Query 017220
Match_columns 375
No_of_seqs 29 out of 31
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 10:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 96.3 0.0011 3.8E-08 57.2 1.3 126 154-290 25-170 (171)
2 3ulx_A Stress-induced transcri 92.7 0.063 2.2E-06 46.7 3.0 121 155-286 24-169 (174)
3 1wyl_A NEDD9 interacting prote 60.7 6.3 0.00022 31.4 3.2 52 120-204 13-64 (116)
4 1bkr_A Spectrin beta chain; fi 60.6 7.5 0.00026 30.7 3.6 52 120-204 9-60 (109)
5 1bhd_A Utrophin; calponin homo 52.0 9.7 0.00033 30.5 3.0 53 120-205 14-66 (118)
6 1wyq_A Spectrin beta chain, br 51.3 11 0.00038 30.6 3.2 50 120-202 13-62 (127)
7 2d87_A Smoothelin splice isofo 49.2 12 0.00039 30.6 3.0 51 120-203 13-63 (128)
8 2d88_A Protein mical-3; all al 48.9 6.1 0.00021 31.8 1.3 53 120-205 15-67 (121)
9 1xrd_A LH-1, light-harvesting 30.4 15 0.0005 27.5 0.7 12 204-216 3-14 (52)
10 1c53_A Cytochrome C553; electr 29.5 51 0.0017 22.7 3.4 50 117-173 1-51 (79)
11 1c75_A Cytochrome C-553; heme, 26.6 48 0.0016 22.4 2.8 42 118-163 2-43 (71)
12 2d89_A EHBP1 protein; all alph 25.9 18 0.00063 28.8 0.6 53 120-205 15-67 (119)
13 3h0g_K DNA-directed RNA polyme 25.4 17 0.0006 30.1 0.4 15 188-202 2-16 (123)
14 1wku_A Alpha-actinin 3; calpon 21.5 72 0.0025 28.0 3.6 36 120-167 146-181 (254)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=96.26 E-value=0.0011 Score=57.19 Aligned_cols=126 Identities=25% Similarity=0.487 Sum_probs=76.9
Q ss_pred CCchhhHH-HHHhhhcCcccC---cccccCCcccCCCCChhhhhhhhhccchhhhhhhhhhhhhhhhhcccccccCCCCC
Q 017220 154 LKDSLLFN-AVNARAQGKRVG---IPHCEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDH 229 (375)
Q Consensus 154 LKDg~LFa-AL~Ak~qGk~VG---IP~CeGAat~KsPWNA~elFdl~~legEtiREWLFFDkpRRAfeSGnRKQRslPDy 229 (375)
-.|--|.. -|..|+.|...- |+++. .-...||+=|+.. . .|+ +||+||-.-.|....|.|..|.--
T Consensus 25 PTDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t~-- 94 (171)
T 1ut7_A 25 PTDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVAG-- 94 (171)
T ss_dssp CCHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEET--
T ss_pred CChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccCC--
Confidence 35666665 488999998765 44443 4567899877753 2 344 799999988889999999999751
Q ss_pred CCCChhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeEEEEeeCc---------ceeeeeeeeeeecccc
Q 017220 230 SGRGWHESRK--LVMK--EFGGQKRS--YYMDPQPSD-GLEWHLYEYEIIGF---------DAYALYRLEVKLASEK 290 (375)
Q Consensus 230 ~GRGWHESRK--qvMk--e~gGlKrS--YYMDPQP~~-~~EWHlyEYein~~---------da~ALYRLE~K~~d~k 290 (375)
+==||-.-+ .|+. ..-|.|++ ||..-.|.+ .-.|-|.||.|... +...|.|+-.|....+
T Consensus 95 -~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 95 -SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp -TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC----
T ss_pred -CCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCCC
Confidence 223765432 1221 23366764 687655543 57899999999754 5788999887765443
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=92.66 E-value=0.063 Score=46.68 Aligned_cols=121 Identities=27% Similarity=0.521 Sum_probs=74.0
Q ss_pred CchhhHH-HHHhhhcCcccC---cccccCCcccCCCCChhhhhhhhhccchhhhhhhhhhhhhhhhhcccccccCCCCCC
Q 017220 155 KDSLLFN-AVNARAQGKRVG---IPHCEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHS 230 (375)
Q Consensus 155 KDg~LFa-AL~Ak~qGk~VG---IP~CeGAat~KsPWNA~elFdl~~legEtiREWLFFDkpRRAfeSGnRKQRslPDy~ 230 (375)
.|--|.. -|.-|+.|...- |+++. .-...||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.--
T Consensus 24 TDeELV~~YL~~K~~g~~~~~~~I~evD--vy~~~Pw~Lp~~~---~-~g~--~ewYFFs~r~~ky~~g~R~nR~t~--- 92 (174)
T 3ulx_A 24 TDDELVEHYLCRKAAGQRLPVPIIAEVD--LYKFDPWDLPERA---L-FGA--REWYFFTPRDRKYPNGSRPNRAAG--- 92 (174)
T ss_dssp CHHHHHHHTHHHHHHTCCCSSSCCEECC--GGGSCGGGSGGGC---S-SCS--SEEEEEEECCC-----CCSCEEET---
T ss_pred CHHHHHHHHHHHHhcCCCCCcCeeeecc--cccCCchhhhhhh---c-cCC--ceEEEEeccccccCCCCCceeecC---
Confidence 4555554 577888887543 44443 3457899877653 2 354 699999877788999999988741
Q ss_pred CCChhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeEEEEeeCc--------------ceeeeeeeeeee
Q 017220 231 GRGWHESRK--LVMK--EFGGQKRS--YYMDPQPSD-GLEWHLYEYEIIGF--------------DAYALYRLEVKL 286 (375)
Q Consensus 231 GRGWHESRK--qvMk--e~gGlKrS--YYMDPQP~~-~~EWHlyEYein~~--------------da~ALYRLE~K~ 286 (375)
+==||-.-+ .|.. ..-|.||+ ||..-.|.+ .-.|-|.||.|... |...|.|+=.|.
T Consensus 93 ~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 93 NGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp TEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred CceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 223664322 2321 23467774 787666543 46799999999764 456777776554
No 3
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=60.68 E-value=6.3 Score=31.40 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=34.9
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+++|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 59 (116)
T 1wyl_A 13 LRWCQEQTAGY----------PGV-HV-SDLSSSWADGLALCALVYRL---------------------QPGLLEPSELQ 59 (116)
T ss_dssp HHHHHHHHHHS----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTSCCCSSGG
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCCCCHHHhc
Confidence 56888877643 343 23 33345899999999999886 46677766665
Q ss_pred chhhh
Q 017220 200 GETIR 204 (375)
Q Consensus 200 gEtiR 204 (375)
.++.+
T Consensus 60 ~~~~~ 64 (116)
T 1wyl_A 60 GLGAL 64 (116)
T ss_dssp GCCHH
T ss_pred cCCHH
Confidence 54443
No 4
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=60.61 E-value=7.5 Score=30.67 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=35.6
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.|||.-|.. -+|.. | +--.-+.+||..|.||.-+. +|+|+|.+-|.
T Consensus 9 L~W~q~~~~~----------y~~v~-v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 55 (109)
T 1bkr_A 9 LLWCQMKTAG----------YPNVN-I-HNFTTSWRDGMAFNALIHKH---------------------RPDLIDFDKLK 55 (109)
T ss_dssp HHHHHHHTTT----------CTTCC-C-SSSSGGGTTSHHHHHHHHHH---------------------CGGGCCGGGCC
T ss_pred HHHHHHHHcc----------CCCCC-C-CCCcccccccHHHHHHHHHH---------------------CcCCCCHHHcC
Confidence 4688765543 34432 3 44446789999999999886 58888887776
Q ss_pred chhhh
Q 017220 200 GETIR 204 (375)
Q Consensus 200 gEtiR 204 (375)
.+..+
T Consensus 56 ~~~~~ 60 (109)
T 1bkr_A 56 KSNAH 60 (109)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 65443
No 5
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=52.00 E-value=9.7 Score=30.48 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=36.8
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.||+.-|..| +|. + ++--.-+.+||..|.||.-+. +|+++|.+-|.
T Consensus 14 L~W~q~~~~~y----------~~v-~-v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 60 (118)
T 1bhd_A 14 LSWVRQTTRPY----------SQV-N-VLNFTTSWTDGLAFNAVLHRH---------------------KPDLFSWDKVV 60 (118)
T ss_dssp HHHHHHHHTTS----------TTC-C-CCSSSGGGTTSHHHHHHHHHH---------------------CGGGSCHHHHH
T ss_pred HHHHHHHhccC----------CCC-C-CCCCcccccCcHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 46888776544 342 2 344446789999999999886 58888887776
Q ss_pred chhhhh
Q 017220 200 GETIRE 205 (375)
Q Consensus 200 gEtiRE 205 (375)
.++.+|
T Consensus 61 ~~~~~~ 66 (118)
T 1bhd_A 61 KMSPIE 66 (118)
T ss_dssp HSCHHH
T ss_pred cCCHHH
Confidence 655443
No 6
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=51.26 E-value=11 Score=30.56 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.4
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.|||.-|..| +|. +| .--.-+.+||..|.||.-+. +|+|+|++-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~Af~aLih~~---------------------~P~lid~~~l~ 59 (127)
T 1wyq_A 13 LLWCQMKTAGY----------PNV-NV-HNFTTSWRDGLAFNAIVHKH---------------------RPDLLDFESLK 59 (127)
T ss_dssp HHHHHHHHHTS----------SSC-CC-SCSSTTSSSSHHHHHHHHHH---------------------CTTTCCTTTSC
T ss_pred HHHHHHHHhcC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 56888766543 343 23 33446889999999999886 47888877765
Q ss_pred chh
Q 017220 200 GET 202 (375)
Q Consensus 200 gEt 202 (375)
.+.
T Consensus 60 ~~~ 62 (127)
T 1wyq_A 60 KCN 62 (127)
T ss_dssp SSC
T ss_pred cCC
Confidence 443
No 7
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=49.18 E-value=12 Score=30.59 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=34.2
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+|+|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 59 (128)
T 2d87_A 13 LDWCRAKTRGY----------EHV-DI-QNFSSSWSDGMAFCALVHNF---------------------FPEAFDYGQLS 59 (128)
T ss_dssp HHHHHHHSSSC----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTTSCSTTSC
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCcCCHHHcC
Confidence 46898876654 222 23 33334889999999999886 47777777665
Q ss_pred chhh
Q 017220 200 GETI 203 (375)
Q Consensus 200 gEti 203 (375)
.+..
T Consensus 60 ~~~~ 63 (128)
T 2d87_A 60 PQNR 63 (128)
T ss_dssp SSCH
T ss_pred ccCH
Confidence 5443
No 8
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=48.88 E-value=6.1 Score=31.77 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=36.0
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.|||.-|..| +|.. ++--.-+.+||..|.||.-+. +|+|+|..-|.
T Consensus 15 L~W~q~~~~~y----------~~v~--v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 61 (121)
T 2d88_A 15 LGWCQRQTDGY----------AGVN--VTDLTMSWKSGLALCAIIHRY---------------------RPDLIDFDSLD 61 (121)
T ss_dssp HHHHHHHSTTS----------SSCC--CCCSSHHHHTSHHHHHHHHHH---------------------CTTTSCTTTSC
T ss_pred HHHHHHHhccC----------CCCC--CCCchhhccccHHHHHHHHHh---------------------CcCcCCHHHcC
Confidence 57898877543 3332 233334789999999999886 57778877776
Q ss_pred chhhhh
Q 017220 200 GETIRE 205 (375)
Q Consensus 200 gEtiRE 205 (375)
.++.+|
T Consensus 62 ~~~~~~ 67 (121)
T 2d88_A 62 EQNVEK 67 (121)
T ss_dssp TTCHHH
T ss_pred ccCHHH
Confidence 655443
No 9
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=30.39 E-value=15 Score=27.46 Aligned_cols=12 Identities=50% Similarity=1.049 Sum_probs=9.0
Q ss_pred hhhhhhhhhhhhh
Q 017220 204 REWLFFDKHRKAF 216 (375)
Q Consensus 204 REWLFFDkpRRAf 216 (375)
|=||.|| |||++
T Consensus 3 kIWl~fD-Prr~L 14 (52)
T 1xrd_A 3 RIWQLFD-PRQAL 14 (52)
T ss_dssp GGGGTSS-HHHHH
T ss_pred eEEEEEc-hhHHH
Confidence 5699998 77764
No 10
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.55 E-value=51 Score=22.69 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=31.1
Q ss_pred CCcchhhhhhhhhhhhhhhccCCCC-CCcccccCCCCCCCchhhHHHHHhhhcCcccC
Q 017220 117 ALGSELFEDYCSNFHATLAVSEDSP-GLTPVLRPGGINLKDSLLFNAVNARAQGKRVG 173 (375)
Q Consensus 117 a~g~e~~~dYCs~~Ha~LAlneg~p-G~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VG 173 (375)
++|-+.++. |.+.|..=. +|.. +..|-|+ +....-+.+.|.+-..|..-+
T Consensus 1 a~G~~ly~~-Ca~CHg~~g--~g~~~~~~P~L~----g~~~~~~~~~l~~~~~g~~~~ 51 (79)
T 1c53_A 1 ADGAALYKS-CVGCHGADG--SKQAMGVGHAVK----GQKADELFKKLKGYADGSYGG 51 (79)
T ss_pred CcHHHHHHH-HHhccCCCC--CCCCCCCCCcCC----CCCHHHHHHHHHHHHcCCCCC
Confidence 356677777 999997432 3433 4566664 234556777777666665443
No 11
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=26.63 E-value=48 Score=22.38 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=23.2
Q ss_pred CcchhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHH
Q 017220 118 LGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAV 163 (375)
Q Consensus 118 ~g~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL 163 (375)
.|-.-++.+|.+.|..=. +|. ..|-|+--+....+.-|+..+
T Consensus 2 ~G~~l~~~~C~~CHg~~g--~g~--~gP~L~~~~~~~~~~~l~~~i 43 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDL--TGA--SAPAIDKAGANYSEEEILDII 43 (71)
T ss_dssp CHHHHHHHHTHHHHCTTS--SCS--SSCCCTTGGGTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCC--CCC--CCCCCccccccCCHHHHHHHH
Confidence 466677889999997622 232 236555322233344444444
No 12
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.95 E-value=18 Score=28.83 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=35.5
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 199 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~qGk~VGIP~CeGAat~KsPWNA~elFdl~~le 199 (375)
+.||+.-|..| +|. .|--.. -+.+||..|.||.-+. .|+++|..-|.
T Consensus 15 L~W~~~~~~~y----------~~v-~v~nFs-~sw~dG~af~aLi~~~---------------------~P~lid~~~l~ 61 (119)
T 2d89_A 15 LVWCKEVTKNY----------RGV-KITNFT-TSWRNGLSFCAILHHF---------------------RPDLIDYKSLN 61 (119)
T ss_dssp HHHHHHHTTTC----------SSC-CCCCSS-HHHHTTHHHHHHHHHH---------------------CTTTSCGGGCC
T ss_pred HHHHHHHhccC----------CCC-CCCCcc-ccccccHHHHHHHHHH---------------------CcCcCChhhhc
Confidence 46888766543 332 233333 3788999999999886 57788887776
Q ss_pred chhhhh
Q 017220 200 GETIRE 205 (375)
Q Consensus 200 gEtiRE 205 (375)
.+..+|
T Consensus 62 ~~~~~~ 67 (119)
T 2d89_A 62 PQDIKE 67 (119)
T ss_dssp TTCSHH
T ss_pred ccCHHH
Confidence 655443
No 13
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.38 E-value=17 Score=30.13 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.6
Q ss_pred Chhhhhhhhhccchh
Q 017220 188 NATELFDLALLEGET 202 (375)
Q Consensus 188 NA~elFdl~~legEt 202 (375)
|||+-|++-||+||-
T Consensus 2 nap~~~e~f~l~ge~ 16 (123)
T 3h0g_K 2 NQPERYELIELMGLP 16 (123)
T ss_dssp CCCCGGGTSSCSSCC
T ss_pred CCCCccceeEeCCCc
Confidence 999999999998874
No 14
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=21.51 E-value=72 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=23.5
Q ss_pred chhhhhhhhhhhhhhhccCCCCCCcccccCCCCCCCchhhHHHHHhhh
Q 017220 120 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARA 167 (375)
Q Consensus 120 ~e~~~dYCs~~Ha~LAlneg~pG~~PVlRPgGI~LKDg~LFaAL~Ak~ 167 (375)
..||+.-|. |-+|. +|--. .-+++||..|.||..+.
T Consensus 146 L~W~~~~~~----------~y~~v-~v~nF-s~s~~DG~a~~aLi~~~ 181 (254)
T 1wku_A 146 LLWCQRKTA----------PYRNV-NVQNF-HTSWKDGLALCALIHRH 181 (254)
T ss_dssp HHHHHHHHT----------TCTTC-CCCSS-SGGGTTSHHHHHHHHHH
T ss_pred HHHHHHHcc----------CCCCC-cCCCC-ccchhhHHHHHHHHHHH
Confidence 467776552 33443 33222 33799999999999886
Done!