BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017220
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGQ0|VOZ1_ARATH Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1
Length = 486
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/385 (52%), Positives = 242/385 (62%), Gaps = 23/385 (5%)
Query: 2 KPQP-DVQGHPGTMMAFQEDYVVNNELQGHCFQGFDKCEDSASGLHNPTVGISGLTTQLD 60
KP+P D G FQ Y + H D C+D + N G + L
Sbjct: 109 KPEPADQNLEAGKAAVFQRGYNLVQGKSEHGLPLVDNCKDLSLAAGNNFDGTAPLEYHQQ 168
Query: 61 YSHLIFRQELENLLLDGVNGTEECEKDIGP----NSLPIIHPPPSAFMGPKCALWDCTRP 116
Y +QE E G N GP N +P I PPPSAF+GPKCALWDC RP
Sbjct: 169 YD---LQQEFEPNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRP 225
Query: 117 ALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPH 176
A G + F+DYCS+FHA LA +E PG+ PV+RPGGI LKD LLF A++A+A GK VGIP
Sbjct: 226 AQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPE 285
Query: 177 CEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHE 236
CEGAAT KSPWNA ELFDL +LE ET+REWLFFDK R+AFESG RKQRSLPD++GRGWHE
Sbjct: 286 CEGAATAKSPWNAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHE 345
Query: 237 SRKLVMKEFGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVK 296
SRK +M EFGG KRSYYMDPQP EWHLYEYEI DA ALYRLE+KL KK+ K K
Sbjct: 346 SRKQIMVEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGK 405
Query: 297 VTKDSLADLQKKMGRLTADVPVD---------NKSSFKGKIETNGKVDSANVNSSQNEMT 347
V+ DS+ADLQK+MGRLTA+ P + NK KG+ + + KV + NV QN +
Sbjct: 406 VSNDSVADLQKQMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATGNV---QNTVE 462
Query: 348 SATEILHHGSSSPYKYLADNSADYY 372
A + +G + YL N +DYY
Sbjct: 463 QAND---YGVGEEFNYLVGNLSDYY 484
>sp|Q9SLB9|VOZ2_ARATH Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2
Length = 450
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 223/306 (72%), Gaps = 7/306 (2%)
Query: 19 EDYVVNNELQG----HCFQGFDKCEDSASGLHNPTVGIS-GLTTQLDYSHLIFRQELENL 73
ED + + E G + ++GFD +SA H+ + + +T+Q DY RQEL+N
Sbjct: 136 EDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDNS 195
Query: 74 LLDGVNGTEECEKDIGPNSLPIIHPPPSAFMGPKCALWDCTRPALGSELFEDYCSNFHAT 133
++ +EE + ++ + PPSAF+GPKCALWDCTRPA GSE + DYCSN+H T
Sbjct: 196 PSTKLDSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLDYCSNYHGT 255
Query: 134 LAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELF 193
LA++EDSPG PVLRPGGI+LKD+LL +A+ A+ QGK VGIP CEGA TK PWNA ELF
Sbjct: 256 LALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELF 315
Query: 194 DLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKLVMKEFGGQKRSYY 253
L L+EGETIREWLFFDK R+A++SG RKQRSLPD+SGRGWHESRK +MKE GQKRSYY
Sbjct: 316 HLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYY 375
Query: 254 MDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVKVTKDSLADLQKKMG--R 311
MDPQP EWHL+EY+I DA ALYRLE+K+ + KKSPK K++KD LADLQKKMG +
Sbjct: 376 MDPQPPGPFEWHLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADLQKKMGQFK 435
Query: 312 LTADVP 317
+ +D P
Sbjct: 436 VASDKP 441
>sp|Q01202|MYSP_BRUMA Paramyosin OS=Brugia malayi PE=2 SV=2
Length = 880
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 274 FDAYALYRLEVK-LASEKKSPKV------KVTKDSLADLQKKMGRLTADVPVDNK-SSFK 325
D YAL + +V L++E + KV + K + DL++ GR+T V V+N ++ K
Sbjct: 601 LDQYALAQRKVSALSAELEECKVALDNAIRARKQAEIDLEEANGRITDLVSVNNNLTAIK 660
Query: 326 GKIETNGKVDSANVNSSQNEMTSATEILHHGSSSPYKYLAD 366
K+ET ++++Q ++ AT+ LH + LAD
Sbjct: 661 NKLET-------ELSTAQADLDEATKELHAADERANRALAD 694
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 245 FGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVKVTKDSLAD 304
F K+SY M P P D ++W Y EII + + + L+V +E + K+ + L +
Sbjct: 454 FKQAKKSYPMFPAPEDRIKWDEYG-EIIKPEDFLVPELQV---TEDEKTKL---ESGLTN 506
Query: 305 LQKKMGRLTADVP---VDNKSSFKGK-----IETNGKVDSANVNSSQNEMTSATEILHHG 356
+ M + +DVP V S + K I+ G+ D ++ N+M I+ HG
Sbjct: 507 GDEPMDQDLSDVPTKCVSTTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHG 566
Query: 357 SSSPYKYLAD 366
+ LA+
Sbjct: 567 PPDATQDLAE 576
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 245 FGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVKVTKDSLAD 304
F K+SY M P P + ++W Y EII + + + L+ A+E++ K+ + L +
Sbjct: 454 FKQAKKSYPMFPAPEERIKWDEYG-EIIKPEDFLVPELQ---ATEEEKSKL---ESGLTN 506
Query: 305 LQKKMGRLTADVP---VDNKSSFKGK-----IETNGKVDSANVNSSQNEMTSATEILHHG 356
++ M + +DVP V S + K I+ G+ D ++ N+M I+ HG
Sbjct: 507 GEEPMDQDLSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHG 566
Query: 357 SSSPYKYLAD 366
+ LA+
Sbjct: 567 PPEASQDLAE 576
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,492,681
Number of Sequences: 539616
Number of extensions: 6578413
Number of successful extensions: 11066
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11056
Number of HSP's gapped (non-prelim): 16
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)