RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017214
         (375 letters)



>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 30/151 (19%), Positives = 46/151 (30%), Gaps = 25/151 (16%)

Query: 181 AEVPWFGIEQEYTLLQQNV----------------------KWPLGWPVGAYPGPQGPYY 218
           A+   FG E E+ L                               G   G  PG +G Y+
Sbjct: 21  ADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80

Query: 219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCS 277
                D    +DI           G+ +   + EV   GQ E     +      D I   
Sbjct: 81  PVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIY 138

Query: 278 RYLLERITEQAGVVLSLDPKPIEGDWNGAGC 308
           +Y++  +  + G   +  PKP+ GD      
Sbjct: 139 KYVVHNVAHRFGKTATFMPKPMFGDNGSGMH 169


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 91  IDMRSKSKTISKPVEHPSE----LPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRG 144
            D + K + ++ P    +       K     S  G     +S+++L P A     DPF  
Sbjct: 22  TDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFA 81

Query: 145 GNNILVICDTYTPA-GEP 161
            + +++ CD   P   + 
Sbjct: 82  DSTLIIRCDILEPGTLQG 99


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 33.0 bits (75), Expect = 0.010
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 82  EYIWIGGTGIDMRSKSKTISKPV--EHPSELPKWNYDGSSTGQAPGEDSEVILYPQA--I 137
           EY+ +    +    +  TI      +   +        S  G     +S+++L P     
Sbjct: 15  EYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETA 74

Query: 138 FKDPFRGGNNILVICDTYTPA-GEP 161
             DPFR    + +    + P   EP
Sbjct: 75  RIDPFRAAKTLNINFFVHDPFTLEP 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0373    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,455,308
Number of extensions: 68758
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.5 bits)