Query 017214
Match_columns 375
No_of_seqs 216 out of 1617
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 8.7E-82 3E-86 626.9 28.7 306 62-375 10-316 (370)
2 2d3a_A Glutamine synthetase; l 100.0 1.3E-80 4.4E-85 615.9 26.9 301 74-375 14-315 (356)
3 2ojw_A Glutamine synthetase; a 100.0 1.1E-78 3.8E-83 607.2 29.7 308 61-375 30-342 (384)
4 3qaj_A Glutamine synthetase; A 100.0 4.1E-76 1.4E-80 598.3 16.0 296 60-375 5-320 (444)
5 3ng0_A Glutamine synthetase; G 100.0 1.2E-74 4.1E-79 592.2 26.5 300 60-375 4-346 (473)
6 4hpp_A Probable glutamine synt 100.0 8.1E-73 2.8E-77 573.6 19.6 276 77-375 6-312 (443)
7 1f52_A Glutamine synthetase; A 100.0 4.6E-72 1.6E-76 572.9 24.9 298 62-375 3-343 (468)
8 4acf_A Glutamine synthetase 1; 100.0 2.1E-71 7.3E-76 570.5 24.9 299 61-375 14-359 (486)
9 2j9i_A Glutamate-ammonia ligas 100.0 5.5E-64 1.9E-68 506.7 5.9 276 61-375 2-305 (421)
10 3o6x_A Glutamine synthetase; t 100.0 5.6E-51 1.9E-55 426.5 13.2 235 116-363 129-407 (729)
11 2gwd_A Glutamate cysteine liga 98.1 2.2E-05 7.7E-10 79.5 13.2 152 165-348 16-213 (449)
12 1r8g_A Hypothetical protein YB 97.8 0.00016 5.5E-09 71.2 12.9 130 183-348 11-168 (372)
13 3ln6_A Glutathione biosynthesi 93.9 0.24 8.1E-06 53.1 10.5 124 248-372 54-225 (750)
14 3ln7_A Glutathione biosynthesi 91.5 0.79 2.7E-05 49.2 10.5 124 248-372 53-230 (757)
15 1va6_A Glutamate--cysteine lig 84.8 2.3 7.8E-05 43.6 8.1 94 248-345 56-198 (518)
16 1nxi_A Conserved hypothetical 79.0 5.6 0.00019 33.1 7.1 90 171-291 22-114 (132)
17 3nzt_A Glutamate--cysteine lig 77.9 6.1 0.00021 40.4 8.4 96 249-345 68-204 (525)
18 1zpv_A ACT domain protein; str 63.2 5.1 0.00017 30.1 3.1 65 231-297 18-82 (91)
19 2fao_A Probable ATP-dependent 44.1 1.4E+02 0.0049 28.2 10.3 70 240-316 112-186 (309)
20 3ose_A Serine/threonine-protei 38.3 41 0.0014 27.2 4.8 63 228-290 39-120 (120)
21 1v5s_A MAP/microtubule affinit 37.7 81 0.0028 25.9 6.6 63 228-290 39-120 (126)
22 2iru_A Putative DNA ligase-lik 33.2 1E+02 0.0036 29.1 7.3 115 241-373 107-238 (303)
23 2nyi_A Unknown protein; protei 27.8 57 0.002 28.2 4.3 66 229-297 104-175 (195)
24 1u8s_A Glycine cleavage system 25.1 61 0.0021 27.7 4.0 66 230-297 105-178 (192)
25 3tc3_A UV damage endonuclease; 23.2 1.1E+02 0.0036 29.1 5.5 62 234-301 64-127 (310)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-82 Score=626.91 Aligned_cols=306 Identities=54% Similarity=1.012 Sum_probs=262.7
Q ss_pred HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecC
Q 017214 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 141 (375)
Q Consensus 62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~P 141 (375)
..+++|++. ++.++..|+|+|+|++|. +|||++++....+.++++|+|+||||++|+.+++++|++|+||.++++|
T Consensus 10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G~-lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P 85 (370)
T 3fky_A 10 QILQKYLEL---DQRGRIIAEYVWIDGTGN-LRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP 85 (370)
T ss_dssp --------------CCCEEEEEEEECSSSC-EEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred HHHHHHhCc---ccCCeEEEEEEEEcCCCC-eEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence 567788887 455799999999999996 9999998776666677778999999999998889999999999999999
Q ss_pred CCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCC
Q 017214 142 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA 221 (375)
Q Consensus 142 w~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~ 221 (375)
|+++++++|+||++++||+|++.|||++|++++++++ |+++++|+|+|||||+.+. .+.+||.++.|.++++||+..
T Consensus 86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~ 162 (370)
T 3fky_A 86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV 162 (370)
T ss_dssp TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence 9997799999999999999999999999999999876 9999999999999999763 366888777889999999987
Q ss_pred ccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCC
Q 017214 222 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG 301 (375)
Q Consensus 222 ~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~ 301 (375)
+.+..+.++++++|+++|+++||+||++|||+|||||||++.|+++|++||+++++|++||+||++||++|||||||+.+
T Consensus 163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g 242 (370)
T 3fky_A 163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG 242 (370)
T ss_dssp STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence 76665679999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCceeeeeeecccccccCCHHHHHHHHHHHhH-hhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSL-RHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 302 ~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L-~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+++|||||+|+|||++++++|.+.+++||+|| + +|+++|+||+.||||||+|++|||++.+++||++||+|+|
T Consensus 243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl-~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~i 316 (370)
T 3fky_A 243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKL-SKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSI 316 (370)
T ss_dssp SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHH-HHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSE
T ss_pred CCCcccceeeeccccccCCCCHHHHHHHHHHH-HHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeE
Confidence 37999999999999876567888899999999 6 9999999999999999999999998435899999999985
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=1.3e-80 Score=615.94 Aligned_cols=301 Identities=76% Similarity=1.365 Sum_probs=276.5
Q ss_pred CCCCeeEEEEEEEecccccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEeceecCCCCCCeEEEEEE
Q 017214 74 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICD 153 (375)
Q Consensus 74 p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~~Pw~~~~~a~Vlcd 153 (375)
++.+++.|+|+|+|+.|+|+|||+++++.+.+.++++++++||||++++..++++|++|+||.++++||+++++++|+||
T Consensus 14 ~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~P~~~~~~a~v~cd 93 (356)
T 2d3a_A 14 DTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD 93 (356)
T ss_dssp GTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEEEEEECTTTCTTCEEEEEE
T ss_pred CCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEEEEEEEEECCcCCCCceEEEEE
Confidence 45578999999999999789999999998888887778999999999988778999999999999999998679999999
Q ss_pred eecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHH
Q 017214 154 TYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIAD 233 (375)
Q Consensus 154 ~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~ 233 (375)
++++||+|++.|||++|+|+++++++.|+++++|+|+|||||+++.+.+++|+..+.|.++++||+..+.+..+.+++++
T Consensus 94 ~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~ 173 (356)
T 2d3a_A 94 CYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVD 173 (356)
T ss_dssp EECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTCCSTTTCCCHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcCcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999997654455666556777889999988877656799999
Q ss_pred HHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcC-CCCCCceeeeee
Q 017214 234 AHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE-GDWNGAGCHTNY 312 (375)
Q Consensus 234 ~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~-~~~~GsG~HvH~ 312 (375)
+|+++|+++||+||++|||+|||||||++.|+++|++||+++++|++||+||++||++|||||||+. + ++|||||+|+
T Consensus 174 ~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~d-~~GSG~H~H~ 252 (356)
T 2d3a_A 174 AHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGD-WNGAGAHTNY 252 (356)
T ss_dssp HHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCSS-SCCCBEEEEE
T ss_pred HHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCccCCC-CCCCcceEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 6 7999999999
Q ss_pred ecccccccCCHHHHHHHHHHHhHhhHHHhhccccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 313 STKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 313 SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
||++.++++|.|+|..++.+++++|+++|+||++||||||+|++|||.+.+++||.+||+|+|
T Consensus 253 Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG~~NRsa~i 315 (356)
T 2d3a_A 253 STESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASV 315 (356)
T ss_dssp ECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSE
T ss_pred chhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEeccCCeeeE
Confidence 998754456889999888887799999999999999999999999997558999999999985
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=1.1e-78 Score=607.24 Aligned_cols=308 Identities=51% Similarity=0.982 Sum_probs=271.7
Q ss_pred HHHHHHHHhccCCCCCCeeEEEEEEEeccc-ccccceeeeeccCCCCCCCCCCccccCCCCCCCCCCCccEEEEeEecee
Q 017214 61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTG-IDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFK 139 (375)
Q Consensus 61 ~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g-~DlrGk~~~~~vp~~~~~~~~~~~fDgss~g~~~~~~~D~~l~PD~l~~ 139 (375)
.+.+++||+.+ +. ++..|+|+|+|++| + +|||++++....+.++++|+++||||++++...+++|++|+||.+++
T Consensus 30 ~~~l~~~l~~~--~~-~~~~v~~~~~D~~G~~-~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~~l~PDt~~~ 105 (384)
T 2ojw_A 30 KGIKQVYMSLP--QG-EKVQAMYIWIDGTGEG-LRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFR 105 (384)
T ss_dssp HHHHHHHHTSC--CC-SCEEEEEEEECTTSSC-EEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEEEEEE
T ss_pred HHHHHHHHhCC--CC-CcEEEEEEEECCCCCe-eeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcEEEEeeEEEE
Confidence 47889999886 43 68999999999999 8 99999986655555555689999999998877889999999999999
Q ss_pred cCCCCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcc
Q 017214 140 DPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYC 219 (375)
Q Consensus 140 ~Pw~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~ 219 (375)
+||+++++++|+||++++||+|++.|||++|+|++++++ |+++++|+|+|||||+++.. +.+|+..+.+.++++||+
T Consensus 106 ~Pw~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~~~~g~p~~~g~y~~ 182 (384)
T 2ojw_A 106 DPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYC 182 (384)
T ss_dssp CTTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CCS-BTTCCTTSCCSCSSSCTT
T ss_pred CCCCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCCC-cccccCCCccCCCCCCCc
Confidence 999876799999999999999999999999999999987 89999999999999987632 446666567888999999
Q ss_pred CCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCc
Q 017214 220 GAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPI 299 (375)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~ 299 (375)
..+.++.+.++++++|+++|+++||+||++|+|+|||||||++.|+++|++||+++++|++||+||++||+.|||||||+
T Consensus 183 ~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~ 262 (384)
T 2ojw_A 183 GVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPI 262 (384)
T ss_dssp CCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 88777556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcc----ccccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 300 EGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 300 ~~~~~GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~----~~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
.++++|||||+|+||+++++++|.|+|+++++||+++|+++|+|| ++||||||+|++|||.+.+++||++||+++|
T Consensus 263 ~~d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sWG~~NRsa~i 342 (384)
T 2ojw_A 263 PGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASI 342 (384)
T ss_dssp CSSSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSE
T ss_pred CCCCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEeecccCCceE
Confidence 764699999999999875545689999999999988999999999 4799999999999887568999999999985
No 4
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=4.1e-76 Score=598.26 Aligned_cols=296 Identities=25% Similarity=0.358 Sum_probs=259.1
Q ss_pred hHHHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC--CCccccCCCC-CCCCCCCccEEEEeEe
Q 017214 60 TVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL--PKWNYDGSST-GQAPGEDSEVILYPQA 136 (375)
Q Consensus 60 ~~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~--~~~~fDgss~-g~~~~~~~D~~l~PD~ 136 (375)
..+++.++++.+ ++..|++.|+|++|+ +|||+. |++.|++. .|++||||++ |+..++++|++|+||+
T Consensus 5 ~~~~~~~~~~~~-----~i~~v~l~~~D~~G~-~r~k~i----p~~~~~~~~~~G~~fdgssi~g~~~~~~~D~~l~PD~ 74 (444)
T 3qaj_A 5 TREDIEKLVKEE-----NVKYIRLQFTDILGT-IKNVEI----PVSQLGKALDNKVMFDGSSIEGFVRIEESDMYLYPDL 74 (444)
T ss_dssp CHHHHHHHHHHH-----TCCEEEEEEECSSSC-EEEEEE----EGGGHHHHHTTCCEEETTTSTTSSCTTCCEEECCBCG
T ss_pred CHHHHHHHHHhC-----CCCEEEEEEECCCCC-EEEEEE----eHHHHHHHHhCCccccCccccCccCCCCCCEEEEEec
Confidence 357788898887 678888888887776 777666 57777654 5899999998 8888889999999998
Q ss_pred --ceecCCCCC--CeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCc-ceEeeeeeEEEeccCCCCCCCCCCCCCC
Q 017214 137 --IFKDPFRGG--NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV-PWFGIEQEYTLLQQNVKWPLGWPVGAYP 211 (375)
Q Consensus 137 --l~~~Pw~~~--~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~-~~vg~E~EF~L~~~~~~~~~g~~~~~~~ 211 (375)
++++||.++ ++++|+||++++||+|++.|||++|++++++++++|++ +++|+|+|||||+.+++ |.|. ..+
T Consensus 75 ~T~~~~Pw~~~~~~~a~v~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~ 150 (444)
T 3qaj_A 75 NTFVIFPWTAEKGKVARFICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LEL 150 (444)
T ss_dssp GGCEEEHHHHHHHCEEEEEBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEE
T ss_pred CceEECccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcC
Confidence 999999875 59999999999999999999999999999999999999 99999999999997643 2221 245
Q ss_pred CCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCe
Q 017214 212 GPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (375)
Q Consensus 212 ~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ 291 (375)
.++++||+..+.+. ..+++++|.++|+++||+||++|||+|||||||++.|+++|++||+++++|++||+||++||++
T Consensus 151 ~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~ 228 (444)
T 3qaj_A 151 NDKGGYFDLAPTDL--GENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLH 228 (444)
T ss_dssp SCCCCTTCCTTTSC--CTTHHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred cCCCCccccCCCcc--hHHHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 67788998888775 4566777777899999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCcCCCCCCceeeeeeecccccc-----cC---C-HHHHHHHHHHHhHhhHHHhhccc---cccccCCCCCCCCC
Q 017214 292 LSLDPKPIEGDWNGAGCHTNYSTKSMRE-----EG---G-YETIKKAILNLSLRHKEHISAYG---EGNERRLTGKHETA 359 (375)
Q Consensus 292 ATFmpKP~~~~~~GsG~HvH~SL~~~~~-----~~---g-~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~~~ap 359 (375)
|||||||+.+. +|||||+|+|||+..+ ++ | +...++||||| |+|+++++||+ +||||||+|++|||
T Consensus 229 aTFmpKP~~~~-~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~pg~~AP 306 (444)
T 3qaj_A 229 ATFMPKPLFGV-NGSGMHCNLSLFKNGVNAFFDENADLQLSETAKHFIAGI-VKHATSFTAVTNPTVNSYKRLVPGYEAP 306 (444)
T ss_dssp EECCSCSSTTS-CCCCEEEEEEEEETTEETTCCTTSSSSCCHHHHHHHHHH-HHTHHHHHHHHSCSSTHHHHSCTTSSSS
T ss_pred EEEcCCcCCCC-CCCcceeeeccccCCCcccCCCCcccchHHHHHHHHHHH-HHHHHHHHHHHCCCCcccccCCCCCcCC
Confidence 99999999995 9999999999997210 01 1 34668999999 99999999997 49999999999999
Q ss_pred CCCceeeecCCCCCCC
Q 017214 360 SIDSFSWVCSEDGPIF 375 (375)
Q Consensus 360 ~~~~~~WG~~NRsaa~ 375 (375)
+ +++||.+||+++|
T Consensus 307 ~--~~~Wg~~NRsa~i 320 (444)
T 3qaj_A 307 C--YVAWSAQNRSPLI 320 (444)
T ss_dssp C--BCCEESSCSSSSE
T ss_pred C--cceeecCCCcceE
Confidence 9 9999999999985
No 5
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=1.2e-74 Score=592.23 Aligned_cols=300 Identities=22% Similarity=0.311 Sum_probs=259.4
Q ss_pred hHHHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEeE
Q 017214 60 TVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQ 135 (375)
Q Consensus 60 ~~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~-~--~~~~fDgss~-g~~~~~~~D~~l~PD 135 (375)
..+++.++++.+ ++..|++.|+|++|+ +|||+. |++.|.+ + .|++||||++ |+..++++|++|+||
T Consensus 4 ~~~~~~~~~~~~-----~i~~V~l~f~D~~G~-~r~k~i----p~~~~~~~~~~~G~~fdgss~~g~~~~~~sD~~l~PD 73 (473)
T 3ng0_A 4 TPQEVLKWIQDE-----NIKIIDLKFIDTPGI-WQHCSF----YYDQLDENSFTEGIPFDGSSIRGWKAINESDMCMVPD 73 (473)
T ss_dssp CHHHHHHHHHHT-----TCCEEEEEEECSSSC-EEEEEE----EGGGCCGGGGTTCEEEETTSSTTSCCGGGCEEEEEEC
T ss_pred CHHHHHHHHHhC-----CCCEEEEEEECCCCC-EEEEEE----eHHHHHHHHHhCCCccccccccccccCCCCcEEEEee
Confidence 457888999987 678888888887776 666665 6777766 3 6899999998 888778999999999
Q ss_pred e--ceecCCCCCCeEEEEEEeecC-CCccCCCCHHHHHHHHHHhhhcCCC--cceEeeeeeEEEeccCC-----------
Q 017214 136 A--IFKDPFRGGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNV----------- 199 (375)
Q Consensus 136 ~--l~~~Pw~~~~~a~Vlcd~~~~-dG~P~~~~PR~vL~~~l~~l~~~G~--~~~vg~E~EF~L~~~~~----------- 199 (375)
+ ++++||.++++++|+||++++ ||+|++.|||++|+++++++++.|+ ++++|+|+|||||+.+.
T Consensus 74 ~~T~~~~Pw~~~~~a~v~cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~ 153 (473)
T 3ng0_A 74 PNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYF 153 (473)
T ss_dssp GGGCEECTTCSSCEEEEEEEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEE
T ss_pred cCccEECCcCCCCcEEEEEEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeeccccccccccccc
Confidence 8 999999987799999999998 9999999999999999999998765 89999999999998521
Q ss_pred --CCCCCCCC---------CCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCC-CCcEEEEcCCChH
Q 017214 200 --KWPLGWPV---------GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVG 267 (375)
Q Consensus 200 --~~~~g~~~---------~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~g-pGQ~Ei~l~~~~~ 267 (375)
..+.+|+. +..+.++++||+..+.+. ..+++++|+++|+++||+||++|||+| ||||||++.|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~ 231 (473)
T 3ng0_A 154 ADSVEGRWNTGREEEGGNLGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKL 231 (473)
T ss_dssp EECTTCGGGTTCCCTTCCCCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEH
T ss_pred ccccccccccccccccCCCCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCH
Confidence 00111211 234566788988888876 688999999999999999999999999 9999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc-----c--CC-HHHHHHHHHHHhHhhHH
Q 017214 268 IDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-----E--GG-YETIKKAILNLSLRHKE 339 (375)
Q Consensus 268 l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~-----~--~g-~n~~~~~iaGl~L~h~~ 339 (375)
|++||+++++|++||+||++||++|||||||+.++ +|||||+|+|||+..+ + +| +..+++||||| |+|++
T Consensus 232 l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~~-~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGl-L~h~~ 309 (473)
T 3ng0_A 232 VNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFND-NGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGI-LKHAP 309 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCSCSSTTS-CCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEcCcccCCC-CCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999995 9999999999996311 0 01 24568999999 99999
Q ss_pred Hhhccc---cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 340 HISAYG---EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 340 al~a~~---~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+|+||+ +||||||+|++|||+ +++||.+||+++|
T Consensus 310 ~l~a~~~Pt~NSYkRL~pg~~AP~--~~~Wg~~NRsa~i 346 (473)
T 3ng0_A 310 ALLAFTNPTTNSYKRLVPGFEAPV--NLAYSQGNRSASV 346 (473)
T ss_dssp HHHHHHSCSTTHHHHBBTTTBCCC--BCCEEESCTTSSE
T ss_pred HHHHHhCCCcchhhcccCCCcCcc--ceeeeccCCcCce
Confidence 999998 499999999999999 9999999999985
No 6
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.1e-73 Score=573.64 Aligned_cols=276 Identities=17% Similarity=0.143 Sum_probs=239.3
Q ss_pred CeeEEEEEEEecccccccceeeeeccCCCCCCCC--CCccccCCC--C-CCCC-------CCCccEEEEeEe--ceecCC
Q 017214 77 DKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL--PKWNYDGSS--T-GQAP-------GEDSEVILYPQA--IFKDPF 142 (375)
Q Consensus 77 ~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~--~~~~fDgss--~-g~~~-------~~~~D~~l~PD~--l~~~Pw 142 (375)
++..|++.|+|++|+ +|||+. |++.+++. .|++||++. + ++.. .+++|++|+||+ ++++||
T Consensus 6 ~v~~v~l~~~D~~G~-~r~k~v----p~~~~~~~~~~G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw 80 (443)
T 4hpp_A 6 PVRLVSFVTTDLAGI-TRGRSL----PLATLEEQLASGCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQ 80 (443)
T ss_dssp CCCEEEEEEECTTSC-EEEEEE----EGGGHHHHHTTCEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECC
T ss_pred CCCEEEEEEECCCCC-EEEEEE----EHHHHHHHHhCCcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCc
Confidence 467888888887776 777766 56666553 578888752 2 3221 245999999998 999999
Q ss_pred CCC----CeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCc
Q 017214 143 RGG----NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYY 218 (375)
Q Consensus 143 ~~~----~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y 218 (375)
.++ ++++|+||++++||+|++.|||++|++++++++++|+++++|+|+|||||+. .|.++++||
T Consensus 81 ~~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y 148 (443)
T 4hpp_A 81 GPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAF 148 (443)
T ss_dssp CSSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTT
T ss_pred ccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccC
Confidence 982 5999999999999999999999999999999999999999999999999962 234567899
Q ss_pred cCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccC
Q 017214 219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKP 298 (375)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP 298 (375)
+..+.+. .++++++|+++|+++||+|+++|||+|||||||++.|+++|++||+++++|++||+||++||++|||||||
T Consensus 149 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP 226 (443)
T 4hpp_A 149 SLQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLP 226 (443)
T ss_dssp CHHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSS
T ss_pred CCCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 8877665 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeeeecccccc------cC---C-HHHHHHHHHHHhHhhHHHhhccc---cccccCCCCCCCCCCCCcee
Q 017214 299 IEGDWNGAGCHTNYSTKSMRE------EG---G-YETIKKAILNLSLRHKEHISAYG---EGNERRLTGKHETASIDSFS 365 (375)
Q Consensus 299 ~~~~~~GsG~HvH~SL~~~~~------~~---g-~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~~~ap~~~~~~ 365 (375)
+.+ .+|||||+|+|||+.++ ++ | +..+++||||| |+|+++|+||+ +||||||+|++|||+ +++
T Consensus 227 ~~~-~~GsG~H~h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~P~~NSYkRL~pg~~AP~--~~~ 302 (443)
T 4hpp_A 227 APG-AVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGV-LAHLPALCALTAPTAASYLRLKPHHWSAA--YAC 302 (443)
T ss_dssp STT-CCCCCEEEEEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSGGGHHHHSCSTTCCC--BCC
T ss_pred CCC-CCcccceeeeeeecCCCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCCcchhccCCCCcCCC--cce
Confidence 999 59999999999998421 00 1 23568999999 99999999997 499999999999999 999
Q ss_pred eecCCCCCCC
Q 017214 366 WVCSEDGPIF 375 (375)
Q Consensus 366 WG~~NRsaa~ 375 (375)
||.+||+++|
T Consensus 303 WG~~NRsa~i 312 (443)
T 4hpp_A 303 LGLRNREAAL 312 (443)
T ss_dssp EESSCTTSSE
T ss_pred eccCCCceeE
Confidence 9999999985
No 7
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=4.6e-72 Score=572.88 Aligned_cols=298 Identities=21% Similarity=0.321 Sum_probs=256.1
Q ss_pred HHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEeEe-
Q 017214 62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA- 136 (375)
Q Consensus 62 ~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~-~--~~~~fDgss~-g~~~~~~~D~~l~PD~- 136 (375)
+++.++++.+ ++..|++.|+| ++|+.|++.+|++.+++ . .|++||||++ |+...+++|++|+||+
T Consensus 3 ~~~~~~~~~~-----~i~~v~~~~~D-----~~G~~r~k~vp~~~~~~~~~~~g~~fdgss~~g~~~~~~sD~~l~PD~~ 72 (468)
T 1f52_A 3 EHVLTMLNEH-----EVKFVDLRFTD-----TKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDAS 72 (468)
T ss_dssp HHHHHHHHHT-----TCCEEEEEEEC-----TTSCEEEEEEEGGGCCHHHHHHCEEEEGGGSTTSCCSSCCEEEEEECGG
T ss_pred HHHHHHHHhC-----CCCEEEEEEEC-----CCCCEEEEEEEHHHHHHHHhhCceeeccccccccccCCCCCEEEEEecC
Confidence 5677888886 56777777665 55555556667888887 3 6899999988 8877889999999998
Q ss_pred -ceecCCCCCCeEEEEEEeecC-CCccCCCCHHHHHHHHHHhhhcCCC--cceEeeeeeEEEeccCC-----C-------
Q 017214 137 -IFKDPFRGGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNV-----K------- 200 (375)
Q Consensus 137 -l~~~Pw~~~~~a~Vlcd~~~~-dG~P~~~~PR~vL~~~l~~l~~~G~--~~~vg~E~EF~L~~~~~-----~------- 200 (375)
++++||.++++++|+||++++ +|+|++.|||++|++++++++++|+ ++++|+|+|||||+.+. +
T Consensus 73 T~~~~Pw~~~~~~~v~~d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~ 152 (468)
T 1f52_A 73 TAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAID 152 (468)
T ss_dssp GCEECSSCSSCEEEEEEEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEE
T ss_pred CcEEccccCCCceEEEEEEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCcccccccc
Confidence 999999876799999999999 7999999999999999999999999 89999999999998531 0
Q ss_pred -CCCCCCC---------CCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCC-cEEEEcCCChHHH
Q 017214 201 -WPLGWPV---------GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEYQVGPSVGID 269 (375)
Q Consensus 201 -~~~g~~~---------~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpG-Q~Ei~l~~~~~l~ 269 (375)
...+|+. +..+..+++||+..+.+. ..+++++|+++|+++||+|++.|||+||| ||||++.|+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~ 230 (468)
T 1f52_A 153 DIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTK 230 (468)
T ss_dssp CTTCGGGGGCCCTTCCCCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHH
T ss_pred ccccccCCCccccccCCCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHH
Confidence 0011211 234667888999988876 68999999999999999999999999996 9999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc----cCC----HHHHHHHHHHHhHhhHHHh
Q 017214 270 AGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE----EGG----YETIKKAILNLSLRHKEHI 341 (375)
Q Consensus 270 aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~----~~g----~n~~~~~iaGl~L~h~~al 341 (375)
+||+++++|++||+||++||++|||||||+.++ +|||||+|+|||+..+ +++ +.++++||||| |+|+++|
T Consensus 231 aAD~~~~~k~~vk~vA~~hGl~atFmpKP~~g~-~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGl-l~h~~~l 308 (468)
T 1f52_A 231 KADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD-NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAI 308 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCSCSSTTS-CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCC-CCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHH-HHHHHHh
Confidence 999999999999999999999999999999995 9999999999998311 011 24578999999 9999999
Q ss_pred hccc---cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 342 SAYG---EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 342 ~a~~---~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
+||+ +||||||+|++|||+ +++||.+||++++
T Consensus 309 ~a~~ap~~NSYkRL~pg~eAP~--~i~wg~~NRsa~i 343 (468)
T 1f52_A 309 NALANPTTNSYKRLVPGYEAPV--MLAYSARNRSASI 343 (468)
T ss_dssp HHHHSCSGGGGGTSSSCSSCCC--EEEEESSCTTEEE
T ss_pred HhHhcCCccchhccCCCCcCcC--cceeccCCcccce
Confidence 9996 499999999999999 9999999999864
No 8
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=2.1e-71 Score=570.53 Aligned_cols=299 Identities=23% Similarity=0.298 Sum_probs=256.7
Q ss_pred HHHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEeEe
Q 017214 61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA 136 (375)
Q Consensus 61 ~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~-~--~~~~fDgss~-g~~~~~~~D~~l~PD~ 136 (375)
.+++.++++.+ ++..|++.|+|+.|+ +|||+. |++.|.+ + .|++||||++ |+..++++|++|+||+
T Consensus 14 ~edv~~~i~~~-----~I~~V~l~f~D~~G~-~r~k~i----p~~~~~~~~~~~G~~fdgssi~G~~~~~~sD~~l~PD~ 83 (486)
T 4acf_A 14 PDDVFKLAKDE-----KVEYVDVRFCDLPGI-MQHFTI----PASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDP 83 (486)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEEECSSSC-EEEEEE----EGGGCSHHHHHTCEEEEGGGSTTSCCGGGCEEEEEECG
T ss_pred HHHHHHHHHHC-----CCcEEEEEEECCCCc-EEEEEE----EHHHHHHHHHHCCCeeecccccccccCCCCCEEEEEcc
Confidence 47788898887 678888888877776 666665 6787864 3 6899999998 8888889999999998
Q ss_pred --ceecCCCCCCeEEEEEEeecC-CCccCCCCHHHHHHHHHHhhhcC--CCcceEeeeeeEEEeccCC-----C------
Q 017214 137 --IFKDPFRGGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSKVS--AEVPWFGIEQEYTLLQQNV-----K------ 200 (375)
Q Consensus 137 --l~~~Pw~~~~~a~Vlcd~~~~-dG~P~~~~PR~vL~~~l~~l~~~--G~~~~vg~E~EF~L~~~~~-----~------ 200 (375)
++++||.+++++.|+|+++++ +|+|++.|||++|+++++++++. |+++++|+|+|||||+... +
T Consensus 84 ~T~~~~Pw~~~~~~~v~~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~ 163 (486)
T 4acf_A 84 ETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEV 163 (486)
T ss_dssp GGCEECSSCSSCEEEEEEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEE
T ss_pred ceeEECCcCCCccEEEEEEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccC
Confidence 999999998889999999985 89999999999999999999874 5688999999999997421 0
Q ss_pred -------------CCCCCCC-CCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCC-CcEEEEcCCC
Q 017214 201 -------------WPLGWPV-GAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMP-GQWEYQVGPS 265 (375)
Q Consensus 201 -------------~~~g~~~-~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gp-GQ~Ei~l~~~ 265 (375)
.+.|.|. ++.+..+.+||...+.+. ..+++++++++|+++||+|+++|||+|| |||||++.|+
T Consensus 164 ~~~~g~~~~~~~~~~~g~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~ 241 (486)
T 4acf_A 164 DAISGWWNTGAATEADGSPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFN 241 (486)
T ss_dssp ECTTBGGGTTCSBCTTSCBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCE
T ss_pred CccccccCCCCcccCCCCCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCc
Confidence 0112222 223445667888877776 6899999999999999999999999998 9999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc-----cCC----HHHHHHHHHHHhHh
Q 017214 266 VGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-----EGG----YETIKKAILNLSLR 336 (375)
Q Consensus 266 ~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~-----~~g----~n~~~~~iaGl~L~ 336 (375)
++|++||+++++|++||+||++||+.|||||||+.++ +|||||+|+|||+..+ +++ +..+++||||| |+
T Consensus 242 ~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~~-~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-l~ 319 (486)
T 4acf_A 242 SLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGL-LH 319 (486)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSSTTS-CCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHH-HH
T ss_pred chhhhhhHHHHHHHHHHHHHHHcCCeEEEeeccccCC-CcccceeeeeeccCCCccccccccccccchHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999994 9999999999998421 111 35678999999 99
Q ss_pred hHHHhhccc---cccccCCCCCCCCCCCCceeeecCCCCCCC
Q 017214 337 HKEHISAYG---EGNERRLTGKHETASIDSFSWVCSEDGPIF 375 (375)
Q Consensus 337 h~~al~a~~---~NSYkRl~~~~~ap~~~~~~WG~~NRsaa~ 375 (375)
|+++++||+ +||||||+|++|||+ +++||.+||+++|
T Consensus 320 h~~~l~a~~~PtvNSYkRl~pg~~AP~--~~~wg~~NRsa~i 359 (486)
T 4acf_A 320 HAPSLLAFTNPTVNSYKRLVPGYEAPI--NLVYSQRNRSACV 359 (486)
T ss_dssp HHHHHHHHHSCSTTHHHHSSTTSSSCS--BSCEEETCTTSSE
T ss_pred hhhcceeeecCCCcchhccCCCCcCCc--eeEEeccCCCcce
Confidence 999999997 499999999999999 9999999999985
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=5.5e-64 Score=506.71 Aligned_cols=276 Identities=16% Similarity=0.162 Sum_probs=231.6
Q ss_pred HHHHHHHHhccCCCCCCeeEEEEEEEecccccccceeeeeccCCCCCCCC-CCccccCCC-C-CCC-CCCCccEEEEeEe
Q 017214 61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSEL-PKWNYDGSS-T-GQA-PGEDSEVILYPQA 136 (375)
Q Consensus 61 ~~~~~~~l~~~~~p~~~~~~ve~i~vd~~g~DlrGk~~~~~vp~~~~~~~-~~~~fDgss-~-g~~-~~~~~D~~l~PD~ 136 (375)
.+++.++++.+ ++..|+++|+|+.|+ +|||+++ ++.++++ .+++|||++ + |+. .+.++|++|+||+
T Consensus 2 ~~~~~~~l~~~-----~i~~v~~~~~D~~G~-~r~k~ip----~~~~~~~~~g~~~~gs~~~~~~~~~~~~sD~~l~PD~ 71 (421)
T 2j9i_A 2 AEHVLTMLNEH-----AAAFVRFEATDAAGA-SRSKSIP----AQFFEKVIHARGYLEDGEVNAGAAGAAASDIVLMPEL 71 (421)
T ss_dssp HHHHHHHHHHT-----TCSEEEEEEECSSSC-EEEEEEE----GGGCCTTHHHHCEEECGGGSTTTCCTTCCCEEEEECS
T ss_pred HHHHHHHHHhC-----CCCEEEEEEECCCCC-EEEEEEE----HHHHHHhhcCCeeecccCcccccccCCCCCEEEEEec
Confidence 35678888887 678999999998887 8888875 5556444 468999975 4 554 4556999999998
Q ss_pred --ceecCC-CCCCeEEEEEEeecCCCccCCCCHHHHHHHHHHhhhcCCC--cceEeeeeeEEEeccCCCCCCCCCCCCCC
Q 017214 137 --IFKDPF-RGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNVKWPLGWPVGAYP 211 (375)
Q Consensus 137 --l~~~Pw-~~~~~a~Vlcd~~~~dG~P~~~~PR~vL~~~l~~l~~~G~--~~~vg~E~EF~L~~~~~~~~~g~~~~~~~ 211 (375)
++++|| .+ ++++|+|| ||+|++.|||++|++++++++++|+ ++++|+|+|||||+.+.. +.+
T Consensus 72 ~T~~~~Pw~~~-~~a~v~cd----dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~-~~~------- 138 (421)
T 2j9i_A 72 STAAVAAAAAA-ATAAVICD----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEV-INS------- 138 (421)
T ss_dssp SCCEECTTSSS-SEEEEEEE----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEE-EEC-------
T ss_pred CceEEcCcCCC-CeEEEEcC----CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCC-CCC-------
Confidence 999999 66 69999999 7999999999999999999999999 999999999999986531 001
Q ss_pred CCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCCh-HHHHhHHHHHHHHHHHHHHHHcCC
Q 017214 212 GPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERITEQAGV 290 (375)
Q Consensus 212 ~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~K~~vk~VA~~~Gl 290 (375)
...||...+.+. ..+++++|+++|+ +||+|+++|||+|||||||++.|++ ++++||+++++|++||+||++||+
T Consensus 139 --~p~y~~~~~~~~--~~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~ 213 (421)
T 2j9i_A 139 --KTISFPASTTAA--AADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNA 213 (421)
T ss_dssp --SSCEEEECCCTT--CTTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTC
T ss_pred --CCCcCCCCcccc--hhHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 113555444443 3566688888999 9999999999999999999999999 999999999999999999999999
Q ss_pred eEeecccCcCCCCCCceeeeeeecccccccCC------------HHHHHHHHHHHhHhhHHHhhccc---cccccCCCCC
Q 017214 291 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGG------------YETIKKAILNLSLRHKEHISAYG---EGNERRLTGK 355 (375)
Q Consensus 291 ~ATFmpKP~~~~~~GsG~HvH~SL~~~~~~~g------------~n~~~~~iaGl~L~h~~al~a~~---~NSYkRl~~~ 355 (375)
.||||||| + ++|||| +|+|||++++ +| +..+++||||| |+|+++++|++ +||||| +
T Consensus 214 ~atFmpKP--~-~~GSG~-~h~Sl~~~~~-~G~nlf~~~~~~~ls~~~~~~iaGi-l~h~~~l~a~~~p~~NSYk~---~ 284 (421)
T 2j9i_A 214 IASAAAAA--A-AAAAGA-GSHSIWDVGA-AGTNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAAAA---A 284 (421)
T ss_dssp EEECCTTS--S-TTSCCC-BCCEEECEEE-TTEESSCSSSGGGCCHHHHHHHHHH-HHHHHHHHHHHTCSHHHHHH---T
T ss_pred EEEEcCCc--C-CCCCce-EEEeccccCC-CCceeecCCCCccccHHHHHHHHHH-HHHHHHHHHHhCCCccccCC---C
Confidence 99999999 6 699999 9999997421 12 34568999999 99999999997 499995 5
Q ss_pred CCCCCCCce---eeecCCCCCCC
Q 017214 356 HETASIDSF---SWVCSEDGPIF 375 (375)
Q Consensus 356 ~~ap~~~~~---~WG~~NRsaa~ 375 (375)
.|||. ++ +||.+||+++|
T Consensus 285 ~~ap~--~~~~~~wG~~NRsa~i 305 (421)
T 2j9i_A 285 AAGAA--AAAATAWGAAAAACAL 305 (421)
T ss_dssp SSSTT--CCCEEEEESSCTTEEE
T ss_pred CCCCc--CeeeeeeecCCCccce
Confidence 67777 66 99999999874
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=5.6e-51 Score=426.52 Aligned_cols=235 Identities=19% Similarity=0.212 Sum_probs=174.4
Q ss_pred cCCCC---CCCCCCCccEEEEeEe---ceecCCCCCCeEEEEEEeecCCCc------cCCCCHHHHHHHHHHhhhcCCC-
Q 017214 116 DGSST---GQAPGEDSEVILYPQA---IFKDPFRGGNNILVICDTYTPAGE------PIPTNKRHRAAEIFSNSKVSAE- 182 (375)
Q Consensus 116 Dgss~---g~~~~~~~D~~l~PD~---l~~~Pw~~~~~a~Vlcd~~~~dG~------P~~~~PR~vL~~~l~~l~~~G~- 182 (375)
||||+ |+....++|+++.||+ .+++| +|..+.|.+++.+|+ |+..|||++|+++++.++..|.
T Consensus 129 DgSS~p~gG~r~t~earg~~~~D~ts~afi~~----~TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~d 204 (729)
T 3o6x_A 129 DASSFPNGGIRNTFEARGYTAWDGSSPAFVVD----TTLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDKN 204 (729)
T ss_dssp -------------------CCBCSSSCCEEET----TEEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred ccccCCCccchhhhhccCceecCCCCCeEEeC----CeEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCCC
Confidence 89988 7777889999999997 67776 499999999997775 5788999999999999999997
Q ss_pred ----cceEeeeeeEEEeccCC--CCCC----CCCCCCCCCCCC-----CCccCCccChhHHHHHHHHHHHHHHHcCceee
Q 017214 183 ----VPWFGIEQEYTLLQQNV--KWPL----GWPVGAYPGPQG-----PYYCGAGADKSFGRDIADAHYKACLYAGINIS 247 (375)
Q Consensus 183 ----~~~vg~E~EF~L~~~~~--~~~~----g~~~~~~~~~~~-----~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve 247 (375)
++++|+|+|||||++.. ..+. |+..-+....++ +||...+ +. ..+++++|.++|+++||+|+
T Consensus 205 ~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~ve 281 (729)
T 3o6x_A 205 ITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIPVK 281 (729)
T ss_dssp CCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CC-HH--HHHHHHHHHHHHHHHTCCEE
T ss_pred CccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCCeE
Confidence 69999999999999642 1111 111111222333 7777666 43 57888888888999999999
Q ss_pred eecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeecccccc------cC
Q 017214 248 GTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE------EG 321 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL~~~~~------~~ 321 (375)
+.|+|+|||||||++.|+++++|||+++++|++||+||++||+.|||||||+.+ .+|||||+|+|||+..+ .+
T Consensus 282 ~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g-~nGSG~HvH~SL~~~~G~NLF~~~d 360 (729)
T 3o6x_A 282 TRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNG-VNGSGKHNNWSLCTDTGINLFAPGK 360 (729)
T ss_dssp EECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTT-SCCCBEEEEEEEEETTCCCSSCCCS
T ss_pred EeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-CCCCcceeeccccCCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 59999999999997411 11
Q ss_pred C-------HHHHHHHHHHHhHhhHHHhhcccc---ccccCCCCCCCCCCCCc
Q 017214 322 G-------YETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDS 363 (375)
Q Consensus 322 g-------~n~~~~~iaGl~L~h~~al~a~~~---NSYkRl~~~~~ap~~~~ 363 (375)
+ ...+++||+|| |+|+++|+|+++ ||| || |++|||+ +
T Consensus 361 ~~~~~~~~s~~~~~fIaGV-LkHa~aL~A~~aPt~NSY-RL-~g~EAP~--~ 407 (729)
T 3o6x_A 361 NPKGNMLFLTFLVNVLMMV-HKNQDLLRASIMSAGNSH-RL-GANEAPP--A 407 (729)
T ss_dssp STTTCHHHHHHHHHHHHHH-HHTHHHHHHHSCCHHHHT-TS-SSSSCCC--S
T ss_pred CccchhhHHHHHHHHHHHH-HHhHHHHHHHhCCCcccc-cc-CCCcCCc--h
Confidence 1 12356899999 999999999984 999 99 9999999 7
No 11
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=98.11 E-value=2.2e-05 Score=79.48 Aligned_cols=152 Identities=17% Similarity=0.111 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCc
Q 017214 165 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGI 244 (375)
Q Consensus 165 ~PR~vL~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI 244 (375)
-.+..|.+.++.--..+-...+|+|+||++++.++. .+ .+| .. ..++++.+.+ ..|.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~---------~~---~~~------~~--~~~lL~~l~~---~~g~ 72 (449)
T 2gwd_A 16 LTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL---------RP---MKY------DQ--IAELLNSIAE---RFEW 72 (449)
T ss_dssp CCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC---------CB---CCH------HH--HHHHHHHHHH---HHTC
T ss_pred cCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC---------CC---CCh------HH--HHHHHHHHHH---hhcc
Confidence 344455555554222345689999999999997531 11 111 01 3566665533 2332
Q ss_pred e-------e-------eeecCCCCCCcEEEEcCCCh-HHHHhHHHHHHHHHHHHHHHHcCCeE---ee-----------c
Q 017214 245 N-------I-------SGTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERITEQAGVVL---SL-----------D 295 (375)
Q Consensus 245 ~-------v-------e~~h~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~K~~vk~VA~~~Gl~A---TF-----------m 295 (375)
. + ..+..|.+ +|+|++..|+. .-++.+++...+..++++|+++|+.. .+ +
T Consensus 73 ~~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~ 151 (449)
T 2gwd_A 73 EKVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTM 151 (449)
T ss_dssp EEEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCC
T ss_pred CccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCC
Confidence 1 1 12667776 99999999985 56799999999999999999999764 12 2
Q ss_pred ccCc----------CCCCC-------CceeeeeeecccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 296 PKPI----------EGDWN-------GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 296 pKP~----------~~~~~-------GsG~HvH~SL~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
|||- .+ +. -+|+|+|+++.+ .. .+-..+..+ +...|.++|++.||
T Consensus 152 ~~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~-----~~-~~~~~~~~~-~~~~P~llALsAnS 213 (449)
T 2gwd_A 152 PKGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSS-----EA-DMIRKFRAG-LALQPIATALFANS 213 (449)
T ss_dssp SCHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSS-----HH-HHHHHHHHH-HHHHHHHHHHHCCB
T ss_pred CchHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCC-----HH-HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 3321 12 22 588999999975 12 233445556 88889999998665
No 12
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=97.81 E-value=0.00016 Score=71.24 Aligned_cols=130 Identities=13% Similarity=0.048 Sum_probs=86.9
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCcee--eeecCCCCCCcEEE
Q 017214 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINI--SGTNGEVMPGQWEY 260 (375)
Q Consensus 183 ~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~v--e~~h~E~gpGQ~Ei 260 (375)
...+|+|.||++++.++. .+. ++ . .++++. .+=.+ ..+..|..-+|.|+
T Consensus 11 ~~~~GiE~E~~~Vd~~~g---------~~~---~~------~----~~~l~~-------~~~~~~~~~it~E~~~~qlEl 61 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPGY---------DLS---QD------S----SMLIDA-------VKNKITAGEVKHDITESMLEL 61 (372)
T ss_dssp TTCEEEEEEEEEEETTTT---------EEC---SC------C----HHHHTT-------TSSSCSSSEEEECSSSSEEEE
T ss_pred CCceEEEEEEeeECCCCC---------CcC---cc------H----HHHHHh-------chhcccCCcccchhhccEEEe
Confidence 469999999999997632 111 11 0 233322 11111 46888999999999
Q ss_pred EcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeE---eec-----------ccCc----CC-------CCCCceeeeeeec
Q 017214 261 QVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL---SLD-----------PKPI----EG-------DWNGAGCHTNYST 314 (375)
Q Consensus 261 ~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~A---TFm-----------pKP~----~~-------~~~GsG~HvH~SL 314 (375)
+..|+ +.-++.+.+-..+..++++|.++|... .+. |||. .+ ...-+|+|+|+++
T Consensus 62 ~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~~~~i~g~hvhv~~ 141 (372)
T 1r8g_A 62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGC 141 (372)
T ss_dssp ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeEEEEeCC
Confidence 99998 566799999999999999999988764 232 3332 01 0133999999999
Q ss_pred ccccccCCHHHHHHHHHHHhHhhHHHhhcccccc
Q 017214 315 KSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (375)
Q Consensus 315 ~~~~~~~g~n~~~~~iaGl~L~h~~al~a~~~NS 348 (375)
-+ ..+ +-..+..+ +.+.|.++|++.||
T Consensus 142 ~~-----~~~-~~~~~~~~-~~~~p~l~aL~anS 168 (372)
T 1r8g_A 142 AS-----GDD-AIYLLHGL-SRFVPHFIALSAAS 168 (372)
T ss_dssp SS-----HHH-HHHHHHHH-HTTHHHHHHHHCCB
T ss_pred CC-----HHH-HHHHHHHH-HHHHHHHHHHHhCC
Confidence 75 222 23445566 88899999998665
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=93.89 E-value=0.24 Score=53.14 Aligned_cols=124 Identities=11% Similarity=-0.039 Sum_probs=70.2
Q ss_pred eecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHH-HHcCCeEeeccc-------CcCC-----------------
Q 017214 248 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERIT-EQAGVVLSLDPK-------PIEG----------------- 301 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA-~~~Gl~ATFmpK-------P~~~----------------- 301 (375)
.+.+|+.-.|.|+...++ +.-++-+.+-..+..+.+.+ ....+-+.=||= |+..
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry 133 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY 133 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh
Confidence 466778888888888887 45667777777777776664 333332222221 2221
Q ss_pred ---CCCCceeeeeeeccccc--------ccCCHHHHH-----HHHHHHhHhhHHHhhcccccc--c-cCCCCCCC---CC
Q 017214 302 ---DWNGAGCHTNYSTKSMR--------EEGGYETIK-----KAILNLSLRHKEHISAYGEGN--E-RRLTGKHE---TA 359 (375)
Q Consensus 302 ---~~~GsG~HvH~SL~~~~--------~~~g~n~~~-----~~iaGl~L~h~~al~a~~~NS--Y-kRl~~~~~---ap 359 (375)
.+.=+|+|+|+|+-+.. +......|. ..+-++ +.+.+.|++++.+| + +++..+.. +-
T Consensus 134 g~~~q~i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~-~r~~w~l~~L~gaSP~~~~~f~~g~~~~~~~ 212 (750)
T 3ln6_A 134 GKLIQSISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNF-LRYRWLLTYLYGASPVAEEDFLDQKLNNPVR 212 (750)
T ss_dssp CTGGGGCCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHTCCBCCCSSSCSSCTTTCCCS
T ss_pred ChhhceeeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHH-HhHHHHHHHHhhCCccccccccCCCCCCcee
Confidence 01237999999997631 000111122 347778 99999999997433 1 12222211 11
Q ss_pred CCCceeeecCCCC
Q 017214 360 SIDSFSWVCSEDG 372 (375)
Q Consensus 360 ~~~~~~WG~~NRs 372 (375)
+...-.||+-|++
T Consensus 213 S~R~s~~g~~~~~ 225 (750)
T 3ln6_A 213 SLRNSHLGYVNHK 225 (750)
T ss_dssp BSTTSSSSSCCCT
T ss_pred eeeccccCCCCCC
Confidence 2235567888873
No 14
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=91.53 E-value=0.79 Score=49.16 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=67.9
Q ss_pred eecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHH-HHcCCeEeecc----c----CcCC----------------
Q 017214 248 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERIT-EQAGVVLSLDP----K----PIEG---------------- 301 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA-~~~Gl~ATFmp----K----P~~~---------------- 301 (375)
.+.+|+.-.|.|+...++ +.-++-+.+-..+..+.+.+ ....+-+.=|| . |+..
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lwp~smp~~l~~~~~ip~a~~~~~~~~~Yr~~L~~r 132 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVAQLDNPEDVAYREYLVKI 132 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCTTEECCCSSSCSBCCC---CCCCCCSSHHHHHHHHHHHHH
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCCCCCCCccccCCCccHHHHHHHHHH
Confidence 456677777888877776 45566777777777666664 33333222221 1 2321
Q ss_pred ----CCCCceeeeeeeccccc--------cc-CCHHHHH-----HHHHHHhHhhHHHhhcccc------ccccC----CC
Q 017214 302 ----DWNGAGCHTNYSTKSMR--------EE-GGYETIK-----KAILNLSLRHKEHISAYGE------GNERR----LT 353 (375)
Q Consensus 302 ----~~~GsG~HvH~SL~~~~--------~~-~g~n~~~-----~~iaGl~L~h~~al~a~~~------NSYkR----l~ 353 (375)
.+.=+|+|+|+|+-+.- .+ .....|. ..+-++ +++.+.|++++. .||-. +.
T Consensus 133 yG~~~q~i~GiH~n~s~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~-~r~~wll~yL~gaSP~~~~~f~~g~~~~~ 211 (757)
T 3ln7_A 133 YGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNF-LRYQWILLYLLAATPTVESAYFKDGSPLA 211 (757)
T ss_dssp HCSHHHHCCCCEEEEEECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH-HHHHHHHHHHTCCBCC----CTTTCSSCC
T ss_pred hchhhceeeeEEEEEecChHHHHHHhhhcccchhHHHHHhHHHHHHHHhh-HhHHHHHHHHhhCCcccccccccCCCCCC
Confidence 00137999999997620 00 1111122 347778 889999999973 33311 11
Q ss_pred CCCCCCCCCceeeecCCCC
Q 017214 354 GKHETASIDSFSWVCSEDG 372 (375)
Q Consensus 354 ~~~~ap~~~~~~WG~~NRs 372 (375)
...++-+...-.||+-|++
T Consensus 212 ~~~~~~S~R~s~~gy~~~~ 230 (757)
T 3ln7_A 212 KGQFVRSLRSSQYGYVNDP 230 (757)
T ss_dssp SSCCCSBSTTSSSSCCCCS
T ss_pred CCCCcccccccccCCCCCC
Confidence 1122223335668888874
No 15
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=84.76 E-value=2.3 Score=43.56 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=55.6
Q ss_pred eecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHHHHcCCeE--eecc----c----CcCCCC-------------
Q 017214 248 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL--SLDP----K----PIEGDW------------- 303 (375)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA~~~Gl~A--TFmp----K----P~~~~~------------- 303 (375)
.+.+|..-.|.|+...++ +.-++-+.+-..+..+.+.+. |... .=|| . |+.. |
T Consensus 56 ~IttDfsEsqlE~iTpv~~s~~eal~~L~~l~~~v~~~l~--~e~Lwp~SmP~~l~~~~~IpiA~-yg~s~~g~~k~~Yr 132 (518)
T 1va6_A 56 WITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMG--DERMWPLSMPSYIAEGQDIELAQ-YGTSNTGRFKTLYR 132 (518)
T ss_dssp SEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSST--TCEECCSSSCSSCCTTCCCCBCC-CCSSHHHHHHHHHH
T ss_pred CcCCCcchhheeecCCCCCCHHHHHHHHHHHHHHHHHHcC--CCeEeecCCCCCCCCCCCCcccc-ccccccCccchHHH
Confidence 356677778888888876 455577777777776666662 3221 1111 1 2322 1
Q ss_pred ------------CCceeeeeeecccc-----cc-cCCH--HHH-----HHHHHHHhHhhHHHhhccc
Q 017214 304 ------------NGAGCHTNYSTKSM-----RE-EGGY--ETI-----KKAILNLSLRHKEHISAYG 345 (375)
Q Consensus 304 ------------~GsG~HvH~SL~~~-----~~-~~g~--n~~-----~~~iaGl~L~h~~al~a~~ 345 (375)
.=+|+|+|+|+-+. .+ ..+. ..| -..+-++ +.+.+.|++++
T Consensus 133 ~~L~~rYG~~~q~IsGiH~N~s~~d~l~~~l~~~~~~~~~~~~~~~~y~~lirn~-~r~~wlL~yLf 198 (518)
T 1va6_A 133 EGLKNRYGALMQTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNY-YRFGWVIPYLF 198 (518)
T ss_dssp HHHHHHHCHHHHTCCEEEEEEECCHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHH
T ss_pred HHHHHHhCcchheeeeEEEEEecCHHHHHHHHhhccchhHHHHhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 23799999999762 00 0111 011 1346678 88999999886
No 16
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=79.02 E-value=5.6 Score=33.13 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=59.0
Q ss_pred HHHHHhhhcCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccCCccChhHHHHHHHHHHHHHHHcCceeeeec
Q 017214 171 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTN 250 (375)
Q Consensus 171 ~~~l~~l~~~G~~~~vg~E~EF~L~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~~~~~~~i~~~l~~al~~~GI~ve~~h 250 (375)
+++++.|++.|..+..-.++||++.=++.. . ...+.. .+...|..|+..-
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de~------------------------~--~e~~a~----~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDFD------------------------K--LEKAAV----EAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCHH------------------------H--HHHHHH----HHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCHH------------------------H--HHHHHH----HHHHCCCEEEecc
Confidence 577888888899999999999998754311 1 233333 3467888886322
Q ss_pred C---CCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCe
Q 017214 251 G---EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (375)
Q Consensus 251 ~---E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ 291 (375)
. |-+-..|++.+.....+...+=.-....+. .+|+++|-.
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~-~lA~~~~G~ 114 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLV-NLAEKFDII 114 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHH-HHHHHHTCE
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHH-HHHHHhCcE
Confidence 2 333347999998877776555444444554 488887753
No 17
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=77.90 E-value=6.1 Score=40.44 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=52.0
Q ss_pred ecCCCCCCcEEEEcCCC-hHHHHhHHHHHHHHHHHHHH-HHcCCeEeeccc-------CcCC------------------
Q 017214 249 TNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERIT-EQAGVVLSLDPK-------PIEG------------------ 301 (375)
Q Consensus 249 ~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~K~~vk~VA-~~~Gl~ATFmpK-------P~~~------------------ 301 (375)
+.+|+.-.|.|+...++ +.-++-+.+-..+.++.+.+ ....+-+.=||= |+..
T Consensus 68 IttDfsEsqlE~iTp~~~s~~ea~~~L~~l~~~v~~~l~~~E~LWp~SmPl~~~~~~ipiA~yg~sn~g~~k~~YR~gL~ 147 (525)
T 3nzt_A 68 ITVDFSENLLELITKPHDSIDKAIGELYQLSAFTLDNMHSDEIILNTSMPLSANDNDIQEADFGSSNSGRMKRVYRKGLS 147 (525)
T ss_dssp EEESSBTTEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCCSCCGGGCCBCCCCSSHHHHHHHHHHHHHH
T ss_pred CCchhhhhHhhhcCCCCCCHHHHHHHHHHHHHHHHHhhCCCCeEEeecCCCCCCcCCCceeeccccccCcchHHHHHHHH
Confidence 44455566666666665 34555566666666555554 444444444541 1110
Q ss_pred ------CCCCceeeeeeeccccc-------ccCCHHHH-HHHHHHHhHhhHHHhhccc
Q 017214 302 ------DWNGAGCHTNYSTKSMR-------EEGGYETI-KKAILNLSLRHKEHISAYG 345 (375)
Q Consensus 302 ------~~~GsG~HvH~SL~~~~-------~~~g~n~~-~~~iaGl~L~h~~al~a~~ 345 (375)
.+.=+|+|+|+|+-+.- .....|.. -..+-++ +++..-|+.|+
T Consensus 148 ~rYG~~~q~IsGiH~Nfsl~~~~~~~l~~~~~~~~s~~Y~~Lirnf-~Ry~Wll~YLf 204 (525)
T 3nzt_A 148 ARYGKIMQIISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNY-FEFMWLLPYLF 204 (525)
T ss_dssp HHHCSGGGGCCBEEEEEECCHHHHHHHHHHHTCCHHHHHHHHHHHH-HHHTTHHHHHH
T ss_pred HHhchhheeeeeEEEEecCCHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHHHHHh
Confidence 01236999999997620 00012222 2456677 88888888885
No 18
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=63.24 E-value=5.1 Score=30.05 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 231 IADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 231 i~~~l~~al~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
++.++...+.+.|++|..++.....|.+.+.+.-.-. ..+++-.++.-++.++.++|+.+.+.+.
T Consensus 18 ila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 18 IVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred HHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 3445555567899999998877666777766653211 1223446667789999999999988654
No 19
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=44.10 E-value=1.4e+02 Score=28.17 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHcC-ceeeeecCCCC----CCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCceeeeeeec
Q 017214 240 LYAG-INISGTNGEVM----PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYST 314 (375)
Q Consensus 240 ~~~G-I~ve~~h~E~g----pGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG~HvH~SL 314 (375)
.++| |++..+..-.+ |.+.=|.|.|.+++.-+|-+-.+ ..+|++-.+.||. +| ||= . -|.|+|+-+-|
T Consensus 112 aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA-~~~r~~L~~lGL~-~f-~KT--S--GgkGlHV~vPl 184 (309)
T 2fao_A 112 VQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEAT-QLSLTLLDELGLR-AF-LKT--S--GGKGMHLLVPL 184 (309)
T ss_dssp HHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHHHHH-HHHHHHHHHHTCC-CE-EEE--C--SSSSEEEEEEC
T ss_pred HHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHHHHH-HHHHHHHHHcCCc-ee-eEc--c--CCCeeEEEEEc
Confidence 3555 77777766554 88999999999776655544344 3488999999996 45 662 1 36899999999
Q ss_pred cc
Q 017214 315 KS 316 (375)
Q Consensus 315 ~~ 316 (375)
..
T Consensus 185 ~~ 186 (309)
T 2fao_A 185 ER 186 (309)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 20
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=38.26 E-value=41 Score=27.23 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHcCceeeeecC-------CC----CCCcEEEEcCCChH-----H---HHhHHHHHHHHHHHHHHHHc
Q 017214 228 GRDIADAHYKACLYAGINISGTNG-------EV----MPGQWEYQVGPSVG-----I---DAGDHIWCSRYLLERITEQA 288 (375)
Q Consensus 228 ~~~i~~~l~~al~~~GI~ve~~h~-------E~----gpGQ~Ei~l~~~~~-----l---~aaD~~~~~K~~vk~VA~~~ 288 (375)
-.+|+.+|.++|.+.||..+.-.. +. +.-|||+.+--... + +..=+.+.||.++..|..+.
T Consensus 39 P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L 118 (120)
T 3ose_A 39 PNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 478999999999999998887431 11 23478888744321 1 12225678999999998876
Q ss_pred CC
Q 017214 289 GV 290 (375)
Q Consensus 289 Gl 290 (375)
.|
T Consensus 119 ~L 120 (120)
T 3ose_A 119 KL 120 (120)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 21
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=37.71 E-value=81 Score=25.88 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHcCceeeee--------cCCC---CCCcEEEEcCCChHH--------HHhHHHHHHHHHHHHHHHHc
Q 017214 228 GRDIADAHYKACLYAGINISGT--------NGEV---MPGQWEYQVGPSVGI--------DAGDHIWCSRYLLERITEQA 288 (375)
Q Consensus 228 ~~~i~~~l~~al~~~GI~ve~~--------h~E~---gpGQ~Ei~l~~~~~l--------~aaD~~~~~K~~vk~VA~~~ 288 (375)
-.+|+.+|+++|.+.||+.+.. |... ..=||||.+--...+ +..-+.|.||.++.+|..+.
T Consensus 39 P~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eL 118 (126)
T 1v5s_A 39 SGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (126)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHH
Confidence 3789999999999999988851 2111 123899997633211 12235689999999999988
Q ss_pred CC
Q 017214 289 GV 290 (375)
Q Consensus 289 Gl 290 (375)
.+
T Consensus 119 kL 120 (126)
T 1v5s_A 119 KL 120 (126)
T ss_dssp TC
T ss_pred hc
Confidence 75
No 22
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=33.17 E-value=1e+02 Score=29.07 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=67.0
Q ss_pred HcC-ceeeeecCCC-C-----------CCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCCCCCCce
Q 017214 241 YAG-INISGTNGEV-M-----------PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAG 307 (375)
Q Consensus 241 ~~G-I~ve~~h~E~-g-----------pGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~~~~GsG 307 (375)
++| |++..+..-. + |.+.=|.|-|.+++.-+|-+ .+=..+|++-.+.||.+ | ||= . -|.|
T Consensus 107 q~g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v~-~aA~~~r~~L~~lGL~~-f-~KT-S---GgkG 179 (303)
T 2iru_A 107 QQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLA-EVARAVRDLLADIGLVT-F-PVT-S---GSKG 179 (303)
T ss_dssp HTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHHH-HHHHHHHHHHHTTTCCC-E-EEE-C---SSSC
T ss_pred HhCcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHHH-HHHHHHHHHHHHcCCcc-c-eEc-c---CCCe
Confidence 454 7777665444 3 67888999998765544433 33345889999999874 5 672 1 3689
Q ss_pred eeeeeecccccccCCHH---HHHHHHHHHhHh-hHHHhhccccccccCCCCCCCCCCCCceeeecCCCCC
Q 017214 308 CHTNYSTKSMREEGGYE---TIKKAILNLSLR-HKEHISAYGEGNERRLTGKHETASIDSFSWVCSEDGP 373 (375)
Q Consensus 308 ~HvH~SL~~~~~~~g~n---~~~~~iaGl~L~-h~~al~a~~~NSYkRl~~~~~ap~~~~~~WG~~NRsa 373 (375)
+|+-+-|... -+.. .|-+++|-. ++ ..|.+ ++.+..|....| .| ++.|-.|+|..
T Consensus 180 lHV~vPl~~~---~~~~~vr~fa~~~A~~-l~~~~Pd~--~t~~~~k~~R~g----kI-fvDy~qN~~g~ 238 (303)
T 2iru_A 180 LHLYTPLDEP---VSSRGATVLAKRVAQR-LEQAMPAL--VTSTMTKSLRAG----KV-FVDWSQNSGSK 238 (303)
T ss_dssp EEEEEEEEEE---ECHHHHHHHHHHHHHH-HHHHCTTT--EESSCCGGGCTT----SE-EEECGGGSTTC
T ss_pred EEEEEEcCCC---CCHHHHHHHHHHHHHH-HHHHCcce--ehhhhhHHhCCC----CE-EEECccCCCCC
Confidence 9999999652 2333 344445443 22 22443 333333433332 12 66666666653
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=27.77 E-value=57 Score=28.19 Aligned_cols=66 Identities=18% Similarity=0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCC------CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 229 RDIADAHYKACLYAGINISGTNGEV------MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 229 ~~i~~~l~~al~~~GI~ve~~h~E~------gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
--++.++.+.|.+.|+.|..++.-. ..+.|-+.+.-.-+ ...| -.+|..+..+|+++|+...|.|-
T Consensus 104 pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~--~~l~~~l~~~a~~l~~di~~~~~ 175 (195)
T 2nyi_A 104 EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY--QEVVTALSRVEEEFGVDIDLEEV 175 (195)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH--HHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc--HHHHHHHHHHHHHcCeEEEEEEC
Confidence 3566777777889999998776543 34677666554322 1223 56788889999999999999864
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=25.10 E-value=61 Score=27.68 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCceeeeecCCC--------CCCcEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeeccc
Q 017214 230 DIADAHYKACLYAGINISGTNGEV--------MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (375)
Q Consensus 230 ~i~~~l~~al~~~GI~ve~~h~E~--------gpGQ~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpK 297 (375)
.++.++.+.|.+.|+.|+.+..-. +.+.|-+.+.-..+ ... +.-.+|..+..+|.++|+...|.+-
T Consensus 105 Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~~~~~~ 178 (192)
T 1u8s_A 105 GLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGC-NLMQLQEEFDALCTALDVQGSLNFI 178 (192)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTS-CHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCC-CHHHHHHHHHHHHHHhCceEEEEEc
Confidence 456666677789999998766543 35566655543211 111 3446788888999999999999874
No 25
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=23.17 E-value=1.1e+02 Score=29.11 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=42.1
Q ss_pred HHHHHHHHcCceeeeecCCCCCC--cEEEEcCCChHHHHhHHHHHHHHHHHHHHHHcCCeEeecccCcCC
Q 017214 234 AHYKACLYAGINISGTNGEVMPG--QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG 301 (375)
Q Consensus 234 ~l~~al~~~GI~ve~~h~E~gpG--Q~Ei~l~~~~~l~aaD~~~~~K~~vk~VA~~~Gl~ATFmpKP~~~ 301 (375)
.+.+.+++.||.+--+.++.-|- ..|+.+...+ .+++. + .-|.++|+++|+..||.|=+|.-
T Consensus 64 ~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~~~--~~~~~---l-~~iG~~a~~~~iRLS~HPgqF~v 127 (310)
T 3tc3_A 64 NILEWNLKHEILFFRISSNTIPLASHPKFHVNWKD--KLSHI---L-GDIGDFIKENSIRISMHPGQYVV 127 (310)
T ss_dssp HHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCHHH--HTHHH---H-HHHHHHHHHTTCEEEECCCTTCC
T ss_pred HHHHHHHHcCCEEEEeCcccCCCccccccccchHH--HHHHH---H-HHHHHHHHHcCcEEEecCCCCcc
Confidence 35567889999999999888772 2233222111 12222 2 34688899999999999999864
Done!