Query 017220
Match_columns 375
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 06:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02365 NAM: No apical merist 94.8 0.00094 2E-08 54.3 -5.4 100 161-271 17-128 (129)
2 PLN02524 S-adenosylmethionine 35.3 57 0.0012 33.0 4.5 69 220-289 112-188 (355)
3 TIGR00535 SAM_DCase S-adenosyl 34.8 48 0.001 33.2 3.9 49 220-270 106-157 (334)
4 COG0113 HemB Delta-aminolevuli 28.5 24 0.00052 35.6 0.7 13 244-257 218-230 (330)
5 PF05596 Taeniidae_ag: Taeniid 23.5 28 0.00061 27.5 0.1 20 237-256 8-27 (64)
6 PF05385 Adeno_E4: Mastadenovi 22.2 37 0.0008 29.7 0.6 9 202-210 53-61 (109)
7 KOG2345 Serine/threonine prote 21.4 45 0.00098 33.3 1.1 37 184-220 201-249 (302)
8 PF12386 Peptidase_C71: Pseudo 19.7 25 0.00055 31.8 -0.9 37 145-181 93-129 (142)
9 KOG1065 Maltase glucoamylase a 19.0 1.4E+02 0.0031 33.3 4.2 80 88-176 399-501 (805)
10 PF03445 DUF294: Putative nucl 18.5 60 0.0013 27.4 1.1 34 155-188 82-118 (138)
No 1
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []. NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.
Probab=94.78 E-value=0.00094 Score=54.27 Aligned_cols=100 Identities=24% Similarity=0.563 Sum_probs=53.8
Q ss_pred HHHHhhhcCcccC----cccccCCcccCCCCChhhhhhhhhccchhhhhhhhhhhhhhhhhcccccccCCCCCCCCChhh
Q 017220 161 NAVNARAQGKRVG----IPHCEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHE 236 (375)
Q Consensus 161 aAL~Ak~qGk~VG----IP~CeGAat~KsPWNA~elFdl~~legEtiREWLFFDkpRRAfeSGnRKQRslPDy~GRGWHE 236 (375)
.-|..|+.|...- |++| -.-+..||.-|+.++. ++ +||+||=+.++....|+|+.|+-. |=-||.
T Consensus 17 ~yL~~k~~g~~~~~~~~i~~~--Diy~~~P~~L~~~~~~----~~--~~~yFF~~~~~~~~~~~r~~R~~~---~G~Wk~ 85 (129)
T PF02365_consen 17 HYLRPKILGEPLPCEDVIHDV--DIYSAHPWELPAKFKG----GD--EEWYFFSPRKKKYPNGGRPNRVTG---GGYWKS 85 (129)
T ss_dssp CTHHHHHTT-HHCS-CHSEE----GGGS-GGGCHHHSSS-----S--SEEEEEEE----------S-EEET---TEEEEE
T ss_pred HHHHHHhcCCCCCcccceeec--ccCccChHHhhhhccC----CC--ceEEEEEecccccCCccccccccc---ceEEee
Confidence 4577778777522 4444 5667799988852222 22 399999999999999999999755 444997
Q ss_pred hHH--HHHH---HhcCcccc--cccCCCC-CCCcceeeEEEEe
Q 017220 237 SRK--LVMK---EFGGQKRS--YYMDPQP-SDGLEWHLYEYEI 271 (375)
Q Consensus 237 SRK--qvMk---e~gGlKrS--YYMDPQP-~~~~EWHlyEYei 271 (375)
+.+ .|+. ..-|.||+ ||.-.++ ...-.|-|.||.|
T Consensus 86 ~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L 128 (129)
T PF02365_consen 86 TGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSL 128 (129)
T ss_dssp ECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE
T ss_pred cccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEe
Confidence 665 3333 23456664 6643333 3356899999987
No 2
>PLN02524 S-adenosylmethionine decarboxylase
Probab=35.30 E-value=57 Score=32.97 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=48.5
Q ss_pred cccccCCCCCCC---CChhhhHHHHHHHhcCc---ccccccCCCCCCCcceeeEEEEeeCcc--eeeeeeeeeeeccc
Q 017220 220 TRKQRSLPDHSG---RGWHESRKLVMKEFGGQ---KRSYYMDPQPSDGLEWHLYEYEIIGFD--AYALYRLEVKLASE 289 (375)
Q Consensus 220 nRKQRslPDy~G---RGWHESRKqvMke~gGl---KrSYYMDPQP~~~~EWHlyEYein~~d--a~ALYRLE~K~~d~ 289 (375)
.||...+|+-.- |.|.|-=..+=+-||++ -++|-|-+- .+..-||||-..-.... .-.-|.||+=-.+-
T Consensus 112 sRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~-~~~~hW~lY~a~~~~~~~~~~~d~TlEilMt~L 188 (355)
T PLN02524 112 TRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDP-DKGQKWHVYSASAHNSSNSNEPVYTLEMCMTGL 188 (355)
T ss_pred ecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCC-CCCCceEEEeCCCcccccCCCCCeEEEEEccCC
Confidence 689999999887 99999988888888864 577878542 24677999976543322 22456677644433
No 3
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=34.83 E-value=48 Score=33.25 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=36.2
Q ss_pred cccccCCCCCCC---CChhhhHHHHHHHhcCcccccccCCCCCCCcceeeEEEE
Q 017220 220 TRKQRSLPDHSG---RGWHESRKLVMKEFGGQKRSYYMDPQPSDGLEWHLYEYE 270 (375)
Q Consensus 220 nRKQRslPDy~G---RGWHESRKqvMke~gGlKrSYYMDPQP~~~~EWHlyEYe 270 (375)
.||...+|+-.- |.|.|-=..+=+-|++. ++|=|-+. .+..-||||-..
T Consensus 106 sRksf~fP~~Q~~pH~sf~eEV~~L~~~F~~g-~AY~~G~~-~~~~~WhlY~~~ 157 (334)
T TIGR00535 106 SRGCFLFPCAQPAIHRNFSEEVAYLNKFFGNG-KAYVVGDP-AKPQKWHLYVAE 157 (334)
T ss_pred ecccccCcccCCCcCCCHHHHHHHHHHhcCCC-ceEEeCCC-CCCCceEEEeCC
Confidence 588999998775 79999876665557764 78888543 344679999754
No 4
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=28.54 E-value=24 Score=35.58 Aligned_cols=13 Identities=46% Similarity=1.134 Sum_probs=11.2
Q ss_pred HhcCcccccccCCC
Q 017220 244 EFGGQKRSYYMDPQ 257 (375)
Q Consensus 244 e~gGlKrSYYMDPQ 257 (375)
.||+ ||||.|||-
T Consensus 218 ~~gd-rktYQmDpa 230 (330)
T COG0113 218 KFGD-RKTYQMDPA 230 (330)
T ss_pred ccCC-cceeccCCc
Confidence 5777 999999995
No 5
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=23.48 E-value=28 Score=27.52 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.3
Q ss_pred hHHHHHHHhcCcccccccCC
Q 017220 237 SRKLVMKEFGGQKRSYYMDP 256 (375)
Q Consensus 237 SRKqvMke~gGlKrSYYMDP 256 (375)
-+|.|||..|=.++.||.||
T Consensus 8 ~~k~~kK~i~~v~~FF~~DP 27 (64)
T PF05596_consen 8 DKKSVKKWIEEVRNFFYEDP 27 (64)
T ss_pred hHHhHHHHHHHHHHHhccCc
Confidence 36889999999999999998
No 6
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=22.22 E-value=37 Score=29.69 Aligned_cols=9 Identities=56% Similarity=1.479 Sum_probs=7.8
Q ss_pred hhhhhhhhh
Q 017220 202 TIREWLFFD 210 (375)
Q Consensus 202 tiREWLFFD 210 (375)
.+||||||.
T Consensus 53 ~LrEWLy~a 61 (109)
T PF05385_consen 53 GLREWLYFA 61 (109)
T ss_pred HHHHHHHHH
Confidence 489999995
No 7
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.45 E-value=45 Score=33.34 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCCCChhhhhhhhhcc-----------chhhhhhhhhhhh-hhhhhccc
Q 017220 184 KSPWNATELFDLALLE-----------GETIREWLFFDKH-RKAFESGT 220 (375)
Q Consensus 184 KsPWNA~elFdl~~le-----------gEtiREWLFFDkp-RRAfeSGn 220 (375)
--|+-|||||++.... |-|+-+-+|+.-| -|++++|.
T Consensus 201 t~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~Gg 249 (302)
T KOG2345|consen 201 TIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGG 249 (302)
T ss_pred CCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCC
Confidence 4699999999986532 6677788999888 57888875
No 8
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=19.74 E-value=25 Score=31.81 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=33.0
Q ss_pred ccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCc
Q 017220 145 PVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAA 181 (375)
Q Consensus 145 PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAa 181 (375)
=-||.+|-.|+||-.+.-.+|-..|..||.|-|+-..
T Consensus 93 ~~LRv~~~~~~~g~~W~y~sA~~~g~~v~a~~C~~G~ 129 (142)
T PF12386_consen 93 YRLRVKHKELTSGTNWIYPSATKDGRPVGAPWCMDGY 129 (142)
T ss_pred EEEEecceeccCCceeeeeeeeccCCccCCchhhcCc
Confidence 3589999999999999999999999999999998543
No 9
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=19.00 E-value=1.4e+02 Score=33.33 Aligned_cols=80 Identities=31% Similarity=0.412 Sum_probs=59.5
Q ss_pred CCCCCCCccCCCCCCcCCcccccccCCCCCCcchhhhhhhhhhhhhhh-------ccCC-----CCCCcccccCCCCCCC
Q 017220 88 IGPNSLPIIHPPPSAFMGPKCALWDCTRPALGSELFEDYCSNFHATLA-------VSED-----SPGLTPVLRPGGINLK 155 (375)
Q Consensus 88 ~~~~~Lp~i~ppPSafLgPKCALWDC~RPa~g~e~~~dYCs~~Ha~LA-------lneg-----~pG~~PVlRPgGI~LK 155 (375)
+|+.+|...+|.+.|| ||=.-| --.+||.+-+..||..+. +||. || +.|+++-|.+..|
T Consensus 399 g~~~~lg~vwP~~~~f-------pDftnp-~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~pp-~~~~~~~~~~~~~ 469 (805)
T KOG1065|consen 399 GSPKMLGEVWPGSTAF-------PDFTNP-AVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSPP-INPTLDNGDLYAK 469 (805)
T ss_pred CchhhhcccCCCcccc-------cccCCc-hHHHHHHHHHHhhcccCCccceEEECCCcccCCCCC-ccccccccccccc
Confidence 3556788888886654 677777 457899999999999988 5676 66 9999999999888
Q ss_pred c---hhhHHHHHhhh--------cCcccCccc
Q 017220 156 D---SLLFNAVNARA--------QGKRVGIPH 176 (375)
Q Consensus 156 D---g~LFaAL~Ak~--------qGk~VGIP~ 176 (375)
- --||.++.|++ .||+.+|+.
T Consensus 470 tyd~~~lyg~~~aiat~~a~~~v~~kr~~i~s 501 (805)
T KOG1065|consen 470 TYDTHNLYGYSEAIATHQALVDVPGKRSFILS 501 (805)
T ss_pred chhhhhhHhHHHhhhhhccceecccccccccc
Confidence 4 45666666543 466666653
No 10
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=18.53 E-value=60 Score=27.41 Aligned_cols=34 Identities=29% Similarity=0.716 Sum_probs=25.1
Q ss_pred CchhhHHHHHhhhcC--cccCcccccCCcccCCC-CC
Q 017220 155 KDSLLFNAVNARAQG--KRVGIPHCEGAATTKSP-WN 188 (375)
Q Consensus 155 KDg~LFaAL~Ak~qG--k~VGIP~CeGAat~KsP-WN 188 (375)
.+...|.+++.++-. ..+|+|.|.|-..+..| |.
T Consensus 82 ~~~~~f~~~a~~~~~~L~~~G~~~C~g~vmasnp~W~ 118 (138)
T PF03445_consen 82 EDRAYFEAFAERLVDALDECGFPPCPGGVMASNPRWR 118 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCCCCcCccChhhC
Confidence 345567777666544 47899999999998876 65
Done!