BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017213
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 223/372 (59%), Gaps = 43/372 (11%)
Query: 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNS 59
M LF + P +IV+ +D N + ++ K+ DK +E + K+++ +K IL G +
Sbjct: 6 MLPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTN 60
Query: 60 ESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD 119
E EP +EA AQL E + L LI L ++ E +KD TQ+ N+ R+Q+ ++ +
Sbjct: 61 EKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVE 120
Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
Y+ A+ +L +L+ GYE +AL G MLRECIRH+ +A+ +L S + FF Y++L F
Sbjct: 121 YISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTF 180
Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
DIA+DA ATFK+LLTRHK VA+FL +NYD F +Y KLL+S NY+T+RQ++KLLG+++
Sbjct: 181 DIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLKLLGELI 239
Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISL 299
LDR N +MT+Y+S ENL+++MNLLR
Sbjct: 240 LDRHNFAIMTKYISKPENLKLMMNLLR--------------------------------- 266
Query: 300 HMESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEAD 358
+ S +IQ EAFHVFK+F A+ +K IV IL+ N+ KL+ + F+ ++ +DEQF +
Sbjct: 267 --DKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADE 324
Query: 359 KAQVVKEIAGLE 370
K ++K+I L+
Sbjct: 325 KNYLIKQIRDLK 336
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 225/372 (60%), Gaps = 41/372 (11%)
Query: 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPV 64
F ++P DIV+ ++ + + D+ + K E E+ KN+ +K ILYG +E EP
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQ 63
Query: 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN 124
+EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y+
Sbjct: 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ 123
Query: 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD 184
++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+ FF Y+++ FDIA+D
Sbjct: 124 QNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASD 183
Query: 185 AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244
A ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ++KLLG++LLDR N
Sbjct: 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLKLLGELLLDRHN 242
Query: 245 SVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESS 304
+MT+Y+S ENL+++MNLLR + S
Sbjct: 243 FTIMTKYISKPENLKLMMNLLR-----------------------------------DKS 267
Query: 305 KSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEADKAQVV 363
++IQ EAFHVFK+F AN NK I+ IL+ N++KL+ + F+ D+ EDEQF +K +V
Sbjct: 268 RNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLV 327
Query: 364 KEIAGLEPRDRP 375
K+I L+ RP
Sbjct: 328 KQIRDLK---RP 336
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 215/367 (58%), Gaps = 38/367 (10%)
Query: 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPV 64
F ++P DIV+ ++ + D+ + K E E+ KN+ K ILYG +E EP
Sbjct: 5 FGKSHKSPADIVKNLKESXAVLEKQ-DISDKKAEKATEEVSKNLVAXKEILYGTNEKEPQ 63
Query: 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN 124
+EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y+
Sbjct: 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ 123
Query: 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD 184
++L L+ GYE+ ++AL+ G LRECIRH+ +A+ +L S+ FF Y++ FDIA+D
Sbjct: 124 QNILFXLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASD 183
Query: 185 AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244
A ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ++KLLG++LLDR N
Sbjct: 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLKLLGELLLDRHN 242
Query: 245 SVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESS 304
+ T+Y+S ENL++ NLLR + S
Sbjct: 243 FTIXTKYISKPENLKLXXNLLR-----------------------------------DKS 267
Query: 305 KSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEADKAQVV 363
++IQ EAFHVFK+F AN NK I+ IL+ N++KL+ + F+ D+ EDEQF +K +V
Sbjct: 268 RNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLV 327
Query: 364 KEIAGLE 370
K+I L+
Sbjct: 328 KQIRDLK 334
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 4 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 49
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With
Daminozide
Length = 374
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 15 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 60
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 12 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,473,745
Number of Sequences: 62578
Number of extensions: 342299
Number of successful extensions: 878
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 11
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)