BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017221
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/320 (63%), Positives = 250/320 (78%), Gaps = 2/320 (0%)
Query: 58 EDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
+ I+HK+V VNG+NMH+AE G+GP ILFIHGFP LWYSWRHQ+ LA GYRAVAPDLRG
Sbjct: 9 KKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRG 68
Query: 118 YGDTD-APAEVPS-YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDR 175
YGDT AP PS ++ LH +EKVFVV HDWGALIAW+LCLFRPD+
Sbjct: 69 YGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDK 128
Query: 176 VKALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFL 235
VKALVNLSV F+ RNP M ++ KA+YG+D+YI RFQ PGEIEAEFA +G ++VLK+ L
Sbjct: 129 VKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKIL 188
Query: 236 TYRNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELN 295
TYR+P P + PKGKG PDA +AL SWLSEE++ YYA+K+E+ GFTG +NYYR + +N
Sbjct: 189 TYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPIN 248
Query: 296 WELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVGHF 355
WEL APWTGAQ+KVP KFIVG+ DL Y+ PG K+YI+ GGFKK VPLLEEV+V+EG HF
Sbjct: 249 WELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHF 308
Query: 356 INEEKPDEVNKHIYNFFQKF 375
+++E+P E++KHIY+F QKF
Sbjct: 309 VSQERPHEISKHIYDFIQKF 328
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/320 (63%), Positives = 250/320 (78%), Gaps = 2/320 (0%)
Query: 58 EDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
+ I+HK+V VNG+NMH+AE G+GP ILFIHGFP LWYSWRHQ+ LA GYRAVAPDLRG
Sbjct: 9 KKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRG 68
Query: 118 YGDTD-APAEVPS-YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDR 175
YGDT AP PS ++ LH +EKVFVV HDWGALIAW+LCLFRPD+
Sbjct: 69 YGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDK 128
Query: 176 VKALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFL 235
VKALVNLSV F+ RNP M ++ KA++G+D+YI RFQ PGEIEAEFA +G ++VLK+ L
Sbjct: 129 VKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKKIL 188
Query: 236 TYRNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELN 295
TYR+P P + PKGKG PDA +AL SWLSEE++ YYA+K+E+ GFTG +NYYR + +N
Sbjct: 189 TYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPIN 248
Query: 296 WELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVGHF 355
WEL APWTGAQ+KVP KFIVG+ DL Y+ PG K+YI+ GGFKK VPLLEEV+V+EG HF
Sbjct: 249 WELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHF 308
Query: 356 INEEKPDEVNKHIYNFFQKF 375
+++E+P E++KHIY+F QKF
Sbjct: 309 VSQERPHEISKHIYDFIQKF 328
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 170/319 (53%), Gaps = 17/319 (5%)
Query: 59 DIQHKVVNVN-GINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
D+ H V V + +H E G GP + HGFP WYSWR+QI ALA GYR +A D++G
Sbjct: 236 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 295
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YG++ AP E+ Y C+ + VF +GHDWG ++ WY+ LF P+RV+
Sbjct: 296 YGESSAPPEIEEY-CMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWYMALFYPERVR 353
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTY 237
A+ +L+ F P NPNM PL+ KA DY + FQEPG EAE Q + T K
Sbjct: 354 AVASLNTPFIPANPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRA 411
Query: 238 RNPGPLFLPK----GKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIE 293
+ L + K G F + P+ + +L ++EE++++Y +++K+GF G +N+YRN+E
Sbjct: 412 SDESVLSMHKVCEAGGLFVNSPE-EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 470
Query: 294 LNWELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVG 353
NW+ G +I +P + + D P ++ + +P L+ + E G
Sbjct: 471 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHI-EDCG 523
Query: 354 HFINEEKPDEVNKHIYNFF 372
H+ +KP EVN+ + +
Sbjct: 524 HWTQMDKPTEVNQILIKWL 542
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 168/313 (53%), Gaps = 17/313 (5%)
Query: 59 DIQHKVVNVN-GINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
D+ H V V + +H E G GP + HGFP WYSWR+QI ALA GYR +A D++G
Sbjct: 17 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 76
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YG++ AP E+ Y C+ + VF +GHDWG ++ WY+ LF P+RV+
Sbjct: 77 YGESSAPPEIEEY-CMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWYMALFYPERVR 134
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTY 237
A+ +L+ F P NPNM PL+ KA DY + FQEPG EAE Q + T K
Sbjct: 135 AVASLNTPFIPANPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRA 192
Query: 238 RNPGPLFLPK----GKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIE 293
+ L + K G F + P+ + +L ++EE++++Y +++K+GF G +N+YRN+E
Sbjct: 193 SDESVLSMHKVCEAGGLFVNSPE-EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 251
Query: 294 LNWELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVG 353
NW+ G +I +P + + D P ++ + +P L+ + E G
Sbjct: 252 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHI-EDCG 304
Query: 354 HFINEEKPDEVNK 366
H+ +KP EVN+
Sbjct: 305 HWTQMDKPTEVNQ 317
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 168/313 (53%), Gaps = 17/313 (5%)
Query: 59 DIQHKVVNVN-GINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
D+ H V V + +H E G GP + HGFP WYSWR+QI ALA GYR +A D++G
Sbjct: 32 DMSHGYVTVKPRVRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 91
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YG++ AP E+ Y C+ + VF +GHDWG ++ WY+ LF P+RV+
Sbjct: 92 YGESSAPPEIEEY-CMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWYMALFYPERVR 149
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTY 237
A+ +L+ F P NPNM PL+ KA DY + FQEPG EAE Q + T K
Sbjct: 150 AVASLNTPFIPANPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQNLSRT-FKSLFRA 207
Query: 238 RNPGPLFLPK----GKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIE 293
+ L + K G F + P+ + +L ++EE++++Y +++K+GF G +N+YRN+E
Sbjct: 208 SDESVLSMHKVCEAGGLFVNSPE-EPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNME 266
Query: 294 LNWELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVG 353
NW+ G +I +P + + D P ++ + +P L+ + E G
Sbjct: 267 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHI-EDCG 319
Query: 354 HFINEEKPDEVNK 366
H+ +KP EVN+
Sbjct: 320 HWTQMDKPTEVNQ 332
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 167/321 (52%), Gaps = 18/321 (5%)
Query: 59 DIQHKVVNVN-GINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
D+ H V V GI +H E G GP + HGFP W+SWR+QI ALA G+R +A D++G
Sbjct: 234 DVSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKG 293
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YGD+ +P E+ Y + + VF +GHDW ++ W + LF P+RV+
Sbjct: 294 YGDSSSPPEIEEYA-MELLCKEMVTFLDKLGIPQAVF-IGHDWAGVMVWNMALFYPERVR 351
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTY 237
A+ +L+ F P +P++ P++V +++ +Y + FQEPG EAE + + T F
Sbjct: 352 AVASLNTPFMPPDPDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEKNMSRTFKSFFRAS 410
Query: 238 RNPGPLFLPKGKGFG-----HPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNI 292
G + + K G P D ++ +EE++++Y +++K GF G +N+YRN
Sbjct: 411 DETGFIAVHKATEIGGILVNTPEDPNLS--KITTEEEIEFYIQQFKKTGFRGPLNWYRNT 468
Query: 293 ELNWELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGV 352
E NW+ G +I VP + + D+ +K+ +K +P L+ + E
Sbjct: 469 ERNWKWSCKGLGRKILVPALMVTAEKDIVLRPEMSKN------MEKWIPFLKRGHI-EDC 521
Query: 353 GHFINEEKPDEVNKHIYNFFQ 373
GH+ EKP EVN+ + + Q
Sbjct: 522 GHWTQIEKPTEVNQILIKWLQ 542
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 155/357 (43%), Gaps = 56/357 (15%)
Query: 62 HKVVNVNGINMHVAEKG----QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
H+++N G +H QGPL++ +HGFP WYSWRHQI ALA GYR VA D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YG + +Y E+ FVVGHDWGA +AW PDR
Sbjct: 71 YGRSSKYRVQKAYRI--KELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCA 128
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEI--EAEFA-QMGTETVLKE- 233
+V +SV F R P F DY++ PG + + FA Q G T ++E
Sbjct: 129 GVVGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEED 187
Query: 234 ------FLTYR-----------------------------NPGPLFLPKGKGFGHPPDAQ 258
LTY GPL + +G
Sbjct: 188 LRGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYP 247
Query: 259 IALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWELLAPWTGAQIKVPVKFIVGDL 318
+P+W +E D+ +Y ++E++GF G +++Y NI+ +W LA G + P FI G
Sbjct: 248 ETMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQY 307
Query: 319 DLTYNAPGT---KDYINKGGFKKAVPLLEEVIVMEGVGHFINEEKPDEVNKHIYNFF 372
D+ GT I + + +P ++ VGH+I +E P+E N+ + +F
Sbjct: 308 DV-----GTIWGAQAIERA--HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 357
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 155/357 (43%), Gaps = 56/357 (15%)
Query: 62 HKVVNVNGINMHVAEKG----QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
H+++N G +H QGPL++ +HGFP WYSWRHQI ALA GYR VA D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 118 YGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVK 177
YG + +Y E+ FVVGHDWGA +AW PDR
Sbjct: 65 YGRSSKYRVQKAYRI--KELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCA 122
Query: 178 ALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEI--EAEFA-QMGTETVLKE- 233
+V +SV F R P F DY++ PG + + FA Q G T ++E
Sbjct: 123 GVVGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEED 181
Query: 234 ------FLTYR-----------------------------NPGPLFLPKGKGFGHPPDAQ 258
LTY GPL + +G
Sbjct: 182 LRGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYP 241
Query: 259 IALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWELLAPWTGAQIKVPVKFIVGDL 318
+P+W +E D+ +Y ++E++GF G +++Y NI+ +W LA G + P FI G
Sbjct: 242 ETMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQY 301
Query: 319 DLTYNAPGT---KDYINKGGFKKAVPLLEEVIVMEGVGHFINEEKPDEVNKHIYNFF 372
D+ GT I + + +P ++ VGH+I +E P+E N+ + +F
Sbjct: 302 DV-----GTIWGAQAIERA--HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFL 351
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 35/320 (10%)
Query: 56 MEEDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDL 115
M + + +V+ +++ + G G +L +HG+P W H+I L + + VA DL
Sbjct: 1 MFTNFEQTIVDTTEARINLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDL 59
Query: 116 RGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXX-QEKVFVVGHDWGALIAWYLCLFRPD 174
RGYGD+ PA VP + E+ +VVGHD GA +A L L P
Sbjct: 60 RGYGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPH 119
Query: 175 RVKALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQ-EPGEIEAEFAQMGTETVLKE 233
RVK L L + P K + + YY F +P + E L++
Sbjct: 120 RVKKLALLDIA-----PTHKMYRTTDQEFATAYYHWFFLIQPDNLPETLIGANPEYYLRK 174
Query: 234 FLTYRNPGPLFLPKGKGF-GHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNI 292
L GK F P A S+ V + + +A T I
Sbjct: 175 CLE---------KWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAAT--------I 217
Query: 293 ELNWELLAPWTGAQIKVPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGV 352
+L + L +I PV + G+ + G K + ++A+ + + +
Sbjct: 218 DLEHDELD--MKQKISCPVLVLWGEKGII----GRKYDVLATWRERAIDVSGQSL---PC 268
Query: 353 GHFINEEKPDEVNKHIYNFF 372
GHF+ EE P+E + IYNF
Sbjct: 269 GHFLPEEAPEETYQAIYNFL 288
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 58 EDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRG 117
ED +H V + + +H +G GP +L +HG+P W+ W I LA Y + PDLRG
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAE-HYDVIVPDLRG 65
Query: 118 YGDTDAPA--EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDR 175
+GD++ P ++ Y+ EK +VVGHD+ A++ DR
Sbjct: 66 FGDSEKPDLNDLSKYSL--DKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDR 123
Query: 176 VKALVNLSVVFNPRNPNMKPL 196
V + +F+P P+ P+
Sbjct: 124 VIK----AAIFDPIQPDFGPV 140
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 76/187 (40%), Gaps = 5/187 (2%)
Query: 53 GSSMEEDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVA 112
SS E + V V G + ++G G +LF+HG P Y WR+ I + + GYRAVA
Sbjct: 2 ASSSEFPFAKRTVEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVA 61
Query: 113 PDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFR 172
PDL G GD+ P L + V V+ HDWG++I
Sbjct: 62 PDLIGXGDSAKPD---IEYRLQDHVAYXDGFIDALGLDDXVLVI-HDWGSVIGXRHARLN 117
Query: 173 PDRVKALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLK 232
PDRV A+ + P P + G + R + GE ET+L
Sbjct: 118 PDRVAAVAFXEALVPPALPXPS-YEAXGPQLGPLFRDLRTADVGEKXVLDGNFFVETILP 176
Query: 233 EFLTYRN 239
E R+
Sbjct: 177 EXGVVRS 183
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 64 VVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDA 123
++ + + VA KG GP +L +HG+P +W H+I + Y V DLRGYG++ A
Sbjct: 15 TLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAW-HRIAPRLAEDYSVVLADLRGYGESRA 73
Query: 124 -PAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
E Y+ E+ V+GHD GA + + L L P V A V+L
Sbjct: 74 LDEEGADYS--KAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSL 131
Query: 183 SVV 185
+VV
Sbjct: 132 TVV 134
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 56 MEEDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDL 115
M E + ++V+V + ++ G GP +L +HGFP + W ++ L + Y V DL
Sbjct: 1 MFEGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADL 59
Query: 116 RGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQ-EKVFVVGHDWGALIAWYLCLFRPD 174
RGYG + P P + E+ +VGHD G + L PD
Sbjct: 60 RGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPD 119
Query: 175 RVKALVNLSVV 185
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 118/327 (36%), Gaps = 55/327 (16%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
+ K + + G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 121 TDA-PAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
+D P ++V +V HDWG+ + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 180 VNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKE--FLTY 237
+ + P P Q+ +A +Q G E VL++ F+
Sbjct: 129 AYMEAIAMPIEWADFPE----------------QDRDLFQAFRSQAGEELVLQDNVFVEQ 172
Query: 238 RNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWE 297
PG + P LSE ++ Y + AG R L+W
Sbjct: 173 VLPGLILRP------------------LSEAEMAAYREPFLAAGEA------RRPTLSWP 208
Query: 298 LLAPWTG--AQIKVPVKFIVGDLD------LTYNA-PGTKDYINKGGFKKAVPLLEEVIV 348
P G A + + G L L NA PG F + P E+ V
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRDFCRTWPNQTEITV 268
Query: 349 MEGVGHFINEEKPDEVNKHIYNFFQKF 375
HFI E+ PDE+ I F ++
Sbjct: 269 --AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 118/327 (36%), Gaps = 55/327 (16%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
+ K + + G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 121 TDA-PAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
+D P ++V +V HDWG+ + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 180 VNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKE--FLTY 237
+ + P P Q+ +A +Q G E VL++ F+
Sbjct: 129 AYMEAIAMPIEWADFPE----------------QDRDLFQAFRSQAGEELVLQDNVFVEQ 172
Query: 238 RNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWE 297
PG + P LSE ++ Y + AG R L+W
Sbjct: 173 VLPGLILRP------------------LSEAEMAAYREPFLAAGEA------RRPTLSWP 208
Query: 298 LLAPWTG--AQIKVPVKFIVGDLD------LTYNA-PGTKDYINKGGFKKAVPLLEEVIV 348
P G A + + G L L NA PG F + P E+ V
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRDFCRTWPNQTEITV 268
Query: 349 MEGVGHFINEEKPDEVNKHIYNFFQKF 375
HFI E+ PDE+ I F ++
Sbjct: 269 --AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 118/327 (36%), Gaps = 55/327 (16%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
+ K + + G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 67
Query: 121 TDA-PAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
+D P ++V +V HDWG+ + + +RV+ +
Sbjct: 68 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 127
Query: 180 VNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKE--FLTY 237
+ + P P Q+ +A +Q G E VL++ F+
Sbjct: 128 AYMEAIAMPIEWADFPE----------------QDRDLFQAFRSQAGEELVLQDNVFVEQ 171
Query: 238 RNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWE 297
PG + P LSE ++ Y + AG R L+W
Sbjct: 172 VLPGLILRP------------------LSEAEMAAYREPFLAAGEA------RRPTLSWP 207
Query: 298 LLAPWTG--AQIKVPVKFIVGDLD------LTYNA-PGTKDYINKGGFKKAVPLLEEVIV 348
P G A + + G L L NA PG F + P E+ V
Sbjct: 208 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRDFCRTWPNQTEITV 267
Query: 349 MEGVGHFINEEKPDEVNKHIYNFFQKF 375
HFI E+ PDE+ I F ++
Sbjct: 268 --AGAHFIQEDSPDEIGAAIAAFVRRL 292
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 117/327 (35%), Gaps = 55/327 (16%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
+ K + + G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 121 TDA-PAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
+D P ++V +V HDWG+ + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 180 VNLSVVFNPRNPNMKPLQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKE--FLTY 237
+ + P P Q+ +A +Q G E VL++ F+
Sbjct: 129 AYMEAIAMPIEWADFPE----------------QDRDLFQAFRSQAGEELVLQDNVFVEQ 172
Query: 238 RNPGPLFLPKGKGFGHPPDAQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWE 297
PG + P LSE ++ Y + AG R L+W
Sbjct: 173 VLPGLILRP------------------LSEAEMAAYREPFLAAGEA------RRPTLSWP 208
Query: 298 LLAPWTG--AQIKVPVKFIVGDLD------LTYNA-PGTKDYINKGGFKKAVPLLEEVIV 348
P G A + + G L L NA PG F + P E+ V
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRDFCRTWPNQTEITV 268
Query: 349 MEGVGHFINEEKPDEVNKHIYNFFQKF 375
HFI E+ PDE+ I F +
Sbjct: 269 --AGAHFIQEDSPDEIGAAIAAFVXRL 293
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 56 MEEDIQHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDL 115
M E + ++V+V + ++ G GP +L +HGFP + W ++ L + Y V DL
Sbjct: 1 MFEGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADL 59
Query: 116 RGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQ-EKVFVVGHDWGALIAWYLCLFRPD 174
RGYG + P P + E+ +VGH G + L PD
Sbjct: 60 RGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPD 119
Query: 175 RVKALVNLSVV 185
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 81 PLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXX 140
P++L IHG +W+ LA+ GYR VAPDL G+G + V SY+ L
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSL--TFLAQ 84
Query: 141 XXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPRNPNMKPLQVFK 200
+ + +VGH GA++A + RP ++K L+ + + P + K V +
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPL-PAEESKKESAVNQ 143
Query: 201 AVYGDDYYICRFQEP 215
DY Q P
Sbjct: 144 LTTCLDYLSSTPQHP 158
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V+G+ +H + GQGPL++ +HGF WY W HQ+ + + +APDL G G ++ P
Sbjct: 16 EVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEPP 73
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V+G+ +H + GQGPL++ +HGF WY W HQ+ + + +APDL G G ++ P
Sbjct: 16 EVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEPP 73
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V+G+ +H + GQGPL++ +HGF WY W HQ+ + + +APDL G G ++ P
Sbjct: 16 EVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGLGQSEPP 73
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V +G ++ + G G +LF HG+PL W +Q+ L+S GYR +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
Y F +G G +A Y+ RV LV L
Sbjct: 64 WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG---GGDVARYIARHGSARVAGLVLLGA 120
Query: 185 VF-----NPRNPNMKPLQVF 199
V P P PL VF
Sbjct: 121 VTPIFGQKPDYPQGVPLDVF 140
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V +G ++ + G G +LF HG+PL W +Q+ L+S GYR +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
Y F +G G +A Y+ RV LV L
Sbjct: 64 WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG---GGDVARYIARHGSARVAGLVLLGA 120
Query: 185 VF-----NPRNPNMKPLQVF 199
V P P PL VF
Sbjct: 121 VTPLFGQKPDYPQGVPLDVF 140
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPS 129
IN + +EK ++F+HG Y WRH + + + R + PDL G G + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 90
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFN 187
Y L ++ +FV GHDWGA +A++ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNLPKKIIFV-GHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPS 129
IN + +EK ++F+HG Y WRH + + + R + PDL G G + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 91
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFN 187
Y L ++ +FV GHDWGA +A++ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNLPKKIIFV-GHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPS 129
IN + +EK ++F+HG Y WRH + + + R + PDL G G + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 90
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFN 187
Y L ++ +FV GHDWGA +A++ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNLPKKIIFV-GHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPS 129
IN + +EK ++F+HG Y WRH + + + R + PDL G G + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 91
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFN 187
Y L ++ +FV GHDWGA +A++ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNLPKKIIFV-GHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 59 DIQHKVVNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLR 116
+I+ + V G +M E G P++LF+HG P + WR+ I L S +APDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 117 GYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRV 176
G+G + P ++ H ++V DWG +A++L RPD V
Sbjct: 65 GFGQSGKP-DIAYRFFDHVRYLDAFIEQRGVT---SAYLVAQDWGTALAFHLAARRPDFV 120
Query: 177 KALVNLSVVFNPRNPNMKPLQVFKAVYGDDYYICR-----FQEPGEIEAEF--AQMGTET 229
+ L + + +P+ ++ + D R F+ PGE EA A E
Sbjct: 121 RGLAFMEFI--------RPMPTWQDFHQDHAEAARAVFRKFRTPGEGEAMILEANAFVER 172
Query: 230 VL----------KEFLTYRNPGP 242
VL +E YR P P
Sbjct: 173 VLPGGIVRKLGDEEMAPYRTPFP 195
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
N I+++ + G G ++ IHGFPL +SW Q AL GYR + D RG+G + P
Sbjct: 10 NSTSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT 69
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
N I+++ + G G ++ IHGFPL +SW Q AL GYR + D RG+G + P
Sbjct: 9 NSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP 67
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 71 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 183 SVV 185
+
Sbjct: 127 EFI 129
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
N I+++ + G G ++ IHGFPL +SW Q AL GYR + D RG+G + P
Sbjct: 9 NSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP 67
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 74 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 183 SVV 185
+
Sbjct: 130 EFI 132
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPS 129
I ++ + G G ++ IHG+PL SW +Q+ AL GYR + D RG+G + P E
Sbjct: 17 IEIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE 76
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALV 180
Y F G G +A Y+ + DR++ +V
Sbjct: 77 YDTFTSDLHQLLEQLELQNVTLVGFSXG---GGEVARYISTYGTDRIEKVV 124
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
N I+++ + G G ++ IHGFPL +SW Q AL GYR + D RG+G + P
Sbjct: 9 NSTSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP 67
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 65 VNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
V V G MH + G G +LF+HG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 123 APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNL 182
P E+V +V HDWG+ + ++ P+RVK + +
Sbjct: 71 KP----DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 183 SVV 185
+
Sbjct: 127 EFI 129
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V +G ++ + G G +LF HG+ L W +Q+ L+S GYR +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
Y F +G G +A Y+ RV LV L
Sbjct: 64 WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG---GGDVARYIARHGSARVAGLVLLGA 120
Query: 185 VF-----NPRNPNMKPLQVF 199
V P P PL VF
Sbjct: 121 VTPLFGQKPDYPQGVPLDVF 140
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 68 NGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEV 127
+G+ + + GQG ++FIHG+PL +W+ Q+ A+ GYR +A D RG+G + +
Sbjct: 7 DGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDG 66
Query: 128 PSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDW-GALIAWYLCLFRPDRVKALVNLS--- 183
+ V +V H G +A Y+ R+++ V LS
Sbjct: 67 YDFDTF----ADDLNDLLTDLDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIP 122
Query: 184 --VVFNPRNPNMKPLQVFKAV 202
++ + +NP+ P +VF A+
Sbjct: 123 PVMIKSDKNPDGVPDEVFDAL 143
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V +G ++ + G G +LF HG+ L W +Q+ L+S GYR +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
Y F +G G +A Y+ RV LV L
Sbjct: 64 WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG---GGDVARYIARHGSARVAGLVLLGA 120
Query: 185 VF-----NPRNPNMKPLQVF 199
V P P PL VF
Sbjct: 121 VTPLFGQKPDYPQGVPLDVF 140
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
V +G ++ + G G +LF HG+ L W +Q+ L+S GYR +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
Y F +G G +A Y+ RV LV L
Sbjct: 64 WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG---GGDVARYIARHGSARVAGLVLLGA 120
Query: 185 VF-----NPRNPNMKPLQVF 199
V P P PL VF
Sbjct: 121 VTPLFGQKPDYPQGVPLDVF 140
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 68 NGINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
G+ MH ++G L +HG P + +R + + G R VAPDL G+G +D P
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 125 AEVPSYT-CLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+ YT H E+V +V DWG ++ L + RP V L+ ++
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDALQL---ERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMN 147
Query: 184 VVF 186
Sbjct: 148 TAL 150
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
+ YT + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 186 F 186
Sbjct: 151 L 151
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
+ YT + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 186 F 186
Sbjct: 151 L 151
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
+ YT + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 186 F 186
Sbjct: 151 L 151
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 66 NVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
N I ++ ++G G ++ IHG+PL +SW Q L + GYR + D RG+G +
Sbjct: 9 NSTPIELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVN 68
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWG-ALIAWYLCLFRPDRVKALVNLS- 183
Y V +VG G +A Y+ + +RV L L+
Sbjct: 69 TGYDYDTF----AADLHTVLETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLAS 124
Query: 184 ----VVFNPRNPNMKPLQVFKAV 202
+V NP P +VF +
Sbjct: 125 LEPFLVQRDDNPEGVPQEVFDGI 147
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
+ YT + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 186 F 186
Sbjct: 151 L 151
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 59 DIQHKVVNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLR 116
+I+ + V G +M E G P++LF+HG P + WR+ I L S +APDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 117 GYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRV 176
G+G + P ++ H ++V DWG +A++L RPD V
Sbjct: 65 GFGQSGKP-DIAYRFFDHVRYLDAFIEQRGVT---SAYLVAQDWGTALAFHLAARRPDFV 120
Query: 177 KALVNLSVV 185
+ L + +
Sbjct: 121 RGLAFMEFI 129
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
+ YT + +V DWG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 59 DIQHKVVNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLR 116
+I+ + V G +M E G P++LF+HG P + WR+ I L S +APDL
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 117 GYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRV 176
G+G + P ++ H ++V DWG +A++L RPD V
Sbjct: 65 GFGQSGKP-DIAYRFFDHVRYLDAFIEQRGVT---SAYLVAQDWGTALAFHLAARRPDFV 120
Query: 177 KALVNLSVV 185
+ L + +
Sbjct: 121 RGLAFMEFI 129
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 64 VVNVNGINMHVAEKG--QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDT 121
V +G N+ + G G ++F HG+PL W +Q+ S GYR +A D RG+G +
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRS 62
Query: 122 DAPA---EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKA 178
D P+ ++ +Y + V + G +A Y+ P RV
Sbjct: 63 DQPSTGHDMDTYAA------DVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAK 116
Query: 179 LVNLS-----VVFNPRNPNMKPLQVFK 200
V +S +V + NP+ PL+VF
Sbjct: 117 AVLVSAVPPVMVKSDTNPDGLPLEVFD 143
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
Q K + + G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 9 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 67
Query: 121 TD--APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKA 178
+D +P+ Y+ V V+ HDWG+ + + DRV+
Sbjct: 68 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRVQG 126
Query: 179 LVNLSVVFNP 188
+ + + P
Sbjct: 127 IAFMEAIVTP 136
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 61 QHKVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGD 120
Q K + + G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 11 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 69
Query: 121 TD--APAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKA 178
+D +P+ Y+ V V+ HDWG+ + + DRV+
Sbjct: 70 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRVQG 128
Query: 179 LVNLSVVFNP 188
+ + + P
Sbjct: 129 IAFMEAIVTP 138
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 68 NGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
+G ++ + G G I+F HG+PL SW Q+ LA+ GYR +A D RG+G + P
Sbjct: 7 DGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP 63
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
+N + + G GP +L +HGFP W H++ + ++ + DL GYG +D P
Sbjct: 18 INTSSGRIFARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVF-VVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+T F + GHD GA +++ L L P R+ L L
Sbjct: 77 ESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLD 136
Query: 184 VV 185
++
Sbjct: 137 IL 138
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
+N + + G GP +L +HGFP W H++ + ++ + DL GYG +D P
Sbjct: 18 INTSSGRIFARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVF-VVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+T F + GHD GA +++ L L P R+ L L
Sbjct: 77 ESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLD 136
Query: 184 VV 185
++
Sbjct: 137 IL 138
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Query: 69 GINMHVAEKGQGP---LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
G+ H ++G + L +HG P Y +R I A G R +APD G+G +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
+ YT + +V WG + L + P R K L+ ++
Sbjct: 93 DEEDYT--FEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNAC 150
Query: 186 F 186
Sbjct: 151 L 151
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
+N + + G GP +L +HGFP W H++ + ++ + DL GYG +D P
Sbjct: 18 INTSSGRIFARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVF-VVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+T F + GH+ GA +++ L L P R+ L L
Sbjct: 77 ESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLD 136
Query: 184 VV 185
++
Sbjct: 137 IL 138
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 65 VNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAP 124
+N + + G GP +L +HGFP W H++ + ++ + DL GYG +D P
Sbjct: 18 INTSSGRIFARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 125 AEVPSYTCLHXXXXXXXXXXXXXXXQEKVF-VVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+T F + GH GA +++ L L P R+ L L
Sbjct: 77 ESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLD 136
Query: 184 VV 185
++
Sbjct: 137 IL 138
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 63 KVVNVNGINMHVAEKGQGPLILFIHGFP---LLWYSWRHQITALASLGYRAVAPDLRGYG 119
K + G+ + + G+G ++ IHG + +WR I AL+ YR +APD+ G+G
Sbjct: 8 KSILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFG 66
Query: 120 DTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
TD P +Y EK +VG+ +G +A L +RV +
Sbjct: 67 FTDRP---ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRM 123
Query: 180 VNLSVV 185
V + V
Sbjct: 124 VLMGAV 129
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
Query: 76 EKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHX 135
+K G IL HG +W I LA GYR +A D G+ + PA Y
Sbjct: 42 KKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAH---YQYSFQ 98
Query: 136 XXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPRN-PNMK 194
+ V+GH G +A L P +V+ L V+ NP + K
Sbjct: 99 QLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERL----VLVNPIGLEDWK 154
Query: 195 PLQV-FKAVYGDDYYICRFQEPGEIEAEFAQ 224
L V +++V DD+Y Q E ++ Q
Sbjct: 155 ALGVPWRSV--DDWYRRDLQTSAEGIRQYQQ 183
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 61/166 (36%), Gaps = 20/166 (12%)
Query: 81 PLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXX 140
P+I F HG+PL W Q+ + GYR VA D RG+G + ++V +
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRS---SQVWDGHDMDHYADDV 79
Query: 141 XXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLS-----VVFNPRNPNMKP 195
Q V V G + Y+ D+V V ++ +V P NP P
Sbjct: 80 AAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLP 139
Query: 196 LQVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTYRNPG 241
VF FQ ++ + AQ + F Y PG
Sbjct: 140 KSVFDG----------FQA--QVASNRAQFYRDVPAGPFYGYNRPG 173
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 63 KVVNVNGINMHVAEKGQGPLILFIHGFP---LLWYSWRHQITALASLGYRAVAPDLRGYG 119
K + G+ + + G+G ++ IHG + +WR I AL+ YR +APD+ G+G
Sbjct: 8 KSILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFG 66
Query: 120 DTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
TD P +Y EK +VG+ +G +A L +RV +
Sbjct: 67 FTDRP---ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRM 123
Query: 180 V 180
V
Sbjct: 124 V 124
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 70 INMHVAEKGQGPLILFIHGFPLLWYSWR-HQITALASLGYRAVAPDLRGYGDTDAPAEVP 128
IN+ + G G ++FI G +W HQ+ A + GYR + D RG G T+
Sbjct: 33 INLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFT 92
Query: 129 SYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSV 184
+ T + VVG GA IA L + P+ V + V ++
Sbjct: 93 TQTMVADTAALIETLDIAPAR-----VVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 63 KVVNVNGINMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
+ V++ I ++V EKG GPL LF HG + L+ + +A D RG+G +D
Sbjct: 51 RRVDIGRITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGLSD 109
Query: 123 APA---EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKAL 179
P E Y + +VGH GA + PD V+++
Sbjct: 110 KPETGYEANDYA-------DDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSV 162
Query: 180 VNLSVVFNP 188
V ++ F P
Sbjct: 163 V--AIDFTP 169
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 100/298 (33%), Gaps = 50/298 (16%)
Query: 82 LILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXX 141
+I F HG+PL W Q+ + G+R VA D RG+G + ++V +
Sbjct: 28 VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRS---SQVWDGHDMDHYADDAA 84
Query: 142 XXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLS-----VVFNPRNPNMKPL 196
+ V G + Y+ V V +S +V NPN P
Sbjct: 85 AVVEKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSKAVLISSVPPLMVKTSSNPNGTPK 144
Query: 197 QVFKAVYGDDYYICRFQEPGEIEAEFAQMGTETVLKEFLTYRNPGPLFLPKGKGFGHPPD 256
VF DD+ + A AQ + F Y PG P +
Sbjct: 145 SVF-----DDF-------QAHVAANRAQFYLDVPAGPFYGYNRPG----------AKPSE 182
Query: 257 AQIALPSWLSEEDVKYYASKYEKAGFTGGINYYRNIELNWELLAPWTGAQIKVPVKFIVG 316
I +W + + ++Y+ GI + + +L I +PV I G
Sbjct: 183 GVIY--NWWRQGMMGSTKAQYD------GIVAFSQTDFTNDLKG------ITIPVLVIHG 228
Query: 317 DLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVGHFINEEKPDEVNKHIYNFFQK 374
D D Y + G + ++I +G H I D+VN + F Q
Sbjct: 229 DDDQVVP------YADSGVLSAKLVKNGKLITYKGAPHGIPTTHADKVNADLLEFLQS 280
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 5/136 (3%)
Query: 74 VAEKGQGPLILFIHGF---PLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSY 130
VA Q P ++ +HG +WR I LA + VAPDL G+G ++ P P +
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYPETYPGH 81
Query: 131 TCLHXXXXXXXXXXXXXXXQ-EKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPR 189
EK +VG+ G + L + P+R + + V P
Sbjct: 82 IMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPM 141
Query: 190 NPNMKPLQVFKAVYGD 205
N L A Y D
Sbjct: 142 NARPPELARLLAFYAD 157
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 151 EKVFVVGHDWGALIAWYLCLFRPDRVKALVNL--SVVFNPRN--PNMKP--LQVFKAVYG 204
+K +G G L+A + L P+RV+ALV + S F+ R+ P +KP L F+
Sbjct: 74 DKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLS 133
Query: 205 DDYYICRFQEPGEIEAEFAQMGTETVLKE 233
DD FQ E MGTET ++
Sbjct: 134 DD-----FQRTVERFLALQTMGTETARQD 157
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 50 KNIGSSMEEDIQHKVVNVNGINMHVAEKGQGPLILFIH---GFPLLWYSWRHQITALASL 106
+ I E + VN G+ E G+G ++ IH +WR+ I LA
Sbjct: 6 EQISEKSERAYVERFVNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILAR- 64
Query: 107 GYRAVAPDLRGYGDTDAP 124
YR +A D+ G+G T P
Sbjct: 65 HYRVIAMDMLGFGKTAKP 82
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 83 ILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXX 142
+L HGF S R A GY P L G+G T PAE+ + T
Sbjct: 52 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 109
Query: 143 XXXXXXXQEKVFVVGHDW-GALIAWYLCLFRPDRVKALVNLSVVFNPRNPNMKPL 196
+ +F+ G GAL W F P+R ++ ++ +P++ L
Sbjct: 110 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALRMESPDLAAL 163
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 83 ILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXX 142
+L HGF S R A GY P L G+G T PAE+ + T
Sbjct: 54 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 111
Query: 143 XXXXXXXQEKVFVVGHDW-GALIAWYLCLFRPDRVKALVNLSVVFNPRNPNMKPL 196
+ +F+ G GAL W F P+R ++ ++ +P++ L
Sbjct: 112 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALRMESPDLAAL 165
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 54 SSMEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALAS 105
+++ E K V +N N+H E G G ++ +HG W ++ +
Sbjct: 2 TALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVD 61
Query: 106 LGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIA 165
GYR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNSMGGATA 118
Query: 166 WYLCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 119 LNFALEYPDRIGKLI 133
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 54 SSMEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALAS 105
+++ E K V +N N+H E G G ++ +HG W ++ +
Sbjct: 2 TALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVD 61
Query: 106 LGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIA 165
GYR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNSMGGATA 118
Query: 166 WYLCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 119 LNFALEYPDRIGKLI 133
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 71 NMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA-EVPS 129
N+ V G+ ++L HGF W+H + L YR V D G G T+ +
Sbjct: 27 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFDR 84
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPR 189
Y+ L + +FV GH A+I L RPD +V +S +PR
Sbjct: 85 YSNLEGYSFDLIAILEDLKIESCIFV-GHSVSAMIGVLASLNRPDLFSKIVMISA--SPR 141
Query: 190 NPN 192
N
Sbjct: 142 YVN 144
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 71 NMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA-EVPS 129
N+ V G+ ++L HGF W+H + L YR V D G G T+ +
Sbjct: 9 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFDR 66
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPR 189
Y+ L + +FV GH A+I L RPD +V +S +PR
Sbjct: 67 YSNLEGYSFDLIAILEDLKIESCIFV-GHSVSAMIGVLASLNRPDLFSKIVMISA--SPR 123
Query: 190 NPN 192
N
Sbjct: 124 YVN 126
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 54 SSMEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALAS 105
+++ E K V +N N+H E G G ++ +HG W ++ +
Sbjct: 2 TALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVD 61
Query: 106 LGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIA 165
GYR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNAMGGATA 118
Query: 166 WYLCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 119 LNFALEYPDRIGKLI 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 54 SSMEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALAS 105
+++ E K V +N N+H E G G ++ +HG W ++ +
Sbjct: 2 TALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVD 61
Query: 106 LGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIA 165
GYR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNAMGGATA 118
Query: 166 WYLCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 119 LNFALEYPDRIGKLI 133
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 54 SSMEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALAS 105
+++ E K V +N N+H E G G ++ +HG W ++ +
Sbjct: 2 TALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVD 61
Query: 106 LGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIA 165
GYR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNAMGGATA 118
Query: 166 WYLCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 119 LNFALEYPDRIGKLI 133
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 71 NMHVAEKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA-EVPS 129
N+ V G+ ++L HGF W+H + L YR V D G G T+ +
Sbjct: 11 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFDR 68
Query: 130 YTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVVFNPR 189
Y+ L + +FV GH A+I L RPD +V +S +PR
Sbjct: 69 YSNLEGYSFDLIAILEDLKIESCIFV-GHSVSAMIGVLASLNRPDLFSKIVMISA--SPR 125
Query: 190 NPN 192
N
Sbjct: 126 YVN 128
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 78 GQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXX 137
G P ++F+HG ++W T + LG A+A DL G+G + A E +Y+
Sbjct: 79 GSAPRVIFLHGGGQNAHTWD---TVIVGLGEPALAVDLPGHGHS-AWREDGNYSPQLNSE 134
Query: 138 XXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLSVV 185
E FVVG G L A L PD V LV + V
Sbjct: 135 TLAPVLRELAPGAE--FVVGMSLGGLTAIRLAAMAPDLVGELVLVDVT 180
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 56 MEEDIQHKVVNVN-----GINMHVAEKGQGPLILFIHGFPLL---WYSWRHQITALASLG 107
+ E K V +N N+H E G G ++ +HG W ++ + G
Sbjct: 1 LTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAG 60
Query: 108 YRAVAPDLRGYGDTDAPAEVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWY 167
YR + D G+ +DA ++ ++ +VG+ G A
Sbjct: 61 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDI---DRAHLVGNAMGGATALN 117
Query: 168 LCLFRPDRVKALV 180
L PDR+ L+
Sbjct: 118 FALEYPDRIGKLI 130
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 70 INMHVAEKGQGP-LILFIHGF---PLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA 125
+ +H + GQG ++ +HG W ++ I L GYR + D G+G +D+
Sbjct: 25 LRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84
Query: 126 EVPSYTCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALV 180
S + L+ K+ ++G+ G + L P+RV LV
Sbjct: 85 NSGSRSDLNARILKSVVDQLDIA---KIHLLGNSMGGHSSVAFTLKWPERVGKLV 136
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 151 EKVFVVGHDWGALIAWYLCLFRPDRVKALVNL--SVVFNPRN--PNMKP--LQVFKAVYG 204
+K +G G L+A + L P+RV+ALV + S F+ R+ P +KP L F+
Sbjct: 74 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLS 133
Query: 205 DD--YYICRFQEPGEIEAEFAQMGTETVLKEFLTYRNP 240
DD + RF E A+ + K L P
Sbjct: 134 DDQQRTVERFLALQTXGTETARQDARALKKTVLALPXP 171
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 80 GPL-ILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXX 138
GP+ +L +HGF +S R A A GY P L+G+G E T H
Sbjct: 39 GPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDME---RTTFHDWVA 95
Query: 139 XXXXXXXXXXXQ-EKVFVVGHDWGALIAWYLCLFRPD 174
+ + +FV G G + YL PD
Sbjct: 96 SVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPD 132
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 81 PLILFIHGFPLLWYSWRHQITA----LASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXX 136
PL + IHGF +S I A L +G + D+ G+G +D E +
Sbjct: 28 PLCIIIHGFT--GHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTN 85
Query: 137 XXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALVNLS 183
+++ GH G L D +KAL+ LS
Sbjct: 86 ILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 73 HVAEKGQGPL-ILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPA-EVPSY 130
HV KG G I+F GF W A +R + D G G +D A ++ Y
Sbjct: 12 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYDLNRY 70
Query: 131 TCLHXXXXXXXXXXXXXXXQEKVFVVGHDWGALIAWYLCLFRPDRVKALV 180
L +E VFV GH GALI + RP+ LV
Sbjct: 71 QTLDGYAQDVLDVCEALDLKETVFV-GHSVGALIGMLASIRRPELFSHLV 119
>pdb|2MLL|A Chain A, Mistletoe Lectin I From Viscum Album
Length = 241
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 316 GDLDLTYNAPGT---------KDYINKGGFKKAVPLLEE 345
GDLD+T G +DY++ G F A+PLL +
Sbjct: 4 GDLDVTAQTTGAGYFSFITLLRDYVSSGSFSNAIPLLSQ 42
>pdb|1CE7|A Chain A, Mistletoe Lectin I From Viscum Album
Length = 241
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 316 GDLDLTYNAPGT---------KDYINKGGFKKAVPLLEE 345
GDLD+T G +DY++ G F A+PLL +
Sbjct: 4 GDLDVTAQTTGAGYFSFITLLRDYVSSGSFSNAIPLLSQ 42
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 83 ILFIHGFPLLWYSWRH--QITALASLGYRAVAPDLRGYG---DTDAPAEV 127
+L +HG +W++ + LA GYRAVA DL G G + APA +
Sbjct: 35 VLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPI 84
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 309 VPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVGHFINE 358
V V+ +GD D+ A G KD I + + +++ ++ +GHF NE
Sbjct: 321 VTVEEAIGDADIVVTATGNKDII----MLEHIKAMKDHAILGNIGHFDNE 366
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 309 VPVKFIVGDLDLTYNAPGTKDYINKGGFKKAVPLLEEVIVMEGVGHFINE 358
V V+ +GD D+ A G KD I + + +++ ++ +GHF NE
Sbjct: 322 VTVEEAIGDADIVVTATGNKDII----MLEHIKAMKDHAILGNIGHFDNE 367
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 67 VNGINMHVA----EKGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTD 122
VNG +H G P I+ + W Q+ AL S +R + D RG+G ++
Sbjct: 9 VNGTELHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAAL-SKHFRVLRYDTRGHGHSE 67
Query: 123 AP 124
AP
Sbjct: 68 AP 69
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 64 VVNVNGINMHVAEKGQGPLILFIHGF 89
V +NG+ ++ G GPL F+H
Sbjct: 517 TVKINGVETEISGSGNGPLAAFVHAL 542
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 64 VVNVNGINMHVAEKGQGPLILFIHGF 89
V +NG+ ++ G GPL F+H
Sbjct: 517 TVKINGVETEISGSGNGPLAAFVHAL 542
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 64 VVNVNGINMHVAEKGQGPLILFIHGF 89
V +NG+ ++ G GPL F+H
Sbjct: 519 TVKINGVETEISGSGNGPLAAFVHAL 544
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 77 KGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYG-DTDAPAEVPSYT 131
+G+G +L IHG + Q+ +R +APDL G+G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 77 KGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYG-DTDAPAEVPSYT 131
+G+G +L IHG + Q+ +R +APDL G+G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 77 KGQGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYG-DTDAPAEVPSYT 131
+G+G +L IHG + Q+ +R +APDL G+G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 79 QGPLILFIHGFPLLWYSWRHQITALASLGYRAVAPDLRGYGDTDAPAEVPSYTCLHXXXX 138
+G + +HG +SW L + G++ A DL G TD ++ L+
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASG-TDL-RKIEELRTLYDYTL 60
Query: 139 XXXXXXXXXXXQEKVFVVGHDWGAL--------------IAWYLCLFRPDRVKALVNLSV 184
EKV +VGH G A +L F PD V +
Sbjct: 61 PLXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLE 120
Query: 185 VFNPRNP 191
+N R P
Sbjct: 121 QYNERTP 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,317,819
Number of Sequences: 62578
Number of extensions: 538939
Number of successful extensions: 1203
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 141
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)