Query 017213
Match_columns 375
No_of_seqs 122 out of 227
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 4E-125 9E-130 921.8 30.1 332 1-371 1-335 (335)
2 KOG1566 Conserved protein Mo25 100.0 2E-121 5E-126 887.0 31.6 339 1-374 1-341 (342)
3 PF08767 CRM1_C: CRM1 C termin 84.7 42 0.00091 33.4 15.1 159 80-239 72-243 (319)
4 cd00020 ARM Armadillo/beta-cat 81.6 17 0.00036 28.5 9.0 97 138-238 21-118 (120)
5 KOG1566 Conserved protein Mo25 80.5 6 0.00013 40.5 7.4 141 125-266 38-188 (342)
6 KOG0946 ER-Golgi vesicle-tethe 80.2 28 0.00061 39.8 12.9 154 65-266 21-176 (970)
7 PF10508 Proteasom_PSMB: Prote 79.7 48 0.001 35.0 14.0 167 84-266 43-212 (503)
8 PLN03200 cellulose synthase-in 78.7 1.4E+02 0.0031 37.6 19.0 197 72-321 439-640 (2102)
9 PF08064 UME: UME (NUC010) dom 77.3 2.8 6.1E-05 35.4 3.4 80 201-321 2-84 (107)
10 PF12783 Sec7_N: Guanine nucle 76.6 29 0.00063 30.7 9.9 135 95-243 4-149 (168)
11 cd00020 ARM Armadillo/beta-cat 72.9 25 0.00053 27.5 7.6 114 74-192 2-118 (120)
12 PTZ00429 beta-adaptin; Provisi 69.7 1.7E+02 0.0037 33.1 15.7 69 176-255 308-380 (746)
13 PF10508 Proteasom_PSMB: Prote 67.5 1.7E+02 0.0037 30.9 20.8 135 125-266 201-343 (503)
14 PTZ00446 vacuolar sorting prot 67.2 9.3 0.0002 36.2 4.7 28 1-28 1-41 (191)
15 PLN03200 cellulose synthase-in 65.3 1.1E+02 0.0025 38.4 14.1 197 75-323 526-726 (2102)
16 PF12717 Cnd1: non-SMC mitotic 64.9 62 0.0014 29.1 9.4 47 166-216 64-111 (178)
17 PF12717 Cnd1: non-SMC mitotic 64.4 40 0.00086 30.3 8.0 52 181-241 4-55 (178)
18 PF08569 Mo25: Mo25-like; Int 63.7 1.1E+02 0.0025 31.1 11.9 139 71-212 156-303 (335)
19 PF12348 CLASP_N: CLASP N term 63.3 23 0.0005 32.1 6.4 204 89-340 17-227 (228)
20 KOG1525 Sister chromatid cohes 59.7 3.9E+02 0.0084 32.3 17.4 254 9-321 16-330 (1266)
21 smart00802 UME Domain in UVSB 53.6 18 0.00038 31.1 3.7 80 201-321 2-84 (107)
22 KOG0946 ER-Golgi vesicle-tethe 47.5 2.6E+02 0.0057 32.4 12.3 128 65-199 107-246 (970)
23 KOG1991 Nuclear transport rece 47.3 5.5E+02 0.012 30.4 15.6 125 124-266 91-232 (1010)
24 KOG1655 Protein involved in va 46.6 69 0.0015 31.1 6.8 68 1-77 1-70 (218)
25 PF05952 ComX: Bacillus compet 43.9 16 0.00036 28.6 1.8 19 117-135 5-23 (57)
26 KOG3821 Heparin sulfate cell s 40.2 61 0.0013 35.5 5.9 112 141-273 52-174 (563)
27 PF01417 ENTH: ENTH domain; I 39.7 1.1E+02 0.0023 26.0 6.4 91 58-152 14-112 (125)
28 PF03224 V-ATPase_H_N: V-ATPas 39.0 1.4E+02 0.0031 29.1 7.9 93 167-266 107-201 (312)
29 KOG1058 Vesicle coat complex C 37.5 6.2E+02 0.013 29.5 13.1 212 48-324 38-276 (948)
30 KOG2180 Late Golgi protein sor 37.5 6.9E+02 0.015 28.8 15.8 32 86-137 107-138 (793)
31 PF00514 Arm: Armadillo/beta-c 32.7 1.5E+02 0.0033 20.1 5.1 37 71-107 4-40 (41)
32 PF15087 DUF4551: Protein of u 32.0 3.9E+02 0.0084 29.9 10.4 207 15-239 374-613 (617)
33 PF01602 Adaptin_N: Adaptin N 31.6 4.4E+02 0.0095 26.8 10.3 132 81-266 212-345 (526)
34 KOG1059 Vesicle coat complex A 31.0 9E+02 0.019 28.1 15.7 50 144-198 165-214 (877)
35 PF13646 HEAT_2: HEAT repeats; 29.0 1.4E+02 0.003 22.6 4.9 49 175-238 10-58 (88)
36 PF01365 RYDR_ITPR: RIH domain 28.8 1.3E+02 0.0029 27.5 5.5 53 181-240 115-169 (207)
37 PF14500 MMS19_N: Dos2-interac 27.8 2.5E+02 0.0055 27.4 7.5 100 177-280 52-166 (262)
38 KOG0166 Karyopherin (importin) 26.8 6.6E+02 0.014 27.5 11.0 112 72-188 357-480 (514)
39 COG5231 VMA13 Vacuolar H+-ATPa 26.4 1.5E+02 0.0033 31.1 5.9 73 184-266 127-201 (432)
40 PF06757 Ins_allergen_rp: Inse 25.9 1.8E+02 0.0038 26.5 5.7 65 155-225 22-89 (179)
41 PF07304 SRA1: Steroid recepto 25.2 1.6E+02 0.0034 26.8 5.2 40 41-80 67-106 (157)
42 PTZ00464 SNF-7-like protein; P 24.4 1.8E+02 0.004 27.8 5.8 27 1-27 1-31 (211)
43 KOG0166 Karyopherin (importin) 23.7 9.4E+02 0.02 26.4 11.4 119 69-194 311-436 (514)
44 KOG1920 IkappaB kinase complex 23.5 1.1E+03 0.023 28.9 12.4 96 7-118 862-960 (1265)
45 PF09735 Nckap1: Membrane-asso 21.7 4E+02 0.0086 31.8 8.8 126 161-301 40-174 (1116)
46 KOG1992 Nuclear export recepto 20.8 1.4E+03 0.031 26.9 13.2 97 124-224 124-247 (960)
47 PF13646 HEAT_2: HEAT repeats; 20.7 67 0.0015 24.3 1.7 52 218-318 7-58 (88)
48 PF14680 FANCI_HD2: FANCI heli 20.3 1.1E+02 0.0023 29.7 3.3 46 145-213 36-84 (234)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=4.2e-125 Score=921.76 Aligned_cols=332 Identities=58% Similarity=0.923 Sum_probs=294.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHhHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 017213 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (375)
Q Consensus 1 M~flFkkk~KtP~ElVr~l~e~l~~L~~~~~~~~~K~e~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~e~~~~d~ 80 (375)
|+||||++||||+|+||+++|+|.+|+ +..++++++++|||+|+|++||+||+|++|.+|++|+|+|||+|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~---~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD---SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH---SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc---cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999998 22567777888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCcc-chhHHhhhc-hhHHHHHHHhccCchhhHhHHHHHHHHHHHHHHH
Q 017213 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (375)
Q Consensus 81 l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~-~~v~Yl~~~-~~il~~L~~gYe~~dial~~G~mLRecir~e~la 158 (375)
+..||.+||+|+||+|||+++||++++|+++++++ |+|+||++| |||+++|+.||++||+|++||.|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 017213 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (375)
Q Consensus 159 ~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgel 238 (375)
++||++++||+||+|++.|+||||||||+||+|+||+||++||+||.+||||||+.|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeee
Q 017213 239 LLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLF 318 (375)
Q Consensus 239 Lldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvF 318 (375)
|+||+|++||+|||+|++|||+||+||+ |+||+||+|||||||||
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~-----------------------------------d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLR-----------------------------------DKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT------------------------------------S-HHHHHHHHHHHHHH
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhc-----------------------------------CcchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999
Q ss_pred eecCCCChhHHHHHHHhHHHHHHHHhhCCCCC-cccchHHHHHHHHHHHhcCCC
Q 017213 319 AANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLEP 371 (375)
Q Consensus 319 vANp~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~DeqF~~EK~~lI~~I~~L~~ 371 (375)
||||||||||++||.+||+||++||.+|++|+ +|+||.|||++||++|++|||
T Consensus 282 VANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 282 VANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp HH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT---
T ss_pred HhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999 999999999999999999987
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=2.4e-121 Score=887.00 Aligned_cols=339 Identities=58% Similarity=0.897 Sum_probs=334.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHhHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 017213 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (375)
Q Consensus 1 M~flFkkk~KtP~ElVr~l~e~l~~L~~~~~~~~~K~e~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~e~~~~d~ 80 (375)
|++||+++||||+|+||.+||.|.+++..++.++.|+++++|||+|++..+|+|+||++|.||.+|+|+|||+|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccC-chhhHhHHHHHHHHHHHHHHHH
Q 017213 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-TDMALHYGAMLRECIRHQSVAR 159 (375)
Q Consensus 81 l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~-~dial~~G~mLRecir~e~la~ 159 (375)
+.+||.++|+++||+|||+++||++++|+++|+++|+|+|+++|||+++.|+.||++ +|+||+||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 017213 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (375)
Q Consensus 160 ~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelL 239 (375)
++|+|++||+||.|+++|+||||||||+|||++||+||.+|||||.+||||||.+|+++|++|+||||||||+||||++|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred ccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeee
Q 017213 240 LDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFA 319 (375)
Q Consensus 240 ldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFv 319 (375)
+||+|+.+|++||+||+|||+||+||| |+|||||+|||||||+||
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llr-----------------------------------dkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLR-----------------------------------DKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhh-----------------------------------CccccchHHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999
Q ss_pred ecCCCChhHHHHHHHhHHHHHHHHhhCCCCC-cccchHHHHHHHHHHHhcCCCCCC
Q 017213 320 ANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLEPRDR 374 (375)
Q Consensus 320 ANp~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~DeqF~~EK~~lI~~I~~L~~~~~ 374 (375)
||||||+||.+||.+||+||++|+.+|++|+ +|+||++||+++|++|+.|++.+.
T Consensus 286 AnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l~~~~~ 341 (342)
T KOG1566|consen 286 ANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQLKRLDS 341 (342)
T ss_pred cCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcccccC
Confidence 9999999999999999999999999999999 999999999999999999988764
No 3
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.71 E-value=42 Score=33.42 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred hHHHHHHhCCCCChhhhh-hHHHHHHHHhhhcccCccchhHHhhhc--hhHHHHHHHhcc-CchhhHhHHHHHHHHHHHH
Q 017213 80 TLRLLITCLPKLNLEARK-DATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYE-NTDMALHYGAMLRECIRHQ 155 (375)
Q Consensus 80 ~l~~Li~~l~~L~fE~RK-d~~~If~~llr~~~~~~~~~v~Yl~~~--~~il~~L~~gYe-~~dial~~G~mLRecir~e 155 (375)
++..++.....-..++|- .|-.+++.+.++-.+.-.+.+.-+..+ --++.++-++++ .||....+=.+||-|+++-
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 344344444444555664 455666666664322222222222111 122333334444 6899999999999999884
Q ss_pred HHHHHHhcchhhhhhhhhc----cCCChhhhhhHHHHHHHHHhhC----hHHHHHHHHhhHHHHHHHHHHhhccCCC-cc
Q 017213 156 SVARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRH----KSTVAEFLSKNYDWFFAEYNSKLLESSN-YI 226 (375)
Q Consensus 156 ~la~~iL~s~~~~~fF~yi----~~~~FdIasDAf~TfkelLt~H----k~~vaeFl~~Nyd~Ff~~yn~~Ll~s~N-YV 226 (375)
.-+=.-|..+.|..+++.+ +.++-||+..++.++.++++.- +..+.+|....|-.+..+.-.-|..+.. ..
T Consensus 152 f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~g 231 (319)
T PF08767_consen 152 FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSG 231 (319)
T ss_dssp THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHH
Confidence 3333337777888888766 5699999999999999999953 4566688887776666664434444432 22
Q ss_pred hhhhhHHHHHHHh
Q 017213 227 TRRQAVKLLGDIL 239 (375)
Q Consensus 227 TkRQslKLLgelL 239 (375)
=+.|+ .+|..++
T Consensus 232 f~~q~-~iL~~Lf 243 (319)
T PF08767_consen 232 FKLQS-QILSNLF 243 (319)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 33333 5566655
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.60 E-value=17 Score=28.47 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=69.7
Q ss_pred chhhHhHHHHHHHHHHH-HHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHH
Q 017213 138 TDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYN 216 (375)
Q Consensus 138 ~dial~~G~mLRecir~-e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn 216 (375)
++.-..+-..|..+..+ +.....+++.+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555556665555 77788888888888888999989999999999999999776554333333333 334443
Q ss_pred HhhccCCCcchhhhhHHHHHHH
Q 017213 217 SKLLESSNYITRRQAVKLLGDI 238 (375)
Q Consensus 217 ~~Ll~s~NYVTkRQslKLLgel 238 (375)
+++.+++.=++++++-+|+.|
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHh
Confidence 677777888889999888865
No 5
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=80.53 E-value=6 Score=40.50 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=86.6
Q ss_pred hhHHHHHHHhccCchhhHhHHHHHHHHHHH-HHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhCh---HHH
Q 017213 125 IDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---STV 200 (375)
Q Consensus 125 ~~il~~L~~gYe~~dial~~G~mLRecir~-e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk---~~v 200 (375)
-++++.+-+||..+...+......+.-... -.|+.-+-.+..+.....++..-.|+--=|+...|.-++.++. ..+
T Consensus 38 ~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~t 117 (342)
T KOG1566|consen 38 EKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPT 117 (342)
T ss_pred HHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchH
Confidence 344444445544444444333333332221 1244444555566666667767777777788888888887664 566
Q ss_pred HHHHHhhHHHHH---HHH---HHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhh
Q 017213 201 AEFLSKNYDWFF---AEY---NSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 201 aeFl~~Nyd~Ff---~~y---n~~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
++||..|.+-.+ ..| ...+|..+|.+..--+-+.|++++|.-.|+.-.-.||..|.. ++.--.+.
T Consensus 118 v~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-diasdA~~ 188 (342)
T KOG1566|consen 118 VEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-DIASDAFS 188 (342)
T ss_pred HHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-HHHHHHHH
Confidence 788877755433 222 235677777776666667899999999999999999987765 55444333
No 6
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=28 Score=39.75 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhh--chhHHHHHHHhccCchhhH
Q 017213 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA--NIDLLDILIAGYENTDMAL 142 (375)
Q Consensus 65 ~e~~~qLa~e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~--~~~il~~L~~gYe~~dial 142 (375)
.|.+..|......+-+ +|-|||++.=...+-|..- .-+.+ =+-+++.|-.-|.++|+.-
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR-------~~Vga~Gmk~li~vL~~D~~D~E~ik 81 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYR-------EEVGAQGMKPLIQVLQRDYMDPEIIK 81 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHH-------HHHHHcccHHHHHHHhhccCCHHHHH
Confidence 3445566665555433 4789988876665554220 01112 3778888888999988765
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccC
Q 017213 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (375)
Q Consensus 143 ~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s 222 (375)
.+=..+-..++|+. +-..+..+. .+.|-=.-|-|.|+..+..+.--+. +.++|
T Consensus 82 ~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll~-----~~e~~------- 134 (970)
T KOG0946|consen 82 YALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLLQ-----SLEEF------- 134 (970)
T ss_pred HHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHHH-----HHHhh-------
Confidence 55444444444443 112334455 5667777788888888766543332 23344
Q ss_pred CCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhh
Q 017213 223 SNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 223 ~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
++=.||-+++||..+|..|. -++-.--+.+|--.-.+|-+|+
T Consensus 135 -DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 135 -DFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred -chhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHh
Confidence 48889999999999999998 5677778899999999999999
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.67 E-value=48 Score=34.96 Aligned_cols=167 Identities=19% Similarity=0.261 Sum_probs=105.0
Q ss_pred HHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccCchhhH--hHHHHHHHHHHHHHH-HHH
Q 017213 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL--HYGAMLRECIRHQSV-ARY 160 (375)
Q Consensus 84 Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~~dial--~~G~mLRecir~e~l-a~~ 160 (375)
+..||..-+-|.-..+..|...++... .| +.+ -|++...|..|..+++-.+ .+=..|+-|++|... +..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~----~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL----SP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc----CH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555445454444444555444422 22 222 5777777888877654433 222336777777665 555
Q ss_pred HhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc
Q 017213 161 VLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240 (375)
Q Consensus 161 iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLl 240 (375)
+.+...+-.....+..++-+||..|...++.+.. |+.-.+..+..|. ..... .|+..+|=+.|...+.++.++.
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~- 188 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIA- 188 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHH-
Confidence 5666677777789999999999999999999986 4545555556554 45664 7888767788888999998885
Q ss_pred cccchHHHHHhhcChhhHHHHHHHhh
Q 017213 241 DRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 241 dr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
..+... ..++.+..-+..+...|.
T Consensus 189 -~~S~~~-~~~~~~sgll~~ll~eL~ 212 (503)
T PF10508_consen 189 -SHSPEA-AEAVVNSGLLDLLLKELD 212 (503)
T ss_pred -hcCHHH-HHHHHhccHHHHHHHHhc
Confidence 232222 244444445555555544
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=78.73 E-value=1.4e+02 Score=37.58 Aligned_cols=197 Identities=19% Similarity=0.189 Sum_probs=132.4
Q ss_pred HHHHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhc--hhHHHHHHHhccCchhhHhHHHHHH
Q 017213 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLR 149 (375)
Q Consensus 72 a~e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~--~~il~~L~~gYe~~dial~~G~mLR 149 (375)
.+.+...+.+..|+..|..=+-+.++.+...+.++-.....++ .--+... |-++..|-.| ++++--.+-..|-
T Consensus 439 ~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr---~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~ 513 (2102)
T PLN03200 439 WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK---WAITAAGGIPPLVQLLETG--SQKAKEDSATVLW 513 (2102)
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 4556667788999999988788888888888887754222222 1122222 5555555433 3333333333333
Q ss_pred HHHHHHH-HHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhC-hHHHHHHHHhhHHHHHHHHHHhhccCCCcch
Q 017213 150 ECIRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (375)
Q Consensus 150 ecir~e~-la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~H-k~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVT 227 (375)
.+..|+. ..+.|.....+..+++.++.+++++-..|..++..++... ...+ ..+ ..|+.+++--+
T Consensus 514 NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~L-v~LLlsdd~~~ 580 (2102)
T PLN03200 514 NLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQL-TALLLGDLPES 580 (2102)
T ss_pred HHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHH-HHHhcCCChhH
Confidence 3333444 4444556678888999999999999989998888876532 2222 334 26788888888
Q ss_pred hhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCccc
Q 017213 228 RRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSI 307 (375)
Q Consensus 228 kRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~I 307 (375)
+-.+++.||-++.--....+.+.-+.+..-+..+..||+ +.++.+
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~-----------------------------------sgs~~i 625 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS-----------------------------------SSKEET 625 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc-----------------------------------CCCHHH
Confidence 888999999998766666666666767789999999999 899999
Q ss_pred chhhheee-eeeeec
Q 017213 308 QIEAFHVF-KLFAAN 321 (375)
Q Consensus 308 q~EAFhvF-KvFvAN 321 (375)
|-+|..+. ++|-.+
T Consensus 626 kk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 626 QEKAASVLADIFSSR 640 (2102)
T ss_pred HHHHHHHHHHHhcCC
Confidence 99998655 344433
No 9
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=77.31 E-value=2.8 Score=35.42 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=57.9
Q ss_pred HHHHHhhHHHHHHHHHHhhcc---CCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhH
Q 017213 201 AEFLSKNYDWFFAEYNSKLLE---SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVED 277 (375)
Q Consensus 201 aeFl~~Nyd~Ff~~yn~~Ll~---s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~ 277 (375)
++||..|+=..+..+|..|.. +..|..|+++++=+|+++- .+..||+.- +--+|..|++-
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~--~pQI~a~L~sa--------- 64 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA--RPQIMACLQSA--------- 64 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH--HHHHHHHHHHH---------
Confidence 689999998888888866666 7999999999999999993 233333321 22366666611
Q ss_pred HHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeeeec
Q 017213 278 IFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFAAN 321 (375)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFvAN 321 (375)
=..+..+.+|+.++..||-+
T Consensus 65 ------------------------l~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 65 ------------------------LEIPELREEALSCWNCFIKT 84 (107)
T ss_pred ------------------------hCChhhHHHHHHHHHHHHHH
Confidence 23347788999999999876
No 10
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.63 E-value=29 Score=30.68 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHHhhhcc--cCccchhHHhh--hc-----hhHHHHHHHhccCchhhHhHHHHHHHHHHHHHHHHHHhcch
Q 017213 95 ARKDATQVVANLQRQQV--HSKLIASDYLE--AN-----IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQ 165 (375)
Q Consensus 95 ~RKd~~~If~~llr~~~--~~~~~~v~Yl~--~~-----~~il~~L~~gYe~~dial~~G~mLRecir~e~la~~iL~s~ 165 (375)
..+|+..||..|-+-.. .+.....+++. .. -+++...+.++ |..++..-+|+.+.. ++.++
T Consensus 4 ~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~---------~~~f~~~~~~~~l~~-~lk~~ 73 (168)
T PF12783_consen 4 YVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENH---------GSVFRSSEEHPSLIN-LLKDD 73 (168)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhC---------HHHHhCCcchHHHHH-HHHHH
Confidence 45889999998877441 11111123332 11 22333333322 332221113334444 44444
Q ss_pred hhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCC--cchhhhhHHHHHHHhcccc
Q 017213 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN--YITRRQAVKLLGDILLDRS 243 (375)
Q Consensus 166 ~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~N--YVTkRQslKLLgelLldr~ 243 (375)
....+...+..++|.|..-+...|.-++.+++ .+|..-.+.|+......++++++ |=.|.-+|..+.++.-++.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 44455555666779999999999999997765 45666678889887645888777 5666678888888886554
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.87 E-value=25 Score=27.50 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=76.5
Q ss_pred HHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHh--ccCchhhHhHHHHHHHH
Q 017213 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAMLREC 151 (375)
Q Consensus 74 e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~g--Ye~~dial~~G~mLRec 151 (375)
++.+.+.+..|+..|..=+.+.|..+.....++-... .+....+.. .+++..|+.. .+++++...+-..|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN----NDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC----HHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5677888888888888888899999998888887643 223333333 2333333322 24678888887888887
Q ss_pred HHHHH-HHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHH
Q 017213 152 IRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKEL 192 (375)
Q Consensus 152 ir~e~-la~~iL~s~~~~~fF~yi~~~~FdIasDAf~Tfkel 192 (375)
..++. ....+...+.+..+.+++..++-++...|..++..+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77764 444555566677777888777777777776666543
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=69.73 E-value=1.7e+02 Score=33.06 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHH----HHHh
Q 017213 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV----MTRY 251 (375)
Q Consensus 176 ~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr~N~~v----M~rY 251 (375)
.+.-+|.-=++.+...++.+|+.+. ..+++.||-.|| .++|| |+..|.+|-.+. +..|... +..|
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf----~~~~~~Ff~~~~-----Dp~yI-K~~KLeIL~~La-ne~Nv~~IL~EL~eY 376 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLL----RTNLDSFYVRYS-----DPPFV-KLEKLRLLLKLV-TPSVAPEILKELAEY 376 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHH----HHHHHhhhcccC-----CcHHH-HHHHHHHHHHHc-CcccHHHHHHHHHHH
Confidence 3456888889999999999998665 446888997776 68896 999999999765 5555543 2345
Q ss_pred hcCh
Q 017213 252 VSSR 255 (375)
Q Consensus 252 is~~ 255 (375)
+.+.
T Consensus 377 a~d~ 380 (746)
T PTZ00429 377 ASGV 380 (746)
T ss_pred hhcC
Confidence 5543
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=67.54 E-value=1.7e+02 Score=30.92 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=93.5
Q ss_pred hhHHHHHHHhccCchh--hHhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhh------HHHHHHHHHhhC
Q 017213 125 IDLLDILIAGYENTDM--ALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD------AAATFKELLTRH 196 (375)
Q Consensus 125 ~~il~~L~~gYe~~di--al~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasD------Af~TfkelLt~H 196 (375)
-.+++.++..+++.|+ -+++-.+|-+....+.-++||.....+.++.+.++.+.-|-... ...-|-.+.+.+
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 4488888888888885 67888999999999999999999999999988886554443111 122333333334
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhh
Q 017213 197 KSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 197 k~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
+.-+ ..-|..|..... .+++|.+-.-+=-|+.-||.|=....-..++ -...++.++.+|....
T Consensus 281 ~~~v----~~~~p~~~~~l~-~~~~s~d~~~~~~A~dtlg~igst~~G~~~L--~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 281 PQEV----LELYPAFLERLF-SMLESQDPTIREVAFDTLGQIGSTVEGKQLL--LQKQGPAMKHVLKAIG 343 (503)
T ss_pred hHHH----HHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHhCCHHHHHHH--HhhcchHHHHHHHHHH
Confidence 3333 345677777776 7888988888888899999876444444444 4556666666666655
No 14
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=67.21 E-value=9.3 Score=36.17 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCh-------------HHHHHHHHHHHHHhhc
Q 017213 1 MKGLFKSKPRTP-------------VDIVRQTRDLIIYANR 28 (375)
Q Consensus 1 M~flFkkk~KtP-------------~ElVr~l~e~l~~L~~ 28 (375)
|.|||+++.++| .+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 889998765544 4555566777766654
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.25 E-value=1.1e+02 Score=38.36 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=132.9
Q ss_pred HHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccCchhhH----hHHHHHHH
Q 017213 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL----HYGAMLRE 150 (375)
Q Consensus 75 ~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~~dial----~~G~mLRe 150 (375)
+.+.+.+..|+..|..=+++.++.+.....+|.+..... .+ +.++..| .+ +++.+-. ..|.|+-.
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---~I------~~Lv~LL-ls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---TI------SQLTALL-LG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---HH------HHHHHHh-cC-CChhHHHHHHHHHHHHHhh
Confidence 345688888888888889999999999888887633111 11 2233222 11 2222222 23444443
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 017213 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (375)
Q Consensus 151 cir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQ 230 (375)
+-.++.....+.....+..+.+.++.++=++--+|..++-.+.+.+++.....+..+- +.-.- .||.+++.-++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga---IpPLV-~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI---INPCI-KLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC---HHHHH-HHHhcCChHHHHH
Confidence 3344434333445567788888888899899999999999999999888777666553 22332 6999999999999
Q ss_pred hHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchh
Q 017213 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIE 310 (375)
Q Consensus 231 slKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~E 310 (375)
+-.-|+.+.. ....--..++-...-++.++.+|+ +++-.+.-+
T Consensus 671 AA~AL~nL~~--~~~~~q~~~~v~~GaV~pL~~LL~-----------------------------------~~d~~v~e~ 713 (2102)
T PLN03200 671 SARALAALSR--SIKENRKVSYAAEDAIKPLIKLAK-----------------------------------SSSIEVAEQ 713 (2102)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHcCCHHHHHHHHh-----------------------------------CCChHHHHH
Confidence 9999999995 333333334456778999999999 777677777
Q ss_pred hheeeeeeeecCC
Q 017213 311 AFHVFKLFAANQN 323 (375)
Q Consensus 311 AFhvFKvFvANp~ 323 (375)
|-...--++..|.
T Consensus 714 Al~ALanLl~~~e 726 (2102)
T PLN03200 714 AVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHcCch
Confidence 7666666666554
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=64.94 E-value=62 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=36.5
Q ss_pred hhhhhhhhccCCChhhhhhHHHHHHHHHhh-ChHHHHHHHHhhHHHHHHHHH
Q 017213 166 HMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYN 216 (375)
Q Consensus 166 ~~~~fF~yi~~~~FdIasDAf~TfkelLt~-Hk~~vaeFl~~Nyd~Ff~~yn 216 (375)
.|..+...+.-++=+|.+-|-.-|.+++.+ ++.++ .+++-.....+|
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~ 111 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLN 111 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHh
Confidence 458888888999999999999999999998 77666 444445555555
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=64.37 E-value=40 Score=30.33 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcc
Q 017213 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLD 241 (375)
Q Consensus 181 IasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLld 241 (375)
|-+-|..++-++..||+.+|-.|+..= | ..|.+++=..|++|+..|..+++.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l-------~--~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNL-------Y--KCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHH-------H--HHHCCCCHHHHHHHHHHHHHHHHc
Confidence 456788899999999999987665422 2 678888889999999999999864
No 18
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=63.71 E-value=1.1e+02 Score=31.06 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=96.2
Q ss_pred HHHHHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccCch-------hhHh
Q 017213 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD-------MALH 143 (375)
Q Consensus 71 La~e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~~d-------ial~ 143 (375)
+|.-+..+..+..+......=.||.--|+-..|..++-+ .+..+.+||..|-|-......+-=..+ .-=.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~---hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR---HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS---SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 444444445556667777888999999999999998875 335678999998766555444332222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhh-C-hHHHHHHHHhhHHHHH
Q 017213 144 YGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-H-KSTVAEFLSKNYDWFF 212 (375)
Q Consensus 144 ~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~-H-k~~vaeFl~~Nyd~Ff 212 (375)
.|.+|-+=.-++.+.+|+=...+++-+...+..+.=-|..+||..||--..+ | +.-|.+.|.+|=+...
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl 303 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLL 303 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 5666666666777888888888888888888888888999999999976652 2 3567788888876543
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=63.26 E-value=23 Score=32.14 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccCchh--hHhHHHHHHHHHHHHH--HHHHHhcc
Q 017213 89 PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM--ALHYGAMLRECIRHQS--VARYVLES 164 (375)
Q Consensus 89 ~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~~di--al~~G~mLRecir~e~--la~~iL~s 164 (375)
+.-+|+.|.++.+-...+++..+... ...+|+..=.+++..+...-.+.-. +-.+-..+.++.++-. +..+ -+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~-~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPED-FPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccc-cHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 67789999988888888887552211 1223332222555566665554333 3333333333332211 0000 01
Q ss_pred hhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHH-HHHHHHhhccCCCcchhhhhHHHHHHHhcccc
Q 017213 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWF-FAEYNSKLLESSNYITRRQAVKLLGDILLDRS 243 (375)
Q Consensus 165 ~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~F-f~~yn~~Ll~s~NYVTkRQslKLLgelLldr~ 243 (375)
..+-.+++-+..++=-|+..|-.++..+...-. . ..+. +.... ....+.|=-.|+.++.+|..++..=.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILS-QGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHH-HHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 112233333344444567777777777665322 0 1233 33443 67889999999999999998884433
Q ss_pred -chHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeee-ec
Q 017213 244 -NSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFA-AN 321 (375)
Q Consensus 244 -N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFv-AN 321 (375)
+...+..-..=+.-.+.+..+|. |.+..++-.|..+|..|- .-
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~-----------------------------------D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLS-----------------------------------DADPEVREAARECLWALYSHF 208 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHT-----------------------------------SS-HHHHHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCC-----------------------------------CCCHHHHHHHHHHHHHHHHHC
Confidence 12222221111556677888888 999888888887777664 33
Q ss_pred CCCChhHHHHHHHhHHHHH
Q 017213 322 QNKPPDIVSILVANRSKLL 340 (375)
Q Consensus 322 p~K~~~I~~IL~~Nr~kLl 340 (375)
|.+...+.+-|-.|..|.|
T Consensus 209 ~~~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 209 PERAESILSMLDPNIQKYL 227 (228)
T ss_dssp -HHH---------------
T ss_pred CHhhccchhcchhcccccC
Confidence 5555545444444444443
No 20
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.66 E-value=3.9e+02 Score=32.35 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=136.3
Q ss_pred CCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHhHH-HHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHHh
Q 017213 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIR-ELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (375)
Q Consensus 9 ~KtP~ElVr~l~e~l~~L~~~~~~~~~K~e~k~eeisK~L~-~mK~il~G~~e~ep~~e~~~qLa~e~~~~d~l~~Li~~ 87 (375)
+=|-.|+++.|+++..-|.+... +.-- .+.+.+... -++..+....+.+ +.-|+. .|-.++|+. +
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~q--d~~~---~~~~~pl~~~l~~~~~L~h~d~d-----vrllva-cCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQ--DNLD---LASLLPLADHLIKDFLLKHKDKD-----VRLLVA-CCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhccc--Cchh---HHHHHHHHHHHhhHHHhcCCCcC-----hhHHHH-HHHHHHHHH---h
Confidence 44567888888877666554321 1110 123333322 2345555454443 222333 333445544 5
Q ss_pred CCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHh--------cc-------------------Cchh
Q 017213 88 LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--------YE-------------------NTDM 140 (375)
Q Consensus 88 l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~g--------Ye-------------------~~di 140 (375)
-|.+||+.- +...||.-++++.-|=.-+..-|.-+++.|+..|... ++ .+..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 678888777 8899999999988665555566777777777666332 11 2222
Q ss_pred hHhHHHHHHHHHHHH-----HHHHHHhcc----------------------------hhhhhhhhhccCCChhhhhhHHH
Q 017213 141 ALHYGAMLRECIRHQ-----SVARYVLES----------------------------QHMKKFFDYIQLPNFDIAADAAA 187 (375)
Q Consensus 141 al~~G~mLRecir~e-----~la~~iL~s----------------------------~~~~~fF~yi~~~~FdIasDAf~ 187 (375)
..+.+.|++..|--. .+...+|+. +....|+.-.-...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 233444444444211 122222211 01222222111111113334444
Q ss_pred HHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhh
Q 017213 188 TFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRV 267 (375)
Q Consensus 188 TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~ 267 (375)
.+.+++-.+-.++.+-|..=.. +. ..=|.|+|=-+|-++++|+|.++.+....-. =+.+.-.+....-+.
T Consensus 241 ~~he~i~~L~~~~p~ll~~vip----~l-~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~- 310 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLAVIP----QL-EFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFN- 310 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----HH-HHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhc-
Confidence 4555555555555554443222 11 1235678888999999999999988774332 124444555555555
Q ss_pred hccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeeeec
Q 017213 268 RYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFAAN 321 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFvAN 321 (375)
|.|-.+++|+--.=|-+.+|
T Consensus 311 ----------------------------------D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 311 ----------------------------------DISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred ----------------------------------cCChhhhhhHHHHhHHHHhc
Confidence 99999999988777766655
No 21
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=53.59 E-value=18 Score=31.12 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=58.1
Q ss_pred HHHHHhhHHHHHHHHHHhhccCC---CcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhH
Q 017213 201 AEFLSKNYDWFFAEYNSKLLESS---NYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVED 277 (375)
Q Consensus 201 aeFl~~Nyd~Ff~~yn~~Ll~s~---NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~ 277 (375)
++||.+|.=..++.++..+..+. .|.-|+++++=+|+++- +|-.+|++. +=-+|..|++
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a--~pQI~acL~s---------- 63 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSA--LPQIMACLQS---------- 63 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHH--HHHHHHHHHH----------
Confidence 67899998777788877777777 88999999999999993 444555543 2256666761
Q ss_pred HHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeeeec
Q 017213 278 IFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFAAN 321 (375)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFvAN 321 (375)
+|. .+.+|.+||-+..+||-.
T Consensus 64 --------------------aL~---~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 64 --------------------ALE---IPELRSLALRCWHVLIKT 84 (107)
T ss_pred --------------------HhC---chhHHHHHHHHHHHHHHh
Confidence 222 345788888888888865
No 22
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.55 E-value=2.6e+02 Score=32.43 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhh-chHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccch-hHHhhhchhHHHHHHHhccC-----
Q 017213 65 SEACAQLTAEFFRE-NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA-SDYLEANIDLLDILIAGYEN----- 137 (375)
Q Consensus 65 ~e~~~qLa~e~~~~-d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~-v~Yl~~~~~il~~L~~gYe~----- 137 (375)
.+.-.++|..|... |.+.+|+..+...||-.|.-..++++++++... +- =+-+..+|-=+..|+.--.+
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~----~e~q~~ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP----TELQDALLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC----HHHHHHHHHCchhHHHHHHHHhhhhhhh
Confidence 44567888888654 899999999999999999999999999998652 22 24455566555555433221
Q ss_pred -chhhHhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccC-CCh---hhhhhHHHHHHHHHhhChHH
Q 017213 138 -TDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQL-PNF---DIAADAAATFKELLTRHKST 199 (375)
Q Consensus 138 -~dial~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~-~~F---dIasDAf~TfkelLt~Hk~~ 199 (375)
.|-.+..-..-|+|-.-+.+ |-..-.|...|+-|+- ++- =|+-|++.-+.-||..|-+-
T Consensus 183 RNe~iLlL~eL~k~n~~IQKl---VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSSIQKL---VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred chhHHHHHHHHHccCchHHHH---HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 12222233333333332222 2223346666666643 222 35668888888888777543
No 23
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.30 E-value=5.5e+02 Score=30.40 Aligned_cols=125 Identities=20% Similarity=0.223 Sum_probs=67.9
Q ss_pred chhHHHHHHHhccCchhhHhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhc----cCCChhhhhhHHHHHHHHHhhCh--
Q 017213 124 NIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRHK-- 197 (375)
Q Consensus 124 ~~~il~~L~~gYe~~dial~~G~mLRecir~e~la~~iL~s~~~~~fF~yi----~~~~FdIasDAf~TfkelLt~Hk-- 197 (375)
+-.|++.++++.+ -+=...|+.|+-.|+++-- .+.|.+++++ +.+.=-.-=-|+-.+.+|...|+
T Consensus 91 renIl~~iv~~p~--~iRvql~~~l~~Ii~~D~p-------~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k 161 (1010)
T KOG1991|consen 91 RENILETIVQVPE--LIRVQLTACLNTIIKADYP-------EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWK 161 (1010)
T ss_pred HHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCc-------ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc
Confidence 3456677776632 1222333333333333211 2345555544 33322222245566666666555
Q ss_pred ---------HHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc--cccchHHHHHhhcChhhHHHHHHHhh
Q 017213 198 ---------STVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL--DRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 198 ---------~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLl--dr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
.++.+++- ..-+..+ +|+..+|| ||.+++--||- --..+--.-++.++++..---|+|++
T Consensus 162 ~~eeR~~l~~~v~~~fP----~il~~~~-~ll~~~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 162 KDEERQPLGEAVEELFP----DILQIFN-GLLSQESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred cccccccHHHHHHHHHH----HHHHHHH-hhccccch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 33334433 3334454 79998877 67777766663 23334445678889999999998887
No 24
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.59 E-value=69 Score=31.12 Aligned_cols=68 Identities=29% Similarity=0.438 Sum_probs=42.4
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHH-HHHHHhHHHHHhhhccCCCCCCchHHHHHHHHHHHh
Q 017213 1 MKGLFK-SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (375)
Q Consensus 1 M~flFk-kk~KtP~ElVr~l~e~l~~L~~~~~~~~~K~e~k~-eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~e~~~ 77 (375)
|.-+|+ ++||.|. -+|.+++..+++.++.- +++-.++ .|++|+=.+|+.+=- .|...++.|=|-.+.+
T Consensus 1 MnRiFG~~k~k~p~---psL~dai~~v~~r~dSv-e~KIskLDaeL~k~~~Qi~k~R~-----gpaq~~~KqrAlrVLk 70 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPP---PSLQDAIDSVNKRSDSV-EKKISKLDAELCKYKDQIKKTRP-----GPAQNALKQRALRVLK 70 (218)
T ss_pred CcccccCCCCCCCC---hhHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHHHH
Confidence 677895 5578885 45667777777654322 3333445 489999888888733 3555666655554443
No 25
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=43.91 E-value=16 Score=28.59 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.8
Q ss_pred hhHHhhhchhHHHHHHHhc
Q 017213 117 ASDYLEANIDLLDILIAGY 135 (375)
Q Consensus 117 ~v~Yl~~~~~il~~L~~gY 135 (375)
.|.||..||+++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999998774
No 26
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=40.16 E-value=61 Score=35.52 Aligned_cols=112 Identities=25% Similarity=0.322 Sum_probs=65.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhc
Q 017213 141 ALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLL 220 (375)
Q Consensus 141 al~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll 220 (375)
+.++|.=||.|..-+.+|-.=-+.. .+--|-.+|+.++-.|-...--+|..|+-.|=+.+ ..||
T Consensus 52 ~~i~ge~l~iC~~~~tCCt~emEer---------------l~~~a~~~feqllq~~s~~Lr~~l~s~~r~F~E~f-~ell 115 (563)
T KOG3821|consen 52 SEISGEHLRICPQGYTCCTREMEER---------------LQLQARDMFEQLLQDSSSVLRFVLASNARKFDEFF-LELL 115 (563)
T ss_pred CCCCCcceeeCCCCcCcccHHHHHH---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4467777777775444432111110 11234445555555555555555555433322222 2333
Q ss_pred c-CCCcchh----------hhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCc
Q 017213 221 E-SSNYITR----------RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRM 273 (375)
Q Consensus 221 ~-s~NYVTk----------RQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~ 273 (375)
+ ++||.+- -|+-.+++|+. ..++.-|+.+.+||.-+.|-+-.+-||||
T Consensus 116 ~~ae~~l~~mF~~tYg~ly~qn~~~~~dlF-----tel~~y~~~~~~nlee~l~eff~~Lf~~~ 174 (563)
T KOG3821|consen 116 RNAENSLNAMFSKTYGSLYPQNAELFNDLF-----TELKLYYVGSNVNLEETLNEFFARLFEVM 174 (563)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-----HHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 3 3343321 37788889998 67899999999999999999987777665
No 27
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.75 E-value=1.1e+02 Score=26.04 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=50.1
Q ss_pred CCCCCCchHHHHHHHHHHHhhc----hHHHHHHhC---CCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHH
Q 017213 58 NSESEPVSEACAQLTAEFFREN----TLRLLITCL---PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDI 130 (375)
Q Consensus 58 ~~e~ep~~e~~~qLa~e~~~~d----~l~~Li~~l---~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~ 130 (375)
+++..|.+...++||+..|.+. .+..|...| +.=++-..-.+-.+...|++. +..-.++.+..+-+++..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n---G~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN---GSERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH---S-HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHhh
Confidence 4555777888999999888843 445555555 455555555556666666662 223456677667777777
Q ss_pred HHHhccCchh-hHhHHHHHHHHH
Q 017213 131 LIAGYENTDM-ALHYGAMLRECI 152 (375)
Q Consensus 131 L~~gYe~~di-al~~G~mLReci 152 (375)
| ..|..+|- .-..|.-+|+-.
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 7 33432221 333444456543
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.02 E-value=1.4e+02 Score=29.08 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=49.6
Q ss_pred hhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCC--CcchhhhhHHHHHHHhccccc
Q 017213 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS--NYITRRQAVKLLGDILLDRSN 244 (375)
Q Consensus 167 ~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~--NYVTkRQslKLLgelLldr~N 244 (375)
+..|+...+.++=-|.-=|...+-.+++..+..-...-..-..+||+... ..++++ +|+ .-++..|+.+|-.+.+
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~-~~l~~~~~~~~--~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLS-SQLSSSDSELQ--YIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH--TT-HHHH-----HHHHHHHHHHHTSHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCcchH--HHHHHHHHHHhCcchh
Confidence 44555555555555555566666666664332222111222245554443 445543 343 5679999999966665
Q ss_pred hHHHHHhhcChhhHHHHHHHhh
Q 017213 245 SVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 245 ~~vM~rYis~~~NLkl~M~lL~ 266 (375)
..+ |+. .+.+..++.+|+
T Consensus 184 R~~---f~~-~~~v~~l~~iL~ 201 (312)
T PF03224_consen 184 RQV---FWK-SNGVSPLFDILR 201 (312)
T ss_dssp HHH---HHT-HHHHHHHHHHHH
T ss_pred HHH---HHh-cCcHHHHHHHHH
Confidence 555 444 888999999994
No 29
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.51 E-value=6.2e+02 Score=29.54 Aligned_cols=212 Identities=20% Similarity=0.277 Sum_probs=107.2
Q ss_pred HHHHHhhhccCCCCCCchHHHHHHHHHHH--hhc----hHHHHHHhCCCCChhhhh-hHHHHHHHHhhhc-----ccCcc
Q 017213 48 IRELKSILYGNSESEPVSEACAQLTAEFF--REN----TLRLLITCLPKLNLEARK-DATQVVANLQRQQ-----VHSKL 115 (375)
Q Consensus 48 L~~mK~il~G~~e~ep~~e~~~qLa~e~~--~~d----~l~~Li~~l~~L~fE~RK-d~~~If~~llr~~-----~~~~~ 115 (375)
+..||.++.---.+|+-|+..--+..... +.+ +|+.-....|+.+=+.+= .=..+..+..|.- -=-|.
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG 117 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcc
Confidence 44555554433333455555444554442 233 345555677887653321 1122333333322 12244
Q ss_pred chhHHhhh--chhHHHHHHHhccCchhhHhHHHHHHHHHHHHH--HHH-HHhcchhhhhhhhhccCCChhhhhhHHH---
Q 017213 116 IASDYLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRHQS--VAR-YVLESQHMKKFFDYIQLPNFDIAADAAA--- 187 (375)
Q Consensus 116 ~~v~Yl~~--~~~il~~L~~gYe~~dial~~G~mLRecir~e~--la~-~iL~s~~~~~fF~yi~~~~FdIasDAf~--- 187 (375)
.+..+|++ .||+++-|+. -+|.|+.|.- +-| -+|.--.+++-|+++--..=|+..++..
T Consensus 118 ~TLRFLckLkE~ELlepl~p-------------~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~ 184 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMP-------------SIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ 184 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc
Confidence 56788887 5898888864 3577776652 111 1111112333344332222333333333
Q ss_pred -------HHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHH
Q 017213 188 -------TFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRI 260 (375)
Q Consensus 188 -------TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl 260 (375)
-|--|++.-++.+-.||..|.|.+= .+|. .| +---+.++...-+ .|-.--.| ..+.
T Consensus 185 DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~-~L-------qlViVE~Irkv~~--~~p~~~~~------~i~~ 247 (948)
T KOG1058|consen 185 DPSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFND-SL-------QLVIVELIRKVCL--ANPAEKAR------YIRC 247 (948)
T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccH-HH-------HHHHHHHHHHHHh--cCHHHhhH------HHHH
Confidence 2445677777777788887777632 2331 00 0011122222211 12222222 3689
Q ss_pred HHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccccccCCCcccchhhheeeeeeeecCCC
Q 017213 261 LMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMESSKSIQIEAFHVFKLFAANQNK 324 (375)
Q Consensus 261 ~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~Iq~EAFhvFKvFvANp~K 324 (375)
+|++|. +.|..+.|||=--.-....+|.-
T Consensus 248 i~~lL~-----------------------------------stssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 248 IYNLLS-----------------------------------STSSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred HHHHHh-----------------------------------cCCchhhhhhcceEEEccCCHHH
Confidence 999999 99999999998766666666543
No 30
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.49 E-value=6.9e+02 Score=28.76 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=24.5
Q ss_pred HhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccC
Q 017213 86 TCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN 137 (375)
Q Consensus 86 ~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~ 137 (375)
..+.+||| |+|.+++=.+.|.| |.+|..||+.
T Consensus 107 rdIKqLD~-AKkNLTtSiT~L~~-------------------L~MLv~~ves 138 (793)
T KOG2180|consen 107 RDIKQLDF-AKKNLTTSITTLHR-------------------LHMLVTGVES 138 (793)
T ss_pred HHHHhhhH-HHhhHHHHHHHHHH-------------------HHHHHHHHHH
Confidence 34557888 88899888888877 6678888874
No 31
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.71 E-value=1.5e+02 Score=20.13 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHh
Q 017213 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQ 107 (375)
Q Consensus 71 La~e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~ll 107 (375)
-.+.+...+.+..|+..|..-+.+.++.++-...||-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999998888774
No 32
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=31.97 E-value=3.9e+02 Score=29.93 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhhccCCchhhhhHHHHHH--HHHhHHHHHhhhccCCCCCCchHHHHHHHH--HHHhhchHHHHHHhCCC
Q 017213 15 IVRQTRDLIIYANRSADVRESKREDKMAE--LCKNIRELKSILYGNSESEPVSEACAQLTA--EFFRENTLRLLITCLPK 90 (375)
Q Consensus 15 lVr~l~e~l~~L~~~~~~~~~K~e~k~ee--isK~L~~mK~il~G~~e~ep~~e~~~qLa~--e~~~~d~l~~Li~~l~~ 90 (375)
+|..|.|.|..=....+ ...+... ++| ++=.+.|+-..++.++|.+|+. ..-|++ ...-.|+|. ++.|-|.
T Consensus 374 lv~~L~eyLp~s~~~~~-~q~~~qr-ADeL~~~i~i~qtL~lMFReTE~e~sR--ln~L~A~kg~l~~~LL~-~Li~~P~ 448 (617)
T PF15087_consen 374 LVQTLHEYLPESRSKNG-LQNKSQR-ADELELCILIIQTLGLMFRETEVEPSR--LNTLAAKKGALFSNLLV-ILICEPQ 448 (617)
T ss_pred HHHHHHHhcccCcCccc-cccccch-HHHHHHHHHHHHHHHHHHhccccchhh--HHHHHhhhhhhHHHHHH-HHhcCcc
Confidence 47777776643221111 1111111 344 5566778888899999988865 333333 223334443 3334455
Q ss_pred CChhhhh-hHHHHHHHHhhhcccCccc--hhHHhhhchhHHHHH-HHh-----ccCchhhHhHHHHHHHHHHHHHHHHHH
Q 017213 91 LNLEARK-DATQVVANLQRQQVHSKLI--ASDYLEANIDLLDIL-IAG-----YENTDMALHYGAMLRECIRHQSVARYV 161 (375)
Q Consensus 91 L~fE~RK-d~~~If~~llr~~~~~~~~--~v~Yl~~~~~il~~L-~~g-----Ye~~dial~~G~mLRecir~e~la~~i 161 (375)
.+=-..- |+ +..+. ..-..+.... ..+|+-+-..+|.-+ +-| ..+.+-.++.|-|+|..=-|+.
T Consensus 449 ~p~~~~~~~~-~~~~~-~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~p~----- 521 (617)
T PF15087_consen 449 IPKSCPPFDI-QLVAD-SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSHPP----- 521 (617)
T ss_pred ccccCCcccc-ccccc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcCCc-----
Confidence 5411110 10 11000 0000000100 135665544443332 222 2245666778888885554444
Q ss_pred hcchhhhhhhhhccC-------CC---hhhhhhHHHHHHH---HHh--hChHHHHHHHHhhHHHHHHHHHHhh--ccC--
Q 017213 162 LESQHMKKFFDYIQL-------PN---FDIAADAAATFKE---LLT--RHKSTVAEFLSKNYDWFFAEYNSKL--LES-- 222 (375)
Q Consensus 162 L~s~~~~~fF~yi~~-------~~---FdIasDAf~Tfke---lLt--~Hk~~vaeFl~~Nyd~Ff~~yn~~L--l~s-- 222 (375)
+-.|..|+-- +. +=-.++|.--|+. |.+ .|.+..|+++..||.+=|.-|- +. ++.
T Consensus 522 -----~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI-~~p~lekKL 595 (617)
T PF15087_consen 522 -----LLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFI-KMPCLEKKL 595 (617)
T ss_pred -----HHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeee-cchhhHhhC
Confidence 3344444421 22 2234566555544 333 6778999999999988664443 22 222
Q ss_pred -CCcchhhhhHHHHHHHh
Q 017213 223 -SNYITRRQAVKLLGDIL 239 (375)
Q Consensus 223 -~NYVTkRQslKLLgelL 239 (375)
.-|=..+..++|++++|
T Consensus 596 P~~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 596 PPCYPITQPTLQLIHEVL 613 (617)
T ss_pred CCCCCCchHHHHHHHHHH
Confidence 56888889999999987
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=31.55 E-value=4.4e+02 Score=26.78 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCChhhh--hhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccCchhhHhHHHHHHHHHHHHHHH
Q 017213 81 LRLLITCLPKLNLEAR--KDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (375)
Q Consensus 81 l~~Li~~l~~L~fE~R--Kd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~~dial~~G~mLRecir~e~la 158 (375)
+..++..+...+++.. ..+......+++ ..++.+.+-|-..+-.+...+.
T Consensus 212 il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------------------------s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 212 ILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------------------------SSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp HHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHSSSHH--
T ss_pred HHHHHHhcccCChhhhhHHHHHHHHHHHhh--------------------------ccccHHHHHHHHHHHHhhcchH--
Q ss_pred HHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 017213 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (375)
Q Consensus 159 ~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgel 238 (375)
+....+..+..++..++-++..=|+.++..+..+++..+. ...+..|+ |..+++--+|+.++.+|..+
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~~~~------l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLILFF------LLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHHHHH------HHCSSSHHHHHHHHHHHHHH
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhhhhe------ecCCCChhHHHHHHHHHhhc
Q ss_pred hccccchHHHHHhhcChhhHHHHHHHhh
Q 017213 239 LLDRSNSVVMTRYVSSRENLRILMNLLR 266 (375)
Q Consensus 239 Lldr~N~~vM~rYis~~~NLkl~M~lL~ 266 (375)
. +++|.+.++.-|.
T Consensus 332 ~--------------~~~n~~~Il~eL~ 345 (526)
T PF01602_consen 332 A--------------NESNVKEILDELL 345 (526)
T ss_dssp ----------------HHHHHHHHHHHH
T ss_pred c--------------cccchhhHHHHHH
No 34
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.02 E-value=9e+02 Score=28.12 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChH
Q 017213 144 YGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (375)
Q Consensus 144 ~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~ 198 (375)
.+.|.|-|++|+.-.| ++|.++-+-++-|.=.|.|-|...+=||=+++|+
T Consensus 165 Il~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 165 ILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 5788999999999888 8999999999999999999999999999999984
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=29.02 E-value=1.4e+02 Score=22.56 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=32.2
Q ss_pred cCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 017213 175 QLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (375)
Q Consensus 175 ~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgel 238 (375)
+.++..+-..|...+-++ .++ ......- .++.++|..+|++++.-||.+
T Consensus 10 ~~~~~~vr~~a~~~L~~~--~~~------------~~~~~L~-~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGEL--GDP------------EAIPALI-ELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp TSSSHHHHHHHHHHHHCC--THH------------HHHHHHH-HHHTSSSHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHc--CCH------------hHHHHHH-HHHcCCCHHHHHHHHHHHHHh
Confidence 445666665555555522 111 2344443 678999999999999999976
No 36
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=28.82 E-value=1.3e+02 Score=27.52 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=11.9
Q ss_pred hhhh--HHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc
Q 017213 181 IAAD--AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240 (375)
Q Consensus 181 IasD--Af~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLl 240 (375)
+..| +..++.+++..+++++...-..+-+.|+ .+|...+ -..+-|++|+.|..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i-----~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFI-----ELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHH-----HHHHHcC--CChHHHHHHhhhcc
Confidence 3445 8999999999999999988777766666 3444433 22335666666653
No 37
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.76 E-value=2.5e+02 Score=27.43 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=58.1
Q ss_pred CChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccc------cchHHHHH
Q 017213 177 PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDR------SNSVVMTR 250 (375)
Q Consensus 177 ~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr------~N~~vM~r 250 (375)
........|+..+..|. +++....+-...=...+|++++ .++--.-+|.+..++|..++.+. ....++..
T Consensus 52 ~D~~~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~~---~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~ 127 (262)
T PF14500_consen 52 DDHACVQPALKGLLALV-KMKNFSPESAVKILRSLFQNVD---VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG 127 (262)
T ss_pred ccHhhHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHhCC---hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence 44555555566666666 3343322223333345566654 14444567888888888887553 13456666
Q ss_pred hh------cChhhHHHHHHHhhh---hccCCcchhHHHH
Q 017213 251 YV------SSRENLRILMNLLRV---RYFPRMHVEDIFY 280 (375)
Q Consensus 251 Yi------s~~~NLkl~M~lL~~---~~~~~~~~~~~~~ 280 (375)
|+ .||+||.++..++++ .|=..-++||+|=
T Consensus 128 ~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd 166 (262)
T PF14500_consen 128 FIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFD 166 (262)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 66 389999999988873 2223445666653
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=6.6e+02 Score=27.55 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=66.2
Q ss_pred HHHHHhhchHHHHHHhCCCCChhhhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHh--ccCchh---------
Q 017213 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDM--------- 140 (375)
Q Consensus 72 a~e~~~~d~l~~Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~g--Ye~~di--------- 140 (375)
++.+...+++..|+..|..=+|..||.++-..+|+.- ++..--+.||.... ++.-|+.- ..++++
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 3577888999999999999999999999999998875 22233466665542 22222211 122222
Q ss_pred -hHhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHH
Q 017213 141 -ALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAAT 188 (375)
Q Consensus 141 -al~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~T 188 (375)
.+-.|.+..+-=. +.++.+|=+...+.++-..=...|=||..-|+..
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~I 480 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKI 480 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHH
Confidence 2233333322111 4566666666666665544444555666555543
No 39
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.45 E-value=1.5e+02 Score=31.14 Aligned_cols=73 Identities=32% Similarity=0.451 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhh--HHHH
Q 017213 184 DAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSREN--LRIL 261 (375)
Q Consensus 184 DAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~N--Lkl~ 261 (375)
|-...|+..+......| .+||- .|.+|-++|+++-|..||--++.+|.++..+.....+.- .|| -+.+
T Consensus 127 ~f~~vf~~~~~~~~~~v----~~~~~-LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~w-----aentcs~r~ 196 (432)
T COG5231 127 EFLSVFKQMLKDNTSYV----ESNYL-LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEW-----AENTCSRRF 196 (432)
T ss_pred HHHHHHHHHccCchHHH----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-----HHhhHHHHH
Confidence 34445555555555444 45666 566777899999999999999999999998887655542 244 3566
Q ss_pred HHHhh
Q 017213 262 MNLLR 266 (375)
Q Consensus 262 M~lL~ 266 (375)
|-+|+
T Consensus 197 ~e~l~ 201 (432)
T COG5231 197 MEILQ 201 (432)
T ss_pred HHHHH
Confidence 77777
No 40
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=25.91 E-value=1.8e+02 Score=26.55 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=38.1
Q ss_pred HHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhh---HHHHHHHHHHhhccCCCc
Q 017213 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKN---YDWFFAEYNSKLLESSNY 225 (375)
Q Consensus 155 e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~N---yd~Ff~~yn~~Ll~s~NY 225 (375)
.-+.+|+.+++.|+++++|++.+.|.=...-+.+..|. ..+.+||.++ -..+++.+| .++.-+++
T Consensus 22 ~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~-----~~l~~yL~~~gldv~~~i~~i~-~~l~~~~~ 89 (179)
T PF06757_consen 22 DIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEV-----KALLDYLESAGLDVYYYINQIN-DLLGLPPL 89 (179)
T ss_pred HHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHH-----HHHHHHHHHCCCCHHHHHHHHH-HHHcCCcC
Confidence 34567899999999999999977765333222222222 1233666642 233556666 55554444
No 41
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.15 E-value=1.6e+02 Score=26.85 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHHhHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 017213 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (375)
Q Consensus 41 ~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~e~~~~d~ 80 (375)
.+|+.|.|..|-.-+-++.=+.|+.+...+|++++-..|.
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 5899999999998887766677888888999998877664
No 42
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.37 E-value=1.8e+02 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=17.6
Q ss_pred CCCCCCCCC----CChHHHHHHHHHHHHHhh
Q 017213 1 MKGLFKSKP----RTPVDIVRQTRDLIIYAN 27 (375)
Q Consensus 1 M~flFkkk~----KtP~ElVr~l~e~l~~L~ 27 (375)
|..||+++. .|+.|-++.+++.+..|+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~ 31 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD 31 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 788997542 356666666666665554
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.74 E-value=9.4e+02 Score=26.43 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=82.6
Q ss_pred HHHHHHHHhhchHHHHHHhCCCCChh-hhhhHHHHHHHHhhhcccCccchhHHhhhchhHHHHHHHhccC------chhh
Q 017213 69 AQLTAEFFRENTLRLLITCLPKLNLE-ARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN------TDMA 141 (375)
Q Consensus 69 ~qLa~e~~~~d~l~~Li~~l~~L~fE-~RKd~~~If~~llr~~~~~~~~~v~Yl~~~~~il~~L~~gYe~------~dia 141 (375)
.+.++++.+.+.|.-|...+..-+=+ -||.++=+.+|+.. |+ ...++++..- .++-.|+.+++. .+.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G~-~~qiqaVida-~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA---GN-QEQIQAVIDA-NLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---CC-HHHHHHHHHc-ccHHHHHHHHhccchHHHHHHH
Confidence 45788999999998888888877777 57778888888876 22 2346666542 445555555443 4556
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHh
Q 017213 142 LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLT 194 (375)
Q Consensus 142 l~~G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt 194 (375)
-..++..-.+. +...+||.+..++.-|-+++..++=+|..=++.++.-+|.
T Consensus 386 waIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 386 WAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 66666666666 5556789999999999999988887776655555555543
No 44
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.47 E-value=1.1e+03 Score=28.86 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHH-HHHhHHHHHhhh-ccCCCCCCchHHHHHHHHHHHh-hchHHH
Q 017213 7 SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSIL-YGNSESEPVSEACAQLTAEFFR-ENTLRL 83 (375)
Q Consensus 7 kk~KtP~ElVr~l~e~l~~L~~~~~~~~~K~e~k~ee-isK~L~~mK~il-~G~~e~ep~~e~~~qLa~e~~~-~d~l~~ 83 (375)
+++|-|.|++-.+.+. .+++.. .+.=+++. +.++-.++.++- .|.+ --+.| ..+++ +++...
T Consensus 862 ~SqkDPkEyLP~L~el-~~m~~~------~rkF~ID~~L~ry~~AL~hLs~~~~~----~~~e~----~n~I~kh~Ly~~ 926 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNEL-KKMETL------LRKFKIDDYLKRYEDALSHLSECGET----YFPEC----KNYIKKHGLYDE 926 (1265)
T ss_pred HhccChHHHHHHHHHH-hhchhh------hhheeHHHHHHHHHHHHHHHHHcCcc----ccHHH----HHHHHhcccchh
Confidence 5678899988877773 233321 11111333 555555555553 3311 11112 22222 232222
Q ss_pred HHHhCCCCChhhhhhHHHHHHHHhhhcccCccchh
Q 017213 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIAS 118 (375)
Q Consensus 84 Li~~l~~L~fE~RKd~~~If~~llr~~~~~~~~~v 118 (375)
..-|-+=+-|.+|++..+|+..+++...++--++
T Consensus 927 -aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 927 -ALALYKPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred -hhheeccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 2223345677788888888887776655544444
No 45
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=21.74 E-value=4e+02 Score=31.79 Aligned_cols=126 Identities=24% Similarity=0.337 Sum_probs=80.2
Q ss_pred Hhcchhhhhhhhhc--cCCChhhhhhHHHHHHHHHhhChHHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 017213 161 VLESQHMKKFFDYI--QLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (375)
Q Consensus 161 iL~s~~~~~fF~yi--~~~~FdIasDAf~TfkelLt~Hk~~vaeFl~~Nyd~Ff~~yn~~Ll~s~NYVTkRQslKLLgel 238 (375)
+|.++.+....+++ +.|++|+-++.+. .+++|+.-..+.|+..|.-|-+-.. -|=++..+|.++
T Consensus 40 fl~dK~~e~~~K~i~kkfp~id~~~~~~~----~~~~~~~e~~~~L~~~Y~tf~D~~d----------f~d~v~elL~~i 105 (1116)
T PF09735_consen 40 FLSDKFIESAIKYIVKKFPNIDIRSNGLE----PLQNRKKEILKSLSPYYYTFVDLMD----------FRDHVYELLTTI 105 (1116)
T ss_dssp GGT-TTTHHHHHHHHHHTT-------TTH----HHHHTHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHhCCCCCcccccch----HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHh
Confidence 34444444444444 3599999887543 4568888889999999998877554 344778888887
Q ss_pred ------hccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCcccccccc-ccc
Q 017213 239 ------LLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKIS-LHM 301 (375)
Q Consensus 239 ------Lldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 301 (375)
|.-.-|+.+...|++=--|.-.||.|++ |--||--|=-.|-.||+..+|...-+|-.++ +++
T Consensus 106 ~~~~~~ldi~~N~~lt~~yLdL~v~yv~~~llls-ri~drK~il~lyn~a~~~~~g~~e~~~~Rl~q~i~ 174 (1116)
T PF09735_consen 106 DACQITLDITLNFDLTKAYLDLVVNYVSVMLLLS-RIEDRKAILGLYNAAYEMQHGQSEPSFPRLGQMIL 174 (1116)
T ss_dssp HHHT----TTTSHHHHHHHHHHHHHHHHHHHHHH-T-TTHHHHHHHHHHHHHTTSSS--TTHHHHHHHHH
T ss_pred hhceeeeccccCHHHHHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4456788888888888888888888887 3334444555788999999986655777666 444
No 46
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.76 E-value=1.4e+03 Score=26.93 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=54.2
Q ss_pred chhHHHHHHHhccCchhhHhHHHHHHHHHHHHHHH--HHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChH---
Q 017213 124 NIDLLDILIAGYENTDMALHYGAMLRECIRHQSVA--RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS--- 198 (375)
Q Consensus 124 ~~~il~~L~~gYe~~dial~~G~mLRecir~e~la--~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~--- 198 (375)
-|+++.-|++-....|+-..-|.. +- -|.-.- |+...|+.+|.=.+|+-..-=+--+|-|.+--++.++|..
T Consensus 124 WptLl~dL~~~ls~~D~~~~~gVL-~t--ahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~ 200 (960)
T KOG1992|consen 124 WPTLLPDLVARLSSGDFNVINGVL-VT--AHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAA 200 (960)
T ss_pred hHHHHHHHHhhccccchHHHHHHH-HH--HHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchh
Confidence 488888888888877766555532 11 111111 2345566666666655221111122233333333333332
Q ss_pred ------------------HH----HHHHHhhHHHHHHHHHHhhccCCC
Q 017213 199 ------------------TV----AEFLSKNYDWFFAEYNSKLLESSN 224 (375)
Q Consensus 199 ------------------~v----aeFl~~Nyd~Ff~~yn~~Ll~s~N 224 (375)
++ -||+++|-+.|...|. ++++.+|
T Consensus 201 ~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~-k~l~~~~ 247 (960)
T KOG1992|consen 201 ALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFH-KLLTYDN 247 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHH-HHHhccC
Confidence 22 3899999999999997 8887655
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.73 E-value=67 Score=24.34 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=40.7
Q ss_pred hhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhhhhccCCcchhHHHHHHHhhhcCCCccccccc
Q 017213 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKI 297 (375)
Q Consensus 218 ~Ll~s~NYVTkRQslKLLgelLldr~N~~vM~rYis~~~NLkl~M~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
.|..++|.-.|+.++..||++ .+++-+..+..+|+
T Consensus 7 ~l~~~~~~~vr~~a~~~L~~~--------------~~~~~~~~L~~~l~------------------------------- 41 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALGEL--------------GDPEAIPALIELLK------------------------------- 41 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCC--------------THHHHHHHHHHHHT-------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHc--------------CCHhHHHHHHHHHc-------------------------------
Confidence 344899999999999999933 45677888888888
Q ss_pred ccccCCCcccchhhheeeeee
Q 017213 298 SLHMESSKSIQIEAFHVFKLF 318 (375)
Q Consensus 298 ~~~~d~sk~Iq~EAFhvFKvF 318 (375)
|++..++..|.....-+
T Consensus 42 ----d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 42 ----DEDPMVRRAAARALGRI 58 (88)
T ss_dssp ----SSSHHHHHHHHHHHHCC
T ss_pred ----CCCHHHHHHHHHHHHHh
Confidence 88888888887666544
No 48
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=20.28 E-value=1.1e+02 Score=29.69 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCChhhhhhHHHHHHHHHhhChHHHH---HHHHhhHHHHHH
Q 017213 145 GAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---EFLSKNYDWFFA 213 (375)
Q Consensus 145 G~mLRecir~e~la~~iL~s~~~~~fF~yi~~~~FdIasDAf~TfkelLt~Hk~~va---eFl~~Nyd~Ff~ 213 (375)
=.+||-|+-++.-.|.+||.. +-+++++.+.++. ++|..++..||.
T Consensus 36 lg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 36 LGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 357899999999999999884 3356677776665 666678777776
Done!