Query 017217
Match_columns 375
No_of_seqs 347 out of 1755
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 1.5E-58 3.2E-63 471.6 19.5 320 10-375 192-522 (634)
2 KOG0782 Predicted diacylglycer 100.0 9E-51 1.9E-55 402.7 11.0 294 29-374 301-608 (1004)
3 PRK12361 hypothetical protein; 100.0 1.7E-32 3.6E-37 286.4 16.9 216 16-295 167-394 (547)
4 PRK11914 diacylglycerol kinase 100.0 1.2E-30 2.5E-35 253.9 22.0 235 78-373 6-286 (306)
5 COG1597 LCB5 Sphingosine kinas 100.0 1.3E-30 2.7E-35 253.1 19.5 230 80-373 2-278 (301)
6 PRK13059 putative lipid kinase 100.0 4.4E-30 9.6E-35 248.8 19.5 229 80-373 1-275 (295)
7 PRK13055 putative lipid kinase 100.0 5.5E-30 1.2E-34 252.2 19.3 232 80-373 2-283 (334)
8 PRK13057 putative lipid kinase 100.0 8.2E-30 1.8E-34 245.9 19.9 220 84-372 1-266 (287)
9 PRK13337 putative lipid kinase 100.0 6.6E-30 1.4E-34 248.5 19.2 230 80-373 1-276 (304)
10 PLN02958 diacylglycerol kinase 100.0 5.6E-30 1.2E-34 262.8 19.6 163 78-295 109-276 (481)
11 PRK00861 putative lipid kinase 100.0 1.4E-29 2.9E-34 245.7 20.3 147 80-293 2-148 (300)
12 TIGR03702 lip_kinase_YegS lipi 100.0 3E-29 6.5E-34 242.7 17.5 228 82-373 1-270 (293)
13 PRK13054 lipid kinase; Reviewe 100.0 5.8E-29 1.3E-33 241.4 18.4 231 79-373 2-276 (300)
14 KOG1170 Diacylglycerol kinase 100.0 1.7E-31 3.8E-36 273.9 0.3 187 10-231 134-324 (1099)
15 TIGR00147 lipid kinase, YegS/R 100.0 4.7E-28 1E-32 233.9 19.6 229 80-373 1-277 (293)
16 PLN02204 diacylglycerol kinase 99.9 1E-25 2.2E-30 232.2 20.4 181 74-297 153-400 (601)
17 KOG1116 Sphingosine kinase, in 99.9 1.7E-23 3.7E-28 212.2 10.7 177 74-302 173-351 (579)
18 PF00781 DAGK_cat: Diacylglyce 99.9 8.4E-23 1.8E-27 174.6 12.9 125 82-230 1-127 (130)
19 smart00046 DAGKc Diacylglycero 99.9 8.7E-22 1.9E-26 167.4 11.8 101 84-201 1-101 (124)
20 PF00609 DAGK_acc: Diacylglyce 99.7 2.4E-19 5.3E-24 159.1 2.0 88 274-374 1-88 (161)
21 KOG1115 Ceramide kinase [Lipid 99.6 1.9E-15 4E-20 147.3 9.4 178 74-302 152-341 (516)
22 KOG4435 Predicted lipid kinase 99.2 8.5E-11 1.8E-15 114.9 11.4 138 74-228 54-196 (535)
23 smart00045 DAGKa Diacylglycero 98.6 4.1E-08 8.9E-13 86.9 4.9 88 274-374 1-88 (160)
24 PRK03708 ppnK inorganic polyph 98.5 1.2E-06 2.7E-11 84.4 11.3 122 81-231 1-123 (277)
25 PRK02645 ppnK inorganic polyph 98.4 3.2E-06 7E-11 82.6 11.6 125 79-233 2-128 (305)
26 PRK03378 ppnK inorganic polyph 97.8 0.0003 6.5E-09 68.4 12.1 123 80-232 5-131 (292)
27 PRK01231 ppnK inorganic polyph 97.6 0.001 2.2E-08 64.8 12.7 127 80-232 4-130 (295)
28 COG3199 Predicted inorganic po 97.6 0.00049 1.1E-08 67.3 10.1 58 147-220 100-157 (355)
29 PF01513 NAD_kinase: ATP-NAD k 97.3 0.0011 2.3E-08 64.3 9.1 71 145-232 74-144 (285)
30 PRK14077 pnk inorganic polypho 97.1 0.0097 2.1E-07 57.8 13.3 125 78-232 8-132 (287)
31 PRK02155 ppnK NAD(+)/NADH kina 97.1 0.0081 1.8E-07 58.4 12.4 127 80-232 5-131 (291)
32 PRK03372 ppnK inorganic polyph 96.9 0.015 3.2E-07 57.0 12.5 126 78-232 3-140 (306)
33 PRK04539 ppnK inorganic polyph 96.8 0.016 3.4E-07 56.6 12.0 127 79-232 4-136 (296)
34 PRK03501 ppnK inorganic polyph 96.7 0.02 4.4E-07 54.9 11.9 107 80-232 2-109 (264)
35 PRK02649 ppnK inorganic polyph 96.7 0.031 6.8E-07 54.7 13.4 130 80-232 1-136 (305)
36 PRK01911 ppnK inorganic polyph 96.7 0.032 6.9E-07 54.3 13.1 123 81-232 1-132 (292)
37 PLN02935 Bifunctional NADH kin 96.3 0.081 1.7E-06 54.9 13.5 68 147-231 262-329 (508)
38 PRK04885 ppnK inorganic polyph 95.9 0.1 2.2E-06 50.1 11.9 102 82-230 2-103 (265)
39 PRK00561 ppnK inorganic polyph 95.7 0.18 3.9E-06 48.3 12.5 66 147-229 33-99 (259)
40 PRK14075 pnk inorganic polypho 95.5 0.33 7.2E-06 46.3 13.2 68 146-233 40-107 (256)
41 PRK14076 pnk inorganic polypho 95.4 0.15 3.3E-06 54.2 11.8 126 77-231 287-415 (569)
42 PRK01185 ppnK inorganic polyph 94.7 0.52 1.1E-05 45.4 12.2 116 82-232 2-117 (271)
43 PLN02727 NAD kinase 94.4 0.28 6.1E-06 54.2 10.7 116 78-222 676-801 (986)
44 PRK02231 ppnK inorganic polyph 93.4 0.45 9.7E-06 45.9 8.9 69 147-232 42-111 (272)
45 PLN02929 NADH kinase 93.2 0.48 1E-05 46.3 8.9 77 145-232 62-149 (301)
46 COG0061 nadF NAD kinase [Coenz 92.3 0.79 1.7E-05 44.3 9.1 71 146-233 54-124 (281)
47 PRK04761 ppnK inorganic polyph 91.1 0.33 7.2E-06 46.1 4.9 37 145-188 23-59 (246)
48 KOG2178 Predicted sugar kinase 82.2 2.5 5.5E-05 42.5 5.4 67 147-230 168-234 (409)
49 cd08197 DOIS 2-deoxy-scyllo-in 81.6 4.3 9.2E-05 40.6 6.9 99 81-191 24-125 (355)
50 PF10254 Pacs-1: PACS-1 cytoso 80.7 5.5 0.00012 40.6 7.3 50 148-198 76-128 (414)
51 cd08170 GlyDH Glycerol dehydro 80.3 10 0.00023 37.5 9.2 95 81-195 23-120 (351)
52 cd08172 GlyDH-like1 Glycerol d 79.5 9.3 0.0002 37.9 8.6 94 81-195 24-119 (347)
53 cd08194 Fe-ADH6 Iron-containin 79.0 12 0.00027 37.4 9.3 101 81-194 24-140 (375)
54 cd08171 GlyDH-like2 Glycerol d 78.0 11 0.00024 37.4 8.5 94 81-194 23-120 (345)
55 cd08186 Fe-ADH8 Iron-containin 77.7 12 0.00026 37.7 8.8 106 80-197 26-148 (383)
56 KOG4180 Predicted kinase [Gene 77.3 2.3 4.9E-05 41.8 3.2 76 145-234 103-180 (395)
57 cd08183 Fe-ADH2 Iron-containin 75.2 19 0.00042 36.0 9.5 100 81-196 23-141 (374)
58 cd08181 PPD-like 1,3-propanedi 75.1 18 0.0004 36.0 9.3 104 81-196 26-144 (357)
59 cd08169 DHQ-like Dehydroquinat 75.0 10 0.00023 37.6 7.4 97 80-191 23-124 (344)
60 PF00731 AIRC: AIR carboxylase 74.5 15 0.00033 32.3 7.4 81 91-189 7-89 (150)
61 cd07766 DHQ_Fe-ADH Dehydroquin 73.3 12 0.00026 36.6 7.4 92 80-189 23-117 (332)
62 cd08180 PDD 1,3-propanediol de 71.2 17 0.00037 35.7 7.9 101 81-194 23-127 (332)
63 COG1454 EutG Alcohol dehydroge 70.8 27 0.00058 35.4 9.2 107 79-198 28-150 (377)
64 cd08187 BDH Butanol dehydrogen 69.1 24 0.00052 35.5 8.6 105 81-197 29-149 (382)
65 cd08195 DHQS Dehydroquinate sy 69.0 14 0.0003 36.6 6.7 95 80-186 24-119 (345)
66 cd08185 Fe-ADH1 Iron-containin 68.5 30 0.00066 34.7 9.2 106 81-198 26-152 (380)
67 cd08189 Fe-ADH5 Iron-containin 68.4 31 0.00068 34.5 9.2 104 80-196 26-146 (374)
68 cd08173 Gro1PDH Sn-glycerol-1- 68.1 47 0.001 32.7 10.3 87 80-187 25-111 (339)
69 TIGR03405 Phn_Fe-ADH phosphona 67.9 37 0.00081 33.8 9.6 105 81-196 24-146 (355)
70 PRK00002 aroB 3-dehydroquinate 67.7 17 0.00037 36.2 7.1 97 80-191 31-133 (358)
71 PRK09423 gldA glycerol dehydro 67.4 42 0.0009 33.5 9.8 95 81-195 30-127 (366)
72 cd08176 LPO Lactadehyde:propan 67.2 29 0.00064 34.7 8.7 104 81-197 29-148 (377)
73 cd08179 NADPH_BDH NADPH-depend 67.0 28 0.00061 34.8 8.6 104 81-196 24-146 (375)
74 cd08551 Fe-ADH iron-containing 66.5 18 0.0004 36.0 7.1 104 80-196 23-142 (370)
75 cd08192 Fe-ADH7 Iron-containin 66.0 36 0.00078 33.9 9.1 102 81-195 25-146 (370)
76 cd08191 HHD 6-hydroxyhexanoate 65.8 34 0.00074 34.4 8.9 102 81-195 23-140 (386)
77 PF00465 Fe-ADH: Iron-containi 65.4 17 0.00038 36.1 6.7 104 82-198 23-143 (366)
78 TIGR02638 lactal_redase lactal 63.9 39 0.00084 33.9 8.9 104 80-196 29-150 (379)
79 cd08550 GlyDH-like Glycerol_de 63.1 38 0.00082 33.6 8.5 94 81-194 23-119 (349)
80 cd08177 MAR Maleylacetate redu 62.9 34 0.00074 33.7 8.2 91 81-191 24-115 (337)
81 PRK15138 aldehyde reductase; P 62.1 41 0.00089 34.0 8.7 105 81-197 30-151 (387)
82 TIGR01357 aroB 3-dehydroquinat 61.8 25 0.00054 34.8 7.0 91 81-186 21-115 (344)
83 PRK15454 ethanol dehydrogenase 61.2 51 0.0011 33.4 9.2 91 98-198 64-170 (395)
84 PLN00180 NDF6 (NDH-dependent f 60.9 1.8 3.8E-05 38.0 -1.2 14 152-165 129-142 (180)
85 PRK10624 L-1,2-propanediol oxi 60.6 51 0.0011 33.1 9.0 105 80-197 30-152 (382)
86 PF00782 DSPc: Dual specificit 60.4 4.3 9.3E-05 33.8 1.1 33 16-48 65-98 (133)
87 cd08174 G1PDH-like Glycerol-1- 59.3 72 0.0016 31.3 9.7 33 147-186 75-107 (331)
88 PRK09860 putative alcohol dehy 59.1 59 0.0013 32.7 9.2 106 80-198 31-152 (383)
89 PF13685 Fe-ADH_2: Iron-contai 55.4 48 0.001 31.5 7.4 93 81-191 20-112 (250)
90 cd08178 AAD_C C-terminal alcoh 54.6 59 0.0013 32.9 8.4 104 80-196 21-151 (398)
91 PTZ00286 6-phospho-1-fructokin 53.9 34 0.00074 35.6 6.6 51 146-198 175-228 (459)
92 TIGR02483 PFK_mixed phosphofru 53.5 32 0.00069 34.1 6.0 41 146-194 93-133 (324)
93 cd08184 Fe-ADH3 Iron-containin 52.1 68 0.0015 31.9 8.2 50 147-197 81-144 (347)
94 TIGR01162 purE phosphoribosyla 51.7 96 0.0021 27.5 8.1 75 97-189 11-87 (156)
95 smart00195 DSPc Dual specifici 51.3 6.7 0.00015 32.9 0.8 33 16-48 70-103 (138)
96 cd08188 Fe-ADH4 Iron-containin 51.2 1E+02 0.0023 30.8 9.5 102 80-194 28-145 (377)
97 PRK06756 flavodoxin; Provision 50.8 82 0.0018 26.8 7.6 30 80-111 1-30 (148)
98 cd08549 G1PDH_related Glycerol 49.7 68 0.0015 31.6 7.8 85 81-186 25-112 (332)
99 PRK10586 putative oxidoreducta 48.4 1.2E+02 0.0027 30.3 9.4 37 147-190 86-124 (362)
100 PRK06203 aroB 3-dehydroquinate 48.4 1.1E+02 0.0025 30.9 9.3 99 80-186 42-145 (389)
101 cd08198 DHQS-like2 Dehydroquin 48.1 1.5E+02 0.0033 29.9 10.0 99 80-186 30-133 (369)
102 COG2453 CDC14 Predicted protei 48.0 7.7 0.00017 34.8 0.7 34 15-48 96-130 (180)
103 cd08190 HOT Hydroxyacid-oxoaci 47.3 1E+02 0.0022 31.4 8.9 104 80-196 23-148 (414)
104 PLN02564 6-phosphofructokinase 46.7 43 0.00092 35.1 5.9 45 146-193 175-220 (484)
105 cd08199 EEVS 2-epi-5-epi-valio 46.5 61 0.0013 32.4 6.9 95 80-186 26-122 (354)
106 PRK06830 diphosphate--fructose 45.5 48 0.001 34.3 6.0 51 146-198 171-224 (443)
107 TIGR02482 PFKA_ATP 6-phosphofr 44.1 66 0.0014 31.5 6.5 42 146-194 90-131 (301)
108 cd08182 HEPD Hydroxyethylphosp 43.8 1.7E+02 0.0038 29.0 9.7 49 146-195 76-142 (367)
109 cd08175 G1PDH Glycerol-1-phosp 41.7 73 0.0016 31.4 6.6 87 81-186 24-112 (348)
110 PLN02834 3-dehydroquinate synt 41.6 70 0.0015 32.9 6.6 95 80-187 100-198 (433)
111 PF12219 End_tail_spike: Catal 41.5 13 0.00029 32.0 1.1 13 149-161 86-98 (160)
112 PRK00843 egsA NAD(P)-dependent 40.8 1.2E+02 0.0026 30.1 8.0 85 81-186 35-119 (350)
113 cd00127 DSPc Dual specificity 38.2 15 0.00032 30.6 0.9 32 17-48 74-106 (139)
114 cd08193 HVD 5-hydroxyvalerate 37.1 1.9E+02 0.0042 28.8 8.9 103 80-195 26-144 (376)
115 smart00045 DAGKa Diacylglycero 36.2 34 0.00075 29.8 3.0 25 346-370 134-160 (160)
116 PRK14071 6-phosphofructokinase 36.1 92 0.002 31.3 6.3 46 146-198 106-154 (360)
117 PRK09267 flavodoxin FldA; Vali 35.6 2.7E+02 0.0058 24.1 8.7 27 81-109 2-28 (169)
118 cd00763 Bacterial_PFK Phosphof 35.4 1.8E+02 0.0039 28.7 8.1 41 146-194 91-131 (317)
119 PRK05948 precorrin-2 methyltra 35.3 1.8E+02 0.0038 27.4 7.8 48 146-198 91-143 (238)
120 KOG1719 Dual specificity phosp 35.1 20 0.00044 31.8 1.3 34 15-48 100-134 (183)
121 PRK14021 bifunctional shikimat 34.3 1.8E+02 0.004 30.8 8.6 36 146-186 268-303 (542)
122 PRK14072 6-phosphofructokinase 33.3 1E+02 0.0022 31.6 6.2 48 146-195 102-149 (416)
123 cd08196 DHQS-like1 Dehydroquin 33.3 2.4E+02 0.0051 28.1 8.7 90 81-185 20-109 (346)
124 cd01836 FeeA_FeeB_like SGNH_hy 32.8 1.1E+02 0.0023 26.8 5.7 59 150-219 44-102 (191)
125 cd00363 PFK Phosphofructokinas 32.4 2E+02 0.0043 28.6 8.0 45 146-193 91-136 (338)
126 COG0337 AroB 3-dehydroquinate 31.7 3.4E+02 0.0074 27.4 9.4 82 78-168 31-114 (360)
127 cd00764 Eukaryotic_PFK Phospho 31.7 1.8E+02 0.0039 32.4 8.1 47 146-193 477-523 (762)
128 TIGR00730 conserved hypothetic 31.3 62 0.0013 29.1 3.8 47 129-187 19-66 (178)
129 PRK03202 6-phosphofructokinase 31.1 2.1E+02 0.0046 28.2 7.9 41 146-194 92-132 (320)
130 PRK13805 bifunctional acetalde 30.5 2.9E+02 0.0063 31.1 9.7 76 79-167 479-558 (862)
131 PRK00536 speE spermidine synth 29.7 39 0.00084 32.4 2.3 19 147-165 73-92 (262)
132 PLN02884 6-phosphofructokinase 29.1 1.1E+02 0.0023 31.5 5.5 46 146-193 142-187 (411)
133 COG1979 Uncharacterized oxidor 27.4 1.5E+02 0.0034 29.6 6.0 66 80-156 29-94 (384)
134 PF07315 DUF1462: Protein of u 25.3 34 0.00075 27.4 0.9 54 321-374 7-81 (93)
135 COG0371 GldA Glycerol dehydrog 24.8 3.6E+02 0.0077 27.2 8.2 94 81-195 31-125 (360)
136 PTZ00393 protein tyrosine phos 23.7 34 0.00074 32.4 0.7 30 18-47 164-194 (241)
137 TIGR02478 6PF1K_euk 6-phosphof 23.3 1.7E+02 0.0038 32.4 6.2 46 147-193 478-523 (745)
138 PRK06555 pyrophosphate--fructo 22.9 3.1E+02 0.0068 28.1 7.5 46 146-193 111-156 (403)
139 cd04502 SGNH_hydrolase_like_7 22.8 1.2E+02 0.0026 26.0 4.1 59 151-219 27-85 (171)
140 COG1646 Predicted phosphate-bi 22.1 4.2E+02 0.0091 25.1 7.5 82 100-194 4-85 (240)
141 TIGR01752 flav_long flavodoxin 21.6 5.4E+02 0.012 22.3 9.0 25 83-109 2-26 (167)
142 TIGR00725 conserved hypothetic 21.0 1.1E+02 0.0024 26.9 3.4 27 151-185 96-122 (159)
143 PRK07085 diphosphate--fructose 21.0 1.5E+02 0.0033 31.7 5.0 45 147-193 164-208 (555)
144 PLN02948 phosphoribosylaminoim 20.3 3.1E+02 0.0068 29.3 7.3 85 83-189 413-499 (577)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-58 Score=471.64 Aligned_cols=320 Identities=34% Similarity=0.527 Sum_probs=252.1
Q ss_pred ccccchhee---hhhhcCcce-eEecccccccccchhhhhhHHhhHHHhhhcCCCCCCcc------CCCceecCCCCCCC
Q 017217 10 IAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTC------QSDVIVDGNGVQPP 79 (375)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 79 (375)
.+.+.|.|+ -|.+|-.-. .+||++.+++++.+|.+++++....+ .++.+...... -...+.+......+
T Consensus 192 ~~~~~c~~~~~~~h~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (634)
T KOG1169|consen 192 LTGPRCGWCQIRVHDKCKSELSQECDLGELKDHILPPSTLRPARTARV-ASDHSGLPGEKSEEVTDAKKMQQLLVTDPPD 270 (634)
T ss_pred ccccccceeeeeeecchHHHHhhhccChhhhhccCCceeeeccccccc-ccccccccccccccccccccccccccCCCCC
Confidence 345677775 344454433 69999999999999999998766521 00111110000 00111223567788
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeec-ccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVK-PHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~-p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
..|++|||||+||+++|+.++++++.+|++.|||||...+ |... ..+.++ .+..+|+||||||
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~g--------L~l~~~--------~~~~riLVcGGDG 334 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPG--------LTLFRD--------VPDFRILVCGGDG 334 (634)
T ss_pred CcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCchh--------HHHHHh--------CCcceEEEecCCC
Confidence 9999999999999999999999999999999999998774 5432 223322 2455999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCC
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~ 238 (375)
||+||++.+.+.+..+....||+||+|+||||||||+|+||++|++.+.. +.++|+.|..+.+.++|+|+|.+.+++++
T Consensus 335 TvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~ 413 (634)
T KOG1169|consen 335 TVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGE 413 (634)
T ss_pred cchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccc
Confidence 99999999998876666789999999999999999999999999998766 88899999999999999999999887765
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhcCCCcccccccccceeeceeec
Q 017217 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (375)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~p~~~~~r~~Nk~~Y~~~~~~ 318 (375)
.. +++.++. ++.-+....+|+||||||+||+|+|+||.+|+++|++|+||+.||+||+.||.
T Consensus 414 ~~--~~~~~~~---------------~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~- 475 (634)
T KOG1169|consen 414 LV--QYSLKPP---------------EKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGT- 475 (634)
T ss_pred cc--cccccCC---------------CcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecc-
Confidence 43 4443322 01112246799999999999999999999999999999999999999999997
Q ss_pred ccceecccCCCchhhhhhhhheeEeccccCCccEEEEeCCCCceEEEEeCCcccCCC
Q 017217 319 QGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKRWSSNIWCEGNSCFESS 375 (375)
Q Consensus 319 ~~~~~ap~~~~~~~~~l~~~~~l~~~~v~~~~~~~i~i~~~~~~iv~ldges~~~~~ 375 (375)
+.||++.|... .++++...+.+|++|++|.++||||+||+.||++|+
T Consensus 476 q~~f~~~ck~~----------~~~i~i~~~~d~~dl~~p~sleGIv~LNIpS~ggG~ 522 (634)
T KOG1169|consen 476 QETFAARCKNL----------HLHIKIELDGDGEDLELPKSLEGIVVLNIPSWGGGS 522 (634)
T ss_pred hhhHHHhhcCC----------ccceEEEEcccceEccCCCCceeEEEEcccccccCc
Confidence 67899998852 345555566899999999999999999999999985
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-51 Score=402.75 Aligned_cols=294 Identities=29% Similarity=0.523 Sum_probs=220.6
Q ss_pred EecccccccccchhhhhhHHhhH--HHh-hhcCCCCCCc--------cC--CCceecCCCCCCCCCcEEEEEcCCCCCCC
Q 017217 29 RIDKEDLRRKLSIPEYLRVAMSN--AIR-RKEGEPPADT--------CQ--SDVIVDGNGVQPPEAPMVVFINSRSGGRH 95 (375)
Q Consensus 29 ~~~~~~~r~~~~~p~yl~~~~~~--~~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~llviiNP~SG~~~ 95 (375)
.|.+|.+..+||+|+||+...+- +++ +|.++..+.. .. ...+++...+++.++|++|||||+|||++
T Consensus 301 pCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsSplmkPLLVFVNPKSGGNq 380 (1004)
T KOG0782|consen 301 PCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQ 380 (1004)
T ss_pred cccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCCCCCCceEEEecCCCCCcc
Confidence 79999999999999999876332 222 1111111111 11 22334566778889999999999999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCC
Q 017217 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGR 175 (375)
Q Consensus 96 g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~ 175 (375)
|.++++.|.++|+++|+||++..+|.. +-|+-++ ..+.+|++|||||||+||+..|..++ .
T Consensus 381 GsK~lq~f~WyLNPRQVFDlsq~GPK~--------aLEmyRK--------V~nLRILaCGGDGTVGWiLStLD~L~---l 441 (1004)
T KOG0782|consen 381 GSKALQTFCWYLNPRQVFDLSQLGPKF--------ALEMYRK--------VVNLRILACGGDGTVGWILSTLDNLN---L 441 (1004)
T ss_pred hHHHHHHHHHhcChhhheehhccCcHH--------HHHHHHh--------ccceEEEEecCCCceeehhhhhhhcC---C
Confidence 999999999999999999998876653 4455442 23489999999999999999998864 4
Q ss_pred CCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCccCCCCCCCCCcccccc
Q 017217 176 EPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALD 255 (375)
Q Consensus 176 ~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (375)
.+.||+||+|+||||||||+|+||++|... .+.++|+.+.+|.++.+|+|.+.++ |+.+.+. + ..+
T Consensus 442 ~p~PPvailPLGTGNDLARtlnWGGgytDE---PvSkil~~ve~gtvVqLDRW~lhvE-pNp~~~p--------E--e~d 507 (1004)
T KOG0782|consen 442 PPYPPVAILPLGTGNDLARTLNWGGGYTDE---PVSKILQAVEHGTVVQLDRWRLHVE-PNPSCNP--------E--EED 507 (1004)
T ss_pred CCCCCeeEeecCCcchHHHhcccCCCcCcc---hHHHHHHHHhcCcEEeeeeeeeccc-CCCCCCh--------h--hhc
Confidence 688999999999999999999999999875 5677888999999999999999883 4332110 0 123
Q ss_pred ccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhcCCCcccccccccceeeceeecccceecccCCCchhhhh
Q 017217 256 QGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGL 335 (375)
Q Consensus 256 ~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~p~~~~~r~~Nk~~Y~~~~~~~~~~~ap~~~~~~~~~l 335 (375)
+|.. ..+|. .+|+||||+||||+|+++||+.|+.+|++|+||++|||+|++.++.+.+ .-+++.|
T Consensus 508 dG~~--~~LPL------~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl-------~rSskDL 572 (1004)
T KOG0782|consen 508 DGMQ--SALPL------TVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFL-------KRSSKDL 572 (1004)
T ss_pred ccch--hccch------hHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHH-------hhhhHHh
Confidence 3331 23343 4899999999999999999999999999999999999999999987731 1234556
Q ss_pred hhhheeEeccccC-CccEEEEeCCCCceEEEEeCCcccCC
Q 017217 336 KNILRMHVKKVNC-SEWEQVAVPKRWSSNIWCEGNSCFES 374 (375)
Q Consensus 336 ~~~~~l~~~~v~~-~~~~~i~i~~~~~~iv~ldges~~~~ 374 (375)
.+-+++..+.++- .+-+++ ...-||.+|+.-|..|
T Consensus 573 ~khi~vvCDG~DlTPkIqeL----K~qCivFlNIprYcaG 608 (1004)
T KOG0782|consen 573 CKHITVVCDGVDLTPKIQEL----KLQCIVFLNIPRYCAG 608 (1004)
T ss_pred hhheEEEecCccCChhhhhc----ccceEEEecchhhhcC
Confidence 5556665555421 222333 2357999999876554
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=286.42 Aligned_cols=216 Identities=21% Similarity=0.217 Sum_probs=168.7
Q ss_pred heehhhhcCcce-eEecccccccccchhhhhhHHh----hHHHhhhcCCCCCCccCCCcee--c----CCCCCCCCCcEE
Q 017217 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAM----SNAIRRKEGEPPADTCQSDVIV--D----GNGVQPPEAPMV 84 (375)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~----~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~ll 84 (375)
.++..++.|.+| |||..|..|+..++.+||.... .+...+..++.|+...+|..|. + +......+++++
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~~~~~ 246 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIHKRAW 246 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccCCceE
Confidence 446778889999 9999999999999999998542 2234455666676666777665 2 456666688999
Q ss_pred EEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHH
Q 017217 85 VFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL 164 (375)
Q Consensus 85 viiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eVl 164 (375)
+|+||+||++++.+.++++++.|.+. +++.. ..|+..+|++++++++. ..+.+.|+++|||||||||+
T Consensus 247 iI~NP~SG~g~~~~~~~~i~~~L~~~--~~~~v-----~~t~~~~~a~~la~~~~-----~~~~d~Viv~GGDGTl~ev~ 314 (547)
T PRK12361 247 LIANPVSGGGKWQEYGEQIQRELKAY--FDLTV-----KLTTPEISAEALAKQAR-----KAGADIVIACGGDGTVTEVA 314 (547)
T ss_pred EEECCCCCCCcHHHHHHHHHHHHhcC--CceEE-----EECCCCccHHHHHHHHH-----hcCCCEEEEECCCcHHHHHH
Confidence 99999999999999999999999764 34432 45556788999987642 24568999999999999999
Q ss_pred HHHhhcccCCCCCCCcEEEeeCCCccchhhhh-CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCccCCC
Q 017217 165 GSVGELNKQGREPVPPVAIIPLGTGNDLSRSF-GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (375)
Q Consensus 165 n~L~~~~~~~~~~~~plgiIPlGTGNdlAr~L-g~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~~~~p 243 (375)
|+|.+ .++||||||+||||||||+| |++..+ .++.++ ++.|.+|+.+++|++.+.
T Consensus 315 ~~l~~-------~~~~lgiiP~GTgNdfAr~L~gi~~~~-~~~~~a----~~~i~~g~~~~iD~g~vn------------ 370 (547)
T PRK12361 315 SELVN-------TDITLGIIPLGTANALSHALFGLGSKL-IPVEQA----CDNIIQGHTQRIDTARCN------------ 370 (547)
T ss_pred HHHhc-------CCCCEEEecCCchhHHHHHhcCCCCCC-ccHHHH----HHHHHhCCCeEEEEEEEc------------
Confidence 99975 57899999999999999999 886421 234444 455778999999997531
Q ss_pred CCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhh
Q 017217 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLR 295 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R 295 (375)
+++|+|++|+||||+|+...++.+
T Consensus 371 ----------------------------~~~fln~agiG~da~v~~~~~~~~ 394 (547)
T PRK12361 371 ----------------------------DRLMLLLVGIGFEQKMIESADRER 394 (547)
T ss_pred ----------------------------CeEEEEEEeechhHHHHHhccHHH
Confidence 258999999999999998866543
No 4
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=253.85 Aligned_cols=235 Identities=22% Similarity=0.229 Sum_probs=162.3
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
..++++++|+||.||++++.+.++++.+.|.... +++.. +.|+..+|++++++++. ..+.|.||++|||
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g-~~~~~-----~~t~~~~~~~~~a~~~~-----~~~~d~vvv~GGD 74 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRG-VDVVE-----IVGTDAHDARHLVAAAL-----AKGTDALVVVGGD 74 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcC-CeEEE-----EEeCCHHHHHHHHHHHH-----hcCCCEEEEECCc
Confidence 3468999999999999998888888888886654 44432 45566789999987643 2456899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCC
Q 017217 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSG 237 (375)
Q Consensus 158 GTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~ 237 (375)
||||+|+|+|.. .++||||||+||||||||+||++. .++.++ ++.+.+|+++++|+++|... +
T Consensus 75 GTi~evv~~l~~-------~~~~lgiiP~GT~NdfAr~lg~~~---~~~~~a----~~~i~~g~~~~iDlg~v~~~--~- 137 (306)
T PRK11914 75 GVISNALQVLAG-------TDIPLGIIPAGTGNDHAREFGIPT---GDPEAA----ADVIVDGWTETVDLGRIQDD--D- 137 (306)
T ss_pred hHHHHHhHHhcc-------CCCcEEEEeCCCcchhHHHcCCCC---CCHHHH----HHHHHcCCceEEEEEEEecC--C-
Confidence 999999999974 578999999999999999999842 134444 45677899999999976431 0
Q ss_pred CccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhh-----------------cCCC
Q 017217 238 EVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRN-----------------EKPY 300 (375)
Q Consensus 238 ~~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~-----------------~~p~ 300 (375)
+ ..++|+|.+|+||||.|++..++.|. .+|+
T Consensus 138 ------------------------~--------~~~~f~n~~~~G~~a~v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~ 185 (306)
T PRK11914 138 ------------------------G--------IVKWFGTVAATGFDSLVTDRANRMRWPHGRMRYNLAMLAELSKLRPL 185 (306)
T ss_pred ------------------------C--------CcEEEEEEEeeehHHHHHHHHHhccccCCchhhHHHHHHHHHhcCCC
Confidence 0 13689999999999999887766543 1233
Q ss_pred cccccccc------cceeec----eeecccceecccCC-------------CchhhhhhhhheeEec------cccCCcc
Q 017217 301 LAQGPISN------KLIYSG----YSCTQGWFLTPCIS-------------DPNLRGLKNILRMHVK------KVNCSEW 351 (375)
Q Consensus 301 ~~~~r~~N------k~~Y~~----~~~~~~~~~ap~~~-------------~~~~~~l~~~~~l~~~------~v~~~~~ 351 (375)
.+.-..-+ +.+... -..++++.++|-+. .+.+..++.+.+++.. .+...+.
T Consensus 186 ~~~i~~dg~~~~~~~~~~~~v~N~~~~GG~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~ 265 (306)
T PRK11914 186 PFRLVLDGTEEIVTDLTLAAFGNTRSYGGGMLICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARA 265 (306)
T ss_pred cEEEEEeCCeEEEeeEEEEEEeCcccccCCceeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEe
Confidence 22111111 111111 12246667888433 1344444444444322 2455677
Q ss_pred EEEEeCCCCceEEEEeCCcccC
Q 017217 352 EQVAVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 352 ~~i~i~~~~~~iv~ldges~~~ 373 (375)
++|.|... +..+++|||.+..
T Consensus 266 ~~i~i~~~-~~~~~~DGE~~~~ 286 (306)
T PRK11914 266 KTVHVECP-GINAYADGDFACP 286 (306)
T ss_pred EEEEEEcC-CcceecCCCcCCC
Confidence 89999764 4578999997653
No 5
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=253.10 Aligned_cols=230 Identities=23% Similarity=0.301 Sum_probs=167.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++.+|+||.||++++.+.++++++.|..+. +++.. ..++..+|+.++++++. ..++|.|+++|||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g-~~~~~-----~~t~~~g~a~~~a~~a~-----~~~~D~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAG-HELSV-----RVTEEAGDAIEIAREAA-----VEGYDTVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcC-CeEEE-----EEeecCccHHHHHHHHH-----hcCCCEEEEecCcch
Confidence 67899999999999999999999999998764 45443 34445589999998864 347999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCc-EEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCC
Q 017217 160 VGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~p-lgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~ 238 (375)
||||+|+|.+. +.+ |||||+||+|||||+||| |.+ .+..+++.+.+|+++.+|++++
T Consensus 71 v~evingl~~~-------~~~~LgilP~GT~NdfAr~Lgi----p~~---~~~~Al~~i~~g~~~~vDlg~~-------- 128 (301)
T COG1597 71 VNEVANGLAGT-------DDPPLGILPGGTANDFARALGI----PLD---DIEAALELIKSGETRKVDLGQV-------- 128 (301)
T ss_pred HHHHHHHHhcC-------CCCceEEecCCchHHHHHHcCC----Cch---hHHHHHHHHHcCCeEEEeehhc--------
Confidence 99999999973 333 999999999999999999 442 2455567788999999999731
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhc------------------CCC
Q 017217 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNE------------------KPY 300 (375)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~------------------~p~ 300 (375)
++ ..||+|.+|+||||+++++.+..|.. +|.
T Consensus 129 ----------------------~~---------~~~fin~a~~G~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~ 177 (301)
T COG1597 129 ----------------------NG---------RRYFINNAGIGFDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPF 177 (301)
T ss_pred ----------------------CC---------cceEEEEeecchhHHHHHhhcHHHHhccchHHHHHHHHHhccccCCC
Confidence 11 12999999999999999998876654 333
Q ss_pred cccccccccceeec------e---eecccceecccCC-------------CchhhhhhhhheeE----ecc--ccCCccE
Q 017217 301 LAQGPISNKLIYSG------Y---SCTQGWFLTPCIS-------------DPNLRGLKNILRMH----VKK--VNCSEWE 352 (375)
Q Consensus 301 ~~~~r~~Nk~~Y~~------~---~~~~~~~~ap~~~-------------~~~~~~l~~~~~l~----~~~--v~~~~~~ 352 (375)
.+.-..-++.+... + ..++++.++|-+. .+.++.+..+..++ .+. |...+.+
T Consensus 178 ~~~i~~d~~~~~~~~~~~~~~~~~~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~ 257 (301)
T COG1597 178 RIEIEYDGKTFEGEALALLVFNGNSYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAK 257 (301)
T ss_pred cEEEEEcCcEEEEEEEEEEEecCcccccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEecc
Confidence 32222222222211 0 1245566776443 13455555555543 222 5667788
Q ss_pred EEEeCCCCceEEEEeCCcccC
Q 017217 353 QVAVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 353 ~i~i~~~~~~iv~ldges~~~ 373 (375)
+++|+++.+-.+++|||+++.
T Consensus 258 ~~~i~~~~~~~~~~DGE~~~~ 278 (301)
T COG1597 258 KLEITSDPPIPVNLDGEYLGK 278 (301)
T ss_pred EEEEEcCCCceEeeCCccCCC
Confidence 999999989999999997654
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=99.97 E-value=4.4e-30 Score=248.80 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=152.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++++|+||.||++++.+.++++.+.|.+.. +++.... +....+. +.++++. ....+.|+++|||||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g-~~~~~~~-----~~~~~~~-~~~~~~~-----~~~~d~vi~~GGDGT 68 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKG-YLVVPYR-----ISLEYDL-KNAFKDI-----DESYKYILIAGGDGT 68 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCC-cEEEEEE-----ccCcchH-HHHHHHh-----hcCCCEEEEECCccH
Confidence 36799999999999988788888888887654 4433211 1112222 3333221 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCc
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~ 239 (375)
||+|+|+|.+. ..++||||||+||||||||+||+ |.++.+++ +.|..|+.+++|++++.
T Consensus 69 v~evv~gl~~~-----~~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~----~~i~~g~~~~vDlg~v~-------- 127 (295)
T PRK13059 69 VDNVVNAMKKL-----NIDLPIGILPVGTANDFAKFLGM----PTDIGEAC----EQILKSKPKKVDLGKIN-------- 127 (295)
T ss_pred HHHHHHHHHhc-----CCCCcEEEECCCCHhHHHHHhCC----CCCHHHHH----HHHHhCCcEEeeEEEEC--------
Confidence 99999999853 25689999999999999999998 55565555 45667999999998642
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhh-h-----------------hcCCCc
Q 017217 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHL-R-----------------NEKPYL 301 (375)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~-R-----------------~~~p~~ 301 (375)
+++|+|++|+||||+|++..+.. + +.+|+.
T Consensus 128 --------------------------------~~~f~n~~~~G~~a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~ 175 (295)
T PRK13059 128 --------------------------------DKYFINVASTGLFTDVSQKTDVNLKNTIGKLAYYLKGLEELPNFRKLK 175 (295)
T ss_pred --------------------------------CEEEEEEEeeeechhhhhhccHHHhhCcchHHHHHHHHHHHhcCCCee
Confidence 25899999999999999887531 1 122222
Q ss_pred cccccccc-----ceeecee---ecccceecccCC-------------CchhhhhhhhheeEec------c-ccCCccEE
Q 017217 302 AQGPISNK-----LIYSGYS---CTQGWFLTPCIS-------------DPNLRGLKNILRMHVK------K-VNCSEWEQ 353 (375)
Q Consensus 302 ~~~r~~Nk-----~~Y~~~~---~~~~~~~ap~~~-------------~~~~~~l~~~~~l~~~------~-v~~~~~~~ 353 (375)
+.-+.-++ .+....+ ..+|+.++|-+. .+.++.+..+.+++.. . +...+.++
T Consensus 176 ~~i~~d~~~~~~~~~~~~v~N~~~~Gg~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~ 255 (295)
T PRK13059 176 VKVTSEEVNFDGDMYLMLVFNGQTAGNFNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDK 255 (295)
T ss_pred EEEEECCEEEEeeEEEEEEEcCccccCcccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeE
Confidence 21111111 1111111 012456777433 2455666665555322 2 44456789
Q ss_pred EEeCCCCceEEEEeCCcccC
Q 017217 354 VAVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 354 i~i~~~~~~iv~ldges~~~ 373 (375)
|.|..+.+..+++|||.+..
T Consensus 256 i~i~~~~~~~~~~DGE~~~~ 275 (295)
T PRK13059 256 LEIESNEEIVTDIDGERGPD 275 (295)
T ss_pred EEEEeCCCceEEeCCCcCCC
Confidence 99987777889999997654
No 7
>PRK13055 putative lipid kinase; Reviewed
Probab=99.97 E-value=5.5e-30 Score=252.21 Aligned_cols=232 Identities=18% Similarity=0.130 Sum_probs=156.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
+++++||+||.||++++.+.+.++++.|.... +++... ..+...+|++++++++. ..+++.||++|||||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g-~~~~i~----~t~~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAG-YETSAF----QTTPEPNSAKNEAKRAA-----EAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcC-CeEEEE----EeecCCccHHHHHHHHh-----hcCCCEEEEECCCCH
Confidence 47899999999999998889999999997755 333221 12234578888887642 245789999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCC-cHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCC
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~-~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~ 238 (375)
||+|+|+|... ...+||||||+||||||||+||+ |. ++.+++ +.+..|+++++|++.+.
T Consensus 72 l~evvngl~~~-----~~~~~LgiiP~GTgNdfAr~Lgi----~~~~~~~a~----~~l~~g~~~~vD~g~v~------- 131 (334)
T PRK13055 72 INEVVNGIAPL-----EKRPKMAIIPAGTTNDYARALKI----PRDNPVEAA----KVILKNQTIKMDIGRAN------- 131 (334)
T ss_pred HHHHHHHHhhc-----CCCCcEEEECCCchhHHHHHcCC----CCcCHHHHH----HHHHcCCcEEeeEEEEC-------
Confidence 99999999853 24689999999999999999999 44 455554 45678999999998642
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhh------------------hhcCCC
Q 017217 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHL------------------RNEKPY 300 (375)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~------------------R~~~p~ 300 (375)
.+++|+|.+|+||||+|++..+.. ++.+|+
T Consensus 132 --------------------------------~~~~F~n~ag~G~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~ 179 (334)
T PRK13055 132 --------------------------------EDKYFINIAAGGSLTELTYSVPSQLKSMFGYLAYLAKGAELLPRVSPV 179 (334)
T ss_pred --------------------------------CCcEEEEEehhccchHHHHhcCHHHHhhccHHHHHHHHHHHHHhcCCe
Confidence 025899999999999999765432 223333
Q ss_pred cccccccc-----cceeece----eecccceecccCC-------------CchhhhhhhhheeEe-cc------ccCCcc
Q 017217 301 LAQGPISN-----KLIYSGY----SCTQGWFLTPCIS-------------DPNLRGLKNILRMHV-KK------VNCSEW 351 (375)
Q Consensus 301 ~~~~r~~N-----k~~Y~~~----~~~~~~~~ap~~~-------------~~~~~~l~~~~~l~~-~~------v~~~~~ 351 (375)
.+.-..-. +...... ..++++.++|-+. .+.+..++.+..++. .+ +...+.
T Consensus 180 ~~~i~~d~~~~~~~~~~~~v~n~~~~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~ 259 (334)
T PRK13055 180 PVRITYDEGVFEGKISMFFLALTNSVGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKT 259 (334)
T ss_pred eEEEEECCEEEEEEEEEEEEEcCcccCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEc
Confidence 33222211 1111101 1245556777333 234444554444433 22 344567
Q ss_pred EEEEeCCCC--ceEEEEeCCcccC
Q 017217 352 EQVAVPKRW--SSNIWCEGNSCFE 373 (375)
Q Consensus 352 ~~i~i~~~~--~~iv~ldges~~~ 373 (375)
+++.|..+. +..+++|||.++.
T Consensus 260 ~~i~I~~~~~~~~~~~iDGE~~~~ 283 (334)
T PRK13055 260 SKLTIEPLGDDRLMVNLDGEYGGD 283 (334)
T ss_pred cEEEEEeCCCCcceEeeCCCcCCC
Confidence 888887543 4789999997653
No 8
>PRK13057 putative lipid kinase; Reviewed
Probab=99.97 E-value=8.2e-30 Score=245.85 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=151.8
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 017217 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (375)
Q Consensus 84 lviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eV 163 (375)
++|+||.||+++ +.++++++.|...+ +++.. ..|+..+|+++++++. ..+++.|+++|||||||||
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g-~~~~~-----~~t~~~~~a~~~~~~~------~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAG-LELVE-----PPAEDPDDLSEVIEAY------ADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcC-CeEEE-----EecCCHHHHHHHHHHH------HcCCCEEEEECchHHHHHH
Confidence 479999999876 46788888887654 34432 4556778899888752 2457899999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCccCCC
Q 017217 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (375)
Q Consensus 164 ln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~~~~p 243 (375)
+|+|.+ .++|||+||+||||||||+||+ |.++.+++ +.+..++.+++|++++.
T Consensus 67 ~~~l~~-------~~~~lgiiP~GT~Ndfar~Lg~----~~~~~~a~----~~i~~~~~~~vD~g~~~------------ 119 (287)
T PRK13057 67 APALVE-------TGLPLGILPLGTANDLARTLGI----PLDLEAAA----RVIATGQVRRIDLGWVN------------ 119 (287)
T ss_pred HHHHhc-------CCCcEEEECCCCccHHHHHcCC----CCCHHHHH----HHHHcCCeEEeeEEEEC------------
Confidence 999975 5789999999999999999999 44555444 55778999999998641
Q ss_pred CCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhh------------------cCCCccccc
Q 017217 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRN------------------EKPYLAQGP 305 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~------------------~~p~~~~~r 305 (375)
.++|+|++|+||||+|++.++..+. .+|+.+.-.
T Consensus 120 ----------------------------~~~f~n~~g~G~da~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~ 171 (287)
T PRK13057 120 ----------------------------GHYFFNVASLGLSAELARRLTKELKRRWGTLGYAIAALRVLRRSRPFTAEIE 171 (287)
T ss_pred ----------------------------CEEEEEEEecCccHHHHHHhhHHhhccCChhHHHHHHHHHHhhCCCeEEEEE
Confidence 2589999999999999987664322 222222111
Q ss_pred c-----cccceeec----eeecccceecccCC-----------C--chhhhhhhhheeEe------ccccCCccEEEEeC
Q 017217 306 I-----SNKLIYSG----YSCTQGWFLTPCIS-----------D--PNLRGLKNILRMHV------KKVNCSEWEQVAVP 357 (375)
Q Consensus 306 ~-----~Nk~~Y~~----~~~~~~~~~ap~~~-----------~--~~~~~l~~~~~l~~------~~v~~~~~~~i~i~ 357 (375)
. ..+.+... -..++++.++|-+. . +.+..+..+..++. +.+...+.+++.|.
T Consensus 172 ~d~~~~~~~~~~~~v~N~~~~gg~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~ 251 (287)
T PRK13057 172 HDGRTERVKTLQVAVGNGRYYGGGMTVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELR 251 (287)
T ss_pred ECCEEEEEEEEEEEEecCcccCCCcccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEE
Confidence 1 11111111 11245666777333 1 23344444443321 22455677899998
Q ss_pred CCCceEEEEeCCccc
Q 017217 358 KRWSSNIWCEGNSCF 372 (375)
Q Consensus 358 ~~~~~iv~ldges~~ 372 (375)
.+.+..+++|||.+.
T Consensus 252 ~~~~~~~~~DGE~~~ 266 (287)
T PRK13057 252 TRKPRPINTDGELTT 266 (287)
T ss_pred eCCCcEEeeCCccCC
Confidence 877889999999764
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=99.97 E-value=6.6e-30 Score=248.47 Aligned_cols=230 Identities=20% Similarity=0.142 Sum_probs=158.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++++|+||+||++++.+.+..+.+.|.+.. +++.. ..|++.+|++++++++. ..+.+.||++|||||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~-~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDGT 69 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAG-YETSA-----HATTGPGDATLAAERAV-----ERKFDLVIAAGGDGT 69 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcC-CEEEE-----EEecCCCCHHHHHHHHH-----hcCCCEEEEEcCCCH
Confidence 46899999999999887777888888887654 34332 45667899999987642 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCc
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~ 239 (375)
||+|+|+|... ...+||||||.||||||||+||+ |.++.+++ +.+..|+.+++|++++.
T Consensus 70 l~~vv~gl~~~-----~~~~~lgiiP~GT~NdfAr~lgi----~~~~~~a~----~~i~~g~~~~vDlg~vn-------- 128 (304)
T PRK13337 70 LNEVVNGIAEK-----ENRPKLGIIPVGTTNDFARALHV----PRDIEKAA----DVIIEGHTVPVDIGKAN-------- 128 (304)
T ss_pred HHHHHHHHhhC-----CCCCcEEEECCcCHhHHHHHcCC----CCCHHHHH----HHHHcCCeEEEEEEEEC--------
Confidence 99999999853 24689999999999999999998 44555554 55678999999997541
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhh------------------hhhcCCCc
Q 017217 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHH------------------LRNEKPYL 301 (375)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~------------------~R~~~p~~ 301 (375)
+++|+|.+|+|+||+|++..+. +++.+++.
T Consensus 129 --------------------------------~~~fln~~g~G~~a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~ 176 (304)
T PRK13337 129 --------------------------------NRYFINIAGGGRLTELTYEVPSKLKTMLGQLAYYLKGIEMLPSLKATD 176 (304)
T ss_pred --------------------------------CEEEEeeehhhHHHHHHHhcCHHHhcCcccHHHHHHHHHHHhhCCCce
Confidence 2589999999999999876542 11223333
Q ss_pred ccccccccce-----ee----ceeecccceecccCC-------------CchhhhhhhhheeEecc------ccCCccEE
Q 017217 302 AQGPISNKLI-----YS----GYSCTQGWFLTPCIS-------------DPNLRGLKNILRMHVKK------VNCSEWEQ 353 (375)
Q Consensus 302 ~~~r~~Nk~~-----Y~----~~~~~~~~~~ap~~~-------------~~~~~~l~~~~~l~~~~------v~~~~~~~ 353 (375)
+....-++.+ .. +-..++++.++|-+. .+.++.++...+++..+ +...+.++
T Consensus 177 ~~i~~d~~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~ 256 (304)
T PRK13337 177 VRIEYDGKLFQGEIMLFLLGLTNSVGGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANR 256 (304)
T ss_pred EEEEECCeEEEeEEEEEEEEcCcccCCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccE
Confidence 2222212211 11 111244555677322 13444455544443222 44556789
Q ss_pred EEeCCCCceEEEEeCCcccC
Q 017217 354 VAVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 354 i~i~~~~~~iv~ldges~~~ 373 (375)
+.|....+..+++|||.+..
T Consensus 257 ~~i~~~~~~~~~iDGE~~~~ 276 (304)
T PRK13337 257 IKVSSFDKMQLNLDGEYGGK 276 (304)
T ss_pred EEEEcCCCCeEEeCCCcCCC
Confidence 99987777889999997653
No 10
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.97 E-value=5.6e-30 Score=262.77 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=124.9
Q ss_pred CCCCcEEEEEcCCCCCCChhhHH-HHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017217 78 PPEAPMVVFINSRSGGRHGPELK-ERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~-~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (375)
..+++++||+||.||++++.+++ +.++++|...+ +++.. ..|++++|+++++++++ ..+++.||++||
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g-i~~~v-----~~T~~~ghA~~la~~~~-----~~~~D~VV~vGG 177 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD-IQLTI-----QETKYQLHAKEVVRTMD-----LSKYDGIVCVSG 177 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC-CeEEE-----EeccCccHHHHHHHHhh-----hcCCCEEEEEcC
Confidence 45789999999999999988876 47888997755 33332 46778899999998753 356899999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhh----CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF----GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 157 DGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~L----g~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
|||||||+|+|....++....++||||||+||||||||+| |+ |.++.+++ ..|..|+.+++|++.+.-
T Consensus 178 DGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gi----p~~~~~A~----~~I~~g~~~~vDlg~v~~ 249 (481)
T PLN02958 178 DGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGE----PCSATNAV----LAIIRGHKCSLDVATILQ 249 (481)
T ss_pred CCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCC----CcCHHHHH----HHHHcCCceEEeEEEEEc
Confidence 9999999999986533222357999999999999999999 76 55555554 457789999999987641
Q ss_pred ecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhh
Q 017217 233 QMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLR 295 (375)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R 295 (375)
+ + ...+|+|.+|+||||+|....++.|
T Consensus 250 ----~-------------------------~-------~~~f~vn~~g~GfdAdV~~~se~kr 276 (481)
T PLN02958 250 ----G-------------------------E-------TKFFSVLMLAWGLVADIDIESEKYR 276 (481)
T ss_pred ----C-------------------------C-------ceEEEEEeeeeehhhhhhccccccc
Confidence 0 0 0123479999999999987655443
No 11
>PRK00861 putative lipid kinase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=245.74 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=119.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++++|+||.||++++.+.+++++..|.+. +++. .+.|+..+|+.++++++. ..+.+.|+++|||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~--~~~~-----~~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE--MDLD-----IYLTTPEIGADQLAQEAI-----ERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc--CceE-----EEEccCCCCHHHHHHHHH-----hcCCCEEEEECChHH
Confidence 4689999999999998878888888888763 2332 145667789999987653 345789999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCc
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~ 239 (375)
+|+|+|+|.. .++|||+||+||||||||+||+ |.++.+++ +.+.+|+++.+|++++.
T Consensus 70 l~evv~~l~~-------~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~----~~i~~g~~~~iDlg~vn-------- 126 (300)
T PRK00861 70 LSAVAGALIG-------TDIPLGIIPRGTANAFAAALGI----PDTIEEAC----RTILQGKTRRVDVAYCN-------- 126 (300)
T ss_pred HHHHHHHHhc-------CCCcEEEEcCCchhHHHHHcCC----CCCHHHHH----HHHHcCCcEEeeEEEEC--------
Confidence 9999999975 5689999999999999999999 44555444 55778999999998631
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhh
Q 017217 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHH 293 (375)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~ 293 (375)
+++|+|.+|+||||+|++..++
T Consensus 127 --------------------------------~~~fin~a~~G~~a~v~~~~~~ 148 (300)
T PRK00861 127 --------------------------------GQPMILLAGIGFEAETVEEADR 148 (300)
T ss_pred --------------------------------CEEEEEEEeccHHHHHHHHhhH
Confidence 2589999999999999988664
No 12
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.96 E-value=3e-29 Score=242.68 Aligned_cols=228 Identities=14% Similarity=0.157 Sum_probs=148.4
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017217 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (375)
Q Consensus 82 ~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~ 161 (375)
++++|+||+||..+ .+.++.+.|.+.. +++.. +.|+..+|++++++++. ..+++.|+++|||||||
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDEG-IQLHV-----RVTWEKGDAQRYVAEAL-----ALGVSTVIAGGGDGTLR 66 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHCC-CeEEE-----EEecCCCCHHHHHHHHH-----HcCCCEEEEEcCChHHH
Confidence 47899999988432 4555666676544 34332 35667789999987653 24578999999999999
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCccC
Q 017217 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVD 241 (375)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~~~ 241 (375)
||+|+|..... ...+|||+||+||||||||+||+ |.++.+++ +.+..|+++++|++.+.
T Consensus 67 ev~ngl~~~~~---~~~~~lgiiP~GTgNdfAr~l~i----p~~~~~a~----~~i~~g~~~~iDlg~v~---------- 125 (293)
T TIGR03702 67 EVATALAQIRD---DAAPALGLLPLGTANDFATAAGI----PLEPAKAL----KLALNGAAQPIDLARVN---------- 125 (293)
T ss_pred HHHHHHHhhCC---CCCCcEEEEcCCchhHHHHhcCC----CCCHHHHH----HHHHhCCceeeeEEEEC----------
Confidence 99999975321 23578999999999999999999 44555444 55678999999998642
Q ss_pred CCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhh------------------cCCCccc
Q 017217 242 PPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRN------------------EKPYLAQ 303 (375)
Q Consensus 242 ~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~------------------~~p~~~~ 303 (375)
+ .++|+|.+|+||||+|+++.++..+ .+++.+.
T Consensus 126 --------------------~---------~~~f~n~~~~G~da~v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~ 176 (293)
T TIGR03702 126 --------------------G---------KHYFLNMATGGFGTRVTTETSEKLKKALGGAAYLITGLTRFSELTAASCE 176 (293)
T ss_pred --------------------C---------ccEEEEEeecccchHhhhhhhHHHHhccchHHHHHHHHHHHhhCCCeEEE
Confidence 1 1489999999999999988654221 1222221
Q ss_pred c-----cccccceee----ceeecccceecccCC-----------CchhhhhhhhheeEec----cccCCccEEEEeCCC
Q 017217 304 G-----PISNKLIYS----GYSCTQGWFLTPCIS-----------DPNLRGLKNILRMHVK----KVNCSEWEQVAVPKR 359 (375)
Q Consensus 304 ~-----r~~Nk~~Y~----~~~~~~~~~~ap~~~-----------~~~~~~l~~~~~l~~~----~v~~~~~~~i~i~~~ 359 (375)
- .+.++.+.. +-..++|+.++|-+. .+.+..+..+..++-. .+...+.+++.|..+
T Consensus 177 i~~~~~~~~~~~~~~~v~N~~~~GGg~~i~P~A~~~DG~Ldv~~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~ 256 (293)
T TIGR03702 177 FRGPDFHWEGDFLALGIGNGRQAGGGQVLCPDALINDGLLDVRILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAP 256 (293)
T ss_pred EEECCEEEEeeEEEEEEECCCcCCCCceeCCCCccCCceEEEEEeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeC
Confidence 1 111111111 112256677888443 2323333333323211 122334567888877
Q ss_pred CceEEEEeCCcccC
Q 017217 360 WSSNIWCEGNSCFE 373 (375)
Q Consensus 360 ~~~iv~ldges~~~ 373 (375)
.+..+++|||.+..
T Consensus 257 ~~~~~~vDGE~~~~ 270 (293)
T TIGR03702 257 QPLTFNLDGEPLSG 270 (293)
T ss_pred CCcEEEECCCcCCC
Confidence 78899999997754
No 13
>PRK13054 lipid kinase; Reviewed
Probab=99.96 E-value=5.8e-29 Score=241.43 Aligned_cols=231 Identities=19% Similarity=0.201 Sum_probs=152.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
.++++++|+||++++ .+.+..+...|.+.+ +++.. ..|+..+|+.++++++. ..+.+.||++||||
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELREAVGLLREEG-HTLHV-----RVTWEKGDAARYVEEAL-----ALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccc---hHHHHHHHHHHHHcC-CEEEE-----EEecCCCcHHHHHHHHH-----HcCCCEEEEECCcc
Confidence 468899999999863 245555666676554 33332 35567789999987652 24578999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCC
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~ 238 (375)
|||+|+|+|.+... ..++|||+||+||||||||+||+ |.++.+++ +.|..|+.++||++++.
T Consensus 68 Tl~evv~~l~~~~~---~~~~~lgiiP~GTgNdfar~lgi----~~~~~~a~----~~i~~g~~~~iDlg~v~------- 129 (300)
T PRK13054 68 TINEVATALAQLEG---DARPALGILPLGTANDFATAAGI----PLEPDKAL----KLAIEGRAQPIDLARVN------- 129 (300)
T ss_pred HHHHHHHHHHhhcc---CCCCcEEEEeCCcHhHHHHhcCC----CCCHHHHH----HHHHhCCceEEEEEEEc-------
Confidence 99999999985321 24689999999999999999998 45555544 55678999999998642
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhh------------------hcCCC
Q 017217 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLR------------------NEKPY 300 (375)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R------------------~~~p~ 300 (375)
+ +++|+|.+|+||||+|+++.++.. +.+|+
T Consensus 130 -----------------------~---------~~~f~n~~~~G~~a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~ 177 (300)
T PRK13054 130 -----------------------D---------RTYFINMATGGFGTRVTTETPEKLKAALGGVAYLIHGLMRMDTLKPD 177 (300)
T ss_pred -----------------------C---------ceEEEEEeecchhHHHHHhhHHHHHhccchHHHHHHHHHHHhhCCCe
Confidence 1 138999999999999998765311 12222
Q ss_pred cccccc-----cccceee----ceeecccceecccCC-----------CchhhhhhhhheeEe------ccccCCccEEE
Q 017217 301 LAQGPI-----SNKLIYS----GYSCTQGWFLTPCIS-----------DPNLRGLKNILRMHV------KKVNCSEWEQV 354 (375)
Q Consensus 301 ~~~~r~-----~Nk~~Y~----~~~~~~~~~~ap~~~-----------~~~~~~l~~~~~l~~------~~v~~~~~~~i 354 (375)
.+.... ..+.+.. .-.+++|+.++|-+. .+.+..+..++.+.. +.+.+.+.+++
T Consensus 178 ~~~i~~d~~~~~~~~~~~~v~N~~~~ggg~~~~p~a~~~DG~ldv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v 257 (300)
T PRK13054 178 RCEIRGPDFHWQGDALVIGIGNGRQAGGGQQLCPEALINDGLLDLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWL 257 (300)
T ss_pred EEEEEeCCcEEEeeEEEEEEECCCcCCCCcccCCCCcCCCCeEEEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEE
Confidence 221111 1111111 111245666777333 232333333333221 22455677899
Q ss_pred EeCCCCceEEEEeCCcccC
Q 017217 355 AVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 355 ~i~~~~~~iv~ldges~~~ 373 (375)
.|.++.+..+++|||.+..
T Consensus 258 ~i~~~~~~~~~iDGE~~~~ 276 (300)
T PRK13054 258 EIQAPHELTFNLDGEPLSG 276 (300)
T ss_pred EEEcCCCCEEEeCCCcCCC
Confidence 9987777899999997653
No 14
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.96 E-value=1.7e-31 Score=273.89 Aligned_cols=187 Identities=27% Similarity=0.443 Sum_probs=139.8
Q ss_pred ccccchhee---hhhhcCcce-eEecccccccccchhhhhhHHhhHHHhhhcCCCCCCccCCCceecCCCCCCCCCcEEE
Q 017217 10 IAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQSDVIVDGNGVQPPEAPMVV 85 (375)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llv 85 (375)
..---|+|+ .|..|-.+. -+|.+|.-+.-.++|..|-....+. ++. .++. ....+-..|++|
T Consensus 134 lqd~rclwc~~~vh~~c~~~~~~~cs~~~~~~svi~ptal~~~~~dg----------~~v--~~~~--a~~~~~~spllv 199 (1099)
T KOG1170|consen 134 LQDYRCLWCGCCVHDTCIGNLARACSLGHSALSVIPPTALKEVTPDG----------TAV--FWEE--AYGGPCGSPLLV 199 (1099)
T ss_pred cCCcceEeeccEeehhhhhhHHhhcccccccccccChhhhcccCCCc----------cee--ehhh--hcCCCCCCceeE
Confidence 333446664 556666555 5788888888888886655433221 111 2222 222256789999
Q ss_pred EEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHH
Q 017217 86 FINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLG 165 (375)
Q Consensus 86 iiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eVln 165 (375)
|+|.+||..+|.++.+++..+|++.|+||+...+|+..++. +. .-+..+|+||||||+|+||+.
T Consensus 200 ~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~~-------f~---------~~d~friLvcggdGsv~wvls 263 (1099)
T KOG1170|consen 200 FINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLTF-------FS---------HFESFRILVCGGDGSVGWVLS 263 (1099)
T ss_pred eecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhhh-------hh---------cccceEEEEecCCCCCcchHH
Confidence 99999999999999999999999999999988777643331 11 124579999999999999999
Q ss_pred HHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEE
Q 017217 166 SVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (375)
Q Consensus 166 ~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~ 231 (375)
.+.... ..+++.++++|+|||||+||.||||..|+.+. .+.++++....+.++.+|.|.|-
T Consensus 264 ~~ds~~---lh~kcql~vlplgtgndlarvlgwg~a~~ddt--~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 264 AIDRLN---LHSKCQLAVLPLGTGNDLARVLGWGHAFYDDT--LLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred HHHhcc---chhhcccccccCCChHHHHHHhcccccCchhh--ccHHHHHHHHhhhhhhhhcchhh
Confidence 998753 45889999999999999999999998776543 34477888888999999999874
No 15
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.96 E-value=4.7e-28 Score=233.94 Aligned_cols=229 Identities=20% Similarity=0.247 Sum_probs=155.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++++|+||.||++++.+.++++.+.|...+. +.+ ..|+..+++.++++++. ..+.+.|+++||||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~-------~~t~~~~~~~~~~~~~~-----~~~~d~ivv~GGDG 68 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHV-------RVTWEKGDAARYVEEAR-----KFGVDTVIAGGGDG 68 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEE-------EEecCcccHHHHHHHHH-----hcCCCEEEEECCCC
Confidence 468999999999998888888899988876653 333 23344456666654321 23578999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCC
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~ 238 (375)
|+++|+|+|... ...+|||+||+||+|||||+||+ |.++.+++ +.+.+++.+++|++++.
T Consensus 69 Tl~~v~~~l~~~-----~~~~~lgiiP~Gt~N~~a~~l~i----~~~~~~~~----~~l~~~~~~~~Dlg~v~------- 128 (293)
T TIGR00147 69 TINEVVNALIQL-----DDIPALGILPLGTANDFARSLGI----PEDLDKAA----KLVIAGDARAIDMGQVN------- 128 (293)
T ss_pred hHHHHHHHHhcC-----CCCCcEEEEcCcCHHHHHHHcCC----CCCHHHHH----HHHHcCCceEEEEEEEC-------
Confidence 999999999753 13479999999999999999998 44555444 55778999999997531
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccce-EEEEeecchhHHHHhHHhh------------------hhhcCC
Q 017217 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHH------------------LRNEKP 299 (375)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~-F~Ny~siG~DA~Va~~f~~------------------~R~~~p 299 (375)
+++ |+|++|+|+||++++.++. +++++|
T Consensus 129 ---------------------------------~~~~fln~~g~G~~a~v~~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~ 175 (293)
T TIGR00147 129 ---------------------------------KQYCFINMAGGGFGTEITTETPEKLKAALGSLSYILSGLMRMDTLQP 175 (293)
T ss_pred ---------------------------------CeEEEEEEEeechhhHhHhhCCHHHHhccchHHHHHHHHHHHhhCCC
Confidence 257 9999999999999887642 223344
Q ss_pred Cccccccccccee---------eceeecccceecccCC-------------CchhhhhhhhheeEecc------ccCCcc
Q 017217 300 YLAQGPISNKLIY---------SGYSCTQGWFLTPCIS-------------DPNLRGLKNILRMHVKK------VNCSEW 351 (375)
Q Consensus 300 ~~~~~r~~Nk~~Y---------~~~~~~~~~~~ap~~~-------------~~~~~~l~~~~~l~~~~------v~~~~~ 351 (375)
+.+.-..-++.+. ..-..++++.++|-+. .+.++.+..++.++..+ +...+.
T Consensus 176 ~~~~i~~d~~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~ 255 (293)
T TIGR00147 176 FRCEIRGEGEHWQGEAVVFLVGNGRQAGGGQKLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKA 255 (293)
T ss_pred eeEEEEECCeEEEeeEEEEEEeCCcccCCCcccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEc
Confidence 4432222222111 0111245666777332 23444454444443222 344567
Q ss_pred EEEEeCCCCceEEEEeCCcccC
Q 017217 352 EQVAVPKRWSSNIWCEGNSCFE 373 (375)
Q Consensus 352 ~~i~i~~~~~~iv~ldges~~~ 373 (375)
+++.|....+..+++|||.+..
T Consensus 256 ~~~~i~~~~~~~~~iDGE~~~~ 277 (293)
T TIGR00147 256 SRIDIQTPHKITFNLDGEPLGG 277 (293)
T ss_pred cEEEEEcCCCcEEEeCCCcCCC
Confidence 8899987777899999998764
No 16
>PLN02204 diacylglycerol kinase
Probab=99.94 E-value=1e-25 Score=232.15 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=132.2
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEE
Q 017217 74 NGVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (375)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv 153 (375)
.......++++|||||.||++++.+.++.+.++|..+.+ ++. ...|++++||.++++++.+ .....+|.||+
T Consensus 153 ~~~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i-~~~-----v~~T~~aghA~d~~~~~~~--~~l~~~D~VVa 224 (601)
T PLN02204 153 NKEVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKV-KTK-----VIVTERAGHAFDVMASISN--KELKSYDGVIA 224 (601)
T ss_pred hhccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCC-eEE-----EEEecCcchHHHHHHHHhh--hhccCCCEEEE
Confidence 334566789999999999999999999999999977653 332 2467788999998865421 11456899999
Q ss_pred EcCchHHHHHHHHHhhccc-------------------------------------C-----------------------
Q 017217 154 AGGDGTVGWVLGSVGELNK-------------------------------------Q----------------------- 173 (375)
Q Consensus 154 ~GGDGTV~eVln~L~~~~~-------------------------------------~----------------------- 173 (375)
+|||||+|||+|+|...+. +
T Consensus 225 VGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (601)
T PLN02204 225 VGGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEG 304 (601)
T ss_pred EcCccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999973210 0
Q ss_pred -------CCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEecCCCCccCCCCCC
Q 017217 174 -------GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSL 246 (375)
Q Consensus 174 -------~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~~~~~~~~~~p~~~ 246 (375)
....+++|||||+|||||||+++.. +.++..++ ..|+.|+.+.+|+++|.-.. ...
T Consensus 305 ~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g----~~dp~taa----~~Ii~G~~~~lDig~V~~~~-~~~-------- 367 (601)
T PLN02204 305 DQDSDFPFPNERFRFGIIPAGSTDAIVMCTTG----ERDPVTSA----LHIILGRRVCLDIAQVVRWK-TTS-------- 367 (601)
T ss_pred cccccccccCCCceEEEECCccHHHHHHHccC----CCCHHHHH----HHHHhCCCeEeeEEEEeccc-ccc--------
Confidence 0124689999999999999999875 45555444 44778999999999875310 000
Q ss_pred CCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhc
Q 017217 247 KPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNE 297 (375)
Q Consensus 247 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~ 297 (375)
.+. .....+||+|.+|+||||+|+++-++.|..
T Consensus 368 -------------~~~-----~~~~~ryf~s~ag~Gf~gdVi~esek~R~m 400 (601)
T PLN02204 368 -------------TSE-----IEPYVRYAASFAGYGFYGDVISESEKYRWM 400 (601)
T ss_pred -------------ccc-----ccccceEEEEEeecchHHHHHHHhhhhccc
Confidence 000 001247999999999999999997776643
No 17
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-23 Score=212.23 Aligned_cols=177 Identities=20% Similarity=0.199 Sum_probs=141.6
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHH-HHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEE
Q 017217 74 NGVQPPEAPMVVFINSRSGGRHGPELK-ERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRI 151 (375)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~~~-~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~I 151 (375)
.......++++|||||.+|+|++.+++ .+++++|.++.+ |++ .+|++++||+++++..+ ..++|.|
T Consensus 173 ~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~ev-------v~T~~~~HArei~rt~d-----l~kyDgI 240 (579)
T KOG1116|consen 173 VDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEV-------VLTTRPNHAREIVRTLD-----LGKYDGI 240 (579)
T ss_pred ccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEE-------EEecCccHHHHHHHhhh-----ccccceE
Confidence 344566788999999999999998877 578888887764 664 57889999999999864 6889999
Q ss_pred EEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEE
Q 017217 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (375)
Q Consensus 152 vv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~ 231 (375)
+++||||+++||+|||..+.+.......|||+||+||||+||.+++|..++ + -++... -.+++|....+|+..+.
T Consensus 241 v~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~--~--~~~~a~-l~iirg~~t~~dv~~v~ 315 (579)
T KOG1116|consen 241 VCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP--D--LPLLAT-LLIIRGRLTPMDVSVVE 315 (579)
T ss_pred EEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc--c--cchHHH-HHHHccCCCchheeehh
Confidence 999999999999999999887666788999999999999999999998763 2 122222 34778999999997665
Q ss_pred EecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhcCCCcc
Q 017217 232 IQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLA 302 (375)
Q Consensus 232 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~p~~~ 302 (375)
... . ...++++....||-|+|-.+-+++|...|..|
T Consensus 316 ~~~---------------------------~--------~~~fSfLs~~wGlIADiDI~SEk~R~mG~~Rf 351 (579)
T KOG1116|consen 316 YAG---------------------------K--------DRHFSFLSAAWGLIADVDIESEKYRWMGPARF 351 (579)
T ss_pred hcc---------------------------C--------cceEEEEeeeeeeEEecccchHHHHhhcchhh
Confidence 410 0 12578889999999999888888776655554
No 18
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.89 E-value=8.4e-23 Score=174.57 Aligned_cols=125 Identities=27% Similarity=0.425 Sum_probs=86.2
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchH
Q 017217 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGT 159 (375)
Q Consensus 82 ~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GGDGT 159 (375)
+++||+||+||++++. ++++.+.|..... +++ +.++..++++.+++.. ..... +.|+++|||||
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~-------~~t~~~~~~~~~~~~~-----~~~~~~~~ivv~GGDGT 66 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEV-------IETESAGHAEALARIL-----ALDDYPDVIVVVGGDGT 66 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEE-------EEESSTTHHHHHHHHH-----HHTTS-SEEEEEESHHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEE-------EEEeccchHHHHHHHH-----hhccCccEEEEEcCccH
Confidence 5899999999999987 4788888876542 333 3344567777776521 13454 89999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEE
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v 230 (375)
+++++|+|.+... ...+|||+||+||||||||+||++. ++.. .....+..+..+++|+.+|
T Consensus 67 l~~vv~~l~~~~~---~~~~~l~iiP~GT~N~~ar~lg~~~----~~~~---~a~~~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 67 LNEVVNGLMGSDR---EDKPPLGIIPAGTGNDFARSLGIPS----DPEA---NAALLIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHHCTSTS---SS--EEEEEE-SSS-HHHHHTT--S----SHHH----HHHHHHHSEEEEEEEEEE
T ss_pred HHHHHHHHhhcCC---CccceEEEecCCChhHHHHHcCCCC----CcHH---HHHHHHHhCCCcEeEEEEe
Confidence 9999999987532 1267999999999999999999954 3333 1122344567779998764
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.87 E-value=8.7e-22 Score=167.37 Aligned_cols=101 Identities=47% Similarity=0.847 Sum_probs=75.7
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 017217 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (375)
Q Consensus 84 lviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eV 163 (375)
+||+||+||++++.+++.+++..+.+.+++... +....++.+++++ ...++.|+++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~--------~~~~~~~~~~~~~-------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLT--------KKGPAAALVIFRD-------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEe--------cCChHHHHHHHhh-------cCcCCEEEEEccccHHHHH
Confidence 589999999999988999998888765433221 1123445454433 2357799999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCC
Q 017217 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGS 201 (375)
Q Consensus 164 ln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~ 201 (375)
+|+|.+.... .+.+|||+||+||||||||+|||+.+
T Consensus 66 vn~l~~~~~~--~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELP--LPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccc--cCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999864211 12289999999999999999999765
No 20
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.75 E-value=2.4e-19 Score=159.07 Aligned_cols=88 Identities=30% Similarity=0.452 Sum_probs=75.9
Q ss_pred eEEEEeecchhHHHHhHHhhhhhcCCCcccccccccceeeceeecccceecccCCCchhhhhhhhheeEeccccCCccEE
Q 017217 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 353 (375)
Q Consensus 274 ~F~Ny~siG~DA~Va~~f~~~R~~~p~~~~~r~~Nk~~Y~~~~~~~~~~~ap~~~~~~~~~l~~~~~l~~~~v~~~~~~~ 353 (375)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+.+|+.+.+ ..+|... ...+++. .++++
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~~~~------~~~i~l~------~dg~~ 67 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSCKNL------PKKIELE------VDGKE 67 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchhcCc------hhhcccc------cCCee
Confidence 499999999999999999999999999999999999999999999865 5566542 2333333 36799
Q ss_pred EEeCCCCceEEEEeCCcccCC
Q 017217 354 VAVPKRWSSNIWCEGNSCFES 374 (375)
Q Consensus 354 i~i~~~~~~iv~ldges~~~~ 374 (375)
+++|.+.++||.+|+.||++|
T Consensus 68 ~~lp~~~~~iv~lNIpSy~gG 88 (161)
T PF00609_consen 68 VDLPSSLESIVFLNIPSYGGG 88 (161)
T ss_pred EeeecceeEEEEEccccccCC
Confidence 999999999999999999987
No 21
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-15 Score=147.27 Aligned_cols=178 Identities=17% Similarity=0.091 Sum_probs=131.6
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEE
Q 017217 74 NGVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (375)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv 153 (375)
+......+.++|||||.+|+|+|.++++.+.+++-. .......+.|+.++||.+..-+... ++...+|.||+
T Consensus 152 ~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~l------a~v~tkvivTErAnhA~d~~~ei~~--~~~~~yDGiv~ 223 (516)
T KOG1115|consen 152 IKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFIL------AKVNTKVIVTERANHAFDVMAEIQN--KELHTYDGIVA 223 (516)
T ss_pred HHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEe------eecceeEEEEccccchhhhhhhCCH--hhhhhcccEEE
Confidence 444566788999999999999999999998776543 3333345788999999987654321 33567899999
Q ss_pred EcCchHHHHHHHHHhhcccC------------CCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCC
Q 017217 154 AGGDGTVGWVLGSVGELNKQ------------GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGP 221 (375)
Q Consensus 154 ~GGDGTV~eVln~L~~~~~~------------~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~ 221 (375)
+||||-.||+++++.-+.+. ...+.+.+||||.||+|...-+-.-. .| ++..+|+ |+-|+
T Consensus 224 VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt----~D---~~TSAlH-I~lG~ 295 (516)
T KOG1115|consen 224 VGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGT----RD---PVTSALH-IILGR 295 (516)
T ss_pred ecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccC----Cc---cccceee-eEecc
Confidence 99999999999998644221 12356789999999999998886422 23 3344454 66799
Q ss_pred eeEeeeeEEEEecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhHHhhhhhcCCCc
Q 017217 222 ICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYL 301 (375)
Q Consensus 222 ~~~iD~w~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~p~~ 301 (375)
...+|++.|.-. ...-||-.|.+|.||-.+|..+-+++|-..|..
T Consensus 296 ~l~vDVctVht~-----------------------------------~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~R 340 (516)
T KOG1115|consen 296 KLFVDVCTVHTI-----------------------------------EKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKR 340 (516)
T ss_pred ceeeeeeeeeec-----------------------------------chheeeehhhhcccccchhhhhhhhhhccCchh
Confidence 999999876421 012467889999999999999999988766655
Q ss_pred c
Q 017217 302 A 302 (375)
Q Consensus 302 ~ 302 (375)
|
T Consensus 341 Y 341 (516)
T KOG1115|consen 341 Y 341 (516)
T ss_pred h
Confidence 3
No 22
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.21 E-value=8.5e-11 Score=114.88 Aligned_cols=138 Identities=20% Similarity=0.121 Sum_probs=94.1
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHH-HHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEE
Q 017217 74 NGVQPPEAPMVVFINSRSGGRHGPELK-ERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIV 152 (375)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~~~-~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Iv 152 (375)
.++....++++|++||.+-.+.....+ +...++|.-++ +++.+ ..|.+.+|++.|+...+ ...|.|+
T Consensus 54 vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG-~~V~I-----vktd~~gqak~l~e~~~------t~~Dii~ 121 (535)
T KOG4435|consen 54 VPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAG-VQVDI-----VKTDNQGQAKALAEAVD------TQEDIIY 121 (535)
T ss_pred CCcccccceEEEEechhhccchhhhhhhcccchheeecc-ceEEE-----EecCcHHHHHHHHHHhc------cCCCeEE
Confidence 455667899999999998876543333 34445555433 56554 45667899999987653 2349999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCC-CCcHHHHHHHHHHHHHcCCe---eEeeee
Q 017217 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSF-PFAWKSAVKRTLQRASAGPI---CRLDSW 228 (375)
Q Consensus 153 v~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~-~~~~~~al~~~l~~i~~g~~---~~iD~w 228 (375)
|+|||||++||+.|++.++ ....|++++|+|--|-...+.-. +-| ..|..+.+..++..+++++. .++|+-
T Consensus 122 VaGGDGT~~eVVTGi~Rrr----~~~~pv~~~P~G~~~l~~~s~l~-~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 122 VAGGDGTIGEVVTGIFRRR----KAQLPVGFYPGGYDNLWLKSMLP-SVFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred EecCCCcHHHhhHHHHhcc----cccCceeeccCccchHhhhhhch-hhhccchHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999999864 36789999999887655444321 111 12344455556666777766 666663
No 23
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.61 E-value=4.1e-08 Score=86.93 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=63.3
Q ss_pred eEEEEeecchhHHHHhHHhhhhhcCCCcccccccccceeeceeecccceecccCCCchhhhhhhhheeEeccccCCccEE
Q 017217 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 353 (375)
Q Consensus 274 ~F~Ny~siG~DA~Va~~f~~~R~~~p~~~~~r~~Nk~~Y~~~~~~~~~~~ap~~~~~~~~~l~~~~~l~~~~v~~~~~~~ 353 (375)
+|+||+|+||||+|++.|++.|+.+|.++++++.+++.|...++...+. ..+. .....+++.++ +++
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~-~~~~------~~~~~~~i~~d------g~~ 67 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFF-RTCK------DLHERIELECD------GVD 67 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhh-cccc------chhhceEEEEC------CEe
Confidence 4899999999999999999999999999988889999998877765321 1111 11112333332 345
Q ss_pred EEeCCCCceEEEEeCCcccCC
Q 017217 354 VAVPKRWSSNIWCEGNSCFES 374 (375)
Q Consensus 354 i~i~~~~~~iv~ldges~~~~ 374 (375)
+..+.....++++|+.+|+++
T Consensus 68 ~~~~~~~~~v~v~N~~~~ggG 88 (160)
T smart00045 68 VDLPNSLEGIAVLNIPSYGGG 88 (160)
T ss_pred ccCCCCccEEEEECCCccccC
Confidence 555545778999999888765
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.47 E-value=1.2e-06 Score=84.37 Aligned_cols=122 Identities=13% Similarity=0.039 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh-ccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE-LGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~-~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
+++.++.|+.. ....++++++.+.|...+ +++.... ..+...+++...+. .. ...+.+.|+++|||||
T Consensus 1 m~v~iv~~~~k--~~~~~~~~~I~~~L~~~g-~~v~v~~---~~~~~~~~~~~~~~~~~-----~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLAYRVYDFLKVSG-YEVVVDS---ETYEHLPEFSEEDVLPL-----EEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEec---chhhhcCcccccccccc-----cccCCCEEEEEeCcHH
Confidence 35788888754 455678888888887654 3332210 00101111111110 00 0135789999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEE
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~ 231 (375)
+.++++ +.. ..+|+..||+||. +|...+.. . .+..+++.+.+|....-.+-.+.
T Consensus 70 lL~a~~-~~~-------~~~pi~gIn~G~l-GFl~~~~~-----~----~~~~~l~~i~~g~~~~~~r~~l~ 123 (277)
T PRK03708 70 ILRIEH-KTK-------KDIPILGINMGTL-GFLTEVEP-----E----ETFFALSRLLEGDYFIDERIKLR 123 (277)
T ss_pred HHHHHH-hcC-------CCCeEEEEeCCCC-CccccCCH-----H----HHHHHHHHHHcCCceEEEeEEEE
Confidence 999999 653 5789999999998 88877652 1 35566777888876544443333
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.37 E-value=3.2e-06 Score=82.59 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=75.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhH-HHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLAC-LEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~-a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++++|+|| |..+..+....+.+.|.+.. +++...... ...+ .....+ ......+.|+++|||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g-~~v~v~~~~-----~~~~~~~~~~~------~~~~~~d~vi~~GGD 67 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEARG-CKVLMGPSG-----PKDNPYPVFLA------SASELIDLAIVLGGD 67 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHCC-CEEEEecCc-----hhhccccchhh------ccccCcCEEEEECCc
Confidence 46789999999 44455567778888776543 443321100 0000 011111 012357899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEEe
Q 017217 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (375)
Q Consensus 158 GTV~eVln~L~~~~~~~~~~~~plgiIPl-GTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~~ 233 (375)
||+.++++.+.. .++|+..|.+ |+-.=|+.. +.+.. . .++++.+.+|+...-.+..+.+.
T Consensus 68 GT~l~~~~~~~~-------~~~pv~gin~~G~lGFL~~~-------~~~~~-~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 68 GTVLAAARHLAP-------HDIPILSVNVGGHLGFLTHP-------RDLLQ-D-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred HHHHHHHHHhcc-------CCCCEEEEecCCcceEecCc-------hhhcc-h-HHHHHHHHcCCceEEEeeEEEEE
Confidence 999999998863 5788999998 764444421 11011 1 45677788898776666666553
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.77 E-value=0.0003 Score=68.42 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHH-h--ccchhhhccCCCcEEEEEcC
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA-E--LGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la-~--~~~~~~~~~~~~~~Ivv~GG 156 (375)
++++.+|.|+.. ....++.+++.+.|.+.+ +++..... . +..+. . ..........+.|.|++.||
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~d~vi~lGG 72 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKG-YEVIVEQQ-I--------AHELQLKNVKTGTLAEIGQQADLAIVVGG 72 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc-h--------hhhcCcccccccchhhcCCCCCEEEEECC
Confidence 667999999855 345567788888776654 23221100 0 00000 0 00000011234689999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCCCcc-chhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGN-DLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 157 DGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGN-dlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
|||+..++..+.. . .+.|+|.++|| +|...+.. +.+..+++.+.+|....-.+..+.+
T Consensus 73 DGT~L~aa~~~~~-------~--~~Pilgin~G~lGFl~~~~~---------~~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 73 DGNMLGAARVLAR-------Y--DIKVIGINRGNLGFLTDLDP---------DNALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred cHHHHHHHHHhcC-------C--CCeEEEEECCCCCcccccCH---------HHHHHHHHHHHcCCceEEEEEEEEE
Confidence 9999999987753 2 24588888888 77766652 1355567778888765555544443
No 27
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.58 E-value=0.001 Score=64.78 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++.+|+||... ...++.+++.+.|.+.. +++....... .....+....... .....+.+.|+++|||||
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~g-iev~v~~~~~--~~~~~~~~~~~~~----~~~~~~~d~vi~~GGDGt 74 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETLRRLKDFLLDRG-LEVILDEETA--EVLPGHGLQTVSR----KLLGEVCDLVIVVGGDGS 74 (295)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHCC-CEEEEecchh--hhcCcccccccch----hhcccCCCEEEEEeCcHH
Confidence 5679999998764 44577888888776543 3332211000 0000000000000 001235789999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
+..+++.+.. ..+|+--|.+|+ ||+-..++ + +.+..+++.+.+|....-.+..+++
T Consensus 75 ~l~~~~~~~~-------~~~Pvlgin~G~-------lGFl~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~ 130 (295)
T PRK01231 75 LLGAARALAR-------HNVPVLGINRGR-------LGFLTDIR--P-DELEFKLAEVLDGHYQEEERFLLEA 130 (295)
T ss_pred HHHHHHHhcC-------CCCCEEEEeCCc-------ccccccCC--H-HHHHHHHHHHHcCCceEEEEEEEEE
Confidence 9999987753 466766677764 44433222 1 3566677888888766666665554
No 28
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.57 E-value=0.00049 Score=67.34 Aligned_cols=58 Identities=34% Similarity=0.256 Sum_probs=42.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcC
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAG 220 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g 220 (375)
+.+.|+.+|||||...|++++. .++|+=-||.||-|-+.-..- .|. +.-+++..++++
T Consensus 100 gVdlIvfaGGDGTarDVa~av~--------~~vPvLGipaGvk~~SgvfA~-------~P~-~aa~l~~~~lkg 157 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAVG--------ADVPVLGIPAGVKNYSGVFAL-------SPE-DAARLLGAFLKG 157 (355)
T ss_pred CceEEEEeCCCccHHHHHhhcc--------CCCceEeeccccceecccccc-------ChH-HHHHHHHHHhcc
Confidence 4789999999999999999883 578888899999886642211 122 344566667777
No 29
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.31 E-value=0.0011 Score=64.26 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=47.2
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeE
Q 017217 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICR 224 (375)
Q Consensus 145 ~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~ 224 (375)
..+.|.|+++|||||+-.++..+.. ..+|+--|++||- .|--.+. +.+ +..+++.+.+|+...
T Consensus 74 ~~~~D~ii~lGGDGT~L~~~~~~~~-------~~~Pilgin~G~l-gfl~~~~-----~~~----~~~~l~~~~~g~~~~ 136 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGTFLRAARLFGD-------YDIPILGINTGTL-GFLTEFE-----PED----IEEALEKILAGEYSI 136 (285)
T ss_dssp CCCSSEEEEEESHHHHHHHHHHCTT-------ST-EEEEEESSSS-TSSSSEE-----GCG----HHHHHHHHHHTHCEE
T ss_pred ccCCCEEEEECCCHHHHHHHHHhcc-------CCCcEEeecCCCc-cccccCC-----HHH----HHHHHHHHhcCCeEE
Confidence 3567999999999999999987753 4788888899984 4433333 233 344455566676665
Q ss_pred eeeeEEEE
Q 017217 225 LDSWHAVI 232 (375)
Q Consensus 225 iD~w~v~~ 232 (375)
-.+..+++
T Consensus 137 ~~r~~l~~ 144 (285)
T PF01513_consen 137 EERMRLEV 144 (285)
T ss_dssp EEEEEEEE
T ss_pred EEeeeEEE
Confidence 55555544
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.10 E-value=0.0097 Score=57.79 Aligned_cols=125 Identities=15% Similarity=0.058 Sum_probs=71.4
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
..++++.+|.||.. ...++.+++...|...++ ++..... .+..+............+.|.|++.|||
T Consensus 8 ~~~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~Dlvi~iGGD 74 (287)
T PRK14077 8 KNIKKIGLVTRPNV---SLDKEILKLQKILSIYKV-EILLEKE---------SAEILDLPGYGLDELFKISDFLISLGGD 74 (287)
T ss_pred ccCCEEEEEeCCcH---HHHHHHHHHHHHHHHCCC-EEEEecc---------hhhhhcccccchhhcccCCCEEEEECCC
Confidence 44678999999963 566788888888866542 3221100 0111100000000011346899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 158 GTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
||+-.++..+.. ..+|+--|-+|+ ||+=..++ + +.++.+++.+.+|+...-.+-.+++
T Consensus 75 GT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~y~ie~r~~L~~ 132 (287)
T PRK14077 75 GTLISLCRKAAE-------YDKFVLGIHAGH-------LGFLTDIT--V-DEAEKFFQAFFQGEFEIEKPYMLSV 132 (287)
T ss_pred HHHHHHHHHhcC-------CCCcEEEEeCCC-------cccCCcCC--H-HHHHHHHHHHHcCCCeEEEEEEEEE
Confidence 999888776643 356654456666 66543322 2 3466678888888755444444443
No 31
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.07 E-value=0.0081 Score=58.45 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
.+.+.+|.|+.+ ....++.+.+.+.|.... +++..... . ....+ ...+-. .. ........+.||++|||||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g-~~v~v~~~-~--~~~~~-~~~~~~-~~-~~~~~~~~d~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRG-FEVVFEAD-T--ARNIG-LTGYPA-LT-PEEIGARADLAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc-h--hhhcC-cccccc-cC-hhHhccCCCEEEEECCcHH
Confidence 456888888865 344567788887776544 33222110 0 00000 000000 00 0001134689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
+..+++.+.. .++|+-=|.+|+ ||+-..++ + +.+...|+.+.+|....-.+..+.+
T Consensus 76 ~l~~~~~~~~-------~~~pilGIn~G~-------lGFL~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~~ 131 (291)
T PRK02155 76 MLGIGRQLAP-------YGVPLIGINHGR-------LGFITDIP--L-DDMQETLPPMLAGNYEEEERMLLEA 131 (291)
T ss_pred HHHHHHHhcC-------CCCCEEEEcCCC-------ccccccCC--H-HHHHHHHHHHHcCCceEEEeEEEEE
Confidence 9999988753 455655566665 34322222 2 3566778888889876656665554
No 32
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.90 E-value=0.015 Score=57.03 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh---cc---------chhhhcc
Q 017217 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---LG---------DFCAKDT 145 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~---~~---------~~~~~~~ 145 (375)
.+++++.+|.|+.. ....++.+.+...|...+ +++...... +..+.. .. .......
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAG-IGVRVLDAE---------AVDLGATHPAPDDFRAMEVVDADPDAA 70 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEeech---------hhhhcccccccccccccccccchhhcc
Confidence 45677999988754 345567788888776654 232221100 000000 00 0000011
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (375)
.+.|.||+.|||||+-.++..+.. ..+|+--|.+|+ ||+-..++ + +.+..+|+.+.+|....-
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~-------~~~PilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~y~i~ 133 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARA-------ADVPVLGVNLGH-------VGFLAEAE--A-EDLDEAVERVVDRDYRVE 133 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcc-------CCCcEEEEecCC-------CceeccCC--H-HHHHHHHHHHHcCCceEE
Confidence 346899999999999988877653 456776688887 45433222 1 345667788888887655
Q ss_pred eeeEEEE
Q 017217 226 DSWHAVI 232 (375)
Q Consensus 226 D~w~v~~ 232 (375)
.+-.+++
T Consensus 134 ~R~~L~~ 140 (306)
T PRK03372 134 ERMTLDV 140 (306)
T ss_pred EeeeEEE
Confidence 5544433
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.82 E-value=0.016 Score=56.58 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeeccc-c---eee-cchhHHH-HHHhccchhhhccCCCcEEE
Q 017217 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPH-E---FVQ-YGLACLE-KLAELGDFCAKDTRQKMRIV 152 (375)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~-~---~~t-~~~~~a~-~la~~~~~~~~~~~~~~~Iv 152 (375)
+++++.+|.||.. ....++.+++...|.+.+. ++...... . ... ...++.. .. . ......|.|+
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~D~vi 73 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTAHTLITFLKQHGF-TVYLDEVGIKEGCIYTQDTVGCHIVNK-T------ELGQYCDLVA 73 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHHCCC-EEEEecccccccchhccccccccccch-h------hcCcCCCEEE
Confidence 4677999999865 3455677888887766542 22211000 0 000 0000000 00 0 0112468999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 153 v~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
+.|||||+-.++..+.. ..+|+-=|-+|+ ||+-..++ + +.+...++.+.+|+...-.+..+++
T Consensus 74 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~~~~~~r~~l~~ 136 (296)
T PRK04539 74 VLGGDGTFLSVAREIAP-------RAVPIIGINQGH-------LGFLTQIP--R-EYMTDKLLPVLEGKYLAEERILIEA 136 (296)
T ss_pred EECCcHHHHHHHHHhcc-------cCCCEEEEecCC-------CeEeeccC--H-HHHHHHHHHHHcCCceEEEeeeEEE
Confidence 99999999988877653 356655566776 66544333 2 3456677788888765555555444
No 34
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.74 E-value=0.02 Score=54.92 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++.+|.|+.. ...++.+++...|.+.+ +++.. . ..+.|.|++.|||||
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g-~~~~~-------~-------------------~~~~D~vi~lGGDGT 51 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYG-FTVVD-------H-------------------PKNANIIVSIGGDGT 51 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCC-CEEEc-------C-------------------CCCccEEEEECCcHH
Confidence 346778888776 45567788888886654 22210 0 123578999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPl-GTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
+=.++..+.. ...+|+--|.+ | .||+=..++ + +.+.+.++.+.+|+...-.+..+++
T Consensus 52 ~L~a~~~~~~------~~~~pilgIn~~G-------~lGFL~~~~--~-~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 52 FLQAVRKTGF------REDCLYAGISTKD-------QLGFYCDFH--I-DDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHHHhcc------cCCCeEEeEecCC-------CCeEcccCC--H-HHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 9888776542 12455333455 5 455533322 2 3566777888888865444444443
No 35
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.72 E-value=0.031 Score=54.71 Aligned_cols=130 Identities=13% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecc-cceeecchhH-----HHHHHhccchhhhccCCCcEEEE
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFVQYGLAC-----LEKLAELGDFCAKDTRQKMRIVV 153 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p-~~~~t~~~~~-----a~~la~~~~~~~~~~~~~~~Ivv 153 (375)
++++.+|.|+.. ....++.+++...|.+.+ +++..... ...+. .... ..++.. .. ......+.|.|++
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAG-WEVVRASSSGGILG-YANPDQPVCHTGIDQ-LV-PPGFDSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchhhhcC-ccccccccccccccc-cC-hhhcccCcCEEEE
Confidence 456889999843 345667788888786654 23221100 00000 0000 000000 00 0001124689999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 154 ~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
.|||||+-.++..+.. .++|+--|-+|+ ||+=..++ + +.+...|+.+.+|+...-.+-.+++
T Consensus 75 iGGDGTlL~aar~~~~-------~~iPilGIN~G~-------lGFLt~~~--~-~~~~~~l~~l~~g~y~ie~r~~L~~ 136 (305)
T PRK02649 75 LGGDGTVLSAARQLAP-------CGIPLLTINTGH-------LGFLTEAY--L-NQLDEAIDQVLAGQYTIEERTMLTV 136 (305)
T ss_pred EeCcHHHHHHHHHhcC-------CCCcEEEEeCCC-------CcccccCC--H-HHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 9999999988877653 355654456665 55433222 2 3566778888888765444444443
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.69 E-value=0.032 Score=54.34 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh---------ccchhhhccCCCcEE
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---------LGDFCAKDTRQKMRI 151 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~---------~~~~~~~~~~~~~~I 151 (375)
+++.+|.|+.. ....++.+++.+.|.+.+. ++..... .+..+.. ..+......++.|.|
T Consensus 1 m~igii~~~~~--~~~~~~~~~i~~~l~~~g~-~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 68 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYIQELFDELEERGA-EVLIEEK---------FLDFLKQDLKFHPSYDTFSDNEELDGSADMV 68 (292)
T ss_pred CEEEEEeCCCC--HHHHHHHHHHHHHHHHCCC-EEEEecc---------hhhhhccccccccccccccchhhcccCCCEE
Confidence 35788888744 3455677888887766542 3221100 0000000 000000011346899
Q ss_pred EEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEE
Q 017217 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (375)
Q Consensus 152 vv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~ 231 (375)
++.|||||+-.++..+.. .++|+-=|-+|+ ||+=..++ + +.++++|+.+.+|+...-.+-.++
T Consensus 69 i~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~ 131 (292)
T PRK01911 69 ISIGGDGTFLRTATYVGN-------SNIPILGINTGR-------LGFLATVS--K-EEIEETIDELLNGDYTIEERSLLQ 131 (292)
T ss_pred EEECCcHHHHHHHHHhcC-------CCCCEEEEecCC-------CCcccccC--H-HHHHHHHHHHHcCCceEEEEeeEE
Confidence 999999999888876653 356655567776 56543322 2 346677888888987655555554
Q ss_pred E
Q 017217 232 I 232 (375)
Q Consensus 232 ~ 232 (375)
+
T Consensus 132 ~ 132 (292)
T PRK01911 132 L 132 (292)
T ss_pred E
Confidence 4
No 37
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.27 E-value=0.081 Score=54.90 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=43.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEee
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLD 226 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD 226 (375)
+.|.||+.|||||+=.++..+.. ..+||--|.+|+ ||+=..++ + +.+..+|+.+.+|....-.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~-------~~iPILGIN~G~-------LGFLt~i~--~-~e~~~~Le~il~G~y~Ie~ 324 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKG-------PVPPVVPFSMGS-------LGFMTPFH--S-EQYRDCLDAILKGPISITL 324 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------cceecccC--H-HHHHHHHHHHHcCCceEEE
Confidence 46899999999999998877653 445654456665 44433222 2 3566778888888765444
Q ss_pred eeEEE
Q 017217 227 SWHAV 231 (375)
Q Consensus 227 ~w~v~ 231 (375)
+-.+.
T Consensus 325 R~~L~ 329 (508)
T PLN02935 325 RHRLQ 329 (508)
T ss_pred EeEEE
Confidence 44443
No 38
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.95 E-value=0.1 Score=50.09 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017217 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (375)
Q Consensus 82 ~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~ 161 (375)
++.+|.|+ ..+..++.+++.+.|...+ +++. .++.|.|++.|||||+=
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g-~~~~----------------------------~~~~Dlvi~iGGDGT~L 49 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFG-FILD----------------------------EKNPDIVISVGGDGTLL 49 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcC-CccC----------------------------CcCCCEEEEECCcHHHH
Confidence 46777773 2345667788887776543 2210 12457999999999998
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEE
Q 017217 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (375)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v 230 (375)
.++..+... ..++|+-=|.+|+ ||+-..+. + +.+..+++.+.+|+.....+-.+
T Consensus 50 ~a~~~~~~~-----~~~iPilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~y~i~~r~~L 103 (265)
T PRK04885 50 SAFHRYENQ-----LDKVRFVGVHTGH-------LGFYTDWR--P-FEVDKLVIALAKDPGQVVSYPLL 103 (265)
T ss_pred HHHHHhccc-----CCCCeEEEEeCCC-------ceecccCC--H-HHHHHHHHHHHcCCceEEEEeeE
Confidence 888766431 1355655566665 44432221 2 24566778888887654444333
No 39
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.74 E-value=0.18 Score=48.26 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHH-HHHHHHcCCeeEe
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKR-TLQRASAGPICRL 225 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~-~l~~i~~g~~~~i 225 (375)
+.|.|++.|||||+=.++..+.. .++|+--|.+|+ ||.=..++ +. .+.. +++.+.+.+....
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~-------~~iPilGIN~G~-------lGFL~~~~--~~-~~~~~~~~~l~~~~~~~r 95 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNC-------AGCKVVGINTGH-------LGFYTSFN--ET-DLDQNFANKLDQLKFTQI 95 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcC-------CCCcEEEEecCC-------CccccccC--HH-HHHHHHHHHHhhCCeEEE
Confidence 46899999999999888766542 456766677775 66543322 22 2333 5555554444433
Q ss_pred eeeE
Q 017217 226 DSWH 229 (375)
Q Consensus 226 D~w~ 229 (375)
.+-+
T Consensus 96 ~~L~ 99 (259)
T PRK00561 96 DLLE 99 (259)
T ss_pred EEEE
Confidence 3333
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.46 E-value=0.33 Score=46.32 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (375)
.+.|.|++.|||||+-.++..+ ++|+--|.+|+ ||+-..+. + +.+.++++.+.+|+....
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~----------~~Pilgin~G~-------lGfl~~~~--~-~~~~~~l~~~~~g~~~~~ 99 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV----------GTPLVGFKAGR-------LGFLSSYT--L-EEIDRFLEDLKNWNFREE 99 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc----------CCCEEEEeCCC-------CccccccC--H-HHHHHHHHHHHcCCcEEE
Confidence 3568999999999997776543 34543355555 66543322 2 356677888888987766
Q ss_pred eeeEEEEe
Q 017217 226 DSWHAVIQ 233 (375)
Q Consensus 226 D~w~v~~~ 233 (375)
.+..+++.
T Consensus 100 ~r~~l~~~ 107 (256)
T PRK14075 100 KRWFLKIE 107 (256)
T ss_pred EeeEEEEE
Confidence 66666553
No 41
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.39 E-value=0.15 Score=54.15 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccch---hhhccCCCcEEEE
Q 017217 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDF---CAKDTRQKMRIVV 153 (375)
Q Consensus 77 ~~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~---~~~~~~~~~~Ivv 153 (375)
....+++.+|.|+.. ....++.+++...|.+.+. ++..... .+..+...... ......+.|.||+
T Consensus 287 ~~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~~-~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~dlvi~ 354 (569)
T PRK14076 287 RIKPTKFGIVSRIDN--EEAINLALKIIKYLDSKGI-PYELESF---------LYNKLKNRLNEECNLIDDIEEISHIIS 354 (569)
T ss_pred ccCCcEEEEEcCCCC--HHHHHHHHHHHHHHHHCCC-EEEEech---------hhhhhcccccccccccccccCCCEEEE
Confidence 344456888888753 3455677788877765442 2221100 01111100000 0001234689999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEE
Q 017217 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (375)
Q Consensus 154 ~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~ 231 (375)
.|||||+=.++..+.. ..+||-=|-+|+ ||+-..+. + +.+...|+.+.+|+...-.+-.+.
T Consensus 355 lGGDGT~L~aa~~~~~-------~~~PilGin~G~-------lGFL~~~~--~-~~~~~~l~~~~~g~~~i~~r~~L~ 415 (569)
T PRK14076 355 IGGDGTVLRASKLVNG-------EEIPIICINMGT-------VGFLTEFS--K-EEIFKAIDSIISGEYEIEKRTKLS 415 (569)
T ss_pred ECCcHHHHHHHHHhcC-------CCCCEEEEcCCC-------CCcCcccC--H-HHHHHHHHHHHcCCceEEEeEEEE
Confidence 9999999888876643 456666678887 55533222 2 346667788888876544443333
No 42
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.71 E-value=0.52 Score=45.43 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017217 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (375)
Q Consensus 82 ~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~ 161 (375)
++.+++|+.. ....++.+++...|. .+ +++.... ..+..+....... . ..+.|.|++.|||||+=
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~g-~~~~~~~---------~~~~~~~~~~~~~-~-~~~~D~vi~lGGDGT~L 66 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-PD-WEIIYEM---------EAAKALGMDGLDI-E-EINADVIITIGGDGTIL 66 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-cC-CEEEEec---------hhhhhcCcccCcc-c-ccCCCEEEEEcCcHHHH
Confidence 5788888754 344567777777773 33 2322110 0011110000000 0 11568999999999986
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeEEEE
Q 017217 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 162 eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD~w~v~~ 232 (375)
.++..+ . +|+--|-+|+ ||+-..++ + +.+.+.|+.+.+|+...-.+..+.+
T Consensus 67 ~a~~~~---------~-~PilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~~ 117 (271)
T PRK01185 67 RTLQRA---------K-GPILGINMGG-------LGFLTEIE--I-DEVGSAIKKLIRGEYFIDERMKLKV 117 (271)
T ss_pred HHHHHc---------C-CCEEEEECCC-------CccCcccC--H-HHHHHHHHHHHcCCcEEEEeeEEEE
Confidence 665432 1 2443346665 45433222 1 3566777888888766555555544
No 43
>PLN02727 NAD kinase
Probab=94.45 E-value=0.28 Score=54.21 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHh--cc--------chhhhccCC
Q 017217 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE--LG--------DFCAKDTRQ 147 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~--~~--------~~~~~~~~~ 147 (375)
.+.+++++|.++.. ........+...|.....+++.... . .+..+.. .. ........+
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~--------~a~~l~~~~~~~~~~~~~~~~~~el~~~ 743 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-D--------VHDIFARIPGFGFVQTFYSQDTSDLHER 743 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-c--------hHHHhhccccccccceecccchhhcccC
Confidence 45788999999876 3445556677777654223332210 0 0111100 00 000001124
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 017217 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (375)
Q Consensus 148 ~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~ 222 (375)
.|.||+.|||||+=.++..+.. ..+||--|-+|+ ||+=..+. + +.+...|+.+.+|..
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~-------~~iPILGINlGr-------LGFLTdi~--~-ee~~~~L~~Il~G~y 801 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRG-------AVPPVVSFNLGS-------LGFLTSHY--F-EDFRQDLRQVIHGNN 801 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcC-------CCCCEEEEeCCC-------ccccccCC--H-HHHHHHHHHHHcCCc
Confidence 6899999999999988877653 456766577774 66544322 2 245566777777764
No 44
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.40 E-value=0.45 Score=45.91 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc-CCeeEe
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA-GPICRL 225 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~-g~~~~i 225 (375)
+.|.|++.|||||+-.++..+.. .++|+--|.+|+ ||+-..+. +. .+...++.+.+ |+...-
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~-------~~~PilgIn~G~-------lGFL~~~~--~~-~~~~~l~~~~~~g~~~i~ 104 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK-------YDIPLIGINRGN-------LGFLTDID--PK-NAYEQLEACLERGEFFVE 104 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------CcccccCC--HH-HHHHHHHHHHhcCCceEE
Confidence 46899999999999888776643 345644457776 66543322 22 23344555555 665444
Q ss_pred eeeEEEE
Q 017217 226 DSWHAVI 232 (375)
Q Consensus 226 D~w~v~~ 232 (375)
.+..+++
T Consensus 105 ~r~~L~~ 111 (272)
T PRK02231 105 ERFLLEA 111 (272)
T ss_pred EeeeEEE
Confidence 4444433
No 45
>PLN02929 NADH kinase
Probab=93.22 E-value=0.48 Score=46.30 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=49.0
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCc---------cch--hhhhCCCCCCCCcHHHHHHHH
Q 017217 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG---------NDL--SRSFGWGGSFPFAWKSAVKRT 213 (375)
Q Consensus 145 ~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTG---------Ndl--Ar~Lg~~~~~~~~~~~al~~~ 213 (375)
..+.|.||++|||||+-.++..+ . ..+|+-=|-.|+. |.| .|++|.=..+. .+.+.+.
T Consensus 62 ~~~~Dlvi~lGGDGT~L~aa~~~-~-------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~---~~~~~~~ 130 (301)
T PLN02929 62 IRDVDLVVAVGGDGTLLQASHFL-D-------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT---AEDFEQV 130 (301)
T ss_pred cCCCCEEEEECCcHHHHHHHHHc-C-------CCCcEEEEECCCcccccccccccccccccCccccccCC---HHHHHHH
Confidence 34578999999999998887766 3 3455444566641 223 35777644322 2356778
Q ss_pred HHHHHcCCeeEeeeeEEEE
Q 017217 214 LQRASAGPICRLDSWHAVI 232 (375)
Q Consensus 214 l~~i~~g~~~~iD~w~v~~ 232 (375)
|+.+.+|....-.+-.+.+
T Consensus 131 L~~il~g~~~~~~r~~L~~ 149 (301)
T PLN02929 131 LDDVLFGRLKPTELSRIST 149 (301)
T ss_pred HHHHHcCCceEEEeeeEEE
Confidence 8888889765555444444
No 46
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=92.32 E-value=0.79 Score=44.32 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~i 225 (375)
+..+.|++.|||||+-.++..+.. ..+|+--|-+|+ ||+-..+. .+.++++++.+.+++.+..
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------~~~pilgin~G~-------lGFLt~~~---~~~~~~~~~~~~~~~~~~~ 116 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------LDIPVLGINLGH-------LGFLTDFE---PDELEKALDALLEGEYRIE 116 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------CCCCEEEEeCCC-------cccccccC---HHHHHHHHHHHhcCceEEE
Confidence 457899999999999999887764 345655555663 66655443 2467778888888877777
Q ss_pred eeeEEEEe
Q 017217 226 DSWHAVIQ 233 (375)
Q Consensus 226 D~w~v~~~ 233 (375)
.+..+++.
T Consensus 117 ~r~~l~~~ 124 (281)
T COG0061 117 ERLLLEVS 124 (281)
T ss_pred EeEEEEEE
Confidence 77776653
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.13 E-value=0.33 Score=46.10 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=27.0
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCC
Q 017217 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (375)
Q Consensus 145 ~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGT 188 (375)
..+.|.|++.|||||+-.++..+.. ..+|+-=|.+|+
T Consensus 23 ~~~~Dlvi~iGGDGTlL~a~~~~~~-------~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGFMLQTLHRYMN-------SGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHHHHHHHHHhcC-------CCCeEEEEeCCC
Confidence 3457899999999999888876543 456655566765
No 48
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=82.19 E-value=2.5 Score=42.52 Aligned_cols=67 Identities=30% Similarity=0.449 Sum_probs=45.0
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEee
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLD 226 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~~~iD 226 (375)
..|.||..||||||-.+..-+. .+.||+=-+-+|| ||+=..|+. +..++.+..+.+++....=
T Consensus 168 ~~D~iItLGGDGTvL~aS~LFq-------~~VPPV~sFslGs-------lGFLtpf~f---~~f~~~l~~v~~~~~~v~l 230 (409)
T KOG2178|consen 168 RFDLIITLGGDGTVLYASSLFQ-------RSVPPVLSFSLGS-------LGFLTPFPF---ANFQEQLARVLNGRAAVNL 230 (409)
T ss_pred ceeEEEEecCCccEEEehhhhc-------CCCCCeEEeecCC-------ccccccccH---HHHHHHHHHHhcCcceEee
Confidence 4689999999999976654333 2567877767775 676554443 4677778888888854443
Q ss_pred eeEE
Q 017217 227 SWHA 230 (375)
Q Consensus 227 ~w~v 230 (375)
+-++
T Consensus 231 R~RL 234 (409)
T KOG2178|consen 231 RMRL 234 (409)
T ss_pred eeeE
Confidence 3333
No 49
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=81.63 E-value=4.3 Score=40.65 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++|+..+..- ....+.+...|..... +.+......+ .......++++.+.+.+ ...+..+.||++|| |+
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e-~~k~~~~v~~~~~~~~~--~~~dr~~~IIAvGG-Gs 95 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGE-EHKTLSTLSDLVERALA--LGATRRSVIVALGG-GV 95 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCcEEEEECC-cH
Confidence 678888875432 2255677777765432 2221111000 01112234444433210 11334457888876 88
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPl--GTGNd 191 (375)
+..+...+.... ...+|+..||. |++.|
T Consensus 96 v~D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 96 VGNIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 888887665421 14679999998 66666
No 50
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=80.72 E-value=5.5 Score=40.60 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=38.4
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccC---CCCCCCcEEEeeCCCccchhhhhCC
Q 017217 148 KMRIVVAGGDGTVGWVLGSVGELNKQ---GREPVPPVAIIPLGTGNDLSRSFGW 198 (375)
Q Consensus 148 ~~~Ivv~GGDGTV~eVln~L~~~~~~---~~~~~~plgiIPlGTGNdlAr~Lg~ 198 (375)
...|+++|||-=++.||....+.-.. +...-..+-|||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 46899999999999999887664221 112345689999999 999999974
No 51
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=80.27 E-value=10 Score=37.49 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++|+.-+.+ ...+.+++...|...++ +......+.+ ......+.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-GS 88 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGEC----TRAEIERLAEIAR-----DNGADVVIGIGG-GK 88 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcC----CHHHHHHHHHHHh-----hcCCCEEEEecC-ch
Confidence 66777653222 22467788888876542 2222222221 1123444443321 246789999998 77
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhhh
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
+..+...+.-. ..+|+..||. |||--....
T Consensus 89 ~iD~aK~ia~~------~~~P~iaIPTTagTgse~t~~ 120 (351)
T cd08170 89 TLDTAKAVADY------LGAPVVIVPTIASTDAPTSAL 120 (351)
T ss_pred hhHHHHHHHHH------cCCCEEEeCCccccCcccccc
Confidence 77777766542 3579999996 777655543
No 52
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=79.49 E-value=9.3 Score=37.85 Aligned_cols=94 Identities=20% Similarity=0.151 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++|+..+.+ ...+.+++...|.... +...... .+ .....++++.+.+. ..+.|.||++|| |++
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~-~~~~~~~-~~---p~~~~v~~~~~~~~-----~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGE-AFVLRYD-GE---CSEENIERLAAQAK-----ENGADVIIGIGG-GKV 88 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCe-EEEEEeC-CC---CCHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 67888887766 2356677777774332 2221111 01 11234445444321 235688999987 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhhh
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
..+...+... ..+|+..||. |||-..++.
T Consensus 89 ~D~aK~ia~~------~~~p~i~VPTT~gtgse~t~~ 119 (347)
T cd08172 89 LDTAKAVADR------LGVPVITVPTLAATCAAWTPL 119 (347)
T ss_pred HHHHHHHHHH------hCCCEEEecCccccCccccee
Confidence 8888877653 3579999996 777665543
No 53
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=78.96 E-value=12 Score=37.43 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=53.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+..+.+-. ....+++...|.+..+ +.+ ....+.. ......+.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-G 90 (375)
T cd08194 24 KRPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEP----TDESVEEGVKLAK-----EGGCDVIIALGG-G 90 (375)
T ss_pred CeEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5788887655431 1255677778866442 221 1222221 1123444443321 245789999998 6
Q ss_pred HHHHHHHHHhhc---cc-------C--CCCCCCcEEEeeC--CCccchhh
Q 017217 159 TVGWVLGSVGEL---NK-------Q--GREPVPPVAIIPL--GTGNDLSR 194 (375)
Q Consensus 159 TV~eVln~L~~~---~~-------~--~~~~~~plgiIPl--GTGNdlAr 194 (375)
++..+...+.-. +. . .....+|+..||. |||--..+
T Consensus 91 S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t~ 140 (375)
T cd08194 91 SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVTR 140 (375)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 666666554310 00 0 0124579999996 67655443
No 54
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=78.00 E-value=11 Score=37.39 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
+++++|..+.+- ....+++...|....+ +. +....+.. .....+++++.+. ..+.|.||++|| |
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGES----TYENVERLKKNPA-----VQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCC----CHHHHHHHHHHHh-----hcCCCEEEEeCC-c
Confidence 677777655432 2356777888866442 21 22222221 1123344443221 245789999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhh
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPl--GTGNdlAr 194 (375)
++..+...+... ..+|+..||. |||-....
T Consensus 89 s~~D~aK~ia~~------~~~p~i~VPTt~gtgse~t~ 120 (345)
T cd08171 89 KAIDTVKVLADK------LGKPVFTFPTIASNCAAVTA 120 (345)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCccccCccccc
Confidence 888888777543 3578999996 56543333
No 55
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=77.72 E-value=12 Score=37.71 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+..+.+-... ..++++...|...++ +.+ ....|.. ....+.++++.+. ..+.|.||++||
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 93 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNP----TVDQVDEAAKLGR-----EFGAQAVIAIGG- 93 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 3678888776654322 245667777765432 221 1122221 1123344443221 235689999998
Q ss_pred hHHHHHHHHHhhcc---c----------CCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 158 GTVGWVLGSVGELN---K----------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 158 GTV~eVln~L~~~~---~----------~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
|++..+...+.-.. . ......+|+..||. |||...++.--
T Consensus 94 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~av 148 (383)
T cd08186 94 GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFAV 148 (383)
T ss_pred ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeEE
Confidence 66666665543210 0 00123578999997 88776665543
No 56
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=77.26 E-value=2.3 Score=41.85 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=47.4
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEe--eCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 017217 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAII--PLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (375)
Q Consensus 145 ~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiI--PlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~g~~ 222 (375)
+...|.|+.+|||||+-....-+.. ...|.|||= |.|+---++ ++..||.++..++. ++..|..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~------~~~PViGvNtDP~~Seg~lc----L~~~~~~n~~~al~----k~~sgnF 168 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVID------DSKPVIGVNTDPTGSEGHLC----LPDKYPSNPAGALC----KLTSGNF 168 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhc------cCCceeeecCCCCcCcceEe----ccccCCCCcHHHHH----HHHhccH
Confidence 3456899999999999877764443 245666663 566654443 44556655655654 4555766
Q ss_pred eEeeeeEEEEec
Q 017217 223 CRLDSWHAVIQM 234 (375)
Q Consensus 223 ~~iD~w~v~~~~ 234 (375)
..+-+-+|.+++
T Consensus 169 ~wv~r~rir~tv 180 (395)
T KOG4180|consen 169 EWVLRQRIRGTV 180 (395)
T ss_pred HHhhhheeEEEE
Confidence 666555555443
No 57
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=75.20 E-value=19 Score=36.02 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++|+..+.+. ..+++...|....+ +.+....+.+ ......+.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 86 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEP----SVELVDAAVAEAR-----NAGCDVVIAIGG-GS 86 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEecC-ch
Confidence 678888766553 55667777765432 2221112211 1123344433221 246789999998 66
Q ss_pred HHHHHHHHhhcc-----------cC-----CCCCCCcEEEeeC--CCccchhhhh
Q 017217 160 VGWVLGSVGELN-----------KQ-----GREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 160 V~eVln~L~~~~-----------~~-----~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
+..+...+.-.. .. .....+|+..||. |||--..+.-
T Consensus 87 ~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~~a 141 (374)
T cd08183 87 VIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTKNA 141 (374)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCCeE
Confidence 666665542210 00 0124579999996 7776655543
No 58
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=75.12 E-value=18 Score=35.97 Aligned_cols=104 Identities=15% Similarity=0.261 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+.-+.+-... ..++++...|...++ +.+ ....|.. ....+.++++.+. ..+.|.||++|| |
T Consensus 26 ~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENP----SLETIMEAVEIAK-----KFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 678888766653322 244566666655432 221 1122222 1123444443321 245689999998 6
Q ss_pred HHHHHHHHHhhcc-----------cCCCCCCCcEEEeeC--CCccchhhhh
Q 017217 159 TVGWVLGSVGELN-----------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 159 TV~eVln~L~~~~-----------~~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
++..+...+.-.. .......+|+..||. |||-..++.-
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~a 144 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYS 144 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeE
Confidence 7776666542110 001124679999996 8888777643
No 59
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=74.98 E-value=10 Score=37.64 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhh-cCe--eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGK-EQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~-~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (375)
.++++++..+.--. ...+.+...|.. ..+ +.+....+.. ....+.++.+.+.+ ....+.+.||++||
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k----~~~~v~~~~~~~~~--~~~~r~d~IIaiGG 92 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYK----TFETVTRILERAIA--LGANRRTAIVAVGG 92 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 36788887654422 355677777754 222 2121111111 12334444332210 01234678888886
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017217 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (375)
Q Consensus 157 DGTV~eVln~L~~~~~~~~~~~~plgiIPl--GTGNd 191 (375)
|++..+...+.... ...+|+-.||. ++++|
T Consensus 93 -Gsv~D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 93 -GATGDVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred -cHHHHHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 78888777665421 14678999997 44444
No 60
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=74.51 E-value=15 Score=32.27 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=46.6
Q ss_pred CCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHHHHHHHHHh
Q 017217 91 SGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTVGWVLGSVG 168 (375)
Q Consensus 91 SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GGDGTV~eVln~L~ 168 (375)
+|+..-..+.++....|...++ |++.+...+. .+..+.++.++.. ..+. -.|.++|+++-+--++.++.
T Consensus 7 ~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR----~p~~l~~~~~~~~-----~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 7 MGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHR----TPERLLEFVKEYE-----ARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp ESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTT----SHHHHHHHHHHTT-----TTTESEEEEEEESS--HHHHHHHHS
T ss_pred eCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccC----CHHHHHHHHHHhc-----cCCCEEEEEECCCcccchhhheecc
Confidence 3444445577888888888775 8877654332 3344556655432 1222 46778899999999998885
Q ss_pred hcccCCCCCCCcEEEeeCCCc
Q 017217 169 ELNKQGREPVPPVAIIPLGTG 189 (375)
Q Consensus 169 ~~~~~~~~~~~plgiIPlGTG 189 (375)
+.|.||+ |.-++
T Consensus 78 --------~~PVIgv-P~~~~ 89 (150)
T PF00731_consen 78 --------TLPVIGV-PVSSG 89 (150)
T ss_dssp --------SS-EEEE-EE-ST
T ss_pred --------CCCEEEe-ecCcc
Confidence 3455666 76543
No 61
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=73.35 E-value=12 Score=36.60 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
.++++++..+..-. .+.+++...|... .+..+....|.. ......++++.+. ..+.|.||++|| |
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 88 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNP----TFEEVKEAVERAR-----AAEVDAVIAVGG-G 88 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-c
Confidence 36788887655433 3556666666543 211111122211 1234455544321 245788888886 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC--CCc
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPl--GTG 189 (375)
++..+...+.... ...+|+..||. |||
T Consensus 89 s~~D~aK~ia~~~----~~~~p~i~iPTt~~tg 117 (332)
T cd07766 89 STLDTAKAVAALL----NRGLPIIIVPTTAATG 117 (332)
T ss_pred hHHHHHHHHHHHh----cCCCCEEEEeCCCchh
Confidence 8888887765431 13689999996 665
No 62
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=71.16 E-value=17 Score=35.75 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++|+..+..-. ..+++++...|... .+..+....+.. .....++.++.+. ..+.|.||++|| |+
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG-Gs 89 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSSIEVEIFSDVVPDP----PIEVVAKGIKKFL-----DFKPDIVIALGG-GS 89 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhcCcEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEECC-ch
Confidence 6788888653322 12456666666542 111111122221 1123334433221 235789999998 56
Q ss_pred HHHHHHHHhhcccC-CCCCCCcEEEeeC--CCccchhh
Q 017217 160 VGWVLGSVGELNKQ-GREPVPPVAIIPL--GTGNDLSR 194 (375)
Q Consensus 160 V~eVln~L~~~~~~-~~~~~~plgiIPl--GTGNdlAr 194 (375)
+..+...+.-.... ...+.+|+..||. |||--...
T Consensus 90 ~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~ 127 (332)
T cd08180 90 AIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTS 127 (332)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCC
Confidence 66666544221100 1134579999996 77754443
No 63
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=70.79 E-value=27 Score=35.37 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=62.1
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017217 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (375)
..++.+|+.-|.- ....+.+.+.+.|+..++ |.+. .+.|.+..+ ..++-++.. +..+.|.||+.||
T Consensus 28 g~~r~liVTd~~~---~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~----~v~~~~~~~-----~~~~~D~iIalGG 95 (377)
T COG1454 28 GAKRALIVTDRGL---AKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIE----TVEAGAEVA-----REFGPDTIIALGG 95 (377)
T ss_pred CCCceEEEECCcc---ccchhHHHHHHHHHhcCCeEEEecCCCCCCCHH----HHHHHHHHH-----HhcCCCEEEEeCC
Confidence 4577888877652 223477888888888762 3322 234433222 223222211 1246789999998
Q ss_pred chHHHHHHHHHhhcccC------------CCCCCCcEEEeeC--CCccchhhhhCC
Q 017217 157 DGTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (375)
Q Consensus 157 DGTV~eVln~L~~~~~~------------~~~~~~plgiIPl--GTGNdlAr~Lg~ 198 (375)
|++..++.++.-.... ...+.+|+-.||. |||-...+.--+
T Consensus 96 -GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVi 150 (377)
T COG1454 96 -GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVI 150 (377)
T ss_pred -ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEE
Confidence 6666665554322110 0234489999995 999888877665
No 64
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=69.07 E-value=24 Score=35.46 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+.-+.+.... .+++++...|....+ + .+....|..- .....+.++.+. ..+.|.||++|| |
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG-G 96 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPR----LETVREGIELCK-----EEKVDFILAVGG-G 96 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-h
Confidence 678787665554322 355677777765432 2 1222222211 122333332211 246789999998 6
Q ss_pred HHHHHHHHHhhcc------------cCCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 159 TVGWVLGSVGELN------------KQGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 159 TV~eVln~L~~~~------------~~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
++..+...+.-.. .......+|+-.||. |||-...+.--
T Consensus 97 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~av 149 (382)
T cd08187 97 SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGAV 149 (382)
T ss_pred HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCEE
Confidence 6766665542210 000124579999996 77765555443
No 65
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=68.99 E-value=14 Score=36.62 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
.++++|+..+..-. .+.+++.+.|..... +.+....+.+ .......+.++.+.+.+ ....+.+.||++|| |
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e-~~~~~~~v~~~~~~~~~--~~~~r~d~IIaiGG-G 95 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGE-ASKSLETLEKLYDALLE--AGLDRKSLIIALGG-G 95 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CcCCHHHHHHHHHHHHH--cCCCCCCeEEEECC-h
Confidence 36788888765542 356777777765431 2221111111 01112334444433210 11234578888887 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
++..+...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 8888877665321 14678999996
No 66
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=68.54 E-value=30 Score=34.66 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+.-+.+-.. ..+++++...|....+ +. +..+.|..- ....++.++.+ + ..+.|.||++|| |
T Consensus 26 ~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p~----~~~v~~~~~~~----~-~~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNPT----TTTVMEGAALA----R-EEGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCCC----HHHHHHHHHHH----H-HcCCCEEEEeCC-c
Confidence 67888887665211 2466777777765442 22 122222221 12334443322 1 245789999998 5
Q ss_pred HHHHHHHHHhhcc---c--------------CCCCCCCcEEEeeC--CCccchhhhhCC
Q 017217 159 TVGWVLGSVGELN---K--------------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (375)
Q Consensus 159 TV~eVln~L~~~~---~--------------~~~~~~~plgiIPl--GTGNdlAr~Lg~ 198 (375)
++..+...+.-.. . ....+.+|+..||. |||--..+.--+
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi 152 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVI 152 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEE
Confidence 6666665543210 0 00124579999995 887766665443
No 67
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=68.43 E-value=31 Score=34.52 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+..+..-. ...++++...|...++ +. +....|..- ....++.++.+. ..+.|.||++||
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPT----IENVEAGLALYR-----ENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788887654321 1245667777765432 22 112222211 122333333221 245689999998
Q ss_pred hHHHHHHHHHhhccc-------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 158 GTVGWVLGSVGELNK-------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 158 GTV~eVln~L~~~~~-------------~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
|++..+...+.-... ....+.+|+..||. |||-...+.-
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~a 146 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIAA 146 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCeE
Confidence 566665554422100 00123478999996 7876555543
No 68
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=68.11 E-value=47 Score=32.72 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
.++++|+..+... ..+.+++...|.....+.+. ..|.. ....+.++.+.+. ..+.+.||++|| |+
T Consensus 25 ~~~~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~-~~~~~----~~~~v~~~~~~~~-----~~~~d~iIaiGG-Gs 89 (339)
T cd08173 25 GGRVLVVTGPTTK----SIAGKKVEALLEDEGEVDVV-IVEDA----TYEEVEKVESSAR-----DIGADFVIGVGG-GR 89 (339)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCeEEE-EeCCC----CHHHHHHHHHHhh-----hcCCCEEEEeCC-ch
Confidence 3678888866543 24667777777654322221 22221 1234455544331 135688898887 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLG 187 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlG 187 (375)
+..+...+.-. ..+|+..||.=
T Consensus 90 ~~D~aK~~a~~------~~~p~i~iPTT 111 (339)
T cd08173 90 VIDVAKVAAYK------LGIPFISVPTA 111 (339)
T ss_pred HHHHHHHHHHh------cCCCEEEecCc
Confidence 88888777532 46899999963
No 69
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=67.86 E-value=37 Score=33.75 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++|+..+.... ..+.+++...|....++.+....|..- ....++.++.+. ....+.|.||++|| |++
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~pt----~~~v~~~~~~~~---~~~~~~D~IIaiGG-GSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNPD----VAQLDGLYARLW---GDEGACDLVIALGG-GSV 92 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCcC----HHHHHHHHHHHH---hcCCCCCEEEEeCC-ccH
Confidence 6788887654321 235666777775432222222222221 123344433221 11123789999998 666
Q ss_pred HHHHHHHhhc---cc-------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 161 GWVLGSVGEL---NK-------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 161 ~eVln~L~~~---~~-------------~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
..+...+.-. .. ....+.+|+..||. |||-...+.-
T Consensus 93 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~a 146 (355)
T TIGR03405 93 IDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPWA 146 (355)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCeE
Confidence 6666554221 00 00124579999996 8877666553
No 70
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=67.65 E-value=17 Score=36.24 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE---eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL---SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl---~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (375)
.++++++..+... ..+.+++.+.|..... +.+ ....+.. ....+.++.+.+.+ ....+.+.||++|
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~----~~~~v~~~~~~~~~--~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYK----SLETLEKIYDALLE--AGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 4678888865542 2366778888865432 221 1111111 12234444332210 0123458888888
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017217 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (375)
Q Consensus 156 GDGTV~eVln~L~~~~~~~~~~~~plgiIPl--GTGNd 191 (375)
| |++..++..+.... ...+|+..||. ++.+|
T Consensus 101 G-Gsv~D~aK~iA~~~----~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 101 G-GVIGDLAGFAAATY----MRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEcCchhhhccc
Confidence 7 78888887765321 24678999997 44444
No 71
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=67.41 E-value=42 Score=33.52 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++++||.-+.. ...+.+++...|...++ +.+....+.+. ....+++++.+. ..+.|.||++|| |+
T Consensus 30 ~~~livtd~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~ep~----~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 95 (366)
T PRK09423 30 KRALVIADEFV----LGIVGDRVEASLKEAGLTVVFEVFNGECS----DNEIDRLVAIAE-----ENGCDVVIGIGG-GK 95 (366)
T ss_pred CEEEEEEChhH----HHHHHHHHHHHHHhCCCeEEEEEeCCCCC----HHHHHHHHHHHH-----hcCCCEEEEecC-hH
Confidence 67777765443 22366788888876542 21112222221 123444443321 235689999998 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhhh
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
+..+...+.-. ..+|+..||. |||-.....
T Consensus 96 v~D~aK~iA~~------~~~p~i~IPTtagtgSe~t~~ 127 (366)
T PRK09423 96 TLDTAKAVADY------LGVPVVIVPTIASTDAPTSAL 127 (366)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccCc
Confidence 88887776542 3578999996 666544443
No 72
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=67.17 E-value=29 Score=34.74 Aligned_cols=104 Identities=13% Similarity=0.265 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+..+..-. ...++++...|....+ +.+. ...|.. .....+++++.+. ..+.|.||++|| |
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNP----TITNVKDGLAVFK-----KEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5677776544322 1356677777765432 2221 122211 1123444443221 245789999998 6
Q ss_pred HHHHHHHHHhhc---c---------cCCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 159 TVGWVLGSVGEL---N---------KQGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 159 TV~eVln~L~~~---~---------~~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
++..+...+.-. + .......+|+..||. |||-...+.--
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 666666554211 0 000124679999996 88876655543
No 73
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=67.01 E-value=28 Score=34.84 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+.-+.+-.. ..+.+++...|.+.++ +. +....|.. .....++.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~~--~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 91 (375)
T cd08179 24 KKAFIVTGGGSMKK--FGFLDKVEAYLKEAGIEVEVFEGVEPDP----SVETVLKGAEAMR-----EFEPDWIIALGG-G 91 (375)
T ss_pred CeEEEEeCchHHHh--CChHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 56777764433221 2355677777765432 21 11122221 1123344433221 235689999998 5
Q ss_pred HHHHHHHHHhh---ccc------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 159 TVGWVLGSVGE---LNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 159 TV~eVln~L~~---~~~------------~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
++..+...+.- .+. ......+|+..||. |||--....-
T Consensus 92 SviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~a 146 (375)
T cd08179 92 SPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAFS 146 (375)
T ss_pred cHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCeE
Confidence 55555554421 100 00023468999996 7876555443
No 74
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=66.45 E-value=18 Score=35.99 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+.+-. ....+.+...|...+. +. +....+.. ......++++.+. ..+.|.||++||
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNP----TLSNVDAAVAAYR-----EEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788887765543 1355666667755432 22 11111111 1233444444321 235688999988
Q ss_pred hHHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 158 GTV~eVln~L~~~~~------------~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
|++..+...+..... ....+.+|+..||. |||--..+..
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~a 142 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFA 142 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeE
Confidence 666666655432110 00123679999997 7775444443
No 75
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=66.04 E-value=36 Score=33.95 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+..+..-. ....+++.+.|.+.+. +. +....|.. ......+.++.+. ..+.|.||++|| |
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 91 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNP----TEAAVEAGLAAYR-----AGGCDGVIAFGG-G 91 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5677776544321 1245677777765432 21 11122221 1123344443221 245789999998 6
Q ss_pred HHHHHHHHHhhccc----------------CCCCCCCcEEEeeC--CCccchhhh
Q 017217 159 TVGWVLGSVGELNK----------------QGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 159 TV~eVln~L~~~~~----------------~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
++..+...+.-... ....+.+|+..||. |||-...+.
T Consensus 92 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~ 146 (370)
T cd08192 92 SALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGRA 146 (370)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCCc
Confidence 77766655532210 00123478999996 666544433
No 76
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=65.76 E-value=34 Score=34.44 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+..+.... ...++++...|.+..+ +. +....|..- + ....+.++.+ + ..+.|.||++|| |
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~-~---~~v~~~~~~~----~-~~~~D~IIaiGG-G 89 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLP-R---SELCDAASAA----A-RAGPDVIIGLGG-G 89 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcC-H---HHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6788887654432 2456677777765432 21 111111110 0 1122222211 1 245689999998 6
Q ss_pred HHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhhh
Q 017217 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 159 TV~eVln~L~~~~~------------~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
++..+...+.-... ....+.+|+..||. |||-...+.
T Consensus 90 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 90 SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 77776665532110 01123679999995 787666654
No 77
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=65.36 E-value=17 Score=36.12 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 82 ~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
+++||..+ +-.. ..+.+++...|.+..+ + .+....+.. ....++++++.+. ..+.|.||++|| |+
T Consensus 23 r~lvVt~~-~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 23 RVLVVTDP-SLSK--SGLVDRVLDALEEAGIEVQVFDGVGPNP----TLEDVDEAAEQAR-----KFGADCIIAIGG-GS 89 (366)
T ss_dssp EEEEEEEH-HHHH--HTHHHHHHHHHHHTTCEEEEEEEESSS-----BHHHHHHHHHHHH-----HTTSSEEEEEES-HH
T ss_pred CEEEEECc-hHHh--CccHHHHHHHHhhCceEEEEEecCCCCC----cHHHHHHHHHHHH-----hcCCCEEEEcCC-CC
Confidence 88888877 3322 2377888888855442 2 222122221 1233444444321 236789999998 45
Q ss_pred HHHHHHHHhhcccC-------------CCCCCCcEEEeeC--CCccchhhhhCC
Q 017217 160 VGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (375)
Q Consensus 160 V~eVln~L~~~~~~-------------~~~~~~plgiIPl--GTGNdlAr~Lg~ 198 (375)
+-.+...+.-.... ...+.+|+..||. |||-.+.+...+
T Consensus 90 ~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi 143 (366)
T PF00465_consen 90 VMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVI 143 (366)
T ss_dssp HHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEE
T ss_pred cCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccc
Confidence 54554444221110 0123479999996 777677665544
No 78
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=63.85 E-value=39 Score=33.93 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+..-. ..+.+++...|....+ +.+. ...|.. .....++.++.+. ..+.|.||++||
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNP----TITVVKAGVAAFK-----ASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36778877653221 1256677777765442 2221 122221 1123333333221 235689999998
Q ss_pred hHHHHHHHHHhhc---c---------c--CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 158 GTVGWVLGSVGEL---N---------K--QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 158 GTV~eVln~L~~~---~---------~--~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
|++..+...+.-. . . ......+|+..||. |||-...+..
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 5666666443211 0 0 00124578999996 7776555544
No 79
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=63.05 E-value=38 Score=33.56 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++.+|+..+.+- ....+++...|....+ +++....+.. ......++++.+. ..+.|.||++|| |+
T Consensus 23 ~~~liv~~~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVL----KKSRPRFEAALAKSIIVVDVIVFGGEC----STEEVVKALCGAE-----EQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHH----HHHHHHHHHHHHhcCCeeEEEEcCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-cH
Confidence 567777655443 2355777777766442 2222211111 1123444443321 235688998987 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhh
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPl--GTGNdlAr 194 (375)
+..+...+... ...|+..||. |||-....
T Consensus 89 ~~D~aK~ia~~------~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 89 TLDTAKAVADR------LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 88888777542 3579999996 67654443
No 80
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=62.85 E-value=34 Score=33.71 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++|+..+. -.....+++.+.|.......+....+..- .....++++... ..+.|.||++|| |++
T Consensus 24 ~~~livt~~~----~~~~~~~~v~~~l~~~~~~~~~~~~~~p~----~~~v~~~~~~~~-----~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 24 SRALVLTTPS----LATKLAERVASALGDRVAGTFDGAVMHTP----VEVTEAAVAAAR-----EAGADGIVAIGG-GST 89 (337)
T ss_pred CeEEEEcChH----HHHHHHHHHHHHhccCCcEEeCCCCCCCC----HHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 5677775432 22236677888886543211112222111 122334333211 245688998887 888
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeC-CCccc
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGND 191 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIPl-GTGNd 191 (375)
..+...+.-. ..+|+..||. -||..
T Consensus 90 iD~aK~ia~~------~~~p~i~IPTtatgse 115 (337)
T cd08177 90 IDLAKAIALR------TGLPIIAIPTTLSGSE 115 (337)
T ss_pred HHHHHHHHHH------hcCCEEEEcCCchhhh
Confidence 8888877542 3578999995 35443
No 81
>PRK15138 aldehyde reductase; Provisional
Probab=62.12 E-value=41 Score=33.98 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++|+.-+.+= +...+++++...|....+..+..+.|..- ....++.++.+. ..+.|.||++|| |++
T Consensus 30 ~~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG-GS~ 97 (387)
T PRK15138 30 ARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPT----YETLMKAVKLVR-----EEKITFLLAVGG-GSV 97 (387)
T ss_pred CeEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCC----HHHHHHHHHHHH-----HcCCCEEEEeCC-hHH
Confidence 567776543331 11235566777775322222222233221 123344433221 246789999998 444
Q ss_pred HHHHHHHhhc---c------------cCCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 161 GWVLGSVGEL---N------------KQGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 161 ~eVln~L~~~---~------------~~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
-.+...+.-. . .....+.+|+..||. |||-.....--
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~av 151 (387)
T PRK15138 98 LDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGAV 151 (387)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCEE
Confidence 4444433210 0 001123578999996 88876655443
No 82
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=61.81 E-value=25 Score=34.76 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (375)
++++++..+..- ....+++.+.|..... +. +....+.. ....++++.+.+.+ ....+.+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~----~~~~v~~~~~~~~~--~~~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESK----SLETVQRLYDQLLE--AGLDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCCEEEEEcC
Confidence 678888765442 2356777777765432 22 11111111 12334444433210 01234578888887
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 157 DGTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
|++..+...+.... ...+|+..||.
T Consensus 91 -Gsv~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHHH----ccCCCEEEecC
Confidence 77777777665321 14678999997
No 83
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=61.18 E-value=51 Score=33.41 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhh---ccc
Q 017217 98 ELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGE---LNK 172 (375)
Q Consensus 98 ~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eVln~L~~---~~~ 172 (375)
.+.+++...|.+.++ +.+. ...|.+. ....++.++.+. ..+.|.||++||= ++-.+...+.- .++
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P~----~~~v~~~~~~~r-----~~~~D~IiavGGG-S~iD~AKaia~~~~~~~ 133 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEPC----ITDVCAAVAQLR-----ESGCDGVIAFGGG-SVLDAAKAVALLVTNPD 133 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCcC----HHHHHHHHHHHH-----hcCcCEEEEeCCh-HHHHHHHHHHHHHhCCC
Confidence 356778888876553 2221 1222221 122344433221 3467899999984 44444433311 100
Q ss_pred ---------CCCCCCCcEEEeeC--CCccchhhhhCC
Q 017217 173 ---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (375)
Q Consensus 173 ---------~~~~~~~plgiIPl--GTGNdlAr~Lg~ 198 (375)
....+.+|+..||. |||-...+.--+
T Consensus 134 ~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi 170 (395)
T PRK15454 134 STLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVI 170 (395)
T ss_pred ccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEE
Confidence 00124578999996 887776665443
No 84
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=60.88 E-value=1.8 Score=37.96 Aligned_cols=14 Identities=50% Similarity=0.798 Sum_probs=11.4
Q ss_pred EEEcCchHHHHHHH
Q 017217 152 VVAGGDGTVGWVLG 165 (375)
Q Consensus 152 vv~GGDGTV~eVln 165 (375)
=-.|||||+||+-+
T Consensus 129 RgdGGDGT~hW~Yd 142 (180)
T PLN00180 129 RGDGGDGTGHWVYE 142 (180)
T ss_pred cccCCCCceeeEee
Confidence 34699999999964
No 85
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=60.55 E-value=51 Score=33.14 Aligned_cols=105 Identities=13% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEe-eecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+..-. ..+.+++...|.+..+ +.+. ...|.+- .....+.++.+. ..+.|.||++||
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 96 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPT----IEVVKEGVEVFK-----ASGADYLIAIGG- 96 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788877653221 1256677777765432 2211 1222211 122333333211 235689999988
Q ss_pred hHHHHHHHHHhh---ccc-----------CCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 158 GTVGWVLGSVGE---LNK-----------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 158 GTV~eVln~L~~---~~~-----------~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
|++..+...+.- ... ......+|+..||. |||--..+..-
T Consensus 97 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~av 152 (382)
T PRK10624 97 GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYV 152 (382)
T ss_pred hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceee
Confidence 666666654321 000 00124579999996 77766665544
No 86
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=60.36 E-value=4.3 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=28.9
Q ss_pred heehhhhcCcce-eEecccccccccchhhhhhHH
Q 017217 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (375)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (375)
+++..+..|..+ |||..|..|+-.++.+||...
T Consensus 65 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 65 FIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp HHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred hhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 446677888888 999999999999999999885
No 87
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=59.28 E-value=72 Score=31.26 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.1
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
+.+.||++|| |++..+...+... ..+|+..||.
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~------~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFL------RGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhh------cCCCEEEecC
Confidence 5688898887 8888888877652 5689999996
No 88
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=59.08 E-value=59 Score=32.75 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+.. +...+++++...|....+ + .+..+.|.+- ....++.++.+. ..+.|.||++||
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~----~~~v~~~~~~~~-----~~~~D~IiaiGG- 97 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPT----TENVAAGLKLLK-----ENNCDSVISLGG- 97 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 356776654311 112356678888876543 2 1222333221 123344433221 246789999998
Q ss_pred hHHHHHHHHHhh---ccc---------CCCCCCCcEEEeeC--CCccchhhhhCC
Q 017217 158 GTVGWVLGSVGE---LNK---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (375)
Q Consensus 158 GTV~eVln~L~~---~~~---------~~~~~~~plgiIPl--GTGNdlAr~Lg~ 198 (375)
|++-.+...+.- ... ......+|+..||. |||-...+.--+
T Consensus 98 GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 98 GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 444444444321 100 01124679999996 888777666544
No 89
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=55.44 E-value=48 Score=31.55 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++++.-+. ..+..-++++..|...+ |++...... ..+-....+.++.+... ..+.+.||++|| ||+
T Consensus 20 ~~~lvv~d~~----t~~~~g~~v~~~l~~~g-~~v~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~d~ii~vGg-G~i 87 (250)
T PF13685_consen 20 KKVLVVTDEN----TYKAAGEKVEESLKSAG-IEVAVIEEF-VGDADEDEVEKLVEALR-----PKDADLIIGVGG-GTI 87 (250)
T ss_dssp SEEEEEEETT----HHHHHHHHHHHHHHTTT--EEEEEE-E-E---BHHHHHHHHTTS-------TT--EEEEEES-HHH
T ss_pred CcEEEEEcCC----HHHHHHHHHHHHHHHcC-CeEEEEecC-CCCCCHHHHHHHHHHhc-----ccCCCEEEEeCC-cHH
Confidence 5777776554 33445567777786543 343321100 00111233444444321 235678888887 999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCccc
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIPlGTGNd 191 (375)
+.+..-.... .+.|+-.+|.=-.||
T Consensus 88 ~D~~K~~A~~------~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 88 IDIAKYAAFE------LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHHHH------HT--EEEEES--SSG
T ss_pred HHHHHHHHHh------cCCCEEEeccccccc
Confidence 9999877653 578999999754444
No 90
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=54.60 E-value=59 Score=32.86 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+..- ...+++++...|....+ +.+ ....|..- ....++.++.+. ..+.|.||++||
T Consensus 21 ~~k~liVtd~~~~---~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 87 (398)
T cd08178 21 KKRAFIVTDRFMV---KLGYVDKVIDVLKRRGVETEVFSDVEPDPS----LETVRKGLELMN-----SFKPDTIIALGG- 87 (398)
T ss_pred CCeEEEEcChhHH---hCccHHHHHHHHHHCCCeEEEecCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 3677777543211 11256677777765532 221 12222221 123344433221 245789999998
Q ss_pred hHHHHHHHHHhhc---cc----------C----------CCCCCCcEEEeeC--CCccchhhhh
Q 017217 158 GTVGWVLGSVGEL---NK----------Q----------GREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 158 GTV~eVln~L~~~---~~----------~----------~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
|++..+...+.-. .. . .....+|+..||. |||-...+..
T Consensus 88 GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~a 151 (398)
T cd08178 88 GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFA 151 (398)
T ss_pred ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeE
Confidence 5555555544310 00 0 0014579999996 8876654443
No 91
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=53.92 E-value=34 Score=35.56 Aligned_cols=51 Identities=33% Similarity=0.416 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh---hhhCC
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA---r~Lg~ 198 (375)
.+-+.++++|||||..-+..--....+ ....+++--||-==-||+. +++|.
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~--~g~~I~VIGIPKTIDNDI~~td~S~GF 228 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRR--RKLNISVVGIPKTIDNDIPIIDESFGF 228 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCCCcccCcCc
Confidence 356799999999999755432111111 1245888899988889987 55665
No 92
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=53.47 E-value=32 Score=34.06 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr 194 (375)
.+-+.++++|||||+.-+ +.|.+ ..+++--||.==-||+.-
T Consensus 93 ~~Id~LivIGGdgS~~~a-~~L~~-------~gi~vigiPkTIDNDl~g 133 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIA-RRLAD-------KGLPVVGVPKTIDNDLEA 133 (324)
T ss_pred cCCCEEEEECCchHHHHH-HHHHh-------cCCCEEeeccccCCCCcC
Confidence 456899999999999654 44543 348888899888999973
No 93
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=52.08 E-value=68 Score=31.95 Aligned_cols=50 Identities=30% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc---cc---------CCCCCCCcEEEeeC--CCccchhhhhC
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGEL---NK---------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~---~~---------~~~~~~~plgiIPl--GTGNdlAr~Lg 197 (375)
+.|.||++|| |++-.+...+.-. .. ....+.+|+..||. |||--..+.--
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~aV 144 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTAV 144 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcEE
Confidence 5789999998 5555555444211 00 00123468999996 88776655443
No 94
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=51.66 E-value=96 Score=27.47 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHHHHHHHHHhhcccCC
Q 017217 97 PELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTVGWVLGSVGELNKQG 174 (375)
Q Consensus 97 ~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GGDGTV~eVln~L~~~~~~~ 174 (375)
....++....|...++ ||+.+...+. .+....++++++. ..+. -.|.++|+.+-+--++.++.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHR----tp~~~~~~~~~a~-----~~g~~viIa~AG~aa~Lpgvva~~t------ 75 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHR----TPELMLEYAKEAE-----ERGIKVIIAGAGGAAHLPGMVAALT------ 75 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECccc----CHHHHHHHHHHHH-----HCCCeEEEEeCCccchhHHHHHhcc------
Confidence 3466777778877665 8888765432 3556777776542 1222 35666789998888887764
Q ss_pred CCCCCcEEEeeCCCc
Q 017217 175 REPVPPVAIIPLGTG 189 (375)
Q Consensus 175 ~~~~~plgiIPlGTG 189 (375)
..|+--+|.-++
T Consensus 76 ---~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 ---PLPVIGVPVPSK 87 (156)
T ss_pred ---CCCEEEecCCcc
Confidence 345555566543
No 95
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=51.34 E-value=6.7 Score=32.94 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=27.9
Q ss_pred heehhhhcCcce-eEecccccccccchhhhhhHH
Q 017217 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (375)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (375)
.++..+..|..+ |||..|..|+..++.+||...
T Consensus 70 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 70 FIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 345667788888 999999999999999998864
No 96
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.23 E-value=1e+02 Score=30.83 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+..-. ....+++...|....+ +.+ ....+.+ ......+.++.+ + ..+.|.||++||
T Consensus 28 ~~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG- 94 (377)
T cd08188 28 AKKVLLVSDPGVIK---AGWVDRVIESLEEAGLEYVVFSDVSPNP----RDEEVMAGAELY----L-ENGCDVIIAVGG- 94 (377)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 35777776543211 1245667777765432 221 1122211 112233333221 1 245789999998
Q ss_pred hHHHHHHHHHh---hcc-------c--CCCCCCCcEEEeeC--CCccchhh
Q 017217 158 GTVGWVLGSVG---ELN-------K--QGREPVPPVAIIPL--GTGNDLSR 194 (375)
Q Consensus 158 GTV~eVln~L~---~~~-------~--~~~~~~~plgiIPl--GTGNdlAr 194 (375)
|++-.+...+. ... . ....+.+|+..||. |||--.++
T Consensus 95 GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 95 GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 56666664331 110 0 00123578999996 88866655
No 97
>PRK06756 flavodoxin; Provisional
Probab=50.81 E-value=82 Score=26.75 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcC
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQ 111 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~ 111 (375)
+++++||+=.. .|..+++.+.+.+.|...+
T Consensus 1 mmkv~IiY~S~--tGnTe~vA~~ia~~l~~~g 30 (148)
T PRK06756 1 MSKLVMIFASM--SGNTEEMADHIAGVIRETE 30 (148)
T ss_pred CceEEEEEECC--CchHHHHHHHHHHHHhhcC
Confidence 35788888554 4556688888888886543
No 98
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=49.70 E-value=68 Score=31.56 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEee--ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE--VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~--~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
++++||..+..-. ...+++...|...+. +.+.. ..+.. ....++++++.+ + .+.+.||++||
T Consensus 25 ~kvlivtd~~~~~----~~~~~i~~~L~~~~~~~~i~~~~~~~~p----~~~~v~~~~~~~----~--~~~d~IIaiGG- 89 (332)
T cd08549 25 SKIMIVCGNNTYK----VAGKEIIERLESNNFTKEVLERDSLLIP----DEYELGEVLIKL----D--KDTEFLLGIGS- 89 (332)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCC----CHHHHHHHHHHh----h--cCCCEEEEECC-
Confidence 6788888765532 223667777765432 22211 11110 123344554432 1 26788999998
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 158 GTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
|++..+...+.-. ..+|+-.||.
T Consensus 90 Gsv~D~aK~iA~~------~gip~I~VPT 112 (332)
T cd08549 90 GTIIDLVKFVSFK------VGKPFISVPT 112 (332)
T ss_pred cHHHHHHHHHHHH------cCCCEEEeCC
Confidence 7888888776532 4678999996
No 99
>PRK10586 putative oxidoreductase; Provisional
Probab=48.43 E-value=1.2e+02 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCcc
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGN 190 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPl--GTGN 190 (375)
+.|.||++|| |++..+...+... ..+|+..||. |||.
T Consensus 86 ~~d~iiavGG-Gs~iD~aK~~a~~------~~~p~i~vPT~a~t~s 124 (362)
T PRK10586 86 DRQVVIGVGG-GALLDTAKALARR------LGLPFVAIPTIAATCA 124 (362)
T ss_pred CCCEEEEecC-cHHHHHHHHHHhh------cCCCEEEEeCCccccc
Confidence 4588888887 6777777777542 4689999997 5543
No 100
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=48.38 E-value=1.1e+02 Score=30.91 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEeeecccceeecch-hHHHHHHhccchhhhccCCCcEEEEE
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v----~dl~~~~p~~~~t~~~-~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (375)
.++++||..+.--.- ...+.+.+...|..... |+....-+.....+-. ....++.+...+ ...++.+.||++
T Consensus 42 ~~r~liVtD~~v~~~-~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~--~~~dr~d~IIai 118 (389)
T PRK06203 42 PKKVLVVIDSGVLRA-HPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR--HGIDRHSYVLAI 118 (389)
T ss_pred CCeEEEEECchHHHh-hhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH--cCCCCCceEEEe
Confidence 467888887654321 12356778888865432 2211110000001111 223333332210 113445688888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 155 GGDGTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
|| |++..+...+.... ...+|+-.||.
T Consensus 119 GG-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 119 GG-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred CC-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 87 78887776664321 14578999995
No 101
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=48.09 E-value=1.5e+02 Score=29.89 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---Eeeecccceeecc-hhHHHHHHhccchhhhccCCCcEEEEE
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYG-LACLEKLAELGDFCAKDTRQKMRIVVA 154 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~-~~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (375)
.++++|+.++.-.. ....+.+.+...|....+ +. ....-|....... .....++.+...+ ...++.+.||+.
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~--~~~~r~~~IIal 106 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR--HGIDRHSYVIAI 106 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH--cCCCcCcEEEEE
Confidence 46788998876543 112355777777765431 22 1111111111111 1223333332210 113455688888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 155 GGDGTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
|| |++..++..+.... ...+|+-.||.
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPT 133 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPT 133 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECC
Confidence 87 88888887775431 24688888995
No 102
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=48.00 E-value=7.7 Score=34.79 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=29.5
Q ss_pred hheehhhhcCcce-eEecccccccccchhhhhhHH
Q 017217 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (375)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (375)
..++...+-|..+ |||-.|-+|+-.++.+||...
T Consensus 96 ~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 96 DFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 3456778888888 999999999999999999875
No 103
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=47.29 E-value=1e+02 Score=31.36 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+..-. ...++++...|...++ +.+ ....|..- .....+.++.+. ..+.|.||++||
T Consensus 23 ~~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p~----~~~v~~~~~~~~-----~~~~D~IIaiGG- 89 (414)
T cd08190 23 ARRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEPT----DESFKDAIAFAK-----KGQFDAFVAVGG- 89 (414)
T ss_pred CCeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36777776543221 2245667777765442 222 12222221 122333333221 245689999998
Q ss_pred hHHHHHHHHHh---hcc------------c---CCCCCCCcEEEeeC--CCccchhhhh
Q 017217 158 GTVGWVLGSVG---ELN------------K---QGREPVPPVAIIPL--GTGNDLSRSF 196 (375)
Q Consensus 158 GTV~eVln~L~---~~~------------~---~~~~~~~plgiIPl--GTGNdlAr~L 196 (375)
|++..+...+. ... . ......+|+..||. |||-...+.-
T Consensus 90 GSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~a 148 (414)
T cd08190 90 GSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGVA 148 (414)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccce
Confidence 55555543331 100 0 00113468999996 7776555443
No 104
>PLN02564 6-phosphofructokinase
Probab=46.72 E-value=43 Score=35.07 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhh-cccCCCCCCCcEEEeeCCCccchh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~-~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
.+-+.++++|||||+.-+.. |.+ ..+ ...++++--||-==-||+.
T Consensus 175 ~~Id~LivIGGDGS~~gA~~-L~e~~~~--~g~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASV-IYEEIRR--RGLKVAVAGIPKTIDNDIP 220 (484)
T ss_pred hCCCEEEEECCchHHHHHHH-HHHHHHH--cCCCceEEEecccccCCCc
Confidence 35679999999999975533 222 111 1234567778887789987
No 105
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=46.50 E-value=61 Score=32.39 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~-~~Ivv~GGD 157 (375)
.++++||..+..-. ...+++.+.|..... +........+ .......++++.+.+.+ ...... +.||++||
T Consensus 26 ~~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e-~~~s~~~v~~~~~~l~~--~~~~r~~d~IVaiGG- 97 (354)
T cd08199 26 SGRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGE-AAKTMDTVLKIVDALDA--FGISRRREPVLAIGG- 97 (354)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCCCEEEEECC-
Confidence 46788888665421 244667777754432 2211111101 01122334444432210 112234 78888876
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 158 GTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
|++..++..+.... ...+|+-.||.
T Consensus 98 G~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 78888877775321 14678888887
No 106
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=45.52 E-value=48 Score=34.35 Aligned_cols=51 Identities=31% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh---hhhCC
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA---r~Lg~ 198 (375)
.+-+.++++|||||+.-+.. |.+.-. .....+++--||-==-||+. +++|.
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~-l~ee~~-~~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASA-IAEEIE-RRGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred cCCCEEEEeCCchHHHHHHH-HHHHHH-HhCCCceEEEeccccCCCCcCcccCCCH
Confidence 35679999999999975543 322100 01245788888988889987 34554
No 107
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=44.11 E-value=66 Score=31.52 Aligned_cols=42 Identities=29% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr 194 (375)
.+-+.++++|||||+.-+. .|.+. ..+++--||.=--||+.-
T Consensus 90 ~~Id~Li~IGGdgs~~~a~-~L~e~------~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQ-KLYEE------GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred cCCCEEEEeCCchHHHHHH-HHHHh------hCCCEEeecccccCCCcC
Confidence 4568999999999987553 34331 357888899999999984
No 108
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=43.79 E-value=1.7e+02 Score=29.01 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcc----------------cCCCCCCCcEEEeeC--CCccchhhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELN----------------KQGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~----------------~~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
.+.|.||++|| |++..+...+.... .......+|+..||. |||--.+..
T Consensus 76 ~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~ 142 (367)
T cd08182 76 FGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPF 142 (367)
T ss_pred cCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCCE
Confidence 35688999987 67766665553210 000124679999996 666544433
No 109
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=41.72 E-value=73 Score=31.44 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEee-ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~-~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDG 158 (375)
++++|+.-+.+ .....+++...|....+ +.+.. ..+.... ......++++.+ + .+.|.||++|| |
T Consensus 24 ~~~livtd~~~----~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~p--t~~~v~~~~~~~----~--~~~d~IIaIGG-G 90 (348)
T cd08175 24 KKALIVADENT----YAAAGKKVEALLKRAGVVVLLIVLPAGDLIA--DEKAVGRVLKEL----E--RDTDLIIAVGS-G 90 (348)
T ss_pred CcEEEEECCcH----HHHHHHHHHHHHHHCCCeeEEeecCCCcccC--CHHHHHHHHHHh----h--ccCCEEEEECC-c
Confidence 56777765433 22234677777765542 22211 1111001 123344554432 1 16789999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 159 TV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
++..+...+.-. ..+|+-.||.
T Consensus 91 s~~D~aK~vA~~------~~~p~i~IPT 112 (348)
T cd08175 91 TINDITKYVSYK------TGIPYISVPT 112 (348)
T ss_pred HHHHHHHHHHHh------cCCCEEEecC
Confidence 787888777542 4679999996
No 110
>PLN02834 3-dehydroquinate synthase
Probab=41.61 E-value=70 Score=32.94 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v----~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (375)
.++++||.++... ....+.+...|..... |+......+. ......++++++.+.+ ...++.+.||++|
T Consensus 100 g~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~--~ksl~~v~~~~~~l~~--~~~dr~~~VIAiG 171 (433)
T PLN02834 100 GKRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEK--YKDMETLMKVFDKALE--SRLDRRCTFVALG 171 (433)
T ss_pred CCEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcC--CCCHHHHHHHHHHHHh--cCCCcCcEEEEEC
Confidence 3678888866543 2356777777865432 2221111111 1112333443332210 1123456788887
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017217 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (375)
Q Consensus 156 GDGTV~eVln~L~~~~~~~~~~~~plgiIPlG 187 (375)
| |++..+...+.... ...+|+-.||.-
T Consensus 172 G-Gsv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 172 G-GVIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred C-hHHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 7 78888877553221 246789999983
No 111
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=41.45 E-value=13 Score=31.96 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.5
Q ss_pred cEEEEEcCchHHH
Q 017217 149 MRIVVAGGDGTVG 161 (375)
Q Consensus 149 ~~Ivv~GGDGTV~ 161 (375)
.|+|+||||||-+
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 5999999999753
No 112
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=40.80 E-value=1.2e+02 Score=30.08 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
+++++|..+.+-. ...+.+...|.....+... ..|.. ....+.++++.+. ..+.+.||++|| |++
T Consensus 35 ~~~livtd~~~~~----~~~~~l~~~l~~~~~~~~~-~~~~~----t~~~v~~~~~~~~-----~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKK----IAGDRVEENLEDAGDVEVV-IVDEA----TMEEVEKVEEKAK-----DVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHH----HHHHHHHHHHHhcCCeeEE-eCCCC----CHHHHHHHHHHhh-----ccCCCEEEEeCC-chH
Confidence 5788888776642 2345666666543211111 22211 1233444444321 124688888887 788
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
..+...+.-. ..+|+-.||.
T Consensus 100 ~D~ak~vA~~------rgip~I~IPT 119 (350)
T PRK00843 100 IDVAKLAAYR------LGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHh------cCCCEEEeCC
Confidence 8888776532 4678999995
No 113
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=38.20 E-value=15 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=26.4
Q ss_pred eehhhhcCcce-eEecccccccccchhhhhhHH
Q 017217 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (375)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (375)
++..+..|..+ |||.-|..|+..++.+||...
T Consensus 74 i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 74 IDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred HHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 44555667788 999999999999999998864
No 114
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=37.12 E-value=1.9e+02 Score=28.80 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGD 157 (375)
.++++|+.-+.-- .....+++...|.+..+ +. +....+.. ......+.++.+. ..+.|.||++||
T Consensus 26 ~~~~livt~~~~~---~~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGIL---KAGLIDPLLASLEAAGIEVTVFDDVEADP----PEAVVEAAVEAAR-----AAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 3567776543211 11245667777765432 22 11122211 1223444444321 245789999998
Q ss_pred hHHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhhh
Q 017217 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (375)
Q Consensus 158 GTV~eVln~L~~~~~------------~~~~~~~plgiIPl--GTGNdlAr~ 195 (375)
|++..+...+.-... ......+|+..||. |||-.....
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~~ 144 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTPI 144 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCCe
Confidence 677666655532110 00124578999996 676554443
No 115
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=36.22 E-value=34 Score=29.79 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=19.0
Q ss_pred ccCCccEEEE--eCCCCceEEEEeCCc
Q 017217 346 VNCSEWEQVA--VPKRWSSNIWCEGNS 370 (375)
Q Consensus 346 v~~~~~~~i~--i~~~~~~iv~ldges 370 (375)
+...+.+.+. |..+.+..+++|||.
T Consensus 134 v~~~~~~~v~i~i~~~~~~~~q~DGE~ 160 (160)
T smart00045 134 RRIAQCSEVRITIKTSKTIPMQVDGEP 160 (160)
T ss_pred ceeecCceEEEEEecCCceeeecCCCC
Confidence 4445667776 777888899999994
No 116
>PRK14071 6-phosphofructokinase; Provisional
Probab=36.08 E-value=92 Score=31.30 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh---hhCC
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR---SFGW 198 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr---~Lg~ 198 (375)
.+-+.++++|||||+. .+..|.+. ..+++--||-==-||+.- ++|.
T Consensus 106 ~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~td~t~Gf 154 (360)
T PRK14071 106 LGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGATEVSIGF 154 (360)
T ss_pred cCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCcccCcCh
Confidence 4568999999999986 34455431 267888899877899864 4554
No 117
>PRK09267 flavodoxin FldA; Validated
Probab=35.61 E-value=2.7e+02 Score=24.08 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhh
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGK 109 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~ 109 (375)
++++||+-..+| ..+++.+.|.+.|..
T Consensus 2 mki~IiY~S~tG--nT~~vA~~Ia~~l~~ 28 (169)
T PRK09267 2 AKIGIFFGSDTG--NTEDIAKMIQKKLGK 28 (169)
T ss_pred CeEEEEEECCCC--hHHHHHHHHHHHhCC
Confidence 578888865555 556788888888854
No 118
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=35.39 E-value=1.8e+02 Score=28.69 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr 194 (375)
.+-+.++++|||||+.-+. .|.+ ..+++--||-==-||+.-
T Consensus 91 ~~Id~Li~IGGdgs~~~a~-~L~e-------~~i~vigiPkTIDNDi~g 131 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAM-RLTE-------HGFPCVGLPGTIDNDIPG 131 (317)
T ss_pred cCCCEEEEECCchHHHHHH-HHHH-------cCCCEEEecccccCCCCC
Confidence 4568999999999997654 4543 358899999988999883
No 119
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=35.31 E-value=1.8e+02 Score=27.42 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCc----hHHHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCC
Q 017217 146 RQKMRIVVAGGD----GTVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGW 198 (375)
Q Consensus 146 ~~~~~Ivv~GGD----GTV~eVln~L~~~~~~~~~~~~plgiIPl-GTGNdlAr~Lg~ 198 (375)
.+.+.+++..|| ||..+++..|.+. ....++=+||. -+....|-.+|+
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~~-----~~~~~veivPGIss~~a~aa~~g~ 143 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQEL-----YPQVAIQTIPGVCSPLAAAAALGI 143 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHhc-----CCCCCEEEECChhHHHHHHHHhCC
Confidence 345789999999 4555555555431 24578888996 556666666666
No 120
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=35.05 E-value=20 Score=31.79 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred hheehhhhcCcce-eEecccccccccchhhhhhHH
Q 017217 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (375)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (375)
-.+|+.-.-|..+ |||--||.|+-.+...||...
T Consensus 100 eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 100 EFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred HHHHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 3567888899999 999999999999999999864
No 121
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=34.33 E-value=1.8e+02 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPl 186 (375)
.+.+.||++|| |++..++..+.... ...+|+-.+|.
T Consensus 268 ~r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 268 TRSDAIVGLGG-GAATDLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred CCCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEEEeCC
Confidence 35778888887 88888887776421 14678888887
No 122
>PRK14072 6-phosphofructokinase; Provisional
Probab=33.35 E-value=1e+02 Score=31.61 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRS 195 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~ 195 (375)
.+-+.++++|||||+.-+. .|.+.-.. ....+++--||-===||+.-+
T Consensus 102 ~~Id~LivIGGdgS~~~a~-~L~e~~~~-~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTAL-KVSQLAKK-MGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred cCCCEEEEECChHHHHHHH-HHHHHHHH-hCCCceEEEeeecccCCCCCC
Confidence 3568999999999997553 33321000 123478888897778999843
No 123
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=33.27 E-value=2.4e+02 Score=28.13 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV 160 (375)
++++++..+.-. .-..+.+.+.|.....+.+....+.. ....+.++.+.+.+ ....+.+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~~~~~~~~~~e~~k----~l~~v~~~~~~~~~--~~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDAAPVIAIDATEENK----SLEAVSSVIESLRQ--NGARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcCCeEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC-hHH
Confidence 678888877542 12556676666432222222222221 12334444332210 11234578888877 777
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEee
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIP 185 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIP 185 (375)
..++..+..... ...|+-.||
T Consensus 89 ~D~ak~vA~~~~----rgi~~i~iP 109 (346)
T cd08196 89 QDVTTFVASIYM----RGVSWSFVP 109 (346)
T ss_pred HHHHHHHHHHHH----cCCCeEEec
Confidence 777766643211 234555555
No 124
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.84 E-value=1.1e+02 Score=26.76 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=37.1
Q ss_pred EEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017217 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (375)
Q Consensus 150 ~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~ 219 (375)
.-+.++|+- ..+++..+... ...++-+-+|=+|| ||+.+... +....+.+.++++.+..
T Consensus 44 ~n~g~~G~t-~~~~~~~l~~~----~~~~pd~Vii~~G~-ND~~~~~~-----~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKTGAT-SADLLRQLAPL----PETRFDVAVISIGV-NDVTHLTS-----IARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecCCcC-HHHHHHHHHhc----ccCCCCEEEEEecc-cCcCCCCC-----HHHHHHHHHHHHHHHHh
Confidence 456778884 45666666541 13467788899997 88865322 22345567777777654
No 125
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=32.41 E-value=2e+02 Score=28.58 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhc-ccCCCCCCCcEEEeeCCCccchh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~-~~~~~~~~~plgiIPlGTGNdlA 193 (375)
.+-+.++++|||||+.-+. .|.+. .+ ....+++--||-=--||+.
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~-~L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 91 HGIDALVVIGGDGSYTGAD-LLTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred hCCCEEEEeCCHHHHHHHH-HHHHHHHh--cCCCccEEEeeecccCCCc
Confidence 4568999999999997553 23221 11 1356889999976689987
No 126
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=31.67 E-value=3.4e+02 Score=27.39 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEE--eeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017217 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDL--SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (375)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl--~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~G 155 (375)
....+++++.|+.=. .-..+++...|..... +. ....+.+ ......+..++-.... .....+.+.||+.|
T Consensus 31 ~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g~-~v~~~~lp~GE-~~Ksl~~~~~i~~~ll--~~~~~R~s~iialG 102 (360)
T COG0337 31 LAGRKVAIVTDETVA----PLYLEKLLATLEAAGV-EVDSIVLPDGE-EYKSLETLEKIYDALL--EAGLDRKSTLIALG 102 (360)
T ss_pred ccCCeEEEEECchhH----HHHHHHHHHHHHhcCC-eeeEEEeCCCc-ccccHHHHHHHHHHHH--HcCCCCCcEEEEEC
Confidence 344588999988533 2346777777766542 22 2222222 2222334444433221 12245667888888
Q ss_pred CchHHHHHHHHHh
Q 017217 156 GDGTVGWVLGSVG 168 (375)
Q Consensus 156 GDGTV~eVln~L~ 168 (375)
| |+|..++.-..
T Consensus 103 G-GvigDlaGF~A 114 (360)
T COG0337 103 G-GVIGDLAGFAA 114 (360)
T ss_pred C-hHHHHHHHHHH
Confidence 7 88887765443
No 127
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=31.67 E-value=1.8e+02 Score=32.36 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
.+-+.++++|||||..-+. .|.+.........+|+-.||.==-||+.
T Consensus 477 ~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred cCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 3568999999999997554 3433111111246899999999899987
No 128
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=31.27 E-value=62 Score=29.08 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=28.3
Q ss_pred hHHHHHHhccchhhhccCCCcEEEEEcC-chHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017217 129 ACLEKLAELGDFCAKDTRQKMRIVVAGG-DGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (375)
Q Consensus 129 ~~a~~la~~~~~~~~~~~~~~~Ivv~GG-DGTV~eVln~L~~~~~~~~~~~~plgiIPlG 187 (375)
..+++|.+.. ......+|-.|| .|....+.++..+. ....+||+|-.
T Consensus 19 ~~A~~lG~~l------a~~g~~lV~GGg~~GlM~a~a~ga~~~------gG~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYL------AGQGWGLVYGGGRVGLMGAIADAAMEN------GGTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHH------HHCCCEEEECCChHhHHHHHHHHHHhc------CCeEEEecchh
Confidence 4455555532 123345555556 67777787777653 44579999854
No 129
>PRK03202 6-phosphofructokinase; Provisional
Probab=31.15 E-value=2.1e+02 Score=28.19 Aligned_cols=41 Identities=29% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr 194 (375)
.+-+.++++|||||+.-+. .|.+ ..+++--||-==-||+.-
T Consensus 92 ~~Id~Li~IGGd~s~~~a~-~L~e-------~~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAK-RLTE-------HGIPVIGLPGTIDNDIAG 132 (320)
T ss_pred cCCCEEEEeCChHHHHHHH-HHHh-------cCCcEEEecccccCCCCC
Confidence 4568999999999997654 3543 367888899888899883
No 130
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=30.51 E-value=2.9e+02 Score=31.08 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhh--hcCe-eE-EeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEE
Q 017217 79 PEAPMVVFINSRSGGRHGPELKERLQELMG--KEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (375)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~~~~~l~~~L~--~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~ 154 (375)
..++++|+..+..-. ..+.+++...|. ...+ +. +....|..- ....+++++.+. ..+.|.||++
T Consensus 479 ~~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~----~~~v~~~~~~~~-----~~~~D~IIai 546 (862)
T PRK13805 479 GKKRAFIVTDRFMVE---LGYVDKVTDVLKKRENGVEYEVFSEVEPDPT----LSTVRKGAELMR-----SFKPDTIIAL 546 (862)
T ss_pred CCCEEEEEECcchhh---cchHHHHHHHHhcccCCCeEEEeCCCCCCcC----HHHHHHHHHHHH-----hcCCCEEEEe
Confidence 346777877543321 125677777776 3322 11 112222221 123444443221 2356899999
Q ss_pred cCchHHHHHHHHH
Q 017217 155 GGDGTVGWVLGSV 167 (375)
Q Consensus 155 GGDGTV~eVln~L 167 (375)
|| |++..+...+
T Consensus 547 GG-GSviD~AK~i 558 (862)
T PRK13805 547 GG-GSPMDAAKIM 558 (862)
T ss_pred CC-chHHHHHHHH
Confidence 88 6666666554
No 131
>PRK00536 speE spermidine synthase; Provisional
Probab=29.72 E-value=39 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=13.6
Q ss_pred CCcEEEEEcCc-hHHHHHHH
Q 017217 147 QKMRIVVAGGD-GTVGWVLG 165 (375)
Q Consensus 147 ~~~~Ivv~GGD-GTV~eVln 165 (375)
...++|+.||| ||+.||+.
T Consensus 73 pk~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CCeEEEEcCCchHHHHHHHC
Confidence 34567777899 67778863
No 132
>PLN02884 6-phosphofructokinase
Probab=29.07 E-value=1.1e+02 Score=31.48 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
.+-+.++++|||||+.-+. .|.+.-. .....+++--||-==-||+.
T Consensus 142 ~~Id~LivIGGdgS~~~a~-~L~~~~~-~~g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGAN-AIHNECR-KRKMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred cCCCEEEEECCchHHHHHH-HHHHHHH-HcCCCceEEeccccccCCCc
Confidence 4568999999999997543 2322100 01234788888988889986
No 133
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=27.41 E-value=1.5e+02 Score=29.59 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017217 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (375)
Q Consensus 80 ~~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GG 156 (375)
.+++++.+---|=++ .-+++++...|...+++++.-+.|.+.++. ...+-++++ .++.+-|+++||
T Consensus 29 ~~kVLi~YGGGSIKr--nGvydqV~~~Lkg~~~~E~~GVEPNP~~~T-v~kaV~i~k--------ee~idflLAVGG 94 (384)
T COG1979 29 DAKVLIVYGGGSIKK--NGVYDQVVEALKGIEVIEFGGVEPNPRLET-LMKAVEICK--------EENIDFLLAVGG 94 (384)
T ss_pred cCeEEEEecCccccc--cchHHHHHHHhcCceEEEecCCCCCchHHH-HHHHHHHHH--------HcCceEEEEecC
Confidence 378888884333222 237889999998767788887777665432 223444444 246788999998
No 134
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=25.33 E-value=34 Score=27.42 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=24.6
Q ss_pred ceecccCCCchhhhhhhhheeEe-ccc--cCCccEEEEeCCCCc------------------eEEEEeCCcccCC
Q 017217 321 WFLTPCISDPNLRGLKNILRMHV-KKV--NCSEWEQVAVPKRWS------------------SNIWCEGNSCFES 374 (375)
Q Consensus 321 ~~~ap~~~~~~~~~l~~~~~l~~-~~v--~~~~~~~i~i~~~~~------------------~iv~ldges~~~~ 374 (375)
..||+|+..|+.+....-++--+ +|. ..+..+-|.|....+ =+|.+|||..+||
T Consensus 7 ~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 7 VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecC
Confidence 37999999875544333222211 111 223344555544333 2788888887776
No 135
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=24.83 E-value=3.6e+02 Score=27.23 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEee-ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017217 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (375)
Q Consensus 81 ~~llviiNP~SG~~~g~~~~~~l~~~L~~~~v~dl~~-~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGT 159 (375)
++.+|+.-+ .-.....+++...|...+. .... ..+. -...+.+.+++.+. ..+.+.|+.+|| |+
T Consensus 31 ~~~lvv~g~----~~~~~~~~~~~~~l~~~g~-~~~~~~~~~----a~~~ev~~~~~~~~-----~~~~d~vIGVGG-Gk 95 (360)
T COG0371 31 SRALVVTGE----NTYAIAGEKVEKSLKDEGL-VVHVVFVGE----ASEEEVERLAAEAG-----EDGADVVIGVGG-GK 95 (360)
T ss_pred CceEEEECh----hHHHHHHHHHHHHhcccCc-ceeeeecCc----cCHHHHHHHHHHhc-----ccCCCEEEEecC-cH
Confidence 556666433 3233445677777766532 1111 1111 01234455554321 145688888888 77
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhh
Q 017217 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRS 195 (375)
Q Consensus 160 V~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~ 195 (375)
+-.+...+... ...|+-++|.=..+|=.-+
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecCccccccccC
Confidence 77787777653 6789999998666664333
No 136
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.67 E-value=34 Score=32.45 Aligned_cols=30 Identities=7% Similarity=-0.172 Sum_probs=25.5
Q ss_pred ehhhhcCcce-eEecccccccccchhhhhhH
Q 017217 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (375)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~ 47 (375)
+..++.|..+ |||.-|.+|+-++++.||..
T Consensus 164 ~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 164 NNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4555667778 99999999999999999985
No 137
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=23.31 E-value=1.7e+02 Score=32.38 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
+-+.++++|||||..-+.. |.+.........+|+-.||.==-||+.
T Consensus 478 ~Id~LivIGGdgs~~~a~~-L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 478 KIDGLLIIGGFEAFEALLQ-LEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred CCCEEEEeCChHHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 4679999999999975542 222111111246889999998899997
No 138
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=22.90 E-value=3.1e+02 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017217 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 146 ~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
.+-+.++++|||||..-+. .|.+.-.. ....+++--||-==-||+.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~-~L~~~~~~-~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAA-DLAAYLAE-NGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred cCCCEEEEECChhHHHHHH-HHHHHHHH-hCCCceEEEeeeeeeCCCC
Confidence 4568999999999997553 33221000 0136888999988889986
No 139
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.76 E-value=1.2e+02 Score=25.95 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=33.3
Q ss_pred EEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017217 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (375)
Q Consensus 151 Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlAr~Lg~~~~~~~~~~~al~~~l~~i~~ 219 (375)
-...+||. ..+++..+...- ...++.+.+|=+|| ||+.+... +....+.+.++++.+.+
T Consensus 27 N~Gi~G~~-~~~~~~~~~~~~---~~~~p~~vvi~~G~-ND~~~~~~-----~~~~~~~~~~lv~~i~~ 85 (171)
T cd04502 27 NRGFGGST-LADCLHYFDRLV---LPYQPRRVVLYAGD-NDLASGRT-----PEEVLRDFRELVNRIRA 85 (171)
T ss_pred ecCcccch-HHHHHHHHHhhh---ccCCCCEEEEEEec-CcccCCCC-----HHHHHHHHHHHHHHHHH
Confidence 34567885 445554443321 12467789999998 88754221 22344566666666643
No 140
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=22.09 E-value=4.2e+02 Score=25.14 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCeeEEeeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCC
Q 017217 100 KERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVP 179 (375)
Q Consensus 100 ~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~ 179 (375)
.+.+...+.......++...|... .. ..++++.+. ....|.|++.|-||.-.+-+..+.+.-+ ....+
T Consensus 4 ~~~l~~~~~~~~~~H~tliDP~k~-~~----~~ei~~~~~-----~~GTDaImIGGS~gvt~~~~~~~v~~ik--~~~~l 71 (240)
T COG1646 4 EKYLLEKLDWRGKRHLTLIDPDKT-EE----ADEIAEAAA-----EAGTDAIMIGGSDGVTEENVDNVVEAIK--ERTDL 71 (240)
T ss_pred HHHHHHHhhhccceEEEEeCcccc-cc----cHHHHHHHH-----HcCCCEEEECCcccccHHHHHHHHHHHH--hhcCC
Confidence 345555554434455666666542 11 233333221 2457899999999987655555543211 13788
Q ss_pred cEEEeeCCCccchhh
Q 017217 180 PVAIIPLGTGNDLSR 194 (375)
Q Consensus 180 plgiIPlGTGNdlAr 194 (375)
|+-+.|.... .+++
T Consensus 72 PvilfP~~~~-~is~ 85 (240)
T COG1646 72 PVILFPGSPS-GISP 85 (240)
T ss_pred CEEEecCChh-ccCc
Confidence 9999886553 3444
No 141
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.60 E-value=5.4e+02 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhhh
Q 017217 83 MVVFINSRSGGRHGPELKERLQELMGK 109 (375)
Q Consensus 83 llviiNP~SG~~~g~~~~~~l~~~L~~ 109 (375)
++||+= |..|..+++.+.|...|..
T Consensus 2 i~IiY~--S~tGnTe~vA~~Ia~~l~~ 26 (167)
T TIGR01752 2 IGIFYG--TDTGNTEGIAEKIQKELGE 26 (167)
T ss_pred EEEEEE--CCCChHHHHHHHHHHHhCC
Confidence 556663 4555667888899888864
No 142
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=21.03 E-value=1.1e+02 Score=26.88 Aligned_cols=27 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred EEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEee
Q 017217 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIP 185 (375)
Q Consensus 151 Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIP 185 (375)
|++-||=||+.|+...+. .+.|+.+++
T Consensus 96 IvlpGG~GTL~E~~~a~~--------~~kpv~~l~ 122 (159)
T TIGR00725 96 VSVGGGYGTAIEILGAYA--------LGGPVVVLR 122 (159)
T ss_pred EEcCCchhHHHHHHHHHH--------cCCCEEEEE
No 143
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=20.99 E-value=1.5e+02 Score=31.67 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017217 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (375)
Q Consensus 147 ~~~~Ivv~GGDGTV~eVln~L~~~~~~~~~~~~plgiIPlGTGNdlA 193 (375)
+-+.+|++|||||..-+. .|.+.-. .....+++--||-==-||+.
T Consensus 164 ~Id~LviIGGd~S~~~A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~ 208 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAA-ILAEYFA-KHGCKTQVIGVPKTIDGDLK 208 (555)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-HhCCCccEEEEeeeecCCCC
Confidence 457899999999987554 2332100 01246788888987789997
No 144
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=20.34 E-value=3.1e+02 Score=29.34 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=53.3
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEeeecccceeecchhHHHHHHhccchhhhccCC-CcEEEEEcCchHH
Q 017217 83 MVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAGGDGTV 160 (375)
Q Consensus 83 llviiNP~SG~~~g~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~~~~~~~-~~~Ivv~GGDGTV 160 (375)
+.||. |+..-..+.+.....|...++ |++.+...+. .+..+.++++++. ..+ .-.|.++|+.+.+
T Consensus 413 v~i~~----gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr----~~~~~~~~~~~~~-----~~~~~v~i~~ag~~~~l 479 (577)
T PLN02948 413 VGIIM----GSDSDLPTMKDAAEILDSFGVPYEVTIVSAHR----TPERMFSYARSAH-----SRGLQVIIAGAGGAAHL 479 (577)
T ss_pred EEEEE----CchhhHHHHHHHHHHHHHcCCCeEEEEECCcc----CHHHHHHHHHHHH-----HCCCCEEEEEcCccccc
Confidence 55554 333334567778888887776 8877765432 3556677766542 122 2467778999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCc
Q 017217 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (375)
Q Consensus 161 ~eVln~L~~~~~~~~~~~~plgiIPlGTG 189 (375)
--|+.++. ..|+-=+|..+|
T Consensus 480 ~~~~a~~t---------~~pvi~vp~~~~ 499 (577)
T PLN02948 480 PGMVASMT---------PLPVIGVPVKTS 499 (577)
T ss_pred hHHHhhcc---------CCCEEEcCCCCC
Confidence 98887764 345555576554
Done!