Citrus Sinensis ID: 017219

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MACSNKKLNLRVDSKQPSSMEIQSSWRNSTQVSSSSSSQIDKQFQKLSVNIPLPKKETLSRHSFLGPHGLRGQWLGPSAEIKVHYPSSTDLTTTEDISLNQAGQYGIVPIKDGDPGGAISTMESVLSLDDGRWLHPAEKSCPPMVHEAREDPFQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR
cccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCEEEEcHHHHHHHHHHHHHcccccEEEEEEEccEEcccEEEEEEEEEccccccccccccccHHHHHHHHHHccccccccECcccccccccccHHHHHHHHHHcccccEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEcc
*******************************************************KETLSRHSFLGPHGLRGQWLGPSAEIKVHYPSSTDL********************************************************************************************************NEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQES*****QTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQ***F**HEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR
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MACSNKKLNLRVDSKQPSSMEIQSSWRNSTQVSSSSSSQIDKQFQKLSVNIPLPKKETLSRHSFLGPHGLRGQWLGPSAEIKVHYPSSTDLTTTEDISLNQAGQYGIVPIKDGDPGGAISTMESVLSLDDGRWLHPAEKSCPPMVHEAREDPFQFVSTKQPSPPPVLAQVQQASIPPSRVADPRPGPAQDISLNTNEYQHLHVPVNMMQDFLRLAQANTEKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVFMNAKLQFDVVDLR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
AMSH-like ubiquitin thioesterase 3 Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains, but is not implicated in protein degradation by the 26S proteasome, deneddylation, or desumoylation. Required for intracellular trafficking (e.g. trafficking from the Golgi to the vacuole and the vacuolar trafficking of endocytosed cargo), endocytosis and vacuole biogenesis.probableQ5PNU3

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3RZV, chain A
Confidence level:very confident
Coverage over the Query: 196-375
View the alignment between query and template
View the model in PyMOL