Query 017214
Match_columns 375
No_of_seqs 216 out of 1617
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03036 glutamine synthetase; 100.0 3E-100 6E-105 768.9 36.1 375 1-375 1-375 (432)
2 PLN02284 glutamine synthetase 100.0 7.2E-84 1.6E-88 639.6 32.9 302 74-375 14-315 (354)
3 COG0174 GlnA Glutamine synthet 100.0 7E-75 1.5E-79 585.6 28.5 298 62-375 4-321 (443)
4 TIGR00653 GlnA glutamine synth 100.0 9.7E-72 2.1E-76 569.5 27.0 296 63-375 2-336 (460)
5 PRK09469 glnA glutamine synthe 100.0 6.3E-71 1.4E-75 564.4 28.3 298 62-375 4-344 (469)
6 TIGR03105 gln_synth_III glutam 100.0 8.3E-70 1.8E-74 552.2 26.1 292 65-375 2-320 (435)
7 KOG0683 Glutamine synthetase [ 100.0 2.6E-59 5.6E-64 449.9 19.8 312 62-375 15-330 (380)
8 PF00120 Gln-synt_C: Glutamine 100.0 4E-58 8.7E-63 438.4 14.7 205 163-375 1-224 (259)
9 COG3968 Uncharacterized protei 99.6 3E-15 6.4E-20 148.4 11.9 169 182-360 214-412 (724)
10 PF03951 Gln-synt_N: Glutamine 99.5 1.6E-14 3.4E-19 115.4 6.6 75 78-157 2-84 (84)
11 TIGR02050 gshA_cyan_rel unchar 98.4 3.3E-06 7.1E-11 82.2 12.5 129 185-348 1-156 (287)
12 PRK13517 carboxylate-amine lig 98.2 1E-05 2.3E-10 81.5 11.6 132 183-348 10-167 (373)
13 PRK13516 gamma-glutamyl:cystei 98.1 3.1E-05 6.8E-10 78.1 12.9 132 183-348 11-168 (373)
14 PLN02611 glutamate--cysteine l 98.0 7E-05 1.5E-09 77.6 13.3 150 168-348 52-246 (482)
15 PRK13515 carboxylate-amine lig 98.0 6.6E-05 1.4E-09 75.7 12.0 131 183-348 5-161 (371)
16 PF04107 GCS2: Glutamate-cyste 97.8 6.5E-05 1.4E-09 73.1 8.9 97 246-348 34-159 (288)
17 PRK13518 carboxylate-amine lig 97.8 0.00011 2.3E-09 73.7 9.1 131 184-348 13-169 (357)
18 TIGR02048 gshA_cyano glutamate 97.6 0.00051 1.1E-08 69.4 11.4 94 248-348 31-150 (376)
19 TIGR01436 glu_cys_lig_pln glut 97.5 0.0025 5.5E-08 65.8 15.5 141 180-348 18-203 (446)
20 TIGR03444 gshA_related glutama 96.3 0.024 5.2E-07 57.5 9.9 91 255-349 69-187 (390)
21 COG2170 Uncharacterized conser 95.6 0.018 3.8E-07 57.1 5.0 89 251-346 43-157 (369)
22 COG3572 GshA Gamma-glutamylcys 86.3 2.2 4.8E-05 43.3 7.0 104 248-359 90-222 (456)
23 cd04869 ACT_GcvR_2 ACT domains 82.6 2.9 6.2E-05 32.0 4.9 65 230-296 11-81 (81)
24 PF06877 RraB: Regulator of ri 82.0 9.9 0.00022 30.8 8.2 94 167-291 3-98 (104)
25 PF13740 ACT_6: ACT domain; PD 80.1 4.4 9.6E-05 31.1 5.1 62 230-294 14-75 (76)
26 cd04872 ACT_1ZPV ACT domain pr 71.6 6.8 0.00015 30.8 4.2 67 230-297 13-79 (88)
27 cd04870 ACT_PSP_1 CT domains f 70.1 11 0.00023 28.7 4.9 65 230-296 11-75 (75)
28 PRK00194 hypothetical protein; 66.4 11 0.00023 29.6 4.4 65 230-295 15-79 (90)
29 KOG0558 Dihydrolipoamide trans 65.7 5.7 0.00012 39.7 3.1 52 227-297 251-302 (474)
30 PRK02471 bifunctional glutamat 60.9 13 0.00028 41.2 5.2 16 183-198 18-33 (752)
31 cd04893 ACT_GcvR_1 ACT domains 60.0 26 0.00057 26.8 5.4 64 229-295 12-75 (77)
32 COG4451 RbcS Ribulose bisphosp 56.2 13 0.00028 31.6 3.2 49 52-110 61-109 (127)
33 COG3364 Zn-ribbon containing p 51.2 8.8 0.00019 31.7 1.4 23 240-263 55-77 (112)
34 smart00874 B5 tRNA synthetase 50.8 46 0.00099 24.8 5.3 47 234-290 23-71 (71)
35 TIGR02778 ligD_pol DNA polymer 49.9 1.4E+02 0.0031 28.6 9.6 94 240-343 95-195 (245)
36 PF03484 B5: tRNA synthetase B 48.2 49 0.0011 25.0 5.1 47 233-290 22-70 (70)
37 PRK11191 RNase E inhibitor pro 45.4 2.1E+02 0.0045 25.0 9.6 93 168-291 12-107 (138)
38 PRK11589 gcvR glycine cleavage 43.7 59 0.0013 29.8 5.8 63 229-297 106-178 (190)
39 PF14395 COOH-NH2_lig: Phage p 42.4 39 0.00084 32.5 4.5 56 259-316 52-108 (261)
40 cd04863 MtLigD_Pol_like MtLigD 39.5 1.8E+02 0.0039 27.7 8.4 81 253-343 100-183 (231)
41 PF09904 HTH_43: Winged helix- 38.7 59 0.0013 26.3 4.3 24 165-194 33-56 (90)
42 PF04468 PSP1: PSP1 C-terminal 35.8 49 0.0011 26.4 3.5 60 229-293 25-84 (88)
43 PF09845 DUF2072: Zn-ribbon co 32.4 21 0.00045 30.9 0.8 20 243-263 83-102 (131)
44 cd04875 ACT_F4HF-DF N-terminal 31.9 58 0.0013 24.4 3.2 60 230-291 11-73 (74)
45 cd04866 LigD_Pol_like_3 LigD_P 31.5 4.6E+02 0.0099 24.8 10.9 55 254-315 92-146 (223)
46 PRK13011 formyltetrahydrofolat 31.2 87 0.0019 30.6 5.1 66 229-296 18-85 (286)
47 PF12224 Amidoligase_2: Putati 30.3 2.6E+02 0.0057 25.9 8.1 73 257-345 77-149 (252)
48 COG3285 Predicted eukaryotic-t 27.9 2.1E+02 0.0045 28.2 6.9 71 239-316 104-179 (299)
49 cd04871 ACT_PSP_2 ACT domains 26.3 1.4E+02 0.0031 23.3 4.7 61 229-294 11-82 (84)
50 cd04861 LigD_Pol_like LigD_Pol 25.9 3.7E+02 0.0079 25.5 8.1 94 241-344 80-180 (227)
51 PRK06027 purU formyltetrahydro 25.3 1.5E+02 0.0032 28.9 5.6 67 229-296 17-85 (286)
52 COG4519 Uncharacterized protei 24.8 2E+02 0.0043 23.0 5.0 24 165-194 34-57 (95)
53 PF00311 PEPcase: Phosphoenolp 24.1 1.1E+02 0.0025 34.2 5.0 54 242-295 423-482 (794)
54 cd04865 LigD_Pol_like_2 LigD_P 22.9 6.6E+02 0.014 23.8 10.9 93 240-342 80-179 (228)
55 PRK05972 ligD ATP-dependent DN 21.5 9.7E+02 0.021 27.3 11.5 93 239-341 664-763 (860)
56 KOG0680 Actin-related protein 21.0 97 0.0021 31.1 3.3 100 74-178 236-345 (400)
57 TIGR00629 uvde UV damage endon 20.6 8.4E+02 0.018 24.2 10.2 94 229-346 52-147 (312)
58 TIGR02776 NHEJ_ligase_prk DNA 20.2 9E+02 0.02 26.0 10.6 80 254-342 390-472 (552)
No 1
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=2.7e-100 Score=768.91 Aligned_cols=375 Identities=89% Similarity=1.453 Sum_probs=349.3
Q ss_pred CcccCCccccceeccccccCCCCCchhhhhhhHHHHHhhccCcccccceEEEEeecCcchHHHHHHHHhccCCCCCCeeE
Q 017214 1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII 80 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 80 (375)
|||||+||+||||||+|.++.|.++++++|+|+++||+|++..+...+|+++++.+..+.++.++.+++....+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T PLN03036 1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII 80 (432)
T ss_pred CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence 99999999999999999999999999999999999999998877789999999877665677888898888777778999
Q ss_pred EEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecCCCCCCeEEEEEEeecCCCc
Q 017214 81 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 160 (375)
Q Consensus 81 ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~Pw~~~~~a~Vlcd~~~~dG~ 160 (375)
+||||||++|.|||||+|++.+|++.++++|+|+||||++|+.+++++|++|+||.++++||+++++++|+||+|++||+
T Consensus 81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~ 160 (432)
T PLN03036 81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 160 (432)
T ss_pred EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876799999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHH
Q 017214 161 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240 (375)
Q Consensus 161 P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~ 240 (375)
|++.|||++|++++++++..|+++++|+|+|||||+.+.+++.|||.++.|.++++||+..+.+..+.++++++|+++|+
T Consensus 161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~ 240 (432)
T PLN03036 161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240 (432)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445567776667788999999888887778999999999999
Q ss_pred HcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeeccccccc
Q 017214 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE 320 (375)
Q Consensus 241 ~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~ 320 (375)
++||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||++|||||||+.++|+|||||+|+||++++++
T Consensus 241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~ 320 (432)
T PLN03036 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE 320 (432)
T ss_pred HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999998755899999999999997766
Q ss_pred CCHHHHHHHHHHHhHhhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 321 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 321 ~g~n~~~~~iaGl~L~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
||.++|+++++||+|+|+++|+||++||||||++++|||++.+++||++||+++|
T Consensus 321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asI 375 (432)
T PLN03036 321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSI 375 (432)
T ss_pred chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceE
Confidence 7889999999996699999999999999999999999955559999999999975
No 2
>PLN02284 glutamine synthetase
Probab=100.00 E-value=7.2e-84 Score=639.64 Aligned_cols=302 Identities=80% Similarity=1.408 Sum_probs=278.6
Q ss_pred CCCCeeEEEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecCCCCCCeEEEEEE
Q 017214 74 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICD 153 (375)
Q Consensus 74 p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~Pw~~~~~a~Vlcd 153 (375)
++.+++++||||||+.|+|++||++++++|++.+++.++|+||||++|+..++++|++|+||.++++||.++++++|+||
T Consensus 14 ~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~Pw~~~~~~~vlcd 93 (354)
T PLN02284 14 DSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCD 93 (354)
T ss_pred CcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEECCCCCCCeEEEEEE
Confidence 44478999999999999999999999999999999889999999999988889999999999999999987668999999
Q ss_pred eecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHH
Q 017214 154 TYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIAD 233 (375)
Q Consensus 154 ~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~ 233 (375)
++++||+|++.|||++|+++++++++.|+++++|+|+|||||+.+..++.|++.++.+.++++||+..+.+..+.+++++
T Consensus 94 v~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 173 (354)
T PLN02284 94 AYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVD 173 (354)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999986533445665545677888898888876666899999
Q ss_pred HHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeee
Q 017214 234 AHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 313 (375)
Q Consensus 234 ~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~S 313 (375)
+|+++|+++||+|+++|||+|||||||++.|.++|+|||+++++|++||+||++||++|||||||+.++++|||||+|+|
T Consensus 174 ~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~~GSGmH~H~S 253 (354)
T PLN02284 174 AHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYS 253 (354)
T ss_pred HHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCCccCcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885479999999999
Q ss_pred cccccccCCHHHHHHHHHHHhHhhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 314 TKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 314 L~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
||++++++|.|+|+++++|+.|+|+++|+||++||||||+|++|||.+.+++||.+||+++|
T Consensus 254 L~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~i 315 (354)
T PLN02284 254 TKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASI 315 (354)
T ss_pred hhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeE
Confidence 99865557899999999999999999999999999999999999995448999999999975
No 3
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-75 Score=585.56 Aligned_cols=298 Identities=28% Similarity=0.432 Sum_probs=259.8
Q ss_pred HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC--CCccccCCCC-CCCCCCCccEEEEeEe--
Q 017214 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL--PKWNYDGSST-GQAPGEDSEVILYPQA-- 136 (375)
Q Consensus 62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~--~~~~fDgss~-g~~~~~~~D~~l~PD~-- 136 (375)
+.+..+++.. ++..|+++|+|+.|+ +|||+.++..|.+.+... .+..||||++ ||..++++|++|+||+
T Consensus 4 ~~~~~~~~~~-----~V~~v~~~f~D~~G~-~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T 77 (443)
T COG0174 4 EDVLKLLKEN-----GVKFVDLRFTDLNGV-LRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLST 77 (443)
T ss_pred HHHHHHHHhC-----CceEEEEEEECCCCC-eeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccCc
Confidence 3445555554 689999999999998 888888755544455443 4678999999 8877799999999998
Q ss_pred ceecCCCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcc-eEeeeeeEEEeccCCCCCCCCCCCCCCCCCC
Q 017214 137 IFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVP-WFGIEQEYTLLQQNVKWPLGWPVGAYPGPQG 215 (375)
Q Consensus 137 l~~~Pw~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~-~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~ 215 (375)
++++||.++++|+|+||+++++|+|++.|||++|+|+++++++.|+.+ ++|+|+|||||+.+...+.+ +.+.+++
T Consensus 78 ~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~----~~~~~~~ 153 (443)
T COG0174 78 LVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDG----GRPADKG 153 (443)
T ss_pred eeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCccc----CccCCCC
Confidence 999999997899999999999999999999999999999999999985 99999999999975321111 4678899
Q ss_pred CCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 017214 216 PYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 295 (375)
Q Consensus 216 ~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFm 295 (375)
+||+..++++ ..+++++|+.+|+++||++|++|||+|||||||++++.++|++||+++++|++||+||++||++||||
T Consensus 154 ~yf~~~~~~~--~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFM 231 (443)
T COG0174 154 GYFDVAPLDE--AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFM 231 (443)
T ss_pred cccCcccccc--HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 9999999998 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCceeeeeeecccccc------cCC----HHHHHHHHHHHhHhhHHHhhccc---cccccCC-CCCCCCCCC
Q 017214 296 PKPIEGDWNGAGCHTNYSTKSMRE------EGG----YETIKKAILNLSLRHKEHISAYG---EGNERRL-TGKHETASI 361 (375)
Q Consensus 296 pKP~~~~~~GsG~HvH~SL~~~~~------~~g----~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl-~~~~~ap~~ 361 (375)
|||+.++ +|||||+|+|||+.++ ++| +..+++||||| |+|+++++|++ +|||||| +|..|||+
T Consensus 232 pKP~~g~-~GSGMH~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP~- 308 (443)
T COG0174 232 PKPFFGD-NGSGMHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAPT- 308 (443)
T ss_pred CCCCCCC-CCCceeEEEEEecCCCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCcc-
Confidence 9999995 9999999999997421 111 34468999999 99999999998 4999999 56366999
Q ss_pred CceeeecCCCCCCC
Q 017214 362 DSFSWVCSEDGPIF 375 (375)
Q Consensus 362 ~~~~WG~~NRsaa~ 375 (375)
+++||.+||||+|
T Consensus 309 -~~~wg~~NRsa~i 321 (443)
T COG0174 309 -YIAWGVRNRSASV 321 (443)
T ss_pred -hhcccccCcceEE
Confidence 9999999999985
No 4
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=9.7e-72 Score=569.55 Aligned_cols=296 Identities=24% Similarity=0.336 Sum_probs=254.6
Q ss_pred HHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEeEe--
Q 017214 63 RLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA-- 136 (375)
Q Consensus 63 ~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~-~--~~~~fDgss~-g~~~~~~~D~~l~PD~-- 136 (375)
++.++|+.. ++..|+++|+|++|+ +|||.. |++.+.+ . .|++||++++ |+...+++|++|+||+
T Consensus 2 e~~~~l~~~-----~i~~v~~~~~Dl~G~-~rgk~v----p~~~~~~~~~~~G~~~~~~~~~~~~~~~~~D~~l~PD~~T 71 (460)
T TIGR00653 2 EVFKLIKEE-----NVKFVDLRFTDIKGK-PQHVEI----PASALDKEAFEEGIMFDGSSIRGFQGIEESDMLLKPDPST 71 (460)
T ss_pred hHHHHHHhC-----CCcEEEEEEECCCCC-EeeEEE----eHHHhhHHHhcCCeecccccccccccCCCCcEEEeccCCc
Confidence 567777764 578999999998887 888877 5666653 2 5789999887 7767788999999998
Q ss_pred ceecCCCCCCeEEEEEEeecC-CCccCCCCHHHHHHHHHHhhh-cCCCcceEeeeeeEEEeccCCCCCC-----------
Q 017214 137 IFKDPFRGGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSK-VSAEVPWFGIEQEYTLLQQNVKWPL----------- 203 (375)
Q Consensus 137 l~~~Pw~~~~~a~Vlcd~~~~-dG~P~~~~PR~vL~~~l~~l~-~~G~~~~vg~E~EF~L~~~~~~~~~----------- 203 (375)
++++||.++++++|+||+++. ||+|++.|||++|++++++++ +.|+++++|+|+|||||+.+.....
T Consensus 72 l~~~pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~ 151 (460)
T TIGR00653 72 AVIDPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSE 151 (460)
T ss_pred ceeccCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccc
Confidence 999999765799999999998 999999999999999999999 8999999999999999986432100
Q ss_pred --------CCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHH
Q 017214 204 --------GWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIW 275 (375)
Q Consensus 204 --------g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~ 275 (375)
++ .+..+.+.+.||+..+.+. ..+++++|.++|+++||+|+++|+|+|||||||++.|+++|+|||+++
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~ 228 (460)
T TIGR00653 152 EGRWNEESGN-RGYKPRDKGGYFPVAPTDT--AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQ 228 (460)
T ss_pred cccccccCCc-CCCcccCCccccCCCCccc--HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHH
Confidence 10 0223455556788777776 678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc-----cC----CHHHHHHHHHHHhHhhHHHhhccc-
Q 017214 276 CSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-----EG----GYETIKKAILNLSLRHKEHISAYG- 345 (375)
Q Consensus 276 ~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~-----~~----g~n~~~~~iaGl~L~h~~al~a~~- 345 (375)
++|++||+||++||++|||||||+.+ ++|||||+|+||||..+ ++ -+.+.++||||| |+|+++++||+
T Consensus 229 ~~k~~ik~vA~~~G~~ATFmpKP~~~-~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~ 306 (460)
T TIGR00653 229 TYKYVVKNVARKHGKTATFMPKPLFG-DNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTN 306 (460)
T ss_pred HHHHHHHHHHHHhCCEEEEecccCCC-CCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhc
Confidence 99999999999999999999999999 59999999999998311 00 124568999999 99999999997
Q ss_pred --cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 346 --EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 346 --~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+||||||+|++|||+ +++||.+||+++|
T Consensus 307 PtvNSYkRl~p~~~ap~--~~~WG~~NR~a~i 336 (460)
T TIGR00653 307 PTVNSYKRLVPGYEAPV--YLAYSARNRSALI 336 (460)
T ss_pred CCCcchhhcCCCCcCcc--eeecccCCCCceE
Confidence 499999999999999 9999999999985
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=6.3e-71 Score=564.42 Aligned_cols=298 Identities=21% Similarity=0.306 Sum_probs=252.2
Q ss_pred HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEeEe-
Q 017214 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA- 136 (375)
Q Consensus 62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~-~--~~~~fDgss~-g~~~~~~~D~~l~PD~- 136 (375)
+++.++++.. ++..|+++|+|++|+ +|||+. |++.+++ . .|..||++++ |+...+++|++|+||+
T Consensus 4 ~~~~~~l~~~-----~i~~v~~~~~Dl~G~-~rgk~i----p~~~~~~~~~~~G~~f~~~~~~g~~~~~~~D~~l~PD~~ 73 (469)
T PRK09469 4 EHVLTMLNEH-----EVKFVDLRFTDTKGK-EQHVTI----PAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDAS 73 (469)
T ss_pred HHHHHHHHhC-----CCCEEEEEEECCCCC-EeEEEE----EHHHhhHHHhcCCceeccccccccCcCCCCCEEEEEcCC
Confidence 4677788765 578888898888887 888777 4666653 2 5789999987 7767789999999998
Q ss_pred -ceecCCCCCCeEEEEEEeecCC-CccCCCCHHHHHHHHHHhhhcCCC--cceEeeeeeEEEeccCCC--CCC-------
Q 017214 137 -IFKDPFRGGNNILVICDTYTPA-GEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNVK--WPL------- 203 (375)
Q Consensus 137 -l~~~Pw~~~~~a~Vlcd~~~~d-G~P~~~~PR~vL~~~l~~l~~~G~--~~~vg~E~EF~L~~~~~~--~~~------- 203 (375)
++++||.+.++|+|+||+++.+ |+|++.|||++|+|+++++++.|+ ++++|+|+|||||++... .+.
T Consensus 74 Tl~~~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~ 153 (469)
T PRK09469 74 TAVLDPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAID 153 (469)
T ss_pred ccEECCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccc
Confidence 9999996546999999999985 899999999999999999999999 999999999999985420 000
Q ss_pred ----CCCC---------CCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCC-CCcEEEEcCCChHHH
Q 017214 204 ----GWPV---------GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGID 269 (375)
Q Consensus 204 ----g~~~---------~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~g-pGQ~Ei~l~~~~~l~ 269 (375)
-|+. +..+...+.||+..+.+. ..+++++|.++|+.+||+|+++|||+| ||||||++.|.++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~ 231 (469)
T PRK09469 154 DIEAAWNSGTKYEGGNKGHRPGVKGGYFPVPPVDS--SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTK 231 (469)
T ss_pred cchhcccccccccCCCCCCccCCCccccCCCcccc--hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHH
Confidence 0000 112344455788888877 789999999999999999999999999 599999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc-------cCC-HHHHHHHHHHHhHhhHHHh
Q 017214 270 AGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-------EGG-YETIKKAILNLSLRHKEHI 341 (375)
Q Consensus 270 aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~-------~~g-~n~~~~~iaGl~L~h~~al 341 (375)
|||+++++|++||+||++||++|||||||+.+ .+|||||+|+|||+..+ .+| +...++||||| |+|++++
T Consensus 232 aaD~~~~~k~~vk~va~~~g~~atFmpKP~~~-~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l 309 (469)
T PRK09469 232 KADEIQIYKYVVHNVAHAFGKTATFMPKPMFG-DNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAI 309 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEeccccCC-CCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999 59999999999998310 011 23457999999 9999999
Q ss_pred hccc---cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 342 SAYG---EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 342 ~a~~---~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+||+ +||||||+|++|||+ +++||++||+++|
T Consensus 310 ~a~~~PtvNSYkRl~p~~~ap~--~~~WG~~NR~a~i 344 (469)
T PRK09469 310 NALANPTTNSYKRLVPGYEAPV--MLAYSARNRSASI 344 (469)
T ss_pred HhhhcCCCchHhhcCCCCcCcC--cceecCCCCcceE
Confidence 9997 499999999999999 9999999999985
No 6
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=8.3e-70 Score=552.20 Aligned_cols=292 Identities=18% Similarity=0.201 Sum_probs=244.4
Q ss_pred HHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC--CCccccCCCCC--CCCCCCccEEEEeEe--ce
Q 017214 65 EDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL--PKWNYDGSSTG--QAPGEDSEVILYPQA--IF 138 (375)
Q Consensus 65 ~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~--~~~~fDgss~g--~~~~~~~D~~l~PD~--l~ 138 (375)
+++++.+ ++..|++.|+|++|+ +|||.. |++++++. .|..|++++++ ....+++|++|+||+ ++
T Consensus 2 ~~~l~~~-----~i~~v~~~~~D~~G~-~r~k~v----p~~~~~~~~~~G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~ 71 (435)
T TIGR03105 2 QALARDK-----GIKYFLASFVDLHGV-QKAKLV----PAEAIDHMATGGAGFAGFAAWGLGQSPADPDLMAIPDLDSLT 71 (435)
T ss_pred hhhHhhC-----CCCEEEEEEECCCCC-eeEEEE----eHHHHHHHHcCCCcccchhhhccCCCCCCCCEEEEeccccce
Confidence 3455553 478899999998887 888776 56666554 57888887763 234578999999998 99
Q ss_pred ecCCCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCc
Q 017214 139 KDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYY 218 (375)
Q Consensus 139 ~~Pw~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y 218 (375)
++||.+ ++++|+||++. +|+|++.|||++|+++++++++.|+++++|+|+|||||+.+.++... +.+..+....++|
T Consensus 72 ~~pw~~-~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~-~~~~~~~~~~~~~ 148 (435)
T TIGR03105 72 QLPWQP-GVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLS-IADRADTLAKPCY 148 (435)
T ss_pred eCCCCC-CeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCCCCcc-cCCCCCCCCccCC
Confidence 999988 49999999976 89999999999999999999999999999999999999975431111 1111122233457
Q ss_pred cCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccC
Q 017214 219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKP 298 (375)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP 298 (375)
+..+.+. ..+++++|+++|+.+||+|+++|+|+|||||||++.|.++|+|||+++++|++||+||++||++|||||||
T Consensus 149 ~~~~~~~--~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP 226 (435)
T TIGR03105 149 DQRGLMR--RYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKP 226 (435)
T ss_pred CCcchhh--hhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCcc
Confidence 7666665 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeeeecccccc---------cC---CHHHHHHHHHHHhHhhHHHhhccc---cccccCCCCC------CC
Q 017214 299 IEGDWNGAGCHTNYSTKSMRE---------EG---GYETIKKAILNLSLRHKEHISAYG---EGNERRLTGK------HE 357 (375)
Q Consensus 299 ~~~~~~GsG~HvH~SL~~~~~---------~~---g~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~------~~ 357 (375)
+.+ ++|||||+|+|||+.++ ++ -+...++||||| |+|+++++||+ +||||||+|+ +|
T Consensus 227 ~~~-~~GsG~H~H~Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~ 304 (435)
T TIGR03105 227 FAD-LTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATW 304 (435)
T ss_pred CCC-CCccceEEEEeeecCCCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCccc
Confidence 998 69999999999997311 00 123457999999 99999999997 4999999995 89
Q ss_pred CCCCCceeeecCCCCCCC
Q 017214 358 TASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 358 ap~~~~~~WG~~NRsaa~ 375 (375)
||+ +++||++||+++|
T Consensus 305 AP~--~~~WG~~NR~a~i 320 (435)
T TIGR03105 305 APN--FISYGGNNRTHMV 320 (435)
T ss_pred CCc--eeeccCCCCceeE
Confidence 999 9999999999985
No 7
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-59 Score=449.93 Aligned_cols=312 Identities=60% Similarity=1.109 Sum_probs=295.5
Q ss_pred HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecC
Q 017214 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 141 (375)
Q Consensus 62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~P 141 (375)
.+...++... ++..++.++|||+|..|.++|+|++++..+++.++++|.|+|||+++|++.+.+||.+|+|..++++|
T Consensus 15 ~~~~~~~~L~--~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dP 92 (380)
T KOG0683|consen 15 TAILEYLYLR--AKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDP 92 (380)
T ss_pred hhhhhhcccc--ccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCc
Confidence 3445555554 44568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCC
Q 017214 142 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA 221 (375)
Q Consensus 142 w~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~ 221 (375)
|+.+++.+|+|++++.+|.|.+.+-|..+.+++....-..-.||+|.|+||.+++...++++|||..+.|.++++|||..
T Consensus 93 fr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~V 172 (380)
T KOG0683|consen 93 FRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGV 172 (380)
T ss_pred ccCCCCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeec
Confidence 99999999999999999999999999999999999877789999999999999998667899999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCC
Q 017214 222 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG 301 (375)
Q Consensus 222 ~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~ 301 (375)
+.++.|.+|+++++|++|..+||.+.+++.|++||||||+++|+.++.+||++|++|++|++||+++|+.|||.|||..+
T Consensus 173 Gad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g 252 (380)
T KOG0683|consen 173 GADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILG 252 (380)
T ss_pred cccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcc----ccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 302 ~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~----~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+|+|+|+|.++|+..++.++|..++..++.+||.+|..++.++ +..+-+||.+.+++..|+.++||+.||.+.|
T Consensus 253 ~WngaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~si 330 (380)
T KOG0683|consen 253 DWNGAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSI 330 (380)
T ss_pred cccCcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCcee
Confidence 9999999999999999989999999999999999999999999 5688999999899999999999999999865
No 8
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=4e-58 Score=438.37 Aligned_cols=205 Identities=24% Similarity=0.409 Sum_probs=172.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCC-CCC----CCCCCCCccCCccChhHHHHHHHHHHH
Q 017214 163 PTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPV-GAY----PGPQGPYYCGAGADKSFGRDIADAHYK 237 (375)
Q Consensus 163 ~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~-~~~----~~~~~~~y~~~~~~~~~~~~i~~~l~~ 237 (375)
+.|||++|+|+++++++.|+++++|+|+|||||+++.. .+++. .+. ....++||+..+.+. ..+++++|++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDD--GGWPRPSGYPDEPGQDYGGYYSLSPLDA--GEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEE--TTSSSTTSEESESSSTTTBSSTTTTTST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCcc--cccccccccccccccccCCcCCCchhhH--HHHHHHHHHH
Confidence 47999999999999999999999999999999998632 12221 111 224567777777666 6899999999
Q ss_pred HHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccc
Q 017214 238 ACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSM 317 (375)
Q Consensus 238 al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~ 317 (375)
+|+++||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||++|||||||+.++ +|||||+|+|||+.
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~-~GsG~H~h~Sl~~~ 155 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGD-NGSGMHLHISLWDA 155 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTS-S--BEEEEEEECHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCc-Cccchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999995 99999999999984
Q ss_pred -cc------cCC----HHHHHHHHHHHhHhhHHHhhccc---cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 318 -RE------EGG----YETIKKAILNLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 318 -~~------~~g----~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
++ +++ ....++||||| |+|+++|+||+ +||||||++++|||+ +++||.+||+++|
T Consensus 156 ~~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap~--~~~wG~~NR~a~i 224 (259)
T PF00120_consen 156 KDGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAPT--YISWGYDNRSAAI 224 (259)
T ss_dssp HTTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSSS--BEEEEESHTTSSE
T ss_pred cccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCcccee--ccchhhcccchhh
Confidence 11 112 23457999999 99999999996 599999999999999 9999999999975
No 9
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.61 E-value=3e-15 Score=148.44 Aligned_cols=169 Identities=28% Similarity=0.394 Sum_probs=123.7
Q ss_pred CcceEeeeeeEEEeccCCC--CCC----CCCCCCCCCCCC-----CCccCCccC-hhHHHHHHHHHHHHHHHcCceeeee
Q 017214 182 EVPWFGIEQEYTLLQQNVK--WPL----GWPVGAYPGPQG-----PYYCGAGAD-KSFGRDIADAHYKACLYAGINISGT 249 (375)
Q Consensus 182 ~~~~vg~E~EF~L~~~~~~--~~~----g~~~~~~~~~~~-----~~y~~~~~~-~~~~~~i~~~l~~al~~~GI~ve~~ 249 (375)
.-..+|.|+||||++.+.- +|. |...=+.+.++| +||...+-. ..|+.|+-.++| ++||++.+-
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeRV~~FM~Dve~~Ly----aLGIpaKTr 289 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPERVSAFMKDVEKELY----ALGIPAKTR 289 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccHHHHHHHHHHHHHHHH----HcCCccccc
Confidence 5678999999999987531 110 111112233332 676666533 356677766665 899999999
Q ss_pred cCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccccCCHHHH---
Q 017214 250 NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETI--- 326 (375)
Q Consensus 250 h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~~g~n~~--- 326 (375)
|.|++||||||.--+.++--|+|+-.+.-+++|.+|++||+..-..-|||.+ .+|||-|.|.|+-.. +|.|++
T Consensus 290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAG-iNGSGKH~NWSmGtd---~g~NLLdPg 365 (724)
T COG3968 290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAG-INGSGKHNNWSMGTD---DGLNLLDPG 365 (724)
T ss_pred ccccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccC-cCCCCCccccccccC---CCcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999 599999999998652 344432
Q ss_pred -------------HHHHHHHhHhhHHHhhccc--cccccCCCCCCCCCC
Q 017214 327 -------------KKAILNLSLRHKEHISAYG--EGNERRLTGKHETAS 360 (375)
Q Consensus 327 -------------~~~iaGl~L~h~~al~a~~--~NSYkRl~~~~~ap~ 360 (375)
..-|.++ -++.+-|-+-. ..+-.||..+ +||.
T Consensus 366 D~PhdN~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGAN-EAPP 412 (724)
T COG3968 366 DMPHDNKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGAN-EAPP 412 (724)
T ss_pred CCCCccceeehhhHHHHHHH-HHHHHHHHHHHhccCCccccccC-CCCc
Confidence 2336666 56655554443 3456788655 4543
No 10
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.53 E-value=1.6e-14 Score=115.36 Aligned_cols=75 Identities=31% Similarity=0.536 Sum_probs=60.3
Q ss_pred eeEEEEEEEecccccccceeeeeccCCCCC-CCC--CCccccCCCC-CCCCCCCccEEEEeEe--ceecCCCCCC--eEE
Q 017214 78 KIIAEYIWIGGTGIDMRSKSKTISKPVEHP-SEL--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGN--NIL 149 (375)
Q Consensus 78 ~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~-~~~--~~~~fDgss~-g~~~~~~~D~~l~PD~--l~~~Pw~~~~--~a~ 149 (375)
+..|++.| +|+.|+.+++.+|++.+ ++. .+++|||||+ ||.++++||++|+||+ ++++||++++ +++
T Consensus 2 V~~v~~~f-----~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~ 76 (84)
T PF03951_consen 2 VKFVDLQF-----TDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTAR 76 (84)
T ss_dssp -EEEEEEE-----E-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEE
T ss_pred eEEEEEEE-----EcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEE
Confidence 34555555 45777788888888888 444 5789999999 9999999999999996 9999999865 999
Q ss_pred EEEEeecC
Q 017214 150 VICDTYTP 157 (375)
Q Consensus 150 Vlcd~~~~ 157 (375)
|+||+|+|
T Consensus 77 v~cdv~~P 84 (84)
T PF03951_consen 77 VICDVYDP 84 (84)
T ss_dssp EEEEEEST
T ss_pred EEEEeECc
Confidence 99999985
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.40 E-value=3.3e-06 Score=82.23 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=88.0
Q ss_pred eEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCC
Q 017214 185 WFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGP 264 (375)
Q Consensus 185 ~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~ 264 (375)
.+|+|.||+|.|+.+. .+. +... .++++++.+ ..+ ..+.+|...+|.||+..+
T Consensus 1 t~GvE~E~~lvD~~t~---------~~~---------~~~~---~~~l~~~~~---~~~---~~~~~El~~~qiEi~t~p 53 (287)
T TIGR02050 1 TLGVEEELLLVDPHTY---------DLA---------ASAS---AVLIGACRE---KIG---AGFKHELFESQVELATPV 53 (287)
T ss_pred CceeeeeeeeEcCCcc---------CcC---------ccCh---HHHHHhhhh---hcc---cccChhhhccEEEecCCC
Confidence 4799999999997631 111 0001 244444321 222 348999999999999999
Q ss_pred C-hHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc-CcCCCC-------------------------CCceeeeeeecccc
Q 017214 265 S-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPK-PIEGDW-------------------------NGAGCHTNYSTKSM 317 (375)
Q Consensus 265 ~-~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK-P~~~~~-------------------------~GsG~HvH~SL~~~ 317 (375)
+ +.-++.+.+...+..++++|+++|+...-..- |+.+ + .-+|+|+|+++-+
T Consensus 54 ~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~-~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d- 131 (287)
T TIGR02050 54 CTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFAR-WRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPS- 131 (287)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCC-CccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCC-
Confidence 8 57779999999999999999999987543221 3332 1 2489999999975
Q ss_pred cccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 318 REEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 318 ~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
+.+ +-..+..+ ..++|.+.|++.||
T Consensus 132 ----~~~-~i~~~n~l-~~~lP~llALsANS 156 (287)
T TIGR02050 132 ----PDD-AVAVLNRL-LPWLPHLLALSASS 156 (287)
T ss_pred ----HHH-HHHHHHHH-HHHHHHHHHHHhCC
Confidence 222 22344456 77788888887665
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.22 E-value=1e-05 Score=81.50 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=91.1
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEc
Q 017214 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (375)
Q Consensus 183 ~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l 262 (375)
.+.+|+|.||+|++..+. .+. ++ ..++++.+ ... -.-..+..|..-+|.||+.
T Consensus 10 ~~tiGvE~E~~lVD~~t~---------~~~---~~----------~~~vl~~~----~~~-~~~~~i~~El~~~qiEi~t 62 (373)
T PRK13517 10 RPTLGVEWELLLVDPETG---------ELS---PR----------AAEVLAAA----GED-DEGPHLQKELLRNTVEVVT 62 (373)
T ss_pred CCeeEeeeeEeeECCCcC---------CcC---cc----------HHHHHHhc----ccc-cCCCcccccccCCEEEECC
Confidence 459999999999997532 110 11 24454433 111 1124688899999999999
Q ss_pred CCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc-CcCC--C----------------------CCCceeeeeeeccc
Q 017214 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPK-PIEG--D----------------------WNGAGCHTNYSTKS 316 (375)
Q Consensus 263 ~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK-P~~~--~----------------------~~GsG~HvH~SL~~ 316 (375)
.|+ +.-++.+.+...+..++++|+++|+...-..- |+.+ + ..-+|+|+|+++-+
T Consensus 63 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~ 142 (373)
T PRK13517 63 GVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS 142 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC
Confidence 998 57789999999999999999999976432111 2221 0 02689999999975
Q ss_pred ccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 317 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 317 ~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
.. .+-.....+ ..++|.+.|++.||
T Consensus 143 -----~~-~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 -----RE-KVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred -----HH-HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 22 233456667 88889999998766
No 13
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=98.13 E-value=3.1e-05 Score=78.07 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=87.3
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEc
Q 017214 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (375)
Q Consensus 183 ~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l 262 (375)
.+.+|+|.||+|.|+++. .+. + . ..++++.+. ... --+.+..|..-+|.|++.
T Consensus 11 ~~t~GvE~E~~LVD~~t~---------~~~---------~--~--~~~vl~~~~----~~~-~~~~v~~El~~~qIEi~T 63 (373)
T PRK13516 11 PFTLGVELELQLVNPHDY---------DLT---------Q--D--SSDLLRAVK----NQP-TAGEIKPEITESMIEIAT 63 (373)
T ss_pred CCeeEEEEEEEeEcCCCc---------CcC---------c--c--HHHHHHhcc----ccc-cccccChhhhCceEEEcC
Confidence 459999999999997632 111 0 0 245554431 101 123588999999999999
Q ss_pred CCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc-CcCC--------C----------------CCCceeeeeeeccc
Q 017214 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPK-PIEG--------D----------------WNGAGCHTNYSTKS 316 (375)
Q Consensus 263 ~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK-P~~~--------~----------------~~GsG~HvH~SL~~ 316 (375)
.|+ +.-++.+++...+..++++|+++|+...=..- |+.+ . ..-.|+|+|+.+-|
T Consensus 64 ~p~~~~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d 143 (373)
T PRK13516 64 GVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPS 143 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCC
Confidence 998 56779999999999999999999997432111 2211 0 02468999999865
Q ss_pred ccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 317 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 317 ~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
+...+ ..+..+ ..++|.+.|++.||
T Consensus 144 -----~~~av-~~~~~l-~~~lP~llALsAsS 168 (373)
T PRK13516 144 -----GDDAL-YLLHGL-SRYVPHFIALSASS 168 (373)
T ss_pred -----HHHHH-HHHHHH-HhHhHHHHHHHhCC
Confidence 22222 334455 66778888887544
No 14
>PLN02611 glutamate--cysteine ligase
Probab=98.02 E-value=7e-05 Score=77.61 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=94.0
Q ss_pred HHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCc---
Q 017214 168 HRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGI--- 244 (375)
Q Consensus 168 ~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI--- 244 (375)
.-|-..++.--.-+-...+|.|+|.+.|+..+. .|. +|+ . ..++++.+.+ ..|.
T Consensus 52 ~~lv~~~~~gck~~~~~~iG~E~E~f~~~~~~~---------~pv---~y~------~--i~~lL~~l~~---~~gw~~~ 108 (482)
T PLN02611 52 EDLVAYLASGCKPKEKWRIGTEHEKFGFELATL---------RPM---KYD------Q--IAQLLEGLAE---RFGWEKI 108 (482)
T ss_pred HHHHHHHHhcCCCCCCCeeEEeeeeeeccCCCC---------CCC---CHH------H--HHHHHHHHHH---hcCCcee
Confidence 334444443223455679999999999986522 111 121 1 4555555422 1221
Q ss_pred ---------ee--eeecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeE--------------eecccC
Q 017214 245 ---------NI--SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL--------------SLDPKP 298 (375)
Q Consensus 245 ---------~v--e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~A--------------TFmpKP 298 (375)
.- ..+.=|-| ||+|++..++ +.-++++.+...+..++.+|+++|+.. ..||||
T Consensus 109 ~e~g~iIgl~~~g~~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~pk~ 187 (482)
T PLN02611 109 MEGDNIIGLKQDGQSVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKG 187 (482)
T ss_pred ccCCceecccCCCCceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCCCh
Confidence 00 24455766 9999999998 678899999999999999999999953 233343
Q ss_pred c--------C--C----CC--CCceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 299 I--------E--G----DW--NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 299 ~--------~--~----~~--~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
- . + +. .-+|+|||+.+-+ +.... .-+.-+ +.+.|.++|++.||
T Consensus 188 RY~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~s-----eed~v-~~~~~~-~~l~Pvl~ALfANS 246 (482)
T PLN02611 188 RYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSS-----EQDMV-RKFRVG-LALQPIATALFANS 246 (482)
T ss_pred HHHHHHHHHHHhhhhhhhhccceEEEEEEecCCC-----HHHHH-HHHHHH-HHHHHHHHHHHhCC
Confidence 2 0 0 01 2478999998865 22222 223345 78889999999887
No 15
>PRK13515 carboxylate-amine ligase; Provisional
Probab=97.98 E-value=6.6e-05 Score=75.65 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=89.7
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEc
Q 017214 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (375)
Q Consensus 183 ~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l 262 (375)
.+.+|+|.||+|.+..+. .+. + . ..++++.. ... .-..+..|..-+|.||+.
T Consensus 5 ~~t~GvE~E~~lVD~~t~---------~l~---------~--~--~~~~l~~~----~~~--~~~~i~~El~~~qiEi~T 56 (371)
T PRK13515 5 EFTLGIEEEYLLVDPETR---------DLR---------S--Y--PDALVEAC----RDT--LGEQVKPEMHQSQVEVGT 56 (371)
T ss_pred CCcceEeEeEEEecCCcc---------ccc---------c--c--HHHHHHhc----hhh--cCCccCcchhccEEEECC
Confidence 468999999999997531 111 0 0 13344321 111 123689999999999999
Q ss_pred CCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc-CcCC------------------------CCCCceeeeeeeccc
Q 017214 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPK-PIEG------------------------DWNGAGCHTNYSTKS 316 (375)
Q Consensus 263 ~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK-P~~~------------------------~~~GsG~HvH~SL~~ 316 (375)
.|+ +.-++.+.+...+..+.++|+++|+...=++- |+.+ ...-+|+|+|+++-+
T Consensus 57 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d 136 (371)
T PRK13515 57 PVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD 136 (371)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC
Confidence 998 56778999999999999999999997632211 1111 013469999999865
Q ss_pred ccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 317 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 317 ~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
+ +.+-.+...+ ...+|.|.|++.||
T Consensus 137 -----~-e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 -----R-EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred -----H-HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 2344455667 77889899998877
No 16
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=97.84 E-value=6.5e-05 Score=73.06 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=68.0
Q ss_pred eeeecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEe--------------ecccC------------
Q 017214 246 ISGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS--------------LDPKP------------ 298 (375)
Q Consensus 246 ve~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~AT--------------FmpKP------------ 298 (375)
-..+++|..-+|.||+..|+ +.-++.+.+...+..+..+|+++|+... ..|||
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 45789999999999999998 5677999999999999999999998732 23331
Q ss_pred --cCCCCCCceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 299 --IEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 299 --~~~~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
+..+..-+|+|+|+++-+ +.+..-..+..+ ...+|.+.|++.||
T Consensus 114 g~~~~~~~~~g~hvhV~v~~-----~~e~~v~~~n~~-~~~~P~llALsANS 159 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDD-----GDEAAVRVMNAL-RPWLPVLLALSANS 159 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESS-----SHHHHHHHHHHH-HTTHHHHHHHH--B
T ss_pred hhhhhhhhhcccceEEeCCC-----ccHHHHHHHHHH-HHHhHHHHHHHcCC
Confidence 111123459999999966 333333455666 78889999997554
No 17
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.76 E-value=0.00011 Score=73.70 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=87.2
Q ss_pred ceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcC
Q 017214 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVG 263 (375)
Q Consensus 184 ~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~ 263 (375)
-.+|+|.||.|.|+. . .+. +.. ...+++.. ..... -+.+++|..-+|.||+..
T Consensus 13 ~TlGvEeE~~lvD~~-~---------~~~---------~~~---~~~vl~~~----~~~~~-~~~~~~El~~~qvEi~T~ 65 (357)
T PRK13518 13 GTLGIEEEFFVVDEY-G---------RPT---------SGT---DELVYEHE----PPEIL-AGRLDHELFKFVIETQTP 65 (357)
T ss_pred CceEEEEEEEEECCC-C---------Ccc---------cch---hHHHHHhc----ccccC-CCcccccccCceEEEcCc
Confidence 389999999999865 2 100 000 13333322 11111 246899999999999999
Q ss_pred CC-hHHHHhHHHHHHHHHHHHHHHHcCCeE--------------eecccCcC-------C----CCCCceeeeeeecccc
Q 017214 264 PS-VGIDAGDHIWCSRYLLERITEQAGVVL--------------SLDPKPIE-------G----DWNGAGCHTNYSTKSM 317 (375)
Q Consensus 264 ~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~A--------------TFmpKP~~-------~----~~~GsG~HvH~SL~~~ 317 (375)
++ +.-++.+++...|..+.++|+++|+.. ..+|||-. + ...-.|+|||+.+-+
T Consensus 66 ~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d- 144 (357)
T PRK13518 66 LIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDD- 144 (357)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchhcceeeEEEEEeCCCC-
Confidence 98 778899999999999999999999963 34455510 1 012379999999855
Q ss_pred cccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 318 REEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 318 ~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
....+ ..+..| .-.+|.+.|++.||
T Consensus 145 ----~d~av-~v~n~l-r~~LP~LlALsAnS 169 (357)
T PRK13518 145 ----ADKAV-WIANEL-RWHLPILLALSANS 169 (357)
T ss_pred ----HHHHH-HHHHHH-HhHHHHHHHHHcCC
Confidence 21111 123445 56779999998666
No 18
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=97.61 E-value=0.00051 Score=69.42 Aligned_cols=94 Identities=17% Similarity=0.047 Sum_probs=66.7
Q ss_pred eecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCC-e-E-----eeccc-Cc---CC--------------
Q 017214 248 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGV-V-L-----SLDPK-PI---EG-------------- 301 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl-~-A-----TFmpK-P~---~~-------------- 301 (375)
.+..|.-..|.|++..++ +.-++.+++...|..+..+|..+|. . + .|+.- ++ .+
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 456688899999999998 6778999999999999999999997 3 1 12221 11 11
Q ss_pred CCCCceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 302 ~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
..+=+|||||+.+-| +. .+-.....| .-++|.|.|+..||
T Consensus 111 ~~~i~G~HVHVgv~d-----~d-~av~v~n~l-r~~LP~LlALSAsS 150 (376)
T TIGR02048 111 QVVTASVHINIGIPD-----PE-ELMRACRLV-RMEAPLFLALSASS 150 (376)
T ss_pred hheeeEEEEEcCCCC-----HH-HHHHHHHHH-HHHHHHHHHHhcCC
Confidence 013479999999976 22 233456667 77788888886443
No 19
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=97.54 E-value=0.0025 Score=65.75 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=88.1
Q ss_pred CCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCce--------------
Q 017214 180 SAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN-------------- 245 (375)
Q Consensus 180 ~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~-------------- 245 (375)
-+-...+|.|.|-+.|+.++..+. +|+... . ..++++.+.. ..|.+
T Consensus 18 ~~~~~~iG~E~E~f~~~~~~~~~~------------~y~~~~---g--i~~~l~~l~~---~~g~~~~~e~g~~i~l~~~ 77 (446)
T TIGR01436 18 PKEQWRIGTEHEKFGFEKNTLRPM------------KYEQKG---G--IAELLNGIAE---RFGWQKVMEGDKIIGLKQD 77 (446)
T ss_pred cCCCCceEeeeeeeeeecCCCCCC------------CCCCch---h--HHHHHHHHHh---hcCCceeccCCceeeecCC
Confidence 345679999999999986543111 121111 1 3555555421 22211
Q ss_pred eeeecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEe--------------ecccCcCC----C--C-
Q 017214 246 ISGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS--------------LDPKPIEG----D--W- 303 (375)
Q Consensus 246 ve~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~AT--------------FmpKP~~~----~--~- 303 (375)
=..+.=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+... .||||--. . .
T Consensus 78 ~~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l~~~G~~P~~~~~~~~~~pk~RY~~M~~~~~~~ 156 (446)
T TIGR01436 78 KQSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGFLGLGFQPKWRREDIPLMPKGRYDIMRNYMPKV 156 (446)
T ss_pred CCeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEecCCCCCCCcccCCCCCchHHHHHHHHHhhc
Confidence 034455666 9999999998 5778999999999999999999999632 33343200 0 0
Q ss_pred -------C--CceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 304 -------N--GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 304 -------~--GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
- -+|+|||+-.-+ ..... .-+.-+ +...|.++|++.||
T Consensus 157 G~~g~~mm~~t~g~qVhld~~~-----e~d~v-~~~~~~-~~l~Pvl~ALfANS 203 (446)
T TIGR01436 157 GKLGLDMMLRTCTVQVNLDFSS-----EADMV-RKFRAS-LALQPLATALFANS 203 (446)
T ss_pred chHHHHHhHhheeEEEeeCCCC-----HHHHH-HHHHHH-HHHHHHHHHHHhCC
Confidence 1 367888887654 22222 223334 67889999998887
No 20
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=96.32 E-value=0.024 Score=57.45 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=62.6
Q ss_pred CCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeE------------eecccC--------cC---C----CCCCc
Q 017214 255 PGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL------------SLDPKP--------IE---G----DWNGA 306 (375)
Q Consensus 255 pGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~A------------TFmpKP--------~~---~----~~~Gs 306 (375)
-||+|++..|. +.-++++.+...+..|+++|+++|+.. ..|||| +. + +...+
T Consensus 69 GgQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~lva~G~~P~~~~~~itpk~RY~~M~~~~~~~~G~~G~~MM~~ 148 (390)
T TIGR03444 69 GGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLALVGLGADPLRPPRRVLPGPRYRAMEQFFATGIGPFGALMMCS 148 (390)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCCCCCccCCCchHHHHHHHHHhhhccCchHHHHhhC
Confidence 37999999998 677899999999999999999999963 233443 11 1 01368
Q ss_pred eeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhccccccc
Q 017214 307 GCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNE 349 (375)
Q Consensus 307 G~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NSY 349 (375)
|+|+|++|-.. ....-+...+.=. ..-.|.++|++.||-
T Consensus 149 tasVQV~ld~~---~~e~D~~~k~rva-~aL~PvLlALfANSP 187 (390)
T TIGR03444 149 TASVQVNLDAG---TDPAEWAERWRLA-HALGPVLIAAFANSP 187 (390)
T ss_pred ceeEEEccCCC---CCHHHHHHHHHHH-HHHHHHHHHHHhCCc
Confidence 99999999652 1122233222222 334788999988874
No 21
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.018 Score=57.11 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEcCCChHH-HHhHHHHHHHHHHHHHHHHcCCeEee--------------cccC-----------cCCCCC
Q 017214 251 GEVMPGQWEYQVGPSVGI-DAGDHIWCSRYLLERITEQAGVVLSL--------------DPKP-----------IEGDWN 304 (375)
Q Consensus 251 ~E~gpGQ~Ei~l~~~~~l-~aaD~~~~~K~~vk~VA~~~Gl~ATF--------------mpKP-----------~~~~~~ 304 (375)
+|.--.+-|+..+.+..+ +|+-.+--.|..+++.|..|||...- -+|| .....-
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 555556778888888654 46666777888999999999998531 2333 000001
Q ss_pred CceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccc
Q 017214 305 GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGE 346 (375)
Q Consensus 305 GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~ 346 (375)
=-|.|||+.+-+ +..++ ..+-+| +.++|++.|+..
T Consensus 123 v~G~HVHVGi~~-----~d~~~-~~l~~l-~~~~PhlLALSA 157 (369)
T COG2170 123 VAGQHVHVGIPS-----PDDAM-YLLHRL-LRYVPHLLALSA 157 (369)
T ss_pred eeeEEEEecCCC-----HHHHH-HHHHHH-HhhhhHHHhhhc
Confidence 258999998866 33333 467789 999999999963
No 22
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=86.33 E-value=2.2 Score=43.27 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=63.3
Q ss_pred eecCCCCCCcEEEEcCCChHH-HHhHHHHHHHHHHHHHHHHcCCeEee--------------------------cccCcC
Q 017214 248 GTNGEVMPGQWEYQVGPSVGI-DAGDHIWCSRYLLERITEQAGVVLSL--------------------------DPKPIE 300 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~~~l-~aaD~~~~~K~~vk~VA~~~Gl~ATF--------------------------mpKP~~ 300 (375)
.+.-|.| ||||++-.|.+.+ +++-..=.--..||++|+..|+...+ ||| .
T Consensus 90 aIslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvGlG~~Pkw~r~e~p~mpk~RY~iM~~Ympk--v 166 (456)
T COG3572 90 AISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVGLGGSPKWTRAEVPVMPKSRYAIMTRYMPK--V 166 (456)
T ss_pred eEEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCCCccccCcCCCCCchHHHHHHHHHhh--c
Confidence 3455777 9999999999765 45665556667899999999987554 334 4
Q ss_pred CCCCCceeeeeeecccccccC--CHHHHHHHHHHHhHhhHHHhhccccccccCCCCCCCCC
Q 017214 301 GDWNGAGCHTNYSTKSMREEG--GYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETA 359 (375)
Q Consensus 301 ~~~~GsG~HvH~SL~~~~~~~--g~n~~~~~iaGl~L~h~~al~a~~~NSYkRl~~~~~ap 359 (375)
+ ..|+-||.-.......-+= ..+..+.+ .+|++--|..+|++.|| =+..+-+.+
T Consensus 167 g-~~glDMm~rtctiQVNLD~sse~dm~rk~--rvs~~Lqp~ataLFANS--pFtegkpng 222 (456)
T COG3572 167 G-VKGLDMMTRTCTIQVNLDFSSETDMRRKM--RVSLALQPLATALFANS--PFTEGKPNG 222 (456)
T ss_pred C-CcchhhhhhhheeEEeeccCcchhHHHHH--HHHhhhhHHHHHHHccC--CccCCCCcc
Confidence 4 3666666543332211011 12233333 23466667788888887 455554444
No 23
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=82.64 E-value=2.9 Score=32.00 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCC------CcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 017214 230 DIADAHYKACLYAGINISGTNGEVMP------GQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~gp------GQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmp 296 (375)
.++.++.+.+.+.|+.|..+..+..+ ++|.+.+.-.-+ ... +.-.++.-++.+|++.|+.++|.|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~-~~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGT-DLDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCC-CHHHHHHHHHHHHHHhcceEEecC
Confidence 35566667778999999999776654 777655443322 111 245778889999999999988854
No 24
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=82.05 E-value=9.9 Score=30.82 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCcee
Q 017214 167 RHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINI 246 (375)
Q Consensus 167 R~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~v 246 (375)
...-+++++.|++.|..+..-.++||++.-++. +-++.+...+...|..|
T Consensus 3 ~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~------------------------------~~~~~f~~~~~~~g~~v 52 (104)
T PF06877_consen 3 IIENREVLEALEEDGDDLSKPRPIEHWFYFEDE------------------------------EDAEKFAEELEKLGYEV 52 (104)
T ss_dssp HHHHHHHHHHHHHHT--TTS-EEEEEEEEES-H------------------------------HHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEE
Confidence 445578888999999999999999998876431 11233334467899999
Q ss_pred eeecC--CCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCe
Q 017214 247 SGTNG--EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (375)
Q Consensus 247 e~~h~--E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ 291 (375)
+.... |-+.+.|.+.+.....+...+ +.-.=.-+-.+|+++|..
T Consensus 53 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~-I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 53 ESAEEDEEDGDGPYCLDISREMVLDYED-INAITQELEDLAKEFGGE 98 (104)
T ss_dssp B----B-SS-SSBEEEEEEEEE-S-HHH-HHHHHHHHHHHHHHHT-E
T ss_pred EEeecccCCCCceEEEEEEEecCCCHHH-HHHHHHHHHHHHHHhCcE
Confidence 88775 678899999998776654333 333334456788887754
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=80.08 E-value=4.4 Score=31.09 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEee
Q 017214 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSL 294 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATF 294 (375)
-++.++.+++.+.|++|+..+.-.-.|+|-+.+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 45667777788999999999999889999887765544 567778999999999999999876
No 26
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.61 E-value=6.8 Score=30.77 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
.++.++.+.+...|+.|..++.....|+|.+.+.-.-+ ...++.-.++..+++++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 45666677778999999999998888888776554422 11345668889999999999999988554
No 27
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.05 E-value=11 Score=28.73 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 017214 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmp 296 (375)
-++.++.+.+.+.|++|+.++.-...|+|-+.+.-.-+ ...++-.++..+..+|++.|+.+++-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 45667777788999999999777777777666543321 111355788899999999999988643
No 28
>PRK00194 hypothetical protein; Validated
Probab=66.43 E-value=11 Score=29.60 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 017214 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 295 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFm 295 (375)
-++.++.+.+.+.|++|..++.....|.|.+.+.-.-+ ...++.-.++.-+++++.+.|+.++|-
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~ 79 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQ 79 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 45666666778999999999999888888774332211 112334577788899999999999884
No 29
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=65.65 E-value=5.7 Score=39.74 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 227 FGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 227 ~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
|.+.++..+. ++.-||--++..| | -+|.++.+|.-+|++|.+.|+..||||-
T Consensus 251 f~rAMvKtMt---~alkiPHF~y~dE-------I---------n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 251 FSRAMVKTMT---EALKIPHFGYVDE-------I---------NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred HHHHHHHHHH---HHhcCCccccccc-------c---------ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 5566666654 3556665555444 2 3699999999999999999999999984
No 30
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=60.90 E-value=13 Score=41.25 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.2
Q ss_pred cceEeeeeeEEEeccC
Q 017214 183 VPWFGIEQEYTLLQQN 198 (375)
Q Consensus 183 ~~~vg~E~EF~L~~~~ 198 (375)
...+|+|-||.+++.+
T Consensus 18 ~~~~GiE~E~lrVd~~ 33 (752)
T PRK02471 18 QANFGLEKESLRVDSD 33 (752)
T ss_pred cCCcceEeeeeEECCC
Confidence 5689999999999976
No 31
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=59.96 E-value=26 Score=26.82 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 017214 229 RDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 295 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFm 295 (375)
.-++.++.+.+.+.|++|.....-...|+|-+-+....+ .+..-.++..++.+|+++|+.++.+
T Consensus 12 ~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 12 PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 346677777788999999999888888888776655533 1345678888899999999988753
No 32
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=56.17 E-value=13 Score=31.62 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEeecCcchHHHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC
Q 017214 52 LALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL 110 (375)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~ 110 (375)
|.++....+++++++.+++| |. ..| ++.|.|--||.+++++-+.+....
T Consensus 61 f~~~~~~evlaele~Cr~dh--p~---eYI-----RliGfDp~gkrrv~sfIVhRPng~ 109 (127)
T COG4451 61 FGAKTAGEVLAELEACRADH--PG---EYI-----RLIGFDPKGKRRVVSFIVHRPNGN 109 (127)
T ss_pred ccccchHHHHHHHHHHHHhC--CC---CeE-----EEEEecCCCceEEEEEEEECCCCC
Confidence 55666778899999999999 66 343 334888999999988888877654
No 33
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=51.23 E-value=8.8 Score=31.74 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHcCceeeeecCCCCCCcEEEEcC
Q 017214 240 LYAGINISGTNGEVMPGQWEYQVG 263 (375)
Q Consensus 240 ~~~GI~ve~~h~E~gpGQ~Ei~l~ 263 (375)
.++|=+||++.-+ +||||||||.
T Consensus 55 ~a~ge~ietIrI~-~pG~YeiNl~ 77 (112)
T COG3364 55 GAQGEPIETIRIL-RPGVYEINLE 77 (112)
T ss_pred hcccCcceEEEEe-cCceEEEehh
Confidence 3678788888876 8999999985
No 34
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=50.77 E-value=46 Score=24.80 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHcCceeeeecCCCCCCcEEEEcCCC--hHHHHhHHHHHHHHHHHHHHHHcCC
Q 017214 234 AHYKACLYAGINISGTNGEVMPGQWEYQVGPS--VGIDAGDHIWCSRYLLERITEQAGV 290 (375)
Q Consensus 234 ~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~--~~l~aaD~~~~~K~~vk~VA~~~Gl 290 (375)
++.+.|..+|++++. . + ..+++++...+- |.+..+| ++.+||+-+|+
T Consensus 23 ei~~~L~~lg~~~~~-~-~-~~~~~~v~~P~~R~Di~~~~D-------liEei~r~~Gy 71 (71)
T smart00874 23 EIEEILKRLGFEVEV-S-G-DDDTLEVTVPSYRFDILIEAD-------LIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHCCCeEEe-c-C-CCCeEEEECCCCccccCcccH-------HHHHHHHHhCC
Confidence 345557899999964 1 1 145688877764 5566666 78999999985
No 35
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=49.95 E-value=1.4e+02 Score=28.57 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=58.6
Q ss_pred HHcCceeeeecCC----CCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecc
Q 017214 240 LYAGINISGTNGE----VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK 315 (375)
Q Consensus 240 ~~~GI~ve~~h~E----~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~ 315 (375)
+..-|++..+.+- --|-+.=|.|.|.+++.-. +++.+=..+|++-.+.||.+ | || .. -|.|+|+.+-|.
T Consensus 95 n~~~lE~H~w~s~~~~~~~PD~lvfDLDP~~~~~f~-~v~~~A~~~r~~L~~lgL~~-f-~K--TS--G~kGlHV~vPl~ 167 (245)
T TIGR02778 95 QQGALEFHIWGARIDAPEKPDRIVFDLDPGPGVAWK-LVVEAAQLIRELLDELGLES-F-VK--TS--GGKGLHVYVPLR 167 (245)
T ss_pred HhCcEEeeCCCCCCCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEECC
Confidence 3344555544432 2489999999998875433 34445556899999999973 4 55 22 478999999997
Q ss_pred cccccCCHH---HHHHHHHHHhHhhHHHhhc
Q 017214 316 SMREEGGYE---TIKKAILNLSLRHKEHISA 343 (375)
Q Consensus 316 ~~~~~~g~n---~~~~~iaGl~L~h~~al~a 343 (375)
.. -+.+ .|-++||-.--+..|++..
T Consensus 168 ~~---~~~~~~r~fa~~iA~~l~~~~Pd~~t 195 (245)
T TIGR02778 168 PT---LSWDEVKDFAKALAQALAQQMPDRFT 195 (245)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHCchhhh
Confidence 62 2322 3556666651334466533
No 36
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=48.15 E-value=49 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCceeeeecCCCCCCcEEEEcCCC--hHHHHhHHHHHHHHHHHHHHHHcCC
Q 017214 233 DAHYKACLYAGINISGTNGEVMPGQWEYQVGPS--VGIDAGDHIWCSRYLLERITEQAGV 290 (375)
Q Consensus 233 ~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~--~~l~aaD~~~~~K~~vk~VA~~~Gl 290 (375)
+++.+.|..+|+.++.. ....+++...+- |....+| ++.+||+-||+
T Consensus 22 ~~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 44555678999999876 667899888764 6677777 77999999885
No 37
>PRK11191 RNase E inhibitor protein; Provisional
Probab=45.38 E-value=2.1e+02 Score=24.99 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceee
Q 017214 168 HRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINIS 247 (375)
Q Consensus 168 ~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve 247 (375)
..=+++++.|.+.|-.|..-.++|+++.-.+.. . +..+.. .+.++|..|.
T Consensus 12 ~~~~eVi~~L~edGsd~~~~~~IEH~~~f~d~~------------------------~--lek~a~----~a~klGyeV~ 61 (138)
T PRK11191 12 EETREIIEELLEDGSDPDALYTIEHHFSADDFD------------------------K--LEKAAV----EAFKLGYEVT 61 (138)
T ss_pred HHHHHHHHHHHHcCCCcCCCEEEEEEEecCCHH------------------------H--HHHHHH----HHHHcCCeee
Confidence 334678888888899999999999987643310 1 233333 4568999984
Q ss_pred ee---cCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCe
Q 017214 248 GT---NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (375)
Q Consensus 248 ~~---h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ 291 (375)
.. ..|-+..-|-+.+.....+.+.+=--..+ -+-.+|+++|..
T Consensus 62 ~~ee~e~edg~~~~~~~~~~e~~l~~e~I~~~~~-~L~~LA~k~~g~ 107 (138)
T PRK11191 62 DAEELELEDGDVIFCCDAVSEVALNAELIDAQVE-QLLALAEKFDVE 107 (138)
T ss_pred cccccccCCCCeEEEEEEEecCCCCHHHHHHHHH-HHHHHHHHhCCC
Confidence 32 24455556777776666665444333333 446788888863
No 38
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=43.70 E-value=59 Score=29.81 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCC------cE----EEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 229 RDIADAHYKACLYAGINISGTNGEVMPG------QW----EYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~gpG------Q~----Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
--|+.++.+.+...||+|+.+.++..+. .| |+.+... -++-.+|..+.++|.+.++.+++-|.
T Consensus 106 PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~------~~~~~L~~~l~~l~~eL~vd~~l~~~ 178 (190)
T PRK11589 106 PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS------QDAANIEQAFKALCTELNAQGSINVV 178 (190)
T ss_pred CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC------CCHHHHHHHHHHHHHHhCceEEEEEe
Confidence 4577778888899999999999996654 34 4444432 12446788899999999999998775
No 39
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=42.40 E-value=39 Score=32.54 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=34.3
Q ss_pred EEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeeccc
Q 017214 259 EYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS 316 (375)
Q Consensus 259 Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~ 316 (375)
|+--.|+ +|.+..+++..+.....+.....++.--==..|+.+ ---|.|+|+|=..
T Consensus 52 ElRP~P~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~g--fp~GGHiHfsgv~ 108 (261)
T PF14395_consen 52 ELRPAPSPDPAELFENIRRALREAARRIPDRSLEWLAGSMPFPG--FPLGGHIHFSGVP 108 (261)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCCC--CCcCCeEEecCCC
Confidence 4444565 788888887766665555555555542222345555 3468999998554
No 40
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=39.54 E-value=1.8e+02 Score=27.69 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=52.4
Q ss_pred CCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccccCCHH---HHHHH
Q 017214 253 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYE---TIKKA 329 (375)
Q Consensus 253 ~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~~g~n---~~~~~ 329 (375)
--|-+.=|.|.|.+++.-.| ++-+=..+|++-.+.||.. | || .. -|.|+|+.+-|... -+.+ .|-++
T Consensus 100 e~PD~~vfDLDP~~~~~f~~-v~~~A~~~r~~L~~lgL~s-~-~K--TS--G~kGlHV~vPl~~~---~~~~~vr~fa~~ 169 (231)
T cd04863 100 GPPDRLVFDLDPGEPAGLVE-CARVALWLRDRLAALGLAS-F-PK--TS--GSKGLHLYVPLDGP---VSSDQTKEFAKA 169 (231)
T ss_pred CCCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc-c-eE--CC--CCCeEEEEEEcCCC---CCHHHHHHHHHH
Confidence 35899999999987654333 3444456899999999973 4 55 22 47899999999762 2322 34455
Q ss_pred HHHHhHhhHHHhhc
Q 017214 330 ILNLSLRHKEHISA 343 (375)
Q Consensus 330 iaGl~L~h~~al~a 343 (375)
||-.--+..|++..
T Consensus 170 ~A~~l~~~~P~~~t 183 (231)
T cd04863 170 LARELEREHPDLVV 183 (231)
T ss_pred HHHHHHHHCchhhh
Confidence 66541333466543
No 41
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=38.72 E-value=59 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHhhhcCCCcceEeeeeeEEE
Q 017214 165 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 194 (375)
Q Consensus 165 ~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L 194 (375)
=||..++.+++.|.+ +|+|+||.-
T Consensus 33 mPrRT~Qd~i~aL~~------~~I~~~Fvq 56 (90)
T PF09904_consen 33 MPRRTIQDTIKALPE------LGIECEFVQ 56 (90)
T ss_dssp --HHHHHHHHHGGGG------GT-EEEEE-
T ss_pred CCHhHHHHHHHHhhc------CCeEEEEEe
Confidence 389999999999865 455667643
No 42
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=35.76 E-value=49 Score=26.36 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEe
Q 017214 229 RDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 293 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~AT 293 (375)
.+.+....+.+...|++++-+..|+--..--+.+.+. ||+-+-||.++|++++.++..+-
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIe 84 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIE 84 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEE
Confidence 4445555555779999999999998877777777776 78889999999999999998763
No 43
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=32.38 E-value=21 Score=30.94 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=13.4
Q ss_pred CceeeeecCCCCCCcEEEEcC
Q 017214 243 GINISGTNGEVMPGQWEYQVG 263 (375)
Q Consensus 243 GI~ve~~h~E~gpGQ~Ei~l~ 263 (375)
+-.||++.- .+||||||||.
T Consensus 83 ~~~iESIrI-~~pG~YElNL~ 102 (131)
T PF09845_consen 83 NDRIESIRI-LEPGSYELNLE 102 (131)
T ss_pred ccCcceEEE-ecCceEEecHH
Confidence 334454443 38999999983
No 44
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.88 E-value=58 Score=24.36 Aligned_cols=60 Identities=12% Similarity=-0.068 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCceeeeecCC--CCCCcEEEEcCCChHHHHh-HHHHHHHHHHHHHHHHcCCe
Q 017214 230 DIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAG-DHIWCSRYLLERITEQAGVV 291 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E--~gpGQ~Ei~l~~~~~l~aa-D~~~~~K~~vk~VA~~~Gl~ 291 (375)
-++..+.+.+.+.|+.|..++.- ...+.|.+.+.-..+ .. .+.-.++..+..+|.+.++.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 45666677778999999999776 456666665543322 21 13557888889999888763
No 45
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=31.46 E-value=4.6e+02 Score=24.83 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecc
Q 017214 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK 315 (375)
Q Consensus 254 gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~ 315 (375)
-|.+.=|.|.|.+++.- ++++-+=..+|++-++.||.+ | || .. -|.|+|+.+-|.
T Consensus 92 ~PD~lvfDLDP~~~~~f-~~v~~~A~~vr~~L~~lgL~~-f-~K--TS--G~kGlHV~vPl~ 146 (223)
T cd04866 92 KPSEIVFDLDPPSRDHF-SLAVEAANLLKEILDALGLTS-F-VK--TS--GNKGLQVYIPLP 146 (223)
T ss_pred CCCeEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcC
Confidence 68999999999877533 334555567899999999974 4 55 22 478999999998
No 46
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.21 E-value=87 Score=30.55 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecCC--CCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 017214 229 RDIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E--~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmp 296 (375)
--|+.++.+.|.+.|++|+.+... .+.++|.+.+.-..+ +..+.-.+|..+..+|.+.|+.++.-+
T Consensus 18 pGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~ 85 (286)
T PRK13011 18 AGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHD 85 (286)
T ss_pred CCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEee
Confidence 356777777788999999999985 678888876553311 223366889999999999999887663
No 47
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=30.31 E-value=2.6e+02 Score=25.94 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=38.5
Q ss_pred cEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccccCCHHHHHHHHHHHhHh
Q 017214 257 QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLR 336 (375)
Q Consensus 257 Q~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~ 336 (375)
-+||.-.+...-. .+-.++.+++.+.+. |-. ..+ .+.|+|||++-... .-....++..+.-+ +.
T Consensus 77 ~~ElvSP~l~~~~---~~~~i~~~~~~lr~~-~~~-------~~~--~scg~HVHv~~~~~--~~~~~~l~~l~~~~-~~ 140 (252)
T PF12224_consen 77 PVELVSPPLPYDE---ELEEIDKVLEALRRN-GAI-------GTN--DSCGFHVHVGPEPP--SFSLETLKRLAKAF-WL 140 (252)
T ss_pred eEEEECCCcCchh---hHHHHHHHHHHHHHc-CCc-------ccc--CCeeEEEEECCCCC--CccHHHHHHHHHHH-HH
Confidence 4677766543222 133445555555443 321 223 45899999997652 00134455555555 55
Q ss_pred hHHHhhccc
Q 017214 337 HKEHISAYG 345 (375)
Q Consensus 337 h~~al~a~~ 345 (375)
+-+.|..+.
T Consensus 141 ~E~~l~~~~ 149 (252)
T PF12224_consen 141 FEPWLRRLL 149 (252)
T ss_pred HHHHHHHHc
Confidence 566666665
No 48
>COG3285 Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
Probab=27.93 E-value=2.1e+02 Score=28.21 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=47.4
Q ss_pred HHHcCceeeeecCCCC----CC-cEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeee
Q 017214 239 CLYAGINISGTNGEVM----PG-QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 313 (375)
Q Consensus 239 l~~~GI~ve~~h~E~g----pG-Q~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~S 313 (375)
++...|++.-+.++.. |+ |.=|.|.|..++.-+ .++-+=..+|+.-+..||. +| || .. -|.|+|+=.=
T Consensus 104 ~q~galE~H~w~~~~~~~e~pd~r~VfDLDP~~gv~~~-~vveaA~~lr~~Ld~lGL~-~f-~K--TS--GGKG~Hv~~P 176 (299)
T COG3285 104 AQQGALEFHPWGATIDDLEHPDERIVFDLDPGPGVAFA-EVVEAALELRDLLDELGLV-SF-PK--TS--GGKGLHVYVP 176 (299)
T ss_pred HHhceEEeecCCCcccccCCCCcceeEecCCCCCCCHH-HHHHHHHHHHHHHHHcCCc-cc-ee--cc--CCCeeEEEEe
Confidence 4455566666665554 67 777888887665432 2233334778888999987 45 56 22 4889999888
Q ss_pred ccc
Q 017214 314 TKS 316 (375)
Q Consensus 314 L~~ 316 (375)
|..
T Consensus 177 L~~ 179 (299)
T COG3285 177 LAP 179 (299)
T ss_pred cCC
Confidence 865
No 49
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=26.34 E-value=1.4e+02 Score=23.30 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCC---------C--cEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEee
Q 017214 229 RDIADAHYKACLYAGINISGTNGEVMP---------G--QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSL 294 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~gp---------G--Q~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATF 294 (375)
..++.++.+.+.+.|++|+.++.-.+- . -.|+.+...+ + +.-.+|..+.+++++.|+.+.|
T Consensus 11 a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~----~-~~~~lr~~L~~la~elgvDIav 82 (84)
T cd04871 11 AEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP----A-DLEALRAALLELASELNVDIAF 82 (84)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC----C-CHHHHHHHHHHHhcccCceEEE
Confidence 456777778888999999988876332 2 2344444222 1 3336677888999999998877
No 50
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=25.89 E-value=3.7e+02 Score=25.52 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=59.1
Q ss_pred HcCceeeeecCC----CCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeeccc
Q 017214 241 YAGINISGTNGE----VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS 316 (375)
Q Consensus 241 ~~GI~ve~~h~E----~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~ 316 (375)
..-|++..+.+- --|-+.=|.|.|.+++.-. +++-+=..+|++-.+.||.+ | || .. -|.|+|+.+-|..
T Consensus 80 ~~~lE~H~w~sr~~~~e~PD~lvfDLDP~~~~~f~-~v~~~A~~vr~~L~~lgL~~-f-~K--TS--G~kGlHV~vPl~~ 152 (227)
T cd04861 80 LGAIELHPWLSRADDLERPDRLVFDLDPGPGVPFE-DVVEAALLLRELLDELGLES-F-PK--TS--GGKGLHVYVPLAP 152 (227)
T ss_pred hCcEEeeCCCCCCCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcCC
Confidence 344555444432 2489999999999775433 34455567788889999974 4 55 22 4789999999976
Q ss_pred ccccCCH---HHHHHHHHHHhHhhHHHhhcc
Q 017214 317 MREEGGY---ETIKKAILNLSLRHKEHISAY 344 (375)
Q Consensus 317 ~~~~~g~---n~~~~~iaGl~L~h~~al~a~ 344 (375)
. -+. ..|-++||-.--+..|++...
T Consensus 153 ~---~~~~~~r~fa~~iA~~l~~~~P~~~t~ 180 (227)
T cd04861 153 R---YTWDEVRAFAKALARELARRLPDLFTA 180 (227)
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCchhhhh
Confidence 2 232 345566666513344666433
No 51
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.28 E-value=1.5e+02 Score=28.91 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC--CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecc
Q 017214 229 RDIADAHYKACLYAGINISGTNGEV--MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~--gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmp 296 (375)
--|+.++.+.|.+.|++|+.+.... ..|+|.+.+.-.-- ...+++-.++..+.+++++.|+.+++-.
T Consensus 17 pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~l~l~i~l~~ 85 (286)
T PRK06027 17 PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEEFEMDWRLLD 85 (286)
T ss_pred CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHhCCEEEEcc
Confidence 3567777778889999999998887 77888776553310 1112255788999999999999987653
No 52
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.78 E-value=2e+02 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHhhhcCCCcceEeeeeeEEE
Q 017214 165 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 194 (375)
Q Consensus 165 ~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L 194 (375)
=||..++.+++.+. -.|+++||.-
T Consensus 34 wPRRT~QDvikAlp------glgi~l~FvQ 57 (95)
T COG4519 34 WPRRTAQDVIKALP------GLGIVLEFVQ 57 (95)
T ss_pred CchhHHHHHHHhCc------CCCeEEEeee
Confidence 58999999998874 3566777754
No 53
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=24.07 E-value=1.1e+02 Score=34.24 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=41.8
Q ss_pred cCceeeeecCCCCCCcEEEEcCCChH------HHHhHHHHHHHHHHHHHHHHcCCeEeec
Q 017214 242 AGINISGTNGEVMPGQWEYQVGPSVG------IDAGDHIWCSRYLLERITEQAGVVLSLD 295 (375)
Q Consensus 242 ~GI~ve~~h~E~gpGQ~Ei~l~~~~~------l~aaD~~~~~K~~vk~VA~~~Gl~ATFm 295 (375)
...++..-|-+.--+..||-++|+|. +.+.=.+..++.-+.+||++||+.++|.
T Consensus 423 l~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 423 LSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp CCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred HcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 56677666666645678999999974 6677788899999999999999999985
No 54
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=22.91 E-value=6.6e+02 Score=23.84 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=58.6
Q ss_pred HHcCceeeeecC----CCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecc
Q 017214 240 LYAGINISGTNG----EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK 315 (375)
Q Consensus 240 ~~~GI~ve~~h~----E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~ 315 (375)
+..-|++..+.+ ---|.+.=|.|.|.+++.-. +++.+=..+|++..+.||.+ | || .. -|.|+|+.+-|.
T Consensus 80 n~g~lE~H~w~sr~~~~e~PD~lvfDLDP~~~~~f~-~v~~~A~~vr~~L~~lgL~s-f-~K--TS--G~kGlHv~vPl~ 152 (228)
T cd04865 80 NLGCIELHPWPSRAGDLDHPDELVIDLDPQPGTSFE-DVVEVALLVREVLDELGLRG-Y-PK--TS--GARGLHIYVPIA 152 (228)
T ss_pred HhCcEEeeCCccCcCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcC
Confidence 344455554443 23489999999999775433 34455567899999999974 4 55 22 478999999997
Q ss_pred cccccCCH---HHHHHHHHHHhHhhHHHhh
Q 017214 316 SMREEGGY---ETIKKAILNLSLRHKEHIS 342 (375)
Q Consensus 316 ~~~~~~g~---n~~~~~iaGl~L~h~~al~ 342 (375)
.. -+. ..|-++||-.--+..|.+.
T Consensus 153 ~~---~~~~~~r~fa~~iA~~l~~~~P~~~ 179 (228)
T cd04865 153 PR---YTFEEVRRFAELLAREVERRLPDLA 179 (228)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHCchhh
Confidence 62 232 2355666665123336653
No 55
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=21.51 E-value=9.7e+02 Score=27.34 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=59.2
Q ss_pred HHHcCceeeeecCCC----CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeec
Q 017214 239 CLYAGINISGTNGEV----MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYST 314 (375)
Q Consensus 239 l~~~GI~ve~~h~E~----gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL 314 (375)
.+..-|++..+.+-. -|.+.=|.|.|.+++.- +.++-+=..+|++-.+.||.. | || .. -|.|+||.+-|
T Consensus 664 an~~~iE~H~w~~~~~~~~~Pd~lvfDLDP~~~~~f-~~v~~aA~~~r~~L~~lgL~s-f-~K--TS--G~kGlHv~vPl 736 (860)
T PRK05972 664 AQMGAVELHTWNATPDRIEVPDRLVFDLDPGPGVPW-KAVVEAARLMRTRLDELGLES-F-LK--TS--GGKGLHVVVPL 736 (860)
T ss_pred HHhCcEEeecCCCCCCCCCCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCce-e-eE--CC--CCCeEEEEEEc
Confidence 344456666555433 48999999999877543 334455567899999999973 4 55 22 47899999999
Q ss_pred ccccccCCHH---HHHHHHHHHhHhhHHHh
Q 017214 315 KSMREEGGYE---TIKKAILNLSLRHKEHI 341 (375)
Q Consensus 315 ~~~~~~~g~n---~~~~~iaGl~L~h~~al 341 (375)
... -+.+ .|-++||-.--+..|.+
T Consensus 737 ~~~---~~~~~~~~fa~~ia~~l~~~~P~~ 763 (860)
T PRK05972 737 ARR---LDWDEVKAFAQAVCQHMARDLPER 763 (860)
T ss_pred CCC---CCHHHHHHHHHHHHHHHHHHCchh
Confidence 762 2323 35555655412233555
No 56
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=21.00 E-value=97 Score=31.13 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=58.5
Q ss_pred CCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC----------CCccccCCCCCCCCCCCccEEEEeEeceecCCC
Q 017214 74 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL----------PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR 143 (375)
Q Consensus 74 p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~----------~~~~fDgss~g~~~~~~~D~~l~PD~l~~~Pw~ 143 (375)
++..+..++|++.|++-+ -||-.+...++...=+.+ |.+-|..|-+|....|-++.++ +.+..+||.
T Consensus 236 ~~~~~~~i~YvLPDF~T~-k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~--esl~~~Pe~ 312 (400)
T KOG0680|consen 236 FQENKVMIDYVLPDFSTS-KRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVL--ESLSMLPEE 312 (400)
T ss_pred cccceeEEEEecCCcccc-cceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHH--HHHHhCHHH
Confidence 455689999999999998 999999644443222221 4455655555544333222211 126778886
Q ss_pred CCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhh
Q 017214 144 GGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSK 178 (375)
Q Consensus 144 ~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~ 178 (375)
-. ..++-++.--.|.-.--.-|..|++-+..+.
T Consensus 313 ~~--p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~ 345 (400)
T KOG0680|consen 313 VR--PLLLENIVCIGGNSNFPGFRQRLARELRSLL 345 (400)
T ss_pred HH--HHHHhcEEEecCccCCcchHHHHHHHHHhhC
Confidence 42 2233334334565444467777887777654
No 57
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.58 E-value=8.4e+02 Score=24.20 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCCC-cE-EEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCc
Q 017214 229 RDIADAHYKACLYAGINISGTNGEVMPG-QW-EYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGA 306 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~gpG-Q~-Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~Gs 306 (375)
+++.. +.+.+.+.||..--+.++.-|- -+ |+...+.+ .+++.+ .-|.++|+++|+..||.|=.|..
T Consensus 52 ~~l~~-~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~--~~~~~l----~~iG~~a~~~~iRLS~Hp~qfi~----- 119 (312)
T TIGR00629 52 RDTMK-TLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVT--FAQKEL----REIGELAKTHQHRLTFHPGQFTQ----- 119 (312)
T ss_pred HHHHH-HHHHHHHcCCcEEecCccccCcCcCchhhhhHHH--HHHHHH----HHHHHHHHHcCeEEEECCCcccc-----
Confidence 34433 4456789999999999988762 22 22111111 223322 34788999999999999987764
Q ss_pred eeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccc
Q 017214 307 GCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGE 346 (375)
Q Consensus 307 G~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~ 346 (375)
|.. ...++.+..|.-| ..|+.-+-++..
T Consensus 120 -------LnS----~~~evv~~Si~~L-~~ha~~l~~mg~ 147 (312)
T TIGR00629 120 -------FTS----PRESVVKSAIRDL-AYHDEMLSAMKL 147 (312)
T ss_pred -------CCC----CCHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 222 2345777888888 888888777753
No 58
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=20.22 E-value=9e+02 Score=25.97 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccccCCHH---HHHHHH
Q 017214 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYE---TIKKAI 330 (375)
Q Consensus 254 gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~~g~n---~~~~~i 330 (375)
-|.+.=|.|.|.+++.- +.++-+=..+|++-.+.||.+ | || .. -|.|+|+.+-|... .-+.+ .|-++|
T Consensus 390 ~Pd~~v~DLDP~~~~~f-~~v~~~A~~~r~~L~~~gl~~-~-~K--tS--G~kGlhv~vPl~~~--~~~~~~~~~fa~~~ 460 (552)
T TIGR02776 390 KPDRIVFDLDPPPGVAF-KLAVEAAQLMKQLLDELGLVS-F-VK--TS--GGKGLHVVVPLRPN--TFTWDETKLFAKAI 460 (552)
T ss_pred CCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcCCC--CCCHHHHHHHHHHH
Confidence 58999999999876533 334444456899999999973 4 56 22 47899999999761 12322 345556
Q ss_pred HHHhHhhHHHhh
Q 017214 331 LNLSLRHKEHIS 342 (375)
Q Consensus 331 aGl~L~h~~al~ 342 (375)
|-.--+..|.+.
T Consensus 461 a~~~~~~~P~~~ 472 (552)
T TIGR02776 461 AEYLARQFPERF 472 (552)
T ss_pred HHHHHHHCccee
Confidence 654123345553
Done!