKLGEGGFGPVYKGKLP------NGKEVAVKSFH 375 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L~------~G~~VAVKrL~ 375 (375)
.|...++||+|+||.||+|+.. .+..||||+++
T Consensus 38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~ 76 (400)
T cd05105 38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLK 76 (400)
T ss_pred ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecC
Confidence 3444688999999999999852 13469999873
No 32
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=92.33 E-value=0.093 Score=50.79 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=33.1
Q ss_pred hhhHHHhhccccccceeccCCCcceEEEEcC-CCCEEEEEec
Q 017211 334 LTTILAATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSF 374 (375)
Q Consensus 334 ~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL 374 (375)
+.++....++|...++||+|+||.||++... .++.+|+|.+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i 76 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLL 76 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEE
Confidence 3445556677888899999999999999874 4788999975
No 33
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=91.92 E-value=0.11 Score=50.27 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=31.1
Q ss_pred hHHHhhccccccceeccCCCcceEEEEcC-CCCEEEEEec
Q 017211 336 TILAATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSF 374 (375)
Q Consensus 336 ~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL 374 (375)
++....++|...++||+|+||.||++... +++.+|+|.+
T Consensus 37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~ 76 (370)
T cd05621 37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLL 76 (370)
T ss_pred hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEE
Confidence 34445567777889999999999999874 4788999976
No 34
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=91.86 E-value=0.098 Score=51.90 Aligned_cols=29 Identities=48% Similarity=0.858 Sum_probs=25.3
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
+++||.|-||+||-|.- ..|+.||||.++
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvId 598 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVID 598 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeee
Confidence 57999999999999976 569999999864
No 35
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=91.46 E-value=0.057 Score=49.09 Aligned_cols=29 Identities=41% Similarity=0.634 Sum_probs=24.8
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
...||.|.||+|+|=.. +.|+++||||+.
T Consensus 69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr 98 (361)
T KOG1006|consen 69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIR 98 (361)
T ss_pred HHHhcCCcchhhhhhhcCccCcEEEEEEee
Confidence 35699999999999765 779999999973
No 36
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=91.15 E-value=0.14 Score=50.85 Aligned_cols=29 Identities=59% Similarity=0.859 Sum_probs=23.0
Q ss_pred cceeccCCCcceEEEEcCC--C--CE-EEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPN--G--KE-VAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~--G--~~-VAVKrL~ 375 (375)
..+||+|.||.||+|.|.- + .. ||||..+
T Consensus 162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k 195 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTK 195 (474)
T ss_pred cceeecccccEEEEEEEEecCCceeeeeEEEeec
Confidence 3889999999999999843 3 23 8999763
No 37
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=90.69 E-value=0.037 Score=51.00 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=24.5
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
-.+||+|+||+|||++- +.|++||||++
T Consensus 38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~V 66 (502)
T KOG0574|consen 38 VGKLGEGSYGSVHKAIHRESGHVLAIKKV 66 (502)
T ss_pred HHHhcCCcchHHHHHHHhccCcEEEEEec
Confidence 37899999999999976 56999999975
No 38
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=90.62 E-value=0.18 Score=48.15 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=25.7
Q ss_pred cccccceeccCCCcceEEEEcCC--CCEEEEEec
Q 017211 343 NFSNENKLGEGGFGPVYKGKLPN--GKEVAVKSF 374 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L~~--G~~VAVKrL 374 (375)
+|....+||+|+||.||++...+ +..||||++
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~ 64 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRF 64 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEE
Confidence 35556889999999999998643 358999976
No 39
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=90.57 E-value=0.078 Score=55.11 Aligned_cols=31 Identities=45% Similarity=0.729 Sum_probs=26.8
Q ss_pred cccccceeccCCCcc-eEEEEcCCCCEEEEEec
Q 017211 343 NFSNENKLGEGGFGP-VYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~-VYKg~L~~G~~VAVKrL 374 (375)
-|+.++++|.|.-|+ ||+|++ +|++||||||
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrl 541 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRL 541 (903)
T ss_pred eeccHHHcccCCCCcEEEEEee-CCceehHHHH
Confidence 477788999998876 699999 8899999997
No 40
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=90.46 E-value=0.23 Score=49.30 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=30.1
Q ss_pred hhccccccceeccCCCcceEEEEcC-CCCEEEEEecC
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSFH 375 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL~ 375 (375)
..++|..-.+||+|+||.||-+.-. .|...|+|+|+
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~Lk 175 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILK 175 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeeccc
Confidence 4567777789999999999998764 48999999984
No 41
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.17 E-value=0.27 Score=50.18 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=29.9
Q ss_pred hhccccccceeccCCCcceEEEEcC-CCCEEEEEecC
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSFH 375 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL~ 375 (375)
.-++|.-..+||+|+||.|+.+.+. ++...|||.|+
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LK 402 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLK 402 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEee
Confidence 3456777899999999999999984 46788999885
No 42
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=90.12 E-value=0.28 Score=49.84 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.1
Q ss_pred ccccccceeccCCCcceEEEEcCC-CCEEEEEec
Q 017211 342 NNFSNENKLGEGGFGPVYKGKLPN-GKEVAVKSF 374 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL 374 (375)
.+|.+ +-||.|++|.||++++.+ |+.||||.+
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~ 152 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVL 152 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEe
Confidence 34665 789999999999999988 999999976
No 43
>PF15102 TMEM154: TMEM154 protein family
Probab=89.25 E-value=0.52 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=14.5
Q ss_pred eeEEEEEehhHHHHHHHHHHHHHhhhhhhcc
Q 017211 260 TIVIATVSSVAAVVAALLGLWYYLFRCRRKS 290 (375)
Q Consensus 260 ~~ii~iv~~~~~~~lvl~~~~~~~~~~r~~~ 290 (375)
-.++.|+++.++++++++++++++.++|||+
T Consensus 56 efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 56 EFILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 3466677775544444443333333333333
No 44
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=88.97 E-value=0.31 Score=45.42 Aligned_cols=33 Identities=39% Similarity=0.515 Sum_probs=26.4
Q ss_pred ccccccceeccCCCcceEEEEc------CCCCEEEEEec
Q 017211 342 NNFSNENKLGEGGFGPVYKGKL------PNGKEVAVKSF 374 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L------~~G~~VAVKrL 374 (375)
++|...++||+|+||.||++.. ..+..||||++
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~ 73 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKML 73 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEec
Confidence 4577789999999999999964 23457999976
No 45
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.09 E-value=0.16 Score=40.68 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=13.8
Q ss_pred CcceeEEEEEehhHHHHHHHHHHHHHhhh
Q 017211 257 NTKTIVIATVSSVAAVVAALLGLWYYLFR 285 (375)
Q Consensus 257 ~~~~~ii~iv~~~~~~~lvl~~~~~~~~~ 285 (375)
.....+++|++++++.++.++++++|+.|
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHHHH
Confidence 33344556666665555444444443434
No 46
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=87.66 E-value=0.41 Score=51.74 Aligned_cols=29 Identities=48% Similarity=0.863 Sum_probs=23.5
Q ss_pred cceeccCCCcceEEEEcCC--CC----EEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPN--GK----EVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~--G~----~VAVKrL~ 375 (375)
...||+|.||.||+|.+.+ |. .||||.|+
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~ 731 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLK 731 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEecc
Confidence 4789999999999999843 43 38999874
No 47
>PHA03209 serine/threonine kinase US3; Provisional
Probab=87.64 E-value=0.56 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.2
Q ss_pred hhccccccceeccCCCcceEEEEcC-CCCEEEEEe
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKS 373 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKr 373 (375)
...+|.....||+|+||.||++... .+..||+|.
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~ 98 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKI 98 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEe
Confidence 3456888899999999999999875 367899985
No 48
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=86.73 E-value=0.35 Score=46.43 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=24.1
Q ss_pred hhhHHHhhccccccceeccCCCcceEEEEcCC
Q 017211 334 LTTILAATNNFSNENKLGEGGFGPVYKGKLPN 365 (375)
Q Consensus 334 ~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~~ 365 (375)
..+|...-+.|....++-+|.||.||+|++.+
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~e 307 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWRE 307 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeecc
Confidence 34555555567777889999999999997744
No 49
>PHA03211 serine/threonine kinase US3; Provisional
Probab=86.72 E-value=0.58 Score=46.85 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.2
Q ss_pred ccccccceeccCCCcceEEEEcCC-CCEEEEEe
Q 017211 342 NNFSNENKLGEGGFGPVYKGKLPN-GKEVAVKS 373 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKr 373 (375)
.+|....+||+|+||.||++..++ ++.||||+
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~ 201 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKA 201 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEec
Confidence 357777899999999999998865 67899995
No 50
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=86.52 E-value=0.84 Score=35.08 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=10.7
Q ss_pred CcceeEEEEEehhHHHHHHH
Q 017211 257 NTKTIVIATVSSVAAVVAAL 276 (375)
Q Consensus 257 ~~~~~ii~iv~~~~~~~lvl 276 (375)
.+...+++|++++++++.++
T Consensus 63 ls~gaiagi~vg~~~~v~~l 82 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGL 82 (96)
T ss_pred cccccEEEEEeehhhHHHHH
Confidence 33455666666655444333
No 51
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=86.28 E-value=0.52 Score=50.84 Aligned_cols=32 Identities=41% Similarity=0.724 Sum_probs=28.1
Q ss_pred ccccccceeccCCCcceEEEEcCCCCEEEEEe
Q 017211 342 NNFSNENKLGEGGFGPVYKGKLPNGKEVAVKS 373 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKr 373 (375)
..|.-+..||+|+||.||+|.-.+|+.||+|.
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~ 729 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVATHSNGKLVALKV 729 (974)
T ss_pred eeEEEEeeeccccceEEEEeecCCCcEEEEEe
Confidence 44666788999999999999998999999995
No 52
>PHA03212 serine/threonine kinase US3; Provisional
Probab=86.28 E-value=0.66 Score=45.30 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=27.4
Q ss_pred ccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 342 NNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
++|...++||+|+||.||++.- ..++.||||+.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~ 125 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAG 125 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEech
Confidence 4577778999999999999975 45789999964
No 53
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=85.82 E-value=0.56 Score=47.90 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.1
Q ss_pred HhhccccccceeccCCCcceEEEEcCCCCEE
Q 017211 339 AATNNFSNENKLGEGGFGPVYKGKLPNGKEV 369 (375)
Q Consensus 339 ~AT~~Fs~~n~iG~G~fG~VYKg~L~~G~~V 369 (375)
.....+...++||+|+||.||||.+.+...+
T Consensus 330 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v 360 (535)
T PRK09605 330 EVKRRKIPDHLIGKGAEADIKKGEYLGRDAV 360 (535)
T ss_pred ccccccCccceeccCCcEEEEEEeecCccce
Confidence 3344456679999999999999998655433
No 54
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=85.41 E-value=0.79 Score=46.46 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=24.9
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
.++||+|.||-|-|+.= ..++.||||.++
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiK 220 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIK 220 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeec
Confidence 47899999999999964 558999999875
No 55
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=84.13 E-value=0.39 Score=46.24 Aligned_cols=35 Identities=37% Similarity=0.584 Sum_probs=28.5
Q ss_pred hhccccccceeccCCCcceEEEEcCC----CCEEEEEec
Q 017211 340 ATNNFSNENKLGEGGFGPVYKGKLPN----GKEVAVKSF 374 (375)
Q Consensus 340 AT~~Fs~~n~iG~G~fG~VYKg~L~~----G~~VAVKrL 374 (375)
..+.|...++||+|.|++|||+++-. ...||+|.+
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i 72 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAI 72 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeec
Confidence 33456778999999999999999844 568999976
No 56
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=82.87 E-value=0.66 Score=45.82 Aligned_cols=29 Identities=41% Similarity=0.684 Sum_probs=24.8
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL~ 375 (375)
.+.||+|-||.|+.|.+.+...||||.++
T Consensus 211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik 239 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWNGSTKVAVKTIK 239 (468)
T ss_pred HHHhcCCccceEEEEEEcCCCcccceEEe
Confidence 37799999999999999655689999764
No 57
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=81.91 E-value=1.2 Score=43.45 Aligned_cols=28 Identities=46% Similarity=0.700 Sum_probs=25.0
Q ss_pred cceeccCCCcceEEEEcCC-CCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKLPN-GKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~-G~~VAVKrL 374 (375)
..+||+|.||.||+.+-.. |..+|+|.+
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i 68 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKSTGKEVACKVI 68 (382)
T ss_pred hhhhCCCCceEEEEEEecCCCceeEEEEe
Confidence 3779999999999998866 999999986
No 58
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=81.15 E-value=0.96 Score=46.73 Aligned_cols=28 Identities=54% Similarity=0.905 Sum_probs=23.5
Q ss_pred ceeccCCCcceEEEEc--CCCC--EEEEEecC
Q 017211 348 NKLGEGGFGPVYKGKL--PNGK--EVAVKSFH 375 (375)
Q Consensus 348 n~iG~G~fG~VYKg~L--~~G~--~VAVKrL~ 375 (375)
++||+|.||.|.+|.+ ++|. .||||.|.
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr 147 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLR 147 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEecc
Confidence 7899999999999987 5565 58999873
No 59
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=81.12 E-value=0.34 Score=47.22 Aligned_cols=26 Identities=50% Similarity=0.772 Sum_probs=23.0
Q ss_pred ceeccCCCcceEEE-EcCCCCEEEEEe
Q 017211 348 NKLGEGGFGPVYKG-KLPNGKEVAVKS 373 (375)
Q Consensus 348 n~iG~G~fG~VYKg-~L~~G~~VAVKr 373 (375)
++||+|||..|||+ .|...+-||||.
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKI 495 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKI 495 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEee
Confidence 78999999999999 466778999996
No 60
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=80.30 E-value=1.2 Score=41.98 Aligned_cols=30 Identities=43% Similarity=0.749 Sum_probs=25.2
Q ss_pred ccccceeccCCCcceEEEE-cCCCCEEEEEe
Q 017211 344 FSNENKLGEGGFGPVYKGK-LPNGKEVAVKS 373 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~-L~~G~~VAVKr 373 (375)
|.-..+||+|.||..+.|. |-+++.||||-
T Consensus 30 yrVGkKIGeGsFG~lf~G~Nl~nne~VAIKf 60 (449)
T KOG1165|consen 30 YRVGKKIGEGSFGVLFLGKNLYNNEPVAIKF 60 (449)
T ss_pred ceeccccccCcceeeecccccccCceEEEEe
Confidence 4446899999999999994 56899999993
No 61
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=80.23 E-value=1.3 Score=44.74 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.6
Q ss_pred ccccccceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 342 NNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
..|+ .+-|+.++.|-||+|+|++|+.||||..
T Consensus 126 ~eF~-~~PiAsASIaQVH~A~L~sG~~VAVKVq 157 (517)
T COG0661 126 SEFE-PEPIASASIAQVHRAVLKSGEEVAVKVQ 157 (517)
T ss_pred HHcC-CCchhhhhHhhheeEEecCCCEEEEEec
Confidence 3465 3678999999999999999999999975
No 62
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=79.43 E-value=2.2 Score=40.62 Aligned_cols=36 Identities=39% Similarity=0.537 Sum_probs=29.1
Q ss_pred echhhHHHhhccccccceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 332 IGLTTILAATNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 332 ~~~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
+++.||+. -+.||+|..|+|||... +.+...|.|.+
T Consensus 76 i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I 112 (364)
T KOG0581|consen 76 ISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKVI 112 (364)
T ss_pred cCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEee
Confidence 55666665 37899999999999987 56788999976
No 63
>PHA03207 serine/threonine kinase US3; Provisional
Probab=79.01 E-value=1.8 Score=42.14 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=25.7
Q ss_pred cccccceeccCCCcceEEEEcC---CCCEEEEEec
Q 017211 343 NFSNENKLGEGGFGPVYKGKLP---NGKEVAVKSF 374 (375)
Q Consensus 343 ~Fs~~n~iG~G~fG~VYKg~L~---~G~~VAVKrL 374 (375)
.|....+||+|+||.||++... .+..||||.+
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~ 127 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAV 127 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEec
Confidence 4666788999999999999753 3567999976
No 64
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=77.48 E-value=1.9 Score=38.09 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=24.4
Q ss_pred ccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 346 NENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 346 ~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
....||+|++|.|=|=.+ ++|+.+||||+.
T Consensus 50 ~i~elGrGayG~vekmrh~~sg~imAvKri~ 80 (282)
T KOG0984|consen 50 GIEELGRGAYGVVEKMRHIQSGTIMAVKRIR 80 (282)
T ss_pred hhhhhcCCccchhhheeeccCCeEEEEeeeh
Confidence 346799999999977654 789999999973
No 65
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=77.47 E-value=1.5 Score=44.80 Aligned_cols=28 Identities=50% Similarity=0.847 Sum_probs=21.9
Q ss_pred ccceeccCCCcceEEEEcCC---CC--EEEEEe
Q 017211 346 NENKLGEGGFGPVYKGKLPN---GK--EVAVKS 373 (375)
Q Consensus 346 ~~n~iG~G~fG~VYKg~L~~---G~--~VAVKr 373 (375)
...+||+|-||.||+|+..+ |. .||||.
T Consensus 393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKt 425 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKT 425 (974)
T ss_pred HHHhhcCCcccceeeeEecccccCcceeeeeeh
Confidence 35889999999999998733 33 578885
No 66
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=77.29 E-value=2 Score=45.07 Aligned_cols=28 Identities=43% Similarity=0.668 Sum_probs=25.7
Q ss_pred cceeccCCCcceEEEEcCCC-CEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKLPNG-KEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G-~~VAVKrL 374 (375)
+++|-+|||+.||-+...++ ..+|+||+
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm 70 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALKRM 70 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeeeee
Confidence 68999999999999998776 99999997
No 67
>PF15345 TMEM51: Transmembrane protein 51
Probab=76.30 E-value=4.9 Score=35.75 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=20.2
Q ss_pred CCcceeEEEEEehhHHHHHHHHHHHHHhhhhhhcc
Q 017211 256 KNTKTIVIATVSSVAAVVAALLGLWYYLFRCRRKS 290 (375)
Q Consensus 256 ~~~~~~ii~iv~~~~~~~lvl~~~~~~~~~~r~~~ 290 (375)
.+++...++.++.+++++++++.+|+-++.+||++
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666555566666667777665544443
No 68
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=75.87 E-value=0.58 Score=45.82 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=29.6
Q ss_pred chhhHHHhh-ccccccceeccCCCcceEEEEcCC-CCEEEEEec
Q 017211 333 GLTTILAAT-NNFSNENKLGEGGFGPVYKGKLPN-GKEVAVKSF 374 (375)
Q Consensus 333 ~~~~L~~AT-~~Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL 374 (375)
.+-|+.-.| +.|+.-.+||+||||.||-....+ |..-|-|+|
T Consensus 175 K~lE~qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL 218 (591)
T KOG0986|consen 175 KWLELQPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKL 218 (591)
T ss_pred HHHHhhhccccceeeeEEEecccccceeEEEEecchhhHHHHHH
Confidence 344444444 458999999999999999776633 666666655
No 69
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=75.62 E-value=1.4 Score=44.98 Aligned_cols=29 Identities=41% Similarity=0.732 Sum_probs=25.4
Q ss_pred cceeccCCCcceEEEEcCC-CCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKLPN-GKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~-G~~VAVKrL~ 375 (375)
.++||-|-||.||.|++.. ...||||.|+
T Consensus 272 khKLGGGQYGeVYeGvWKkyslTvAVKtLK 301 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 301 (1157)
T ss_pred eeccCCCcccceeeeeeeccceeeehhhhh
Confidence 6999999999999999954 4689999875
No 70
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=74.89 E-value=4.9 Score=35.32 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=15.1
Q ss_pred CcceeEEEEEehhHHHHHHHHHHHHH
Q 017211 257 NTKTIVIATVSSVAAVVAALLGLWYY 282 (375)
Q Consensus 257 ~~~~~ii~iv~~~~~~~lvl~~~~~~ 282 (375)
....++++|+.+++.++|+|++..++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 34556677777766666555444443
No 71
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=72.92 E-value=1.8 Score=43.35 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=27.8
Q ss_pred ccccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 342 NNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
++|.-...||+|+|.+||+++= ..+.+.|||.|+
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred hhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 4455578899999999999964 558899999874
No 72
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=72.71 E-value=2.7 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=4.7
Q ss_pred EEEEehhHHHH
Q 017211 263 IATVSSVAAVV 273 (375)
Q Consensus 263 i~iv~~~~~~~ 273 (375)
+++++++++.+
T Consensus 6 IaIIv~V~vg~ 16 (38)
T PF02439_consen 6 IAIIVAVVVGM 16 (38)
T ss_pred hhHHHHHHHHH
Confidence 34444444333
No 73
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=69.06 E-value=1.6 Score=44.19 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=24.1
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
-+-||.|.-|.||.|.| .+.+||||++
T Consensus 129 LeWlGSGaQGAVF~Grl-~netVAVKKV 155 (904)
T KOG4721|consen 129 LEWLGSGAQGAVFLGRL-HNETVAVKKV 155 (904)
T ss_pred hhhhccCcccceeeeec-cCceehhHHH
Confidence 46799999999999999 6688999986
No 74
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=67.65 E-value=1.7 Score=30.36 Aligned_cols=6 Identities=17% Similarity=0.944 Sum_probs=0.0
Q ss_pred HHHhhh
Q 017211 280 WYYLFR 285 (375)
Q Consensus 280 ~~~~~~ 285 (375)
.++++|
T Consensus 30 lf~iyR 35 (64)
T PF01034_consen 30 LFLIYR 35 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333334
No 75
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=67.36 E-value=3.1 Score=39.18 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=30.6
Q ss_pred chhhHHHhhccccccceeccCCCcceEEE-EcCCCCEEEEEecC
Q 017211 333 GLTTILAATNNFSNENKLGEGGFGPVYKG-KLPNGKEVAVKSFH 375 (375)
Q Consensus 333 ~~~~L~~AT~~Fs~~n~iG~G~fG~VYKg-~L~~G~~VAVKrL~ 375 (375)
+|+|+-+-| +++||+|.++.|--. .+..|.+.|||.++
T Consensus 74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiid 112 (463)
T KOG0607|consen 74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIID 112 (463)
T ss_pred hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhh
Confidence 467777777 588999999999765 35789999999763
No 76
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.52 E-value=4.9 Score=40.40 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=24.7
Q ss_pred cceeccCCCcceEEEE-cCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGK-LPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~-L~~G~~VAVKrL~ 375 (375)
-.+||+|..|.||-+. ...+++||||++.
T Consensus 278 ~~kigqgaSG~vy~A~~~~~~~~VaiK~m~ 307 (550)
T KOG0578|consen 278 FKKIGQGATGGVYVARKISTKQEVAIKRMD 307 (550)
T ss_pred hhhhccccccceeeeeeccCCceEEEEEEE
Confidence 4789999999999884 5678999999974
No 77
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=65.46 E-value=5.8 Score=38.55 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=24.3
Q ss_pred cceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
.+.||+|+||.|-+|.= ..|+.||||.++
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~ 206 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIIN 206 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeee
Confidence 37799999999998864 569999999864
No 78
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=65.02 E-value=5.8 Score=34.49 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=15.9
Q ss_pred ceeEEEEEehhHHHHHHHHHHHHHh
Q 017211 259 KTIVIATVSSVAAVVAALLGLWYYL 283 (375)
Q Consensus 259 ~~~ii~iv~~~~~~~lvl~~~~~~~ 283 (375)
....++|++++++++++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhe
Confidence 4556778888877766655544444
No 79
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=62.75 E-value=2.3 Score=31.08 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=12.8
Q ss_pred echhhHHHhhcccccc
Q 017211 332 IGLTTILAATNNFSNE 347 (375)
Q Consensus 332 ~~~~~L~~AT~~Fs~~ 347 (375)
++|+|-..|-..|..+
T Consensus 57 ~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 57 HTYEDPNQAVREFAKE 72 (75)
T ss_dssp GGSSSHHHHHHHCSSB
T ss_pred ccccCHHHHHHHHHhh
Confidence 5789999998888754
No 80
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=62.46 E-value=8.5 Score=39.38 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=18.4
Q ss_pred eEEEEEeecCCCChhhHHHHHHHHHH
Q 017211 74 GIYSLYLCRGDVSTSTCRICVNNATQ 99 (375)
Q Consensus 74 ~vygl~qC~~dl~~~~C~~Cl~~a~~ 99 (375)
.+|+...=++-|+.++-..=|.....
T Consensus 79 i~~aVr~~~~~LnGt~~S~lL~~Ls~ 104 (684)
T PF12877_consen 79 ITYAVRNGSGFLNGTEVSELLRQLSA 104 (684)
T ss_pred EEEEEecCceeeccHHHHHHHHhhhh
Confidence 68999888888888876555544433
No 81
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=61.97 E-value=7.1 Score=40.58 Aligned_cols=28 Identities=46% Similarity=0.536 Sum_probs=22.9
Q ss_pred ceeccCCCcceEEEEcC----C----CCEEEEEecC
Q 017211 348 NKLGEGGFGPVYKGKLP----N----GKEVAVKSFH 375 (375)
Q Consensus 348 n~iG~G~fG~VYKg~L~----~----G~~VAVKrL~ 375 (375)
+.||+|.||.|+||.+. . ...||||+++
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k 337 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLK 337 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEecc
Confidence 48999999999999862 1 3579999874
No 82
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=61.79 E-value=7.9 Score=34.89 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=27.6
Q ss_pred hccccccceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 341 TNNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 341 T~~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
.+.+...+++|.|+||.||...- ++..+|||.+
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf 62 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVF 62 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEe
Confidence 35688889999999999998655 5778999976
No 83
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=59.27 E-value=9 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=15.5
Q ss_pred ceeEEEEEehhHHHHHHHH-HHHHHhh
Q 017211 259 KTIVIATVSSVAAVVAALL-GLWYYLF 284 (375)
Q Consensus 259 ~~~ii~iv~~~~~~~lvl~-~~~~~~~ 284 (375)
.....+|.+++++-+.+++ ++.++++
T Consensus 7 ~~~~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred CCceEEEEEEEEechHHHHHHHHHHhh
Confidence 4566777777766555554 4556555
No 84
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=58.29 E-value=8.7 Score=38.54 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=23.5
Q ss_pred ccccceeccCCCcceEEEEcC-C-CCEEEEEec
Q 017211 344 FSNENKLGEGGFGPVYKGKLP-N-GKEVAVKSF 374 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~L~-~-G~~VAVKrL 374 (375)
|...++||+|+||.||++.-. + +..||+|.+
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~ 101 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFV 101 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEc
Confidence 334588999999999999653 3 567888864
No 85
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=57.97 E-value=14 Score=34.31 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=28.3
Q ss_pred echhhHHHhhccccccceeccCCCcceEEEEcC-CCCEEEEEec
Q 017211 332 IGLTTILAATNNFSNENKLGEGGFGPVYKGKLP-NGKEVAVKSF 374 (375)
Q Consensus 332 ~~~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL 374 (375)
-++.||+.. ..||.|..|.|.|.... .|..+|||.|
T Consensus 89 ~dindl~~l-------~dlGsGtcG~V~k~~~rs~~~iiAVK~M 125 (391)
T KOG0983|consen 89 ADINDLENL-------GDLGSGTCGQVWKMRFRSTGHIIAVKQM 125 (391)
T ss_pred cChHHhhhH-------HhhcCCCccceEEEEEcccceEEEEEee
Confidence 456666654 45899999999999874 4899999976
No 86
>PHA03210 serine/threonine kinase US3; Provisional
Probab=56.95 E-value=4.7 Score=40.77 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.6
Q ss_pred hccccccceeccCCCcceEEEEcC
Q 017211 341 TNNFSNENKLGEGGFGPVYKGKLP 364 (375)
Q Consensus 341 T~~Fs~~n~iG~G~fG~VYKg~L~ 364 (375)
.+.|...++||+|+||.||++.+.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 356777789999999999998763
No 87
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=56.75 E-value=15 Score=32.20 Aligned_cols=30 Identities=30% Similarity=0.157 Sum_probs=12.3
Q ss_pred eEEEEEehhHHHHHHHHHHHHHhhhhhhcc
Q 017211 261 IVIATVSSVAAVVAALLGLWYYLFRCRRKS 290 (375)
Q Consensus 261 ~ii~iv~~~~~~~lvl~~~~~~~~~~r~~~ 290 (375)
.+|++++.+.++++++++...|++++||..
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 333333333233333444444455554443
No 88
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=56.23 E-value=3.7 Score=40.70 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=11.0
Q ss_pred cceEEEEeecCCCChhhh
Q 017211 184 QRGYALLQCTRDINSSSC 201 (375)
Q Consensus 184 ~~vyglaQC~~dl~~~~C 201 (375)
.++|. .|.++-.+.+|
T Consensus 235 ~~~y~--~C~~~~~~~~C 250 (439)
T PF02480_consen 235 SRRYA--NCSPSGWPRRC 250 (439)
T ss_dssp EEEEE--EEBTTC-TTTT
T ss_pred HHhhc--CCCCCCCcCCC
Confidence 35555 99998766777
No 89
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=55.19 E-value=13 Score=32.05 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=6.9
Q ss_pred hhhcCCCcceEEECCcee
Q 017211 213 QNCCQIRRGWRILSPSCS 230 (375)
Q Consensus 213 ~~~c~~~~gg~~~~~~C~ 230 (375)
.-||...+..+..-.+|.
T Consensus 36 ryCC~~~~~~~~~q~~C~ 53 (179)
T PF13908_consen 36 RYCCSDLKRARLDQGSCD 53 (179)
T ss_pred cchhhhhhhceecccccc
Confidence 335543122233333454
No 90
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=55.07 E-value=11 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.0
Q ss_pred ccccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 342 NNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
|.|.....||+|.||.|-++.- .+|..+|||.|.
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~ 131 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILP 131 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeec
Confidence 4455567799999999988853 568999999873
No 91
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=54.87 E-value=12 Score=38.12 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=26.8
Q ss_pred ccccccceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 342 NNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
..|+ +.-|+.-+.|-|||++|++|+.||||.-
T Consensus 162 ~~f~-~~piaaASlaQVhrA~L~~G~~VaVKVQ 193 (538)
T KOG1235|consen 162 SEFD-EEPIAAASLAQVHRARLKNGEDVAVKVQ 193 (538)
T ss_pred HhcC-cchhhhcchhheEEEEecCCCEEEEEec
Confidence 3455 3568999999999999999999999963
No 92
>PHA03265 envelope glycoprotein D; Provisional
Probab=52.48 E-value=14 Score=34.99 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=11.3
Q ss_pred EEEEehhHHHHHHHHHHHHHhhhhhhc
Q 017211 263 IATVSSVAAVVAALLGLWYYLFRCRRK 289 (375)
Q Consensus 263 i~iv~~~~~~~lvl~~~~~~~~~~r~~ 289 (375)
++++++++++-++++..+++++|+|||
T Consensus 350 ~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 350 VGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred cceEEccchhhhhhhhHHHHHHhhhhh
Confidence 334444333333344444444554444
No 93
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.23 E-value=11 Score=39.49 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=22.7
Q ss_pred ccceeccCCCcceEEEEcCC-CCEEEEEec
Q 017211 346 NENKLGEGGFGPVYKGKLPN-GKEVAVKSF 374 (375)
Q Consensus 346 ~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL 374 (375)
+.-+||+|.||+||-|+-.+ ...||||-+
T Consensus 579 ervVLGKGTYG~VYA~RD~~tqvrIaIKEI 608 (1226)
T KOG4279|consen 579 ERVVLGKGTYGTVYAARDMDTQVRIAIKEI 608 (1226)
T ss_pred ceEEeecCceeEEEeeccccceeEEEeeec
Confidence 35689999999999997533 456899964
No 94
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.77 E-value=4.5 Score=38.09 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=9.5
Q ss_pred eEEEEEehhHHHHHHHHHH
Q 017211 261 IVIATVSSVAAVVAALLGL 279 (375)
Q Consensus 261 ~ii~iv~~~~~~~lvl~~~ 279 (375)
.++.|++|+++++++++++
T Consensus 271 ~~vPIaVG~~La~lvlivL 289 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVL 289 (306)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4555656655444444443
No 95
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=49.84 E-value=17 Score=35.55 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=11.3
Q ss_pred CcceeEEEEEehhHHHHHHHHH
Q 017211 257 NTKTIVIATVSSVAAVVAALLG 278 (375)
Q Consensus 257 ~~~~~ii~iv~~~~~~~lvl~~ 278 (375)
.+...|++|.|++++++--|+.
T Consensus 364 LstgaIaGIsvavvvvVgglvG 385 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVG 385 (397)
T ss_pred ccccceeeeeehhHHHHHHHHH
Confidence 3455566666665544433333
No 96
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.79 E-value=5.6 Score=37.23 Aligned_cols=14 Identities=7% Similarity=0.423 Sum_probs=7.8
Q ss_pred HHHHHHHHHhHhhc
Q 017211 49 ASLNSLFDSLSSKA 62 (375)
Q Consensus 49 ~~l~~ll~~l~~~~ 62 (375)
.-+..+++..-.++
T Consensus 35 PeMK~Vme~F~rqT 48 (299)
T PF02009_consen 35 PEMKSVMENFDRQT 48 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666555444
No 97
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=47.53 E-value=20 Score=33.27 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=25.1
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEe
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKS 373 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKr 373 (375)
.+.||.|.=+.||.|.-++|..+|||-
T Consensus 96 G~~IGvGKEsdVY~~~~~~g~~~~vKf 122 (304)
T COG0478 96 GTKIGVGKESDVYVAIDPKGRKVAVKF 122 (304)
T ss_pred ccccccCccceEEEEECCCCCEEEEEE
Confidence 488999999999999999999999993
No 98
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=46.62 E-value=33 Score=28.21 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=15.2
Q ss_pred ceeEEEEEehhHHHHHHHHHHHHHhhh
Q 017211 259 KTIVIATVSSVAAVVAALLGLWYYLFR 285 (375)
Q Consensus 259 ~~~ii~iv~~~~~~~lvl~~~~~~~~~ 285 (375)
...|.+|+.++++++.+++++++.++.
T Consensus 60 gtAIaGIVfgiVfimgvva~i~icvCm 86 (155)
T PF10873_consen 60 GTAIAGIVFGIVFIMGVVAGIAICVCM 86 (155)
T ss_pred cceeeeeehhhHHHHHHHHHHHHHHhh
Confidence 345666666666665555555444444
No 99
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=43.76 E-value=28 Score=31.33 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=22.8
Q ss_pred cceec-cCCCcceEEEEcCCCCEEEEEec
Q 017211 347 ENKLG-EGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG-~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
..+|| .||.|+||+...+ |..++||+.
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~ 63 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHY 63 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEe
Confidence 57898 8999999999984 677888875
No 100
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=42.99 E-value=16 Score=35.72 Aligned_cols=28 Identities=32% Similarity=0.467 Sum_probs=24.0
Q ss_pred ceeccCCCcceEEEEcCC-CCEEEEEecC
Q 017211 348 NKLGEGGFGPVYKGKLPN-GKEVAVKSFH 375 (375)
Q Consensus 348 n~iG~G~fG~VYKg~L~~-G~~VAVKrL~ 375 (375)
.+||.|..|+||-..+.+ +...|+|.|+
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmd 111 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMD 111 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEec
Confidence 679999999999999955 3789999874
No 101
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=42.69 E-value=10 Score=36.90 Aligned_cols=27 Identities=41% Similarity=0.651 Sum_probs=23.1
Q ss_pred ceeccCCCcceEEEEc-CCCCEEEEEec
Q 017211 348 NKLGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 348 n~iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
+.||+|.||.|-++.= ..|++||||.+
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsI 86 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSI 86 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhh
Confidence 5699999999998865 57999999965
No 102
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=42.38 E-value=12 Score=39.71 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=16.6
Q ss_pred cccceeccCCCcceEEEEcC
Q 017211 345 SNENKLGEGGFGPVYKGKLP 364 (375)
Q Consensus 345 s~~n~iG~G~fG~VYKg~L~ 364 (375)
.....||+|+||+||-|.-.
T Consensus 997 t~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen 997 TLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred hhhhhhccCccceEEEecCC
Confidence 34688999999999999753
No 103
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=41.87 E-value=20 Score=33.52 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 344 FSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
|.--..||.|+||.|--... .+|...|.|.|+
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~ 78 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLD 78 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehhhcC
Confidence 33346799999999987766 457889999875
No 104
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.26 E-value=14 Score=36.21 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHhhccccccceeccCCCcceEEEEcCC-CCEEEEEecC
Q 017211 337 ILAATNNFSNENKLGEGGFGPVYKGKLPN-GKEVAVKSFH 375 (375)
Q Consensus 337 L~~AT~~Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL~ 375 (375)
..+||+ |+--.+||+|+||.|.-+.-.. ....|||.|+
T Consensus 345 ~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLk 383 (683)
T KOG0696|consen 345 RIKATD-FNFLMVLGKGSFGKVLLAERKGTDELYAIKILK 383 (683)
T ss_pred ceeecc-cceEEEeccCccceeeeecccCcchhhhhhhhc
Confidence 344553 6667899999999999887633 2457888774
No 105
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=37.97 E-value=11 Score=35.18 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred cceEEEEeec
Q 017211 184 QRGYALLQCT 193 (375)
Q Consensus 184 ~~vyglaQC~ 193 (375)
-++.++.+|.
T Consensus 100 vsv~~~G~C~ 109 (290)
T PF05454_consen 100 VSVIPIGSCQ 109 (290)
T ss_dssp ----------
T ss_pred EEEEEeeccC
Confidence 3556666664
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.67 E-value=8.9 Score=42.06 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=31.9
Q ss_pred hhhHHHhhccccccceeccCCCcceEEEEcCC-CCEEEEEecC
Q 017211 334 LTTILAATNNFSNENKLGEGGFGPVYKGKLPN-GKEVAVKSFH 375 (375)
Q Consensus 334 ~~~L~~AT~~Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL~ 375 (375)
..+|..-.++|.--.+||+|+||.|.-.+... +++.|.|+|+
T Consensus 67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ln 109 (1317)
T KOG0612|consen 67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILN 109 (1317)
T ss_pred HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhh
Confidence 34555555677777899999999999888744 6677888774
No 107
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=37.32 E-value=34 Score=30.20 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.3
Q ss_pred ccccccceeccCCC-cceEEEEcCCCCEEEEEe
Q 017211 342 NNFSNENKLGEGGF-GPVYKGKLPNGKEVAVKS 373 (375)
Q Consensus 342 ~~Fs~~n~iG~G~f-G~VYKg~L~~G~~VAVKr 373 (375)
.+|.--+.||+|.. |.|+|..+ +|+..|+|.
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKl 68 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKL 68 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEE
Confidence 34444578999999 99999999 788999997
No 108
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=37.18 E-value=26 Score=26.63 Aligned_cols=20 Identities=40% Similarity=0.800 Sum_probs=16.1
Q ss_pred ccC-CCcceEEEEcCCCCEEEEE
Q 017211 351 GEG-GFGPVYKGKLPNGKEVAVK 372 (375)
Q Consensus 351 G~G-~fG~VYKg~L~~G~~VAVK 372 (375)
|+| .-|+||| +++|+.|-|.
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~Vp 91 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYVP 91 (92)
T ss_pred CCCeECeEEEE--cCCceEEEec
Confidence 555 5799999 9999988763
No 109
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=36.63 E-value=12 Score=37.81 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEEec
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVKrL 374 (375)
..+||+||...|||....+.+.+|+|+.
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~iyalkkv 393 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQIYALKKV 393 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcchhhhHH
Confidence 3679999999999999988888998875
No 110
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.10 E-value=12 Score=33.76 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=24.3
Q ss_pred cceeccCCCcceEEEE-cCCCCEEEEEecC
Q 017211 347 ENKLGEGGFGPVYKGK-LPNGKEVAVKSFH 375 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~-L~~G~~VAVKrL~ 375 (375)
.+++|+|.+..|+.|. +.+..-+.||.|+
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLK 72 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNNEKCVIKILK 72 (338)
T ss_pred HHHHcCccHhhHhcccccCCCceEEEeeec
Confidence 4789999999999996 4567778899875
No 111
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.94 E-value=17 Score=33.50 Aligned_cols=29 Identities=38% Similarity=0.675 Sum_probs=24.1
Q ss_pred ccceeccCCCcceEEEEcC-CCCEEEEEec
Q 017211 346 NENKLGEGGFGPVYKGKLP-NGKEVAVKSF 374 (375)
Q Consensus 346 ~~n~iG~G~fG~VYKg~L~-~G~~VAVKrL 374 (375)
++.-||-|.||.|+-.+-| ||+.||.|+|
T Consensus 57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK~ 86 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVTDPRSGKRVALKKM 86 (449)
T ss_pred CCCcccccceeEEEeccCCCCccchhHhhc
Confidence 3578999999999987664 5889999986
No 112
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=32.15 E-value=53 Score=25.90 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=5.7
Q ss_pred eEEEEEehhHHHH
Q 017211 261 IVIATVSSVAAVV 273 (375)
Q Consensus 261 ~ii~iv~~~~~~~ 273 (375)
.++.++++.+.++
T Consensus 84 ~aLp~VIGGLcaL 96 (126)
T PF03229_consen 84 FALPLVIGGLCAL 96 (126)
T ss_pred cchhhhhhHHHHH
Confidence 3444444444333
No 113
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.00 E-value=23 Score=32.69 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=6.1
Q ss_pred HHHHHHHHHhHh
Q 017211 49 ASLNSLFDSLSS 60 (375)
Q Consensus 49 ~~l~~ll~~l~~ 60 (375)
..++.+++.+-.
T Consensus 58 pEmK~iid~~n~ 69 (295)
T TIGR01478 58 PELKEIIDKLNE 69 (295)
T ss_pred HHHHHHHHHHhH
Confidence 445555555544
No 114
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.39 E-value=41 Score=25.71 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=6.0
Q ss_pred hhHHHHHHHHH
Q 017211 7 SGAFHLFLITI 17 (375)
Q Consensus 7 ~~~~~~~~~~~ 17 (375)
||+++|+.++|
T Consensus 3 SK~~llL~l~L 13 (95)
T PF07172_consen 3 SKAFLLLGLLL 13 (95)
T ss_pred hhHHHHHHHHH
Confidence 56666654443
No 115
>PTZ00046 rifin; Provisional
Probab=31.25 E-value=15 Score=35.15 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCcc
Q 017211 86 STSTCRICVNNATQQLRQRCPSDKR 110 (375)
Q Consensus 86 ~~~~C~~Cl~~a~~~~~~~c~~~~~ 110 (375)
+.--|..=|++=++.---.|...-|
T Consensus 124 PTCVCEKSlADKvEK~CLkCG~~LG 148 (358)
T PTZ00046 124 PTCVCEKSLADKVEKGCLRCGCGLG 148 (358)
T ss_pred ccccccchHHHHHHHHHHhcCCccc
Confidence 3334555555555555445665444
No 116
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.07 E-value=58 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.261 Sum_probs=8.7
Q ss_pred ehhHHHHHHHHHHHHHhhhh
Q 017211 267 SSVAAVVAALLGLWYYLFRC 286 (375)
Q Consensus 267 ~~~~~~~lvl~~~~~~~~~~ 286 (375)
+++++++++++.+++++++.
T Consensus 8 ~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 8 IPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444445443
No 117
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=30.72 E-value=51 Score=31.84 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=11.2
Q ss_pred CcceEEECCceeEeecc
Q 017211 219 RRGWRILSPSCSLRYEE 235 (375)
Q Consensus 219 ~~gg~~~~~~C~lry~~ 235 (375)
..|--.+...|.+|-+.
T Consensus 221 GtGILti~~~C~vrt~~ 237 (361)
T PF12259_consen 221 GTGILTIRSDCKVRTSD 237 (361)
T ss_pred CcEEEEecCCCEEecCc
Confidence 34555677889988543
No 118
>PTZ00370 STEVOR; Provisional
Probab=30.66 E-value=24 Score=32.53 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHh
Q 017211 49 ASLNSLFDSLSS 60 (375)
Q Consensus 49 ~~l~~ll~~l~~ 60 (375)
..++.+++.+-.
T Consensus 57 pemK~i~d~~n~ 68 (296)
T PTZ00370 57 PELKEIIDKMNE 68 (296)
T ss_pred HHHHHHHHHHhH
Confidence 455566666554
No 119
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=30.01 E-value=22 Score=39.74 Aligned_cols=36 Identities=36% Similarity=0.568 Sum_probs=27.2
Q ss_pred HhhccccccceeccCCCcceEEEE-cCCCCEEEEEec
Q 017211 339 AATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAVKSF 374 (375)
Q Consensus 339 ~AT~~Fs~~n~iG~G~fG~VYKg~-L~~G~~VAVKrL 374 (375)
..|-++-..+.||.|.||.||-++ +++|...|||-+
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI 1268 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEI 1268 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhhh
Confidence 334444456899999999999986 566888899854
No 120
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=28.55 E-value=48 Score=33.92 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=27.2
Q ss_pred hccccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 341 TNNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 341 T~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
+.++.-...||+|.|+.|.-+.- ..|.+||||.++
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~id 90 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIID 90 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEeh
Confidence 34455567899999999998865 358999999763
No 121
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=14 Score=36.93 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=28.6
Q ss_pred HHhhccccccceeccCCCcceEEEEcCCCC-EEEEEec
Q 017211 338 LAATNNFSNENKLGEGGFGPVYKGKLPNGK-EVAVKSF 374 (375)
Q Consensus 338 ~~AT~~Fs~~n~iG~G~fG~VYKg~L~~G~-~VAVKrL 374 (375)
.+-.++|.....+|+||||+|+......+. .-|||||
T Consensus 45 sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkri 82 (516)
T KOG1033|consen 45 SREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRI 82 (516)
T ss_pred hhhhccccccccccccCccccCCccccccchhhHHHHh
Confidence 344467888899999999999988765443 6788876
No 122
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.62 E-value=48 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=14.2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCcc
Q 017211 86 STSTCRICVNNATQQLRQRCPSDKR 110 (375)
Q Consensus 86 ~~~~C~~Cl~~a~~~~~~~c~~~~~ 110 (375)
+.--|..=|++=++..--.|...-|
T Consensus 127 PTCvCEKSlADKvEK~CLkCg~~LG 151 (353)
T TIGR01477 127 PTCVCEKSLADKVEKGCLRCGCGLG 151 (353)
T ss_pred ccccccchHHHHHHHhHHhcCCccC
Confidence 3344655556666555555766655
No 123
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.41 E-value=1.2e+02 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=11.2
Q ss_pred eEEEEEehhHHHHHHHHHHHHHhhh
Q 017211 261 IVIATVSSVAAVVAALLGLWYYLFR 285 (375)
Q Consensus 261 ~ii~iv~~~~~~~lvl~~~~~~~~~ 285 (375)
.|+.++++..++++++...+++.++
T Consensus 14 lIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 14 LIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred eEEeehHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433334444444
No 124
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.40 E-value=30 Score=32.92 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=24.2
Q ss_pred ccccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 342 NNFSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 342 ~~Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
++|.--.+||+|.||.|--..= ..|+..|+|.|+
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlk 202 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILK 202 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhh
Confidence 3455568899999998875433 347788888764
No 125
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.09 E-value=1e+02 Score=28.61 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.8
Q ss_pred cceeEEEEEehhH
Q 017211 258 TKTIVIATVSSVA 270 (375)
Q Consensus 258 ~~~~ii~iv~~~~ 270 (375)
.+..++.|.++++
T Consensus 225 ~~G~VVlIslAiA 237 (281)
T PF12768_consen 225 SRGFVVLISLAIA 237 (281)
T ss_pred cceEEEEEehHHH
Confidence 3444444444443
No 126
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=24.54 E-value=43 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.3
Q ss_pred EEEEehhHHHHHHHHHHHHHhhh
Q 017211 263 IATVSSVAAVVAALLGLWYYLFR 285 (375)
Q Consensus 263 i~iv~~~~~~~lvl~~~~~~~~~ 285 (375)
++|+.+=+++.+++++..|++-+
T Consensus 37 aGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 37 AGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333444444444444433
No 127
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.18 E-value=90 Score=22.74 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=4.1
Q ss_pred HHHHHHHhhh
Q 017211 276 LLGLWYYLFR 285 (375)
Q Consensus 276 l~~~~~~~~~ 285 (375)
++.+++++++
T Consensus 17 Vap~WL~lHY 26 (75)
T PF06667_consen 17 VAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 128
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=23.73 E-value=56 Score=33.20 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.1
Q ss_pred eccCCCcceEEEEc-CCCCEEEEEec
Q 017211 350 LGEGGFGPVYKGKL-PNGKEVAVKSF 374 (375)
Q Consensus 350 iG~G~fG~VYKg~L-~~G~~VAVKrL 374 (375)
.|+|-|++|.++.- ..|++||||.+
T Consensus 440 ~GkGvFs~Vvra~D~~r~~~vAiKII 465 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQARGQEVAIKII 465 (752)
T ss_pred cccceeeeeeeccccCCCCeeEEEEe
Confidence 58999999999964 34789999976
No 129
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.05 E-value=1e+02 Score=22.47 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 017211 268 SVAAVVAALLGLWYYLFR 285 (375)
Q Consensus 268 ~~~~~~lvl~~~~~~~~~ 285 (375)
++++++++++-+++++++
T Consensus 9 PliiF~ifVaPiWL~LHY 26 (75)
T PRK09458 9 PLTIFVLFVAPIWLWLHY 26 (75)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 334444434444555544
No 130
>CHL00132 psaF photosystem I subunit III; Validated
Probab=22.98 E-value=1.7e+02 Score=25.07 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.8
Q ss_pred CcHHHHHHHHHHHHhHhhc
Q 017211 44 PAEYIASLNSLFDSLSSKA 62 (375)
Q Consensus 44 ~~~~~~~l~~ll~~l~~~~ 62 (375)
+.+|+..++.-+..|.+..
T Consensus 35 s~aF~kR~~~~~k~Le~rl 53 (185)
T CHL00132 35 SPAFQKRLNNSVKKLENRL 53 (185)
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 4578888777776665554
No 131
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=22.06 E-value=82 Score=32.47 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=24.3
Q ss_pred ccccceeccCCCcceEEEEcCC-CCEEEEEec
Q 017211 344 FSNENKLGEGGFGPVYKGKLPN-GKEVAVKSF 374 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~L~~-G~~VAVKrL 374 (375)
|..-..+|+|.||.|.-++-.. ..+|.||.+
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I 594 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMI 594 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEeeeh
Confidence 4455789999999999888744 467888875
No 132
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=21.91 E-value=36 Score=32.87 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=23.5
Q ss_pred ccccceeccCCCcceEEEEc-CCCCEEEEEecC
Q 017211 344 FSNENKLGEGGFGPVYKGKL-PNGKEVAVKSFH 375 (375)
Q Consensus 344 Fs~~n~iG~G~fG~VYKg~L-~~G~~VAVKrL~ 375 (375)
|---.++|+|.||.|-+..- ..+..||||.++
T Consensus 91 y~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik 123 (415)
T KOG0671|consen 91 YEIVDLLGEGTFGKVVECWDRETKEHVALKIIK 123 (415)
T ss_pred eehhhhhcCCcccceEEEeecCCCceehHHHHH
Confidence 33346789999999998754 236789999753
No 133
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=21.51 E-value=1.1e+02 Score=26.61 Aligned_cols=7 Identities=57% Similarity=1.450 Sum_probs=3.3
Q ss_pred hhhHHHH
Q 017211 199 SSCRSCL 205 (375)
Q Consensus 199 ~~C~~Cl 205 (375)
..|.+|.
T Consensus 60 ~~C~sCV 66 (186)
T PF05283_consen 60 NSCESCV 66 (186)
T ss_pred ccchhhh
Confidence 4444454
No 134
>PRK14051 negative regulator GrlR; Provisional
Probab=21.03 E-value=97 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=20.4
Q ss_pred cceeccCCCcceEEEEcCCCCEEEEE
Q 017211 347 ENKLGEGGFGPVYKGKLPNGKEVAVK 372 (375)
Q Consensus 347 ~n~iG~G~fG~VYKg~L~~G~~VAVK 372 (375)
.|+|--|-++.+|.|.+.+...+.++
T Consensus 28 ~nkInGGD~~~~YqG~isEd~~iilh 53 (123)
T PRK14051 28 GNMITGGDIASVYQGVLSEDEDIILH 53 (123)
T ss_pred CCEecCCccceEEeccccccceeEEE
Confidence 48888899999999999776544443
Done!