BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017219
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3
PE=1 SV=2
Length = 507
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/359 (70%), Positives = 290/359 (80%), Gaps = 7/359 (1%)
Query: 23 QSSW-RNSTQVSSSSSSQIDKQFQKLSVNIPLPKKETLSRHSFLGPHGLRGQWLGPSAEI 81
Q SW N+ SSS+ +QID+QFQKLS + P + TLSRHSFLGP+GL+ Q + P +EI
Sbjct: 150 QPSWTYNNNLTSSSNRTQIDQQFQKLSFDFLPPNQATLSRHSFLGPNGLKRQMVAPKSEI 209
Query: 82 KVHYPSSTDLTTTEDISLNQAGQYGIVPIKDGDPGGAISTMESVLSLDDGRWLHPAEKSC 141
KV YPS+TD + ++ L +AG +GD +ST+ SVLSLDDGRW +E
Sbjct: 210 KVQYPSNTDWGSADNSGLIEAGPSSSSASLNGD-SQEVSTLNSVLSLDDGRWQRHSEAVN 268
Query: 142 PPMVHEAREDPFQFVSTKQPSPPPVLAQVQQ--ASIPPSRVADPRPGPA---QDISLNTN 196
+ +A EDPFQFV KQPSPPPVLAQV Q A I PS+VADPRPGPA + +N
Sbjct: 269 SQFISDATEDPFQFVGMKQPSPPPVLAQVHQELAQICPSKVADPRPGPAIPSLEGKEGSN 328
Query: 197 EYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQ 256
YQHLHVPV +M DFLRLA++NTE+NLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQ
Sbjct: 329 SYQHLHVPVRIMDDFLRLARSNTERNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQ 388
Query: 257 TLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDT 316
TLNEEEIFEVQDRLSLFPLGWIHTHP+QTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTD
Sbjct: 389 TLNEEEIFEVQDRLSLFPLGWIHTHPTQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDE 448
Query: 317 SSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
S+PHGIFHLSDP GVSVIRNCQQRGFHPHEE EDG+P+YEHCSHVF+NAKL+++V+DLR
Sbjct: 449 STPHGIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEVLDLR 507
>sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1
PE=2 SV=1
Length = 507
Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 233/350 (66%), Gaps = 17/350 (4%)
Query: 36 SSSQIDKQFQKLSVNIPLPKKETLSRHSFLGPHGLRGQWLGPSAEIKVHYPSSTDLTTTE 95
+++ ++++F+K+SVN P +ETLS+HS LGP GL QW P + KV YPS+ D +
Sbjct: 165 NAAPLEERFRKMSVNF-RPNEETLSKHSILGPGGLSAQWQPPKYDTKVQYPSNIDFSPVV 223
Query: 96 DISLNQA--GQYGIVPIKDGDPGGAISTMESVLSLDDGRWLHPAEKSCPPMVHEAREDPF 153
S Q + I + +P I +E ++ ++ + E+ + E E
Sbjct: 224 IPSFQQLVDSKPMITNGSNDEPEKPI--VEPSVASNEKIQKNYTEELSSMISFEEPESVN 281
Query: 154 QFVSTKQPSPPPVLAQVQ--------QASIPPSRVADPRPGPAQDISLNTNEYQHLHVPV 205
+ +QPSPPPVLA+VQ + P + + P D SL + LH+
Sbjct: 282 ENNLIRQPSPPPVLAEVQDLVPALCPEVREPECMIENSLP----DESLRSESPLELHIAT 337
Query: 206 NMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFE 265
+MM F+RLA++NT+KNLETCG+LAGSLKNR F+IT LIIPKQESTSDSCQ NEEEIFE
Sbjct: 338 SMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFE 397
Query: 266 VQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHL 325
VQD+ SLFPLGWIHTHP+Q+CFMSS+D+HTHYSYQIMLPEAVAIVMAP D+S HGIF L
Sbjct: 398 VQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGIFRL 457
Query: 326 SDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
+ PGG++VIRNC +RGFH H PEDG P+Y C V+MN L+FDV+DLR
Sbjct: 458 TTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507
>sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2
PE=2 SV=1
Length = 223
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 146/175 (83%)
Query: 201 LHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNE 260
+H+ +++DF LA+ NTEK+LETCG LA L+ +F++TTLIIPKQESTS+SCQ +NE
Sbjct: 49 VHISERLLEDFTELARENTEKDLETCGTLAAFLERGIFYVTTLIIPKQESTSNSCQAMNE 108
Query: 261 EEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPH 320
E+F +Q+ L+P+GWIHTHPSQ CFMSSVDLHTHYSYQ+M+PEA AIV+APTD+S +
Sbjct: 109 VEVFSIQNERELYPVGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSY 168
Query: 321 GIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
GIF L+DPGG+ V+R C + GFHPH+EPEDG+P+YEHCS+V+ N+ L+F++ DLR
Sbjct: 169 GIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 223
>sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sst2 PE=1 SV=1
Length = 435
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 138/208 (66%), Gaps = 19/208 (9%)
Query: 178 SRVADPRPGPAQDISLNT-----NEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGS 232
+R ++PRP PA ++ + +++P + + FL + + NT+KNLETCG+L G
Sbjct: 235 TRTSEPRPKPAGTFKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGK 294
Query: 233 LKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVD 292
L+ F IT L+IP QE+TSD+C T +E +FE QD+ +L LGWIHTHP+QTCFMSSVD
Sbjct: 295 LRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVD 354
Query: 293 LHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRG-FHPHEEPEDG 351
LHTH SYQ+MLPEA+AIVMAP+ +S GIF L DP G+ I C++ G FHPHE
Sbjct: 355 LHTHCSYQLMLPEAIAIVMAPSKNTS--GIFRLLDPEGLQTIVKCRKPGLFHPHE----- 407
Query: 352 SPLYEHCS---HVF-MNAKLQFDVVDLR 375
+Y + HV +N+KLQ VVDLR
Sbjct: 408 GKVYTMVAQPGHVREINSKLQ--VVDLR 433
>sp|Q54Q40|D1039_DICDI Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum
GN=DG1039 PE=3 SV=1
Length = 715
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 207 MMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEV 266
+ Q+F+RLA+ NT++++ETCG+L+G+L N VF ITT+IIPKQE T+D+C T+ E EIFE
Sbjct: 543 VFQEFMRLAENNTKRSIETCGILSGTLSNDVFRITTIIIPKQEGTTDTCNTIEEHEIFEY 602
Query: 267 QDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPH-GIFHL 325
Q L LGWIHTHP+Q CF+S+VD+HTH SYQ +L EA+A+V++P ++P+ GIF L
Sbjct: 603 QLENDLLTLGWIHTHPTQDCFLSAVDVHTHCSYQYLLQEAIAVVISP--MANPNFGIFRL 660
Query: 326 SDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFM--NAKLQFDVVDLR 375
+DP G+ ++ C+ + FHPH P +G P+Y HV + K VVDLR
Sbjct: 661 TDPPGLETVQKCKLKSFHPH-PPVNGIPIYTKVDHVDLIWGKKSDSKVVDLR 711
>sp|Q8R424|STABP_RAT STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1
Length = 424
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 133/219 (60%), Gaps = 17/219 (7%)
Query: 157 STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQ 216
+T +P+ PPV+ + S+ P ++ P +H+ VP N+ +FL+LA
Sbjct: 223 TTLRPAKPPVVDR----SLKPGALSVIENVP------TIEGLRHIVVPRNLCSEFLQLAS 272
Query: 217 ANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLG 276
ANT K +ETCGVL G L F IT ++IP+Q D C T NEEEIF +QD L L LG
Sbjct: 273 ANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLG 332
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRN 336
WIHTHP+QT F+SSVDLHTH SYQ+MLPE++AIV +P + G F L+D G+ I
Sbjct: 333 WIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFQET--GFFKLTD-YGLQEIST 389
Query: 337 CQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
C+Q+GFHPH PL+ CSHV + ++ + DLR
Sbjct: 390 CRQKGFHPHGR---DPPLFCDCSHVTVKDRI-VTITDLR 424
>sp|Q9CQ26|STABP_MOUSE STAM-binding protein OS=Mus musculus GN=Stambp PE=2 SV=1
Length = 424
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 117/177 (66%), Gaps = 7/177 (3%)
Query: 199 QHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTL 258
+H+ VP N+ +FL+LA ANT K +ETCGVL G L F IT ++IP+Q D C T
Sbjct: 255 RHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTE 314
Query: 259 NEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
NEEEIF +QD L L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPE++AIV +P +
Sbjct: 315 NEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFQET 374
Query: 319 PHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
G F L+D G+ I C+Q+GFHPH PL+ CSHV + ++ + DLR
Sbjct: 375 --GFFKLTD-YGLQEISTCRQKGFHPHGR---DPPLFCDCSHVTVKDRI-VTITDLR 424
>sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1
Length = 424
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 136/219 (62%), Gaps = 17/219 (7%)
Query: 157 STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQ 216
+T +P+ PPV+ + S+ P +++ P D +H+ VP + FL+LA
Sbjct: 223 TTVRPAKPPVVDR----SLKPGALSNSESIPTID------GLRHVVVPGRLCPQFLQLAS 272
Query: 217 ANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLG 276
ANT + +ETCG+L G L F IT ++IPKQ + SD C T NEEE+F +QD+ L LG
Sbjct: 273 ANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLG 332
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRN 336
WIHTHP+QT F+SSVDLHTH SYQ+MLPE+VAIV +P + G F L+D G+ I +
Sbjct: 333 WIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQET--GFFKLTD-HGLEEISS 389
Query: 337 CQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
C+Q+GFHPH + PL+ CSHV + + + DLR
Sbjct: 390 CRQKGFHPHSK---DPPLFCSCSHVTVVDR-AVTITDLR 424
>sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3
Length = 418
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 22/206 (10%)
Query: 172 QASI----PPSRVADPRPGPAQDISLN------------TNEYQHLHVPVNMMQDFLRLA 215
QAS+ PP+ + + PA D SL N + L VP + Q FL+LA
Sbjct: 206 QASLSPQTPPAGATNHQGLPAFDRSLKPSVPVSAGHSALVNGLRQLFVPAELCQRFLKLA 265
Query: 216 QANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPL 275
+ NT + +ETCG+L G L F +T +I+PKQ D C T NEEE+F +QD+ L L
Sbjct: 266 ETNTARAVETCGILCGKLMKNAFTVTHVIVPKQCGGPDYCDTENEEELFLIQDQNDLITL 325
Query: 276 GWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIR 335
GWIHTHP+QT F+SSVDLHTH SYQ+MLPE++AIV +P + G F L+D G+ +
Sbjct: 326 GWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFNET--GYFRLTD-YGMDDVG 382
Query: 336 NCQQRGFHPHEEPEDGSPLYEHCSHV 361
C+QRGFHPH P+D PL+ HV
Sbjct: 383 TCKQRGFHPH--PKD-PPLFAASHHV 405
>sp|Q96FJ0|STALP_HUMAN AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2
Length = 436
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 9/174 (5%)
Query: 203 VPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEE 262
+P ++ FL+LA++NT + +ETCG+L G L + F IT +I+PKQ + D C N EE
Sbjct: 271 LPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE 330
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+F VQD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPEA+AIV +P + GI
Sbjct: 331 LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDT--GI 388
Query: 323 FHLSDPGGVSVIRNCQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
F L++ G + V C+++GFHPH +EP L+ C HV + ++ V+DLR
Sbjct: 389 FRLTNAGMLEV-SACKKKGFHPHTKEPR----LFSICKHVLVK-DIKIIVLDLR 436
>sp|Q5R558|STALP_PONAB AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1
Length = 436
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 116/174 (66%), Gaps = 9/174 (5%)
Query: 203 VPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEE 262
+P ++ FL+LA++NT + +ETCG+L G L + F IT +I+PKQ + D C N EE
Sbjct: 271 LPKDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDVENVEE 330
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+F VQD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+ML EA+AIV +P + GI
Sbjct: 331 LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLSEAIAIVCSPKHKDT--GI 388
Query: 323 FHLSDPGGVSVIRNCQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
F L++ G + V C+++GFHPH +EP L+ C HV + ++ V+DLR
Sbjct: 389 FRLTNAGMLEV-SACKKKGFHPHTKEPR----LFSICKHVLVK-DIKIIVLDLR 436
>sp|Q63ZM7|STABP_XENLA STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1
Length = 416
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 132/220 (60%), Gaps = 20/220 (9%)
Query: 157 STKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQ 216
T QP PP V S+ PS G + ++ +H+ +P ++ FL+L++
Sbjct: 216 GTVQPHPPAV-----DRSLKPSSYGSNSSG------VTSDGLRHVKIPRDVCCKFLQLSE 264
Query: 217 ANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLG 276
NT++ +ETCG+L G L F +T +I+PKQ D C T +EEE+F +QD+ L LG
Sbjct: 265 NNTQRGVETCGILCGKLLQNEFTVTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLG 324
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRN 336
WIHTHP+QT F+SSVDLHTH SYQ+MLPE++AIV +P + G F L+D G+ I
Sbjct: 325 WIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFQET--GFFKLTD-YGMKEIGE 381
Query: 337 CQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
C+Q+GFHPH +EP PL+ HV + + ++DLR
Sbjct: 382 CRQKGFHPHCKEP----PLFSAGGHVSVTEQ-DVTMMDLR 416
>sp|Q76N33|STALP_MOUSE AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1
Length = 436
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 9/171 (5%)
Query: 206 NMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFE 265
++ FL LA +NT + +ETCG+L G L + F IT +++PKQ + D C N EE+F
Sbjct: 274 DLCHKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFN 333
Query: 266 VQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHL 325
VQD+ L LGWIHTHP+QT F+SSVDLHTH SYQ+MLPEA+AIV +P + GIF L
Sbjct: 334 VQDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDT--GIFRL 391
Query: 326 SDPGGVSVIRNCQQRGFHPH-EEPEDGSPLYEHCSHVFMNAKLQFDVVDLR 375
++ G + V C+++GFHPH ++P+ L+ CSHV + ++ V+DLR
Sbjct: 392 TNAGMLEV-STCKKKGFHPHTKDPK----LFSICSHVLVK-DIKTTVLDLR 436
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 223 LETCGVLAGS-LKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFP-----LG 276
LE G++ G + + ++T + Q TS + ++++ + D L L +G
Sbjct: 49 LEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVG 108
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRN 336
W H+HP C++SSVD++T S++ + P AVA+V+ P S G L V+ + N
Sbjct: 109 WYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDP--IQSVKGKVMLDAFRSVNPL-N 165
Query: 337 CQQRGFHPHEEPEDGSPLYEHCS 359
Q R P EP + H +
Sbjct: 166 LQIRPLAPTAEPRQTTSNLGHLT 188
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDT 316
+GW H+HP C++SSVD++T S++ + P AVA+V+ P +
Sbjct: 108 VGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQS 149
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI---FHLSDPGGV 331
+GW H+HP C++SSVD++T S++ + AVA+V+ P + + F L D G
Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTG-- 162
Query: 332 SVIRNCQQR 340
++I N + R
Sbjct: 163 ALINNLEPR 171
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI---FHLSDPGGV 331
+GW H+HP C++SSVD+ T S++ + AVA+V+ P + + F L P
Sbjct: 110 VGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPA-- 167
Query: 332 SVIRNCQQR 340
+V+RN + R
Sbjct: 168 TVVRNQEPR 176
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI---FHLSDPGGV 331
+GW H+HP C++SSVD++T S++ + AVA+V+ P + + F L D G +
Sbjct: 105 VGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGAL 164
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 223 LETCGVLAGSLKNR-VFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSL-----FPLG 276
LE G++ G L + + + Q TS S + ++ ++ D L +G
Sbjct: 51 LEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDMLKQTGRDEIVIG 110
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
W H+HP C++SSVD++T S++ + AVA+V+ P
Sbjct: 111 WYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDP 147
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+GW H+HP C++S+VD+ T S++ + AVA+V+ P
Sbjct: 99 VGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDP 137
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI---FHLSDP 328
+GW H+HP C++S VD++T S++ + AVA+V+ P + + F L +P
Sbjct: 107 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINP 163
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+GW H+HP C++S VD++T S++ + AVA+V+ P
Sbjct: 111 VGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDP 149
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+GW H+HP C++S VD++T S++ + AVA+V+ P
Sbjct: 108 VGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDP 146
>sp|Q7RXX8|CSN5_NEUCR COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rri-1 PE=1 SV=1
Length = 336
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 163 PPPVLAQVQQASIPP------SRVADPRPGPAQDISLNTNEYQHLH-VPVNMMQDFLRLA 215
P P L VQ+ ++ V + RP TN++++ V ++ + +
Sbjct: 5 PNPGLVDVQRDALYAYDSEAHKAVVNSRPW--------TNDHKYFKTVRISSVAMIKMVM 56
Query: 216 QANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQ-------- 267
A + NLE G++ G ++ IT E T +E + V+
Sbjct: 57 HARSGGNLEVMGMMQGYIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREE 116
Query: 268 DRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+RL +GW H+HP C++S +D+ T Q VA+V+ P T S + +
Sbjct: 117 NRLENV-IGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKV 170
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+GW H+HP C++S VD++T S++ + AVA+V+ P
Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 147
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+GW H+HP C++S VD++T S++ + AVA+V+ P
Sbjct: 109 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 147
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 202 HVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEE 261
HV ++ + + A + LE G+L G ++N I E T E
Sbjct: 53 HVKISAIALLKMVMHARSGGKLEVMGMLMGKVENNTMIIMDSFALPVEGTETRVNAQVEA 112
Query: 262 EIFEVQDRLSLF--------PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
+ V + L L LGW H+HP C++S +D+ T Q + IV+ P
Sbjct: 113 YEYMV-EYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDP 171
Query: 314 TDTSS 318
T T S
Sbjct: 172 TRTVS 176
>sp|Q4P804|CSN5_USTMA COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRI1 PE=3 SV=1
Length = 406
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 224 ETCGVLAGSL--KNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQ--------DRLSLF 273
E G++ G + +NR ++ E T NE + VQ RL
Sbjct: 82 EIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENV 141
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
+GW H+HP C++S +D++T + Q VAIV+ P T S
Sbjct: 142 -VGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTIS 185
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 213 RLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQ-ESTSD---------SCQTLNEEE 262
RLA A E C V R+ HI ++II ++ + T D S ++ E
Sbjct: 51 RLAYAGAE----MCTVAKKMEATRIVHIHSVIILRRSDKTKDRVEISPEQLSAASIEAER 106
Query: 263 IFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGI 322
+ E R + +GW H+HP T + S VD+ T YQ+M V ++ A P I
Sbjct: 107 LAEQTGR-PMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQSFVGLIFACFIEDKPTKI 165
>sp|Q4IJM4|CSN5_GIBZE COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3
SV=1
Length = 340
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 202 HVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNE- 260
HV ++ A + NLE G++ G + F +T E T +E
Sbjct: 51 HVRISATALIKMTMHARSGGNLEVMGLMQGYTQGDTFIVTDAFRLPVEGTETRVNAQDEA 110
Query: 261 -EEIFEVQDRLSL-----FPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPT 314
E I E D +GW H+HP C++S +D+ T Q +A+V+ P
Sbjct: 111 NEYIVEYLDLCRAQGRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPD 170
Query: 315 DT 316
T
Sbjct: 171 RT 172
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans
GN=csn-5 PE=1 SV=1
Length = 368
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 222 NLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNE--------EEIFEVQDRLSLF 273
NLE G+L G + F I + E T + E+ + + R
Sbjct: 75 NLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKV 134
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
+GW H+HP C++S +D+ T Q VAIV+ P T S
Sbjct: 135 -VGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMS 178
>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP8 PE=1 SV=1
Length = 2413
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 197 EYQHLHV-PVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSC 255
E Q+++V P N+++ F+ ++ + G+ A +V I T+++ Q S
Sbjct: 2178 EEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKD-HPKVKEIKTVVLVPQLGHVGSV 2236
Query: 256 QTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYS-YQIMLPEAVAIVMAPT 314
Q N +I ++ D L LGWIHT + FM++ ++ TH + + + I + T
Sbjct: 2237 QISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST 2296
Query: 315 DTSSPHGIFHLSDPGGV-----SVIRNCQQRGFHP 344
S ++L+D G I N GF P
Sbjct: 2297 PGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 2331
>sp|P0CQ24|CSN5_CRYNJ COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRI1 PE=3 SV=1
Length = 371
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 224 ETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLS-------LFPLG 276
E G++ G +++ F I + + T NE + V + + G
Sbjct: 72 EIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRG 131
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
W H+HP C++S +D++T + Q +A+V+ P T S
Sbjct: 132 WYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVS 173
>sp|P0CQ25|CSN5_CRYNB COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRI1 PE=3 SV=1
Length = 371
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 224 ETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLS-------LFPLG 276
E G++ G +++ F I + + T NE + V + + G
Sbjct: 72 EIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRG 131
Query: 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
W H+HP C++S +D++T + Q +A+V+ P T S
Sbjct: 132 WYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVS 173
>sp|Q6FT36|CSN5_CANGA COP9 signalosome complex subunit 5 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RRI1 PE=3 SV=1
Length = 465
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 27/161 (16%)
Query: 214 LAQANTEKNLETCGVLAGSLKNRVFHI-----------TTLIIPKQESTSDSCQTLNEE- 261
L A N+E G+L G++ F I T++ ES Q +E
Sbjct: 85 LCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMV 144
Query: 262 EIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHG 321
E ++ +L +GW H+HP C++S++D+ T Q +AIV+ P + +
Sbjct: 145 ERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQK 204
Query: 322 IFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVF 362
+ + F +++ D + YE + VF
Sbjct: 205 V---------------RIGSFRTYQDQNDDTNFYELNTTVF 230
>sp|Q4WZP2|CSN5_ASPFU COP9 signalosome complex subunit 5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=csn5
PE=3 SV=2
Length = 334
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 217 ANTEKNLETCGVLAGSLKNRVFHIT---TLIIPKQESTSDSCQTLNEEEIFEVQD----- 268
A + +LE G++ G + F +T L + E+ ++ + NE + +Q
Sbjct: 65 ARSGGSLEVMGLMQGYILPETFVVTDAFRLPVEGTETRVNAQEEANEYMVSYLQSCRDAG 124
Query: 269 RLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
R+ +GW H+HP C++S +D+ T Q+ P VA+V+ P T S
Sbjct: 125 RME-NAVGWYHSHPGYGCWLSGIDVTTQDMQQLGGP-FVAVVIDPERTIS 172
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 133 AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISA 178
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1
SV=4
Length = 334
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 133 AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISA 178
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 131 AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISA 176
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 133 AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISA 178
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319
+GW H+HP C++S +D+ T Q VA+V+ PT T S
Sbjct: 131 AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISA 176
>sp|Q6C703|CSN5_YARLI COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRI1 PE=3 SV=1
Length = 354
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
+GW H+HP C++S +D+ T + Q +A+V+ P T S
Sbjct: 135 VGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTIS 178
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
+GW H+HP C++S +D+ T Q VAIV+ P T S
Sbjct: 131 VGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVS 174
>sp|Q5BBF1|CSN5_EMENI COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rri1 PE=1 SV=2
Length = 335
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 217 ANTEKNLETCGVLAGSLKNRVFHIT---TLIIPKQESTSDSCQTLNEEEIFEVQD----- 268
A + +LE G++ G + F +T L + E+ ++ NE + +Q
Sbjct: 65 ARSGGSLEVMGLMQGYILPNTFVVTDAFRLPVEGTETRVNAQDEANEYMVSYLQSCREAG 124
Query: 269 RLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS 318
R+ +GW H+HP C++S +D+ T Q+ P VA+V+ P T S
Sbjct: 125 RME-NAVGWYHSHPGYGCWLSGIDVSTQDMQQMSGP-FVAVVIDPERTIS 172
>sp|O94454|CSN5_SCHPO COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn5 PE=1 SV=1
Length = 299
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDT-SSPH---GIFHLSDPGG 330
+GW H+HP+ C++S VD+ T Q VA+V+ P + SP+ G F G
Sbjct: 114 IGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFRTYPVGN 173
Query: 331 VSVIR 335
IR
Sbjct: 174 DGSIR 178
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana
GN=CSN5A PE=1 SV=1
Length = 358
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVI 334
+GW H+HP C++S +D+ T Q +A+V+ PT T S + +
Sbjct: 138 VGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKV-------EIGAF 190
Query: 335 RNCQQRGFHPHEEP 348
R +G+ P +EP
Sbjct: 191 R-TYSKGYKPPDEP 203
>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2
SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 218 NTEKNLETCGVLAGSL-KNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQ---DRLS-- 271
+TEK E G+ G + NR+ HI ++II ++ ++ E++ +RL+
Sbjct: 22 STEKE-EVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRVEISPEQLSSAATEAERLAEM 80
Query: 272 ----LFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMA 312
+ +GW H+HP T + S VD+ T YQ+M V ++ +
Sbjct: 81 TGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 125
>sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRI1 PE=1 SV=2
Length = 440
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 272 LFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
L +GW H+HP C++S++D+ T Q VAIV+ P
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDP 198
>sp|A6ZXB7|CSN5_YEAS7 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRI1 PE=3 SV=2
Length = 440
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 272 LFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
L +GW H+HP C++S++D+ T Q VAIV+ P
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDP 198
>sp|B3LH96|CSN5_YEAS1 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=RRI1 PE=3 SV=2
Length = 440
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 272 LFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAP 313
L +GW H+HP C++S++D+ T Q VAIV+ P
Sbjct: 157 LNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDP 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,346,631
Number of Sequences: 539616
Number of extensions: 6172279
Number of successful extensions: 18173
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 18059
Number of HSP's gapped (non-prelim): 129
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)