BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017219
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 17/219 (7%)
Query: 157 STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQ 216
+T +P+ PPV+ + S+ P +++ P D +H+ VP + FL+LA
Sbjct: 10 TTVRPAKPPVVDR----SLKPGALSNSESIPTID------GLRHVVVPGRLCPQFLQLAS 59
Query: 217 ANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLG 276
ANT + + TCG+L G L F IT ++IPKQ + SD C T NEEE+F +QD+ L LG
Sbjct: 60 ANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLG 119
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRN 336
WIHTHP+QT F+SSVDLHTH SYQ+MLPE+VAIV +P + G F L+D G+ I +
Sbjct: 120 WIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQET--GFFKLTD-HGLEEISS 176
Query: 337 CQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
C+Q+GFHPH + PL+ CSHV + + + DLR
Sbjct: 177 CRQKGFHPHSK---DPPLFCSCSHVTVVDR-AVTITDLR 211
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 7/177 (3%)
Query: 199 QHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTL 258
+H+ VP + FL+LA ANT + +ETCG+L G L F IT ++IPKQ + SD C T
Sbjct: 18 RHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTE 77
Query: 259 NEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
NEEE+F +QD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPE+VAIV +P +
Sbjct: 78 NEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQET 137
Query: 319 PHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
G F L+D G+ I +C+Q+GFHPH + PL+ CSHV + + + DLR
Sbjct: 138 --GFFKLTDH-GLEEISSCRQKGFHPHSKD---PPLFCSCSHVTVVDR-AVTITDLR 187
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 9/174 (5%)
Query: 203 VPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEE 262
+P ++ FL+LA++NT + +ETCG+L G L + F IT +I+PKQ + D C N EE
Sbjct: 13 LPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE 72
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+F VQD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPEA+AIV +P + GI
Sbjct: 73 LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDT--GI 130
Query: 323 FHLSDPGGVSVIRNCQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
F L++ G + V C+++GFHPH +EP L+ C HV + ++ V+DLR
Sbjct: 131 FRLTNAGMLEV-SACKKKGFHPHTKEPR----LFSICKHVLVK-DIKIIVLDLR 178
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 116/174 (66%), Gaps = 9/174 (5%)
Query: 203 VPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEE 262
+P ++ FL+LA++NT + + TCG+L G L + F IT +I+PKQ + D C N EE
Sbjct: 13 LPEDLCHKFLQLAESNTVRGIATCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE 72
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+F VQD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPEA+AIV +P + GI
Sbjct: 73 LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDT--GI 130
Query: 323 FHLSDPGGVSVIRNCQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
F L++ G + V C+++GFHPH +EP L+ C HV + ++ V+DLR
Sbjct: 131 FRLTNAGMLEV-SACKKKGFHPHTKEPR----LFSICKHVLVK-DIKIIVLDLR 178
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI---FHLSDPGGV 331
+GW H+HP C++SSVD++T S++ + AVA+V+ P + + F L D G
Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTG-- 162
Query: 332 SVIRNCQQR 340
++I N + R
Sbjct: 163 ALINNLEPR 171
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
pdb|4F7O|B Chain B, Crystal Structure Of Csn5
Length = 257
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 134 IGWYHSHPGYGCWLSGIDVSTQXLNQQFQEPFVAVVIDPTRTIS 177
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment
Length = 565
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 197 EYQHLHV-PVNMMQDFLRLAQANTEKNLETCGVLAG-SLKN--RVFHITTLIIPKQESTS 252
E Q+++V P N+++ F+ ++ ++ + G S K+ +V I T+++ Q
Sbjct: 346 EEQNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401
Query: 253 DSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYS-YQIMLPEAVAIVM 311
S Q N +I ++ D L LGWIHT + FM++ ++ TH + + + I +
Sbjct: 402 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI 461
Query: 312 APTDTSSPHGIFHLSDPGGV-----SVIRNCQQRGFHP 344
T S ++L+D G I N GF P
Sbjct: 462 FSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 499
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
Length = 1531
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 197 EYQHLHV-PVNMMQDFLRLAQANTEKNLETCGVLAG-SLKN--RVFHITTLIIPKQESTS 252
E Q+++V P N+++ F+ ++ ++ + G S K+ +V I T+++ Q
Sbjct: 1296 EEQNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 1351
Query: 253 DSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYS-YQIMLPEAVAIVM 311
S Q N +I ++ D L LGWIHT + FM++ ++ TH + + + I +
Sbjct: 1352 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI 1411
Query: 312 APTDTSSPHGIFHLSDPGGV-----SVIRNCQQRGFHP 344
T S ++L+D G I N GF P
Sbjct: 1412 FSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 1449
>pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing
Factor Prp8p From Yeast
Length = 254
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 197 EYQHLHV-PVNMMQDFLRLAQANTEKNLETCGVLAG-SLKN--RVFHITTLIIPKQESTS 252
E Q+++V P N+++ F+ ++ ++ + G S K+ +V I T+++ Q
Sbjct: 35 EEQNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 90
Query: 253 DSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYS-YQIMLPEAVAIVM 311
S Q N +I ++ D L LGWIHT + FM++ ++ TH + + + I +
Sbjct: 91 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI 150
Query: 312 APTDTSSPHGIFHLSDPGGV-----SVIRNCQQRGFHP 344
T S ++L+D G I N GF P
Sbjct: 151 FSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 188
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 197 EYQHLHV-PVNMMQDFLRLAQANTEKNLETCGVLAG-SLKN--RVFHITTLIIPKQESTS 252
E Q+++V P N+++ F+ ++ ++ + G S K+ +V I T+++ Q
Sbjct: 1329 EEQNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 1384
Query: 253 DSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYS-YQIMLPEAVAIVM 311
S Q N +I ++ D L LGWIHT + FM++ ++ TH + + + I +
Sbjct: 1385 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI 1444
Query: 312 APTDTSSPHGIFHLSDPGGV-----SVIRNCQQRGFHP 344
T S ++L+D G I N GF P
Sbjct: 1445 FSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 1482
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 69 GLRGQWLGPSAEIKVH-YPSSTDLTTTEDISLNQAGQYGIVPIKDGD----PGGAISTME 123
GL G+WL +A + Y + E I+L + + KDGD PGGAIS M
Sbjct: 110 GLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMY 169
Query: 124 SVLS 127
S+++
Sbjct: 170 SIMA 173
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 69 GLRGQWLGPSAEIKVH-YPSSTDLTTTEDISLNQAGQYGIVPIKDGD----PGGAISTME 123
GL G+WL +A + Y + E I+L + + KDGD PGGAIS M
Sbjct: 107 GLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMY 166
Query: 124 SVLS 127
S+++
Sbjct: 167 SIMA 170
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 291 VDLHTHYSYQIMLPEAVAIVMA-PTDTSSPHGIFHLSDPGGVSVIRNCQQR 340
D+ T++S PEA+ V D + HGI HL + G ++ +C+QR
Sbjct: 360 ADVRTYWS-----PEAIERVTGHKLDGLAEHGIIHLINSGSAALDGSCKQR 405
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 217 ANTEKNLETCGVLAGSLKNRVFHI--TTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFP 274
A T + L++ G + L N + L K + DSC + ++ +I++ R+ F
Sbjct: 111 AETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFA 170
Query: 275 LGWIHTHPSQTCFMSS 290
+ +P++ CF+SS
Sbjct: 171 CDRLGVNPNEVCFVSS 186
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 217 ANTEKNLETCGVLAGSLKNRVFHI--TTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFP 274
A T + L++ G + L N + L K + DSC + ++ +I++ R+ F
Sbjct: 111 AETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFA 170
Query: 275 LGWIHTHPSQTCFMSS 290
+ +P++ CF+SS
Sbjct: 171 CDRLGVNPNEVCFVSS 186
>pdb|2OOF|A Chain A, The Crystal Structure Of 4-imidazolone-5-propanoate
Amidohydrolase From Environmental Sample
pdb|2Q09|A Chain A, Crystal Structure Of Imidazolonepropionase From
Environmental Sample With Bound Inhibitor
3-(2,5-Dioxo-Imidazolidin-4-Yl)-Propionic Acid
Length = 416
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 91 LTTTEDISLNQAGQYGIVPIKDGD-----PGGAISTMESVLSLDDGRWLHPAEKSCPPMV 145
L TE + L A QYG+ D G ++ LS+D +L P + +
Sbjct: 222 LAQTEQVYL-AADQYGLAVKGHXDQLSNLGGSTLAANFGALSVDHLEYLDP--EGIQALA 278
Query: 146 HE---AREDPFQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLN 194
H A P F K+ PPV+A +++A +P + +D PG A +SL
Sbjct: 279 HRGVVATLLPTAFYFLKETKLPPVVA-LRKAGVPXAVSSDINPGTAPIVSLR 329
>pdb|4IFD|C Chain C, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 393
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 17/178 (9%)
Query: 163 PPPVLAQVQ-QASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQANTEK 221
PP VLA++ + S+ RP + E++ + + N + + +T+
Sbjct: 17 PPEVLARISPELSLQRHLSLGIRPCLRK-----YEEFRDVAIENNTLSRYADAGNIDTKN 71
Query: 222 NLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEV-------QDRLSLFP 274
N+ VL + IT II + ++ EEE+FEV + S++P
Sbjct: 72 NILGSNVLKSGKTIVITSITGGIIEETSASIKDLDDFGEEELFEVTKEEDIIANYASVYP 131
Query: 275 LGWIHTHPSQTC----FMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDP 328
+ + C S LH + +LP+ V A +++ G F + P
Sbjct: 132 VVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANEDGTFSVLYP 189
>pdb|4DJ3|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ3|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
Length = 317
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 203 VPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEE 262
V V ++D LA +T KN +T + L R+ HI+ S ++++ +
Sbjct: 15 VTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVD 74
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSS 290
+ QD + + HT P+Q F ++
Sbjct: 75 LLAPQDVRAFY----AHTAPTQLPFWNN 98
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 152 PFQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPG---PAQDIS 192
P +VS K +P P++ QV QA R+A P PG PAQ +S
Sbjct: 192 PQGYVSYKGVAPTPLVTQVNQAFA--QRLAQPNPGFELPAQCVS 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,972,131
Number of Sequences: 62578
Number of extensions: 435521
Number of successful extensions: 838
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 25
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)