BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017218
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
G++ L + A++NFSN+N LG GGFG VYKG+L +G VAVK
Sbjct: 23 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL 70
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
G++ L + A++NF N+N LG GGFG VYKG+L +G VAVK
Sbjct: 15 GQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRL 62
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 328 EMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPNGKEVAVK 372
E + + L + ATNNF ++ +G G FG VYKG L +G +VA+K
Sbjct: 25 ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 328 EMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPNGKEVAVK 372
E + + L + ATNNF ++ +G G FG VYKG L +G +VA+K
Sbjct: 25 ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 330 HYIGLTTILAATNNFSNE------NKLGEGGFGPVYKGKLPNGKEVAVKSF 374
H + TNNF NK+GEGGFG VYKG + N VAVK
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKL 62
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 330 HYIGLTTILAATNNFSNE------NKLGEGGFGPVYKGKLPNGKEVAVKSF 374
H + TNNF NK+GEGGFG VYKG + N VAVK
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKL 62
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 330 HYIGLTTILAATNNFSNE------NKLGEGGFGPVYKGKLPNGKEVAVKSF 374
H + TNNF NK+GEGGFG VYKG + N VAVK
Sbjct: 7 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKL 56
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 329 MHYIGLTTILAATNNFSNE------NKLGEGGFGPVYKGKLPNGKEVAVKSF 374
H + TNNF NK GEGGFG VYKG + N VAVK
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKL 53
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 340 ATNNFSNENKLGEGGFGPVYKGKLPNGKE-VAVKSF 374
A N E ++G+GGFG V+KG+L K VA+KS
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSL 52
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 340 ATNNFSNENKLGEGGFGPVYKGKLPNGKE-VAVKSF 374
A N E ++G+GGFG V+KG+L K VA+KS
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSL 52
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 340 ATNNFSNENKLGEGGFGPVYKGKLPNGKE-VAVKSF 374
A N E ++G+GGFG V+KG+L K VA+KS
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSL 52
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 323 GEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
G SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GSPSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 49
>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
Length = 108
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 186 GYALLQCTRDINSSSCRSCLATLTNESQNCCQIRRGWRILSPSCSLRYEEYGF 238
Y C + I+ S C +CL+ L N + C G R+ C ++YE+ F
Sbjct: 56 AYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 313 LMEGGILVTEGEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
L++ LV SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 21 LLQERELVEPLTPSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 79
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 162 LVDSVPRTDLMFDTKDGIVDNVQRGYALLQCTRDINSSSCRSCLATLTNESQNCCQIRRG 221
+V+ V +T + +DN A +Q +D + C + + C + G
Sbjct: 208 IVNDVAKTYPDVELAHMYIDN-----ATMQLIKDPSQFDVLLCSNLFGDILSDECAMITG 262
Query: 222 WRILSPSCSLRYEEYGFYEQPSAPAPQSTPDGGGKN 257
+ PS SL + +G YE PA S PD GKN
Sbjct: 263 SMGMLPSASLNEQGFGLYE----PAGGSAPDIAGKN 294
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 323 GEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
G SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GIRSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 52
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 188 ALLQCTRDINSSSCRSCLATLTNESQNCCQIRRGWRILSPSCSLRYEEYGFYEQPSAPAP 247
A +Q +D + C + + C + G + PS SL + +G YE PA
Sbjct: 229 ATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE----PAG 284
Query: 248 QSTPDGGGKN 257
S PD GKN
Sbjct: 285 GSAPDIAGKN 294
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 323 GEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
G SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GIRSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 52
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 2 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 47
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 2 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 47
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 46
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 2 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 47
>pdb|1B1U|A Chain A, Crystal Structure Of The Bifunctional Inhibitor Ragi
Length = 122
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 81 CRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDEC 118
CR VST TC + ATQ+++ RC AI Y C
Sbjct: 20 CRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRC 57
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 2 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 47
>pdb|1BIP|A Chain A, Bifunctional Proteinase Inhibitor TrypsinA-Amylase From
Seeds Of Ragi (Eleusine Coracana Gaertneri)
Length = 122
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 81 CRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDEC 118
CR VST TC + ATQ+++ RC AI Y C
Sbjct: 20 CRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRC 57
>pdb|1TMQ|B Chain B, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
Length = 117
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 81 CRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDEC 118
CR VST TC + ATQ+++ RC AI Y C
Sbjct: 20 CRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRC 57
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 2 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 47
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 46
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 6 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 51
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 326 SGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
SGE L IL T F LG G FG VYKG +P G++V +
Sbjct: 25 SGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 70
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 309 NRPELMEGGIL---VTEGEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGKLPN 365
+RP + EG L + + SG + L + +G+G FG V++GK
Sbjct: 6 DRPFISEGTTLKDLIYDMTTSGSGSGLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-R 64
Query: 366 GKEVAVKSF 374
G+EVAVK F
Sbjct: 65 GEEVAVKIF 73
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
+ +G+G FG V++GK G+EVAVK F
Sbjct: 9 QESIGKGRFGEVWRGKW-RGEEVAVKIF 35
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
+ +G+G FG V++GK G+EVAVK F
Sbjct: 8 QESIGKGRFGEVWRGKW-RGEEVAVKIF 34
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
+ +G+G FG V++GK G+EVAVK F
Sbjct: 34 QESIGKGRFGEVWRGKW-RGEEVAVKIF 60
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
+ +G+G FG V++GK G+EVAVK F
Sbjct: 14 QESIGKGRFGEVWRGKW-RGEEVAVKIF 40
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 347 ENKLGEGGFGPVYKGKLPNGKEVAVKSF 374
+ +G+G FG V++GK G+EVAVK F
Sbjct: 11 QESIGKGRFGEVWRGKW-RGEEVAVKIF 37
>pdb|2JBL|C Chain C, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3T6E|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
Length = 356
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 74 GIYSLYLCRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDECMLRYSNMNFFG 129
++L + D + C C N T + + + +RAI W+ M+R NMN+
Sbjct: 248 ATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLNMNYLA 303
>pdb|1PRC|C Chain C, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|C Chain C, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|3D38|C Chain C, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture.
pdb|2WJM|C Chain C, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|C Chain C, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|3G7F|C Chain C, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
pdb|2X5U|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
pdb|4AC5|C Chain C, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 336
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 74 GIYSLYLCRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDECMLRYSNMNFFG 129
++L + D + C C N T + + + +RAI W+ M+R NMN+
Sbjct: 228 ATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLNMNYLA 283
>pdb|1VRN|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
Length = 332
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 74 GIYSLYLCRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDECMLRYSNMNFFG 129
++L + D + C C N T + + + +RAI W+ M+R NMN+
Sbjct: 228 ATFALMMSISDSLGTNCTFCHNAQTFESWGKKSTPQRAIAWWGIRMVRDLNMNYLA 283
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 332 IGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
+ L IL T F LG G FG VYKG +P G++V +
Sbjct: 3 MALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 42
>pdb|3T6D|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-08
Length = 356
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 74 GIYSLYLCRGDVSTSTCRICVNNATQQLRQRCPSDKRAIIWYDECMLRYSNMNFFGREQT 133
++L + D + C C N + + + + +RAI W+ M+R NMN+ T
Sbjct: 248 ATFALMMSISDSLGTNCTFCHNAQSFETWGKKSTPQRAIAWWGIRMVRDMNMNYLAPLNT 307
Query: 134 L 134
+
Sbjct: 308 V 308
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 45
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 45
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 45
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 48
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 48
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 45
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 342 NNFSNENKLGEGGFGPVYKGKLPNGKEVAVK 372
+ K+GEG +G VYK K G+ VA+K
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALK 51
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 1 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 45
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 48
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 327 GEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
GE L IL T F LG G FG VYKG +P G++V +
Sbjct: 4 GEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 48
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 342 NNFSNENKLGEGGFGPVYKGKLPNGKEVAVK 372
+ K+GEG +G VYK K G+ VA+K
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALK 51
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKS 373
L + NF K+GEG +G VYK KL G+ VA+K
Sbjct: 1 LGSMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKK 37
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 333 GLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
L IL T F LG G FG VYKG +P G++V +
Sbjct: 17 ALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKI 55
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKS 373
L + NF K+GEG +G VYK KL G+ VA+K
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKK 38
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKS 373
L + NF K+GEG +G VYK KL G+ VA+K
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKK 38
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKS 373
L + NF K+GEG +G VYK KL G+ VA+K
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKK 38
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 323 GEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
G SGE L IL T F L G FG VYKG +P G++V +
Sbjct: 4 GIRSGEAPNQALLRILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKI 52
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 323 GEDSGEMHYIGLTTILAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAV 371
G SGE L IL T F L G FG VYKG +P G++V +
Sbjct: 4 GIRSGEAPNQALLRILKETE-FKKIKVLSSGAFGTVYKGLWIPEGEKVKI 52
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKS 373
L + NF K+GEG +G VYK KL G+ VA+K
Sbjct: 3 LGSMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKK 39
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKG--KLPNGKEVAVKSF 374
L NF K+GEG +G VYK KL G+ VA+K
Sbjct: 3 LVDMENFQKVEKIGEGTYGVVYKARNKL-TGEVVALKKI 40
>pdb|2Z1P|A Chain A, The Enterococcus Faecalis Mscramm Ace Binds Its Ligands By
The Collagen Hug Model
Length = 348
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 133 TLPRLLMWNSQNNTSPEQQNYGALGLIFSLVDSVPRT 169
TLP L+ ++N++SP + N LG +F D V T
Sbjct: 59 TLPDALVGMTENDSSPRKINLNGLGEVFIYKDHVVAT 95
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 338 LAATNNFSNENKLGEGGFGPVYKGK-LPNGKEVAVK 372
L N + K+G G FG +Y G + +G+EVA+K
Sbjct: 5 LRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIK 40
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 344 FSNENKLGEGGFGPVYKGKLPNGKEVAVKS 373
++N +G G FG V++ KL EVA+K
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKK 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,851,316
Number of Sequences: 62578
Number of extensions: 431188
Number of successful extensions: 1049
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 68
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)