Query 017219
Match_columns 375
No_of_seqs 175 out of 748
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:53:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2znr_A AMSH-like protease; met 100.0 1.8E-47 6E-52 346.3 12.8 173 196-375 6-178 (178)
2 3rzv_A STAM-binding protein; u 100.0 4.9E-46 1.7E-50 345.9 13.1 173 196-375 39-211 (211)
3 4b4t_V 26S proteasome regulato 100.0 5.2E-28 1.8E-32 235.1 14.3 139 191-332 17-164 (306)
4 2og4_A PRE-mRNA-splicing facto 99.9 2.4E-26 8.2E-31 218.3 5.4 144 197-345 36-189 (254)
5 2kks_A Uncharacterized protein 99.9 5.8E-24 2E-28 185.1 14.2 121 200-327 1-125 (146)
6 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1.9E-24 6.7E-29 189.4 10.8 120 201-327 1-127 (153)
7 2p8r_A PRP8, PRE-mRNA-splicing 99.9 3.5E-25 1.2E-29 212.1 6.0 142 197-345 37-191 (273)
8 2o95_A 26S proteasome non-ATPa 99.8 7.7E-19 2.6E-23 158.0 15.0 125 197-327 6-143 (187)
9 1oi0_A AF2198, hypothetical pr 99.8 1.7E-19 5.9E-24 152.9 9.8 108 200-325 3-111 (124)
10 3sbg_A PRE-mRNA-splicing facto 99.7 4.7E-18 1.6E-22 173.8 8.0 136 198-340 348-489 (565)
11 4e0q_A COP9 signalosome comple 99.6 9.3E-16 3.2E-20 134.0 11.9 118 197-319 4-129 (141)
12 4b4t_U RPN8, 26S proteasome re 99.1 8.8E-10 3E-14 108.2 15.8 126 198-327 5-141 (338)
13 2qlc_A DNA repair protein RADC 94.3 0.33 1.1E-05 41.3 10.3 74 222-300 23-96 (126)
No 1
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=100.00 E-value=1.8e-47 Score=346.28 Aligned_cols=173 Identities=47% Similarity=0.877 Sum_probs=162.3
Q ss_pred CCceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHHHHhhCCCccE
Q 017219 196 NEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPL 275 (375)
Q Consensus 196 ~~~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~~rgLeiV 275 (375)
+++++|.|+++++++|++||++++.++.|+||+|+|+..++.++|+++|+++|.++++++++.+++++++++..+++++|
T Consensus 6 ~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~v 85 (178)
T 2znr_A 6 EGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTL 85 (178)
T ss_dssp CSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEE
Confidence 46788999999999999999998734579999999999878899999999999999999999999999999889999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCCceeEEEeeCCCCCceeecccccCCccCCCCCCCCCcc
Q 017219 276 GWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLY 355 (375)
Q Consensus 276 GWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts~~lrAFRLsdp~Gm~~~~~c~~~gFhph~~~~~~~~iy 355 (375)
|||||||.++|+||.+|+++|++||+++|++++||+||..+ .++||||++ +|++++++|+++|||||.+ +.+||
T Consensus 86 GwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--~~~afrl~~-~g~~~~~~~~~~~f~p~~~---~~~~~ 159 (178)
T 2znr_A 86 GWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--DTGIFRLTN-AGMLEVSACKKKGFHPHTK---EPRLF 159 (178)
T ss_dssp EEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--EEEEEEECH-HHHHHHHHCCCCSSCCCCC---SSCSE
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--cceEEEEEC-CcEeeecccCCCCcccCCC---CCCce
Confidence 99999999999999999999999999999999999999985 489999997 6999999999999999984 57999
Q ss_pred ccccceEecCCCceeEeeCC
Q 017219 356 EHCSHVFMNAKLQFDVVDLR 375 (375)
Q Consensus 356 ~~~~~v~~~~~~~~~~~dlr 375 (375)
++|+||++++++ |+|+|||
T Consensus 160 ~~~~~~~~~~~~-~~~~~~r 178 (178)
T 2znr_A 160 SICKHVLVKDIK-IIVLDLR 178 (178)
T ss_dssp EECSSEEEECCC-CEEEECC
T ss_pred EEeceEEEeCCe-eEEEecC
Confidence 999999999999 9999999
No 2
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=100.00 E-value=4.9e-46 Score=345.88 Aligned_cols=173 Identities=51% Similarity=0.902 Sum_probs=162.3
Q ss_pred CCceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHHHHhhCCCccE
Q 017219 196 NEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPL 275 (375)
Q Consensus 196 ~~~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~~rgLeiV 275 (375)
+.+++|.|+++++++|++||+.++.++.|+||+|+|+..+++++|+++++++|.++++++++.++++++++++.+++++|
T Consensus 39 ~~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~v 118 (211)
T 3rzv_A 39 DGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITL 118 (211)
T ss_dssp TTBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEE
T ss_pred cccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEE
Confidence 36788999999999999999998634589999999999888999999999999999999999999999999989999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCCceeEEEeeCCCCCceeecccccCCccCCCCCCCCCcc
Q 017219 276 GWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLY 355 (375)
Q Consensus 276 GWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts~~lrAFRLsdp~Gm~~~~~c~~~gFhph~~~~~~~~iy 355 (375)
|||||||.+++|||..|+++|++||++++++|+|||||... .++||||++ +||+|+++|+++|||||.+ +.+||
T Consensus 119 GWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~--~lgaFrLtp-~G~~~~~~c~~~~fhph~~---~~~~~ 192 (211)
T 3rzv_A 119 GWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ--ETGFFKLTD-HGLEEISSCRQKGFHPHSK---DPPLF 192 (211)
T ss_dssp EEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT--EEEEEEECH-HHHHHHHHCCCCSSCCCCC---SSCSE
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC--eeeEEEecc-chhhhhhccccCCcccCCC---CCCce
Confidence 99999999999999999999999999999999999999864 699999996 6999999999999999987 37999
Q ss_pred ccccceEecCCCceeEeeCC
Q 017219 356 EHCSHVFMNAKLQFDVVDLR 375 (375)
Q Consensus 356 ~~~~~v~~~~~~~~~~~dlr 375 (375)
+.|.||++++.+ |+|+|||
T Consensus 193 ~~~~hv~~~~~~-~~~~dlr 211 (211)
T 3rzv_A 193 CSCSHVTVVDRA-VTITDLR 211 (211)
T ss_dssp EECSSEEEECCC-CEEEECC
T ss_pred EEeeeEEEcCCE-eEEEeCC
Confidence 999999998888 9999999
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-28 Score=235.07 Aligned_cols=139 Identities=22% Similarity=0.385 Sum_probs=120.5
Q ss_pred CCCCCCCceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeC-CCeEEEEEEEecCCCCCCCcccccCHHHHHHHHh-
Q 017219 191 ISLNTNEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLK-NRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQD- 268 (375)
Q Consensus 191 ~~~~~~~~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~-~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~- 268 (375)
+....+..+.|+|+..++++|++||+++. |.|+||+|+|... +++++|+++|++|+.+++.++++.|++...++++
T Consensus 17 ~~~~~~~~~~V~is~lallkm~~Ha~~~~--~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~ 94 (306)
T 4b4t_V 17 DTGRDDTKETVYISSIALLKMLKHGRAGV--PMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDM 94 (306)
T ss_dssp CCCCCSSCCEEEECHHHHHHHHHHTCSCS--SSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeHHHHHHHHHHhcCCC--CceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHH
Confidence 34555678999999999999999999987 9999999999865 5689999999999998888888888754444422
Q ss_pred ----hCCCccEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCC---ceeEEEeeCCCCCc
Q 017219 269 ----RLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSS---PHGIFHLSDPGGVS 332 (375)
Q Consensus 269 ----~rgLeiVGWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts~---~lrAFRLsdp~Gm~ 332 (375)
.+++.+||||||||.++||||..||++|+.||.+.+++|+||+||.++.. .++|||++++ ++.
T Consensus 95 ~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~-~~~ 164 (306)
T 4b4t_V 95 LKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDT-GAL 164 (306)
T ss_dssp HHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHH-HHH
T ss_pred HHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCc-ccc
Confidence 37899999999999999999999999999999999999999999988764 4799999985 543
No 4
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-26 Score=218.27 Aligned_cols=144 Identities=24% Similarity=0.368 Sum_probs=128.1
Q ss_pred CceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeC---CCeEEEEEEEecCCCCCCCcccccCHHHHHHHHhhCCCc
Q 017219 197 EYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLK---NRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLF 273 (375)
Q Consensus 197 ~~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~---~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~~rgLe 273 (375)
..++++||++++++|+.+|+.++ |+||+|+|+.. .++++|++++++||.++.++|.+.++...+++++..+|+
T Consensus 36 ~~~t~vlPknLlkkFi~IAD~~T----q~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe 111 (254)
T 2og4_A 36 EQNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLE 111 (254)
T ss_dssp TSCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCE
T ss_pred CCcEEEcCHHHHHHHHHHhhccc----eEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCE
Confidence 44689999999999999999875 89999999985 268999999999999999999998877777777789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhhcC-CCeEEEEEcCCCCCCceeEEEeeCCCCCceeecccc------cCCccC
Q 017219 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIML-PEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQ------RGFHPH 345 (375)
Q Consensus 274 iVGWYHSHP~~~afPSstDL~tq~sYQ~~~-PeaVaLIvSP~~ts~~lrAFRLsdp~Gm~~~~~c~~------~gFhph 345 (375)
.+||+||||++.+|+|+.|+++|++||.++ +++|+|+|+|+.++..++||||++ .|++|.++=++ .||+|+
T Consensus 112 ~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~~g~~~~ 189 (254)
T 2og4_A 112 LLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDIMNVLSEGFEPT 189 (254)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTCCSCCSSCCTTCCGG
T ss_pred ecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcCh-hhhhhhhhcccccccCCCCCCcc
Confidence 999999999999999999999999999954 999999999998888899999998 59999876554 356654
No 5
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.91 E-value=5.8e-24 Score=185.06 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=106.8
Q ss_pred EEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHHHH---hhCCCccEE
Q 017219 200 HLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQ---DRLSLFPLG 276 (375)
Q Consensus 200 ~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q---~~rgLeiVG 276 (375)
+|.|++.++.+|++||+++. |.|+||+|+|+..++...|+.+++++|...+...|.+|++++++++ +.+|+.+||
T Consensus 1 ml~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQAL--PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp CEEEEHHHHHHHHHHHHHHT--TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEECHHHHHHHHHHHHhcC--CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCCCEEEE
Confidence 37899999999999999998 9999999999988777899999999988777777899999888874 568999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCC-CCCceeEEEeeC
Q 017219 277 WIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTD-TSSPHGIFHLSD 327 (375)
Q Consensus 277 WYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~-ts~~lrAFRLsd 327 (375)
||||||.++++||.+|+.+ +..+++++||+++.. ....++||++.+
T Consensus 79 ~~HSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~~~~~~~af~~~~ 125 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRL-----AFDPSLSYLIISLAEPQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEESSSCSSCCHHHHTT-----CCSSSCEEEEEECSCSSSCEEEEEEECS
T ss_pred EEeCCCcCCCCCCHHHHHh-----hhcCCCeEEEEEccCCCceEEEEEEEeC
Confidence 9999999999999999974 346899999999987 346799999965
No 6
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.91 E-value=1.9e-24 Score=189.38 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=104.3
Q ss_pred EEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeC-CCeEEEEEEEecCCC--CCCCcccccCHHHHHHHH---hhCCCcc
Q 017219 201 LHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLK-NRVFHITTLIIPKQE--STSDSCQTLNEEEIFEVQ---DRLSLFP 274 (375)
Q Consensus 201 V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~-~~~l~VT~lfpppq~--~ts~s~~~~DpeEif~~q---~~rgLei 274 (375)
|.|++.++.+|++||+++. |.|+||+|+|+.. ++.+.|+.+++.+|. .++..+|.+|++++++++ +.+|+.+
T Consensus 1 l~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAY--PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHT--TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEE
T ss_pred CEeCHHHHHHHHHHHHhcC--CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeE
Confidence 4589999999999999998 9999999999987 677899999999987 666778899988887774 4679999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCC-CceeEEEeeC
Q 017219 275 LGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTS-SPHGIFHLSD 327 (375)
Q Consensus 275 VGWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts-~~lrAFRLsd 327 (375)
||||||||.++++||.+|+.+ ++.+++++||+++..+. ..++|||+++
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEE-----ATFPGFTYVIVSVRDGAPEALTAWALAP 127 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHT-----CCCTTSEEEEEEEETTEEEEEEEEEECT
T ss_pred EEEEeCCCCCCCCCCHHHHHh-----hhcCCCeEEEEECCCCCccEEEEEEEeC
Confidence 999999999999999999863 35689999999986653 4689999965
No 7
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.91 E-value=3.5e-25 Score=212.11 Aligned_cols=142 Identities=20% Similarity=0.326 Sum_probs=123.1
Q ss_pred CceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeC---CCeEEEEEEEecCCCCCCCcccccCHHHHHHHHhhCCCc
Q 017219 197 EYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLK---NRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLF 273 (375)
Q Consensus 197 ~~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~---~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~~rgLe 273 (375)
..++++||++++++|+..|+.++ |+||+|+|+.. .++++|++++++||.++.++|.+.++....+++ .+|+
T Consensus 37 ~~~t~vlPknllkkFi~IADlrT----q~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe 110 (273)
T 2p8r_A 37 TGYTYILPKNILKKFITISDLRT----QIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFE 110 (273)
T ss_dssp SSCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSE
T ss_pred CccEEEecHHHHHHHHHHhhccc----eEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--cccc
Confidence 34689999999999999999875 99999999985 368999999999999999999887743333333 8999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhhc---C--CCeEEEEEcCCCCCCceeEEEeeCCCCCceeeccc-----ccCCc
Q 017219 274 PLGWIHTHPSQTCFMSSVDLHTHYSYQIM---L--PEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQ-----QRGFH 343 (375)
Q Consensus 274 iVGWYHSHP~~~afPSstDL~tq~sYQ~~---~--PeaVaLIvSP~~ts~~lrAFRLsdp~Gm~~~~~c~-----~~gFh 343 (375)
++||+||||...+++|+.|+++|++||.+ + +++|+|+|+++.++..++||||++ .|++|.++=+ ..|||
T Consensus 111 ~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~Gf~ 189 (273)
T 2p8r_A 111 PLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTP-SGYEWGKANTDKGNNPKGYM 189 (273)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHHCCCCSSCCTTCC
T ss_pred ccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcCh-HHhhhhhhccccccCCCCCC
Confidence 99999999999999999999999999985 4 499999999998888899999998 5999876544 35788
Q ss_pred cC
Q 017219 344 PH 345 (375)
Q Consensus 344 ph 345 (375)
|+
T Consensus 190 p~ 191 (273)
T 2p8r_A 190 PT 191 (273)
T ss_dssp GG
T ss_pred cc
Confidence 87
No 8
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.80 E-value=7.7e-19 Score=158.04 Aligned_cols=125 Identities=15% Similarity=0.221 Sum_probs=102.1
Q ss_pred CceEEEECHHHHHHHHHHHHhc----CCCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCC--cccccCHHHHHHHH---
Q 017219 197 EYQHLHVPVNMMQDFLRLAQAN----TEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSD--SCQTLNEEEIFEVQ--- 267 (375)
Q Consensus 197 ~~~~V~Ip~~ll~kILkHA~s~----t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~--s~~~~DpeEif~~q--- 267 (375)
+...|.|...++.+|++||.+. . +.|+||+|+|...++.++|+++|++|+..+.. ..++.|++.+.++.
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~--~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~ 83 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGN--QKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF 83 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTC--CSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHH
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCC--CcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHH
Confidence 5678999999999999998764 4 89999999999988899999999999865433 34567765433332
Q ss_pred h--hCCCccEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCC--CceeEEEeeC
Q 017219 268 D--RLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTS--SPHGIFHLSD 327 (375)
Q Consensus 268 ~--~rgLeiVGWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts--~~lrAFRLsd 327 (375)
. .+++.+||||||||.. |..|+..|..||...+.+++||+||..+. ..++||++.+
T Consensus 84 ~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~ 143 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVE 143 (187)
T ss_dssp HTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEE
T ss_pred HHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEec
Confidence 1 3589999999999984 77888888889988999999999998753 3479999986
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.79 E-value=1.7e-19 Score=152.87 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=82.9
Q ss_pred EEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHH-HHhhCCCccEEEE
Q 017219 200 HLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFE-VQDRLSLFPLGWI 278 (375)
Q Consensus 200 ~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~-~q~~rgLeiVGWY 278 (375)
+|.|++.++++|++||+++. |.|+||+|+|+.. .|+.++++++.+++.+ ..|. .+..+++.+||||
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~--P~E~cGlL~g~~~----~v~~~~~~p~~~~~~~-------~~f~~~~~~~~~~ivG~~ 69 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAH--PDEFIALLSGSKD----VMDELIFLPFVSGSVS-------AVIHLDMLPIGMKVFGTV 69 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHT--TSCCEEEEEESTT----EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHhcC--CCeeEEEEecccC----EEEEEEECCCCCCCcC-------ceeeeeeccCCCEEEEEE
Confidence 47899999999999999998 9999999999874 7888898885443221 1121 2455899999999
Q ss_pred eCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCCceeEEEe
Q 017219 279 HTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHL 325 (375)
Q Consensus 279 HSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts~~lrAFRL 325 (375)
||||.++++||.+|+.++ .+++.++||+++..+...+++|+.
T Consensus 70 HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~f~~ 111 (124)
T 1oi0_A 70 HSHPSPSCRPSEEDLSLF-----TRFGKYHIIVCYPYDENSWKCYNR 111 (124)
T ss_dssp EEESSSCCSCCHHHHHHH-----HHSCSEEEEEETTCCTTCEEEEET
T ss_pred EECcCCCCccCHHHHHhh-----hcCCCEEEEEEccCCCceEEEEec
Confidence 999999999999999863 358999999998765455677766
No 10
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.7e-18 Score=173.78 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=116.6
Q ss_pred ceEEEECHHHHHHHHHHHHhcCCCCcceEEEeeeeeC-C--CeEEEEEEEecCCCCCCCccccc--CHHHHHHHHhhCCC
Q 017219 198 YQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLK-N--RVFHITTLIIPKQESTSDSCQTL--NEEEIFEVQDRLSL 272 (375)
Q Consensus 198 ~~~V~Ip~~ll~kILkHA~s~t~~P~EvCGLLlG~~~-~--~~l~VT~lfpppq~~ts~s~~~~--DpeEif~~q~~rgL 272 (375)
-..+.||++++++|+..|+.++ |+||+|+|... + ++++|++++.+||.++.++|.+. ...++|. ...+|
T Consensus 348 ~~tyVlPkNLLkKFI~IADlrT----QicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~--~l~dL 421 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLP--DTEGL 421 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCSSS----CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTST--TCTTC
T ss_pred CcEEEccHHHHHHHHHHhhccc----eeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCcccccc--ccccC
Confidence 4679999999999999999876 99999999986 3 68999999999999999999775 1112211 25899
Q ss_pred ccEEEEeCCCCCCCCCCHHHHHHHHHHhhcC-CCeEEEEEcCCCCCCceeEEEeeCCCCCceeeccccc
Q 017219 273 FPLGWIHTHPSQTCFMSSVDLHTHYSYQIML-PEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQR 340 (375)
Q Consensus 273 eiVGWYHSHP~~~afPSstDL~tq~sYQ~~~-PeaVaLIvSP~~ts~~lrAFRLsdp~Gm~~~~~c~~~ 340 (375)
+++||+||||...+|+|+.|+++|.++.... ..+|.|.|+.+.++..+.||+|++ +|++|.+.=++.
T Consensus 422 e~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftPGS~SLsAy~LT~-eGyeWG~~N~d~ 489 (565)
T 3sbg_A 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDI 489 (565)
T ss_dssp EEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTTTTC
T ss_pred EecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecCCceEEEEEecCH-hHHHHHhhcccc
Confidence 9999999999999999999999999886643 488999999999999999999998 599999876654
No 11
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.64 E-value=9.3e-16 Score=134.01 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=87.2
Q ss_pred CceEEEECHHHHHHHHHHHHhcC---CCCcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHHH---Hh--
Q 017219 197 EYQHLHVPVNMMQDFLRLAQANT---EKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEV---QD-- 268 (375)
Q Consensus 197 ~~~~V~Ip~~ll~kILkHA~s~t---~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~---q~-- 268 (375)
+...|.|...++.+|++|+.+.. ..+.+++|+|+|...++.++|+++|++|..++.... ..|.+.+.++ ..
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~-~~d~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDET-VINKDYYNKKEQQYKQV 82 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEE-EECHHHHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCce-eecHHHHHHHHHHHHHh
Confidence 45779999999999999997631 126899999999999899999999999986554433 4554333332 11
Q ss_pred hCCCccEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCCc
Q 017219 269 RLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSP 319 (375)
Q Consensus 269 ~rgLeiVGWYHSHP~~~afPSstDL~tq~sYQ~~~PeaVaLIvSP~~ts~~ 319 (375)
..++.+||||||||. ++..|+..|..|+...+..|+|++||..+..+
T Consensus 83 ~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g 129 (141)
T 4e0q_A 83 FSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRSVD 129 (141)
T ss_dssp STTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCCCT
T ss_pred CCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccCCC
Confidence 368999999999974 88999999999999999999999999886543
No 12
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=8.8e-10 Score=108.19 Aligned_cols=126 Identities=14% Similarity=0.247 Sum_probs=91.7
Q ss_pred ceEEEECHHHHHHHHHHHHh-cCCCCcceEEEeeeeeCCCeEEEEEEEecCCCCC--CCcccccCHHHH---HHHHh--h
Q 017219 198 YQHLHVPVNMMQDFLRLAQA-NTEKNLETCGVLAGSLKNRVFHITTLIIPKQEST--SDSCQTLNEEEI---FEVQD--R 269 (375)
Q Consensus 198 ~~~V~Ip~~ll~kILkHA~s-~t~~P~EvCGLLlG~~~~~~l~VT~lfpppq~~t--s~s~~~~DpeEi---f~~q~--~ 269 (375)
...|.|-..++..|++|+.+ ....+..++|.|+|...++.++|+++|++|-..+ .......|.+.+ ++... .
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 35799999999999999875 2223568999999999999999999999886432 223334554322 22211 3
Q ss_pred CCCccEEEEeCCCCCCCCCCHHHHHHHHHHhhcC-CCeEEEEEcCCCCCC--ceeEEEeeC
Q 017219 270 LSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIML-PEAVAIVMAPTDTSS--PHGIFHLSD 327 (375)
Q Consensus 270 rgLeiVGWYHSHP~~~afPSstDL~tq~sYQ~~~-PeaVaLIvSP~~ts~--~lrAFRLsd 327 (375)
.++.+||||||+|. ++..|+..|..|+... +..+.+++++..... .++||.-..
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~ 141 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIE 141 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEE
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeeh
Confidence 68999999999764 7778888888888765 467888888766543 369997654
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=94.34 E-value=0.33 Score=41.33 Aligned_cols=74 Identities=27% Similarity=0.261 Sum_probs=51.3
Q ss_pred CcceEEEeeeeeCCCeEEEEEEEecCCCCCCCcccccCHHHHHHHHhhCCCccEEEEeCCCCCCCCCCHHHHHHHHHHh
Q 017219 222 NLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQ 300 (375)
Q Consensus 222 P~EvCGLLlG~~~~~~l~VT~lfpppq~~ts~s~~~~DpeEif~~q~~rgLeiVGWYHSHP~~~afPSstDL~tq~sYQ 300 (375)
+.|...+|+=...++.+....++. ++ ......+++|+|+.+...+..-|...|-||++.+.||..|+..-...+
T Consensus 23 ~~E~f~vl~Ld~~n~li~~~~l~~----Gt-~~~~~v~pRei~~~Al~~~A~~vIl~HNHPSG~~~PS~~D~~~T~~l~ 96 (126)
T 2qlc_A 23 TKEHLFVLFLSTKNQILRHETITI----GT-LTASLIHPREIFKAAIRESAHSIILVHNHPSGDVQPSNADKQVTSILK 96 (126)
T ss_dssp TSCEEEEEEECTTCBEEEEEEEEE----SS-CCGGGCCHHHHHHHHHHTTCSEEEEEEECSSSCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCCEEEEEEecC----CC-CCcEeecHHHHHHHHHHcCCcEEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 678766555222334444444442 22 223456899999988888889999999999999999999997544433
Done!