Query 017222
Match_columns 375
No_of_seqs 133 out of 1875
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.4E-39 8.1E-44 311.3 26.4 341 2-375 94-472 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 4.2E-24 1.4E-28 202.5 22.7 320 2-365 101-433 (451)
3 3o7q_A L-fucose-proton symport 99.9 1.7E-21 5.8E-26 183.9 28.4 289 3-356 101-423 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 9.2E-21 3.1E-25 181.7 18.9 348 3-372 95-478 (491)
5 2gfp_A EMRD, multidrug resista 99.8 3E-19 1E-23 165.2 11.6 272 3-340 75-351 (375)
6 2cfq_A Lactose permease; trans 99.7 2E-17 6.8E-22 155.4 15.6 140 234-373 267-407 (417)
7 2xut_A Proton/peptide symporte 99.7 6E-17 2E-21 156.5 14.3 97 3-99 95-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 9.8E-11 3.3E-15 110.3 17.8 139 232-370 68-211 (451)
9 3o7q_A L-fucose-proton symport 99.2 7.2E-10 2.5E-14 104.0 20.2 109 231-339 66-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 1.2E-09 4.2E-14 104.2 18.7 134 232-365 60-196 (491)
11 2gfp_A EMRD, multidrug resista 99.1 3.4E-10 1.2E-14 104.1 11.7 141 232-372 41-181 (375)
12 2xut_A Proton/peptide symporte 99.1 3.7E-09 1.3E-13 101.7 16.9 133 232-364 60-197 (524)
13 4gc0_A D-xylose-proton symport 98.8 1.7E-07 5.9E-12 89.1 18.3 134 236-369 65-223 (491)
14 2cfq_A Lactose permease; trans 97.6 3.5E-05 1.2E-09 71.7 4.0 99 9-107 305-406 (417)
15 2g9p_A Antimicrobial peptide l 54.7 9 0.00031 18.6 1.9 15 245-259 2-16 (26)
16 3sk7_A Protein SEQA; sequestra 25.4 35 0.0012 24.7 1.9 25 101-125 75-99 (116)
17 1j3e_A SEQA protein; protein-D 20.7 48 0.0017 23.9 1.9 25 101-125 74-98 (115)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.4e-39 Score=311.30 Aligned_cols=341 Identities=21% Similarity=0.285 Sum_probs=234.8
Q ss_pred hhHHHHHHHH------------------hhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHH
Q 017222 2 LASVAGLLSA------------------FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTL 62 (375)
Q Consensus 2 ~~~i~~~~~~------------------~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~ 62 (375)
+..+++++++ +++|+++++++|+++|++.|+. ++++.|++|++|+++||+..++.+.++..
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhh
Confidence 3457777777 4789999999999999999985 67789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--------CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCC
Q 017222 63 GTIFEAALAWMVMP--------RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPS 134 (375)
Q Consensus 63 G~~~~~~~~~~~~~--------~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~ 134 (375)
|.++++.+++.... .+.||+++.+..+++++.++.++++|||||||..|+|.||+++.++|.+.++..+.+
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~- 252 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA- 252 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH-
Confidence 99999888776532 356999999999999999999999999999999999999999999988654321100
Q ss_pred CccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcc
Q 017222 135 GMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCG 214 (375)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (375)
.++.++ .....++ .......++. ++.........+.+...++....+.+.+...
T Consensus 253 ----------~~~~~~--------~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 306 (491)
T 4gc0_A 253 ----------VQEIKH--------SLDHGRK-TGGRLLMFGV--GVIVIGVMLSIFQQFVGINVVLYYAPEVFKT----- 306 (491)
T ss_dssp ----------HHHHHH--------HHHHHHH-HTTHHHHSCC--THHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred ----------HHHHHH--------HHHhhhh-hhhHHHHhcc--cHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----
Confidence 000000 0000000 0011111111 1112222222222222233333333333211
Q ss_pred cchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---c-cchhHHHH-HHHHH
Q 017222 215 STLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---H-QPVTLTTV-LLFGA 289 (375)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~-~~~~~ 289 (375)
......+......+.++..+++.+++++++||+|||+.++.+...+.++.+.+.. . .+...... ..+..
T Consensus 307 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 307 ------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp ------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 0111222333445667778899999999999999999988777666554444321 1 12222222 22223
Q ss_pred HHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHH
Q 017222 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG------CHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
..+..+..++.|++.+|+||+++|+++.|+++.++++++++++.++|.+.+. .+....+++++++++++.++++
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344556678899999999999999999999999999999999988866442 2233467889999999999999
Q ss_pred hccccccCCCCC
Q 017222 364 LFPFETKGKRID 375 (375)
Q Consensus 364 ~~~pet~~~~~~ 375 (375)
++.||||||++|
T Consensus 461 ~~~PETkg~tLe 472 (491)
T 4gc0_A 461 KFVPETKGKTLE 472 (491)
T ss_dssp HHCCCCTTCCHH
T ss_pred heecCCCCCCHH
Confidence 999999999875
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=4.2e-24 Score=202.53 Aligned_cols=320 Identities=17% Similarity=0.222 Sum_probs=201.9
Q ss_pred hhHHHHHHHHh----hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017222 2 LASVAGLLSAF----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP 76 (375)
Q Consensus 2 ~~~i~~~~~~~----~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 76 (375)
+.+++.++.++ ++|++.++++|++.|++.|.. +...+++.|++|+++|++..++.+....+|.++++.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888 899999999999999999875 6778999999999999999999999999999999998876666
Q ss_pred CCc-hHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCC
Q 017222 77 RLN-WRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEH 154 (375)
Q Consensus 77 ~~~-WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (375)
..+ ||+.|++.+++.++. ++.++++||+|+....+.+ +|. ..+.+.+.+++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~------ 233 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY--------------------KNDYPDDYNEK------ 233 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT--------------------CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhh--------------------cccccccchhh------
Confidence 677 999999998877665 4556778999975321110 000 00000000000
Q ss_pred CCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHH
Q 017222 155 TPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFI 234 (375)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
+ + ++........+..++++.. +......+...+.+++...+.|.+..+. .+.+.........+
T Consensus 234 ~---~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~ 296 (451)
T 1pw4_A 234 A---E-QELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSSWAYFL 296 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHHHHHHH
T ss_pred h---h-cccccccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHH
Confidence 0 0 0000000012333333222 2222222333334444444444332210 01111112223345
Q ss_pred HHhhhhhHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017222 235 TSLAELPGLLLSAVIVDRV--GRKISMAIMSILTF-IFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 235 ~~~~~i~g~~~~~~l~d~~--gRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
..++.+++.++.+++.||+ |||+.+..+..+.. +..+.+.... +.+......+...++..+..+..+.+..|.+|
T Consensus 297 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (451)
T 1pw4_A 297 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 376 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence 5677788999999999999 99998776665554 3333332221 22222233333333334455666789999999
Q ss_pred ccchhHHHHHHHHHHhH-HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017222 310 TSLRATGAGIASAVGRI-GGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 310 ~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+.+.+++.+++.++.++.
T Consensus 377 ~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 377 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999888877665556666666666666555544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=1.7e-21 Score=183.92 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=183.9
Q ss_pred hHHHHHHH---HhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 017222 3 ASVAGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM-PR 77 (375)
Q Consensus 3 ~~i~~~~~---~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~ 77 (375)
..++.++. ++++|++.++++|++.|++.|.. +...+++.|+.|+|+|++..++.+.+..+|.++++.++..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777 78899999999999999999975 677899999999999999999999999999999999877765 44
Q ss_pred Cc-------------------------hHHHHHHHhHHHHHHHHH--HhcCcCCchhhhhcCChHHHHHHHHHHHHHhCC
Q 017222 78 LN-------------------------WRWLLALSSVPSFAVLLL--YGLAPETPKYLCTAGKMADAAHVLEKMAQRNGT 130 (375)
Q Consensus 78 ~~-------------------------WR~~f~~~~i~~ll~~~~--~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~ 130 (375)
.+ ||+.|.+.+.+.++..+. +...||+++.. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------------------~ 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---------------------H 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------------------C
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------------------c
Confidence 43 999998777665554333 22345554310 0
Q ss_pred CCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhh-hhh
Q 017222 131 NLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSEL-NSE 209 (375)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (375)
.++++ ++...+++++++.+..+...+..+ .....+++...+.+.+ ..+
T Consensus 240 --------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 240 --------------SDAKQ--------------GSFSASLSRLARIRHWRWAVLAQF---CYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp --------------CCSST--------------TSHHHHHHHHTTCSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred --------------ccccc--------------cchhhhHHHHHhChHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhc
Confidence 00000 000123445555444333222222 2222233333333332 211
Q ss_pred hhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 017222 210 EARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289 (375)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
. .+.+.........+..++.+++.++.+++.||+|||+.+..+.+++.+..+......+... ....+..
T Consensus 289 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 357 (438)
T 3o7q_A 289 I----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLC 357 (438)
T ss_dssp S----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_pred c----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 0 0111111222234456677889999999999999999988877766665554444333322 2222333
Q ss_pred HHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHH
Q 017222 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIV 356 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (375)
.++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+.+++.+
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444455677888889999988 999999877 788999999999988877655 3344444433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=9.2e-21 Score=181.75 Aligned_cols=348 Identities=10% Similarity=-0.027 Sum_probs=178.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017222 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++ |+...++.+...++|..+++.++..+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788888999999999999999999975 677899999999999 7778888999999999999999888777789
Q ss_pred hHHHHHHHhHHHHHHHHHHhc-----CcCCchhhhhcCChHHHHHHHHH--------------HHHHhCCCCCCCccccC
Q 017222 80 WRWLLALSSVPSFAVLLLYGL-----APETPKYLCTAGKMADAAHVLEK--------------MAQRNGTNLPSGMLVSD 140 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~-----~pESp~~l~~~~~~~ea~~~l~~--------------~~~~~~~~~~~~~~~~~ 140 (375)
||+.|.+.++..++..+...+ .+|.++--..+.+.+|.++..++ ....+..+. ++....
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 252 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--PAYINL 252 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhh
Confidence 999999987666554333221 12111111111233344333332 011110000 000000
Q ss_pred CCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhh
Q 017222 141 ETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLL 220 (375)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
. .......... ......+++ ......+++.. .....+...+.....+.......+.+..+.. +.
T Consensus 253 ~--~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 316 (491)
T 4aps_A 253 L--TIVAIAIPVF--YFAWMISSV----KVTSTEHLRVV-SYIPLFIAAVLFWAIEEQGSVVLATFAAERV--DS----- 316 (491)
T ss_dssp H--HHHHHHHHHH--HHHHHC----------------CT-THHHHHHHHHHHHHHHGGGGTHHHHHHHHSC--CC-----
T ss_pred h--hHHHHHHHHH--HHHHHhhcc----cccHHHHHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHh--cc-----
Confidence 0 0000000000 000000000 00000000000 0111111111111111111111111111000 00
Q ss_pred ccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHH-----HHHHHHHHHHHHHhhc---------cchhHHHHHH
Q 017222 221 EHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMA-----IMSILTFIFLLPLLTH---------QPVTLTTVLL 286 (375)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 286 (375)
....... ......+..+++..+.+++.||+|||+... .+..++.+....+... .+........
T Consensus 317 -~~~~~~~--~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 317 -SWFPVSW--FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW 393 (491)
T ss_dssp -SSSCSGG--GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred -CccCHHH--HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 0001111 112334555667788899999999986533 3333333332222211 1222222222
Q ss_pred HHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017222 287 FGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
+..........+..+.+..|.+|++.|+++.|+.+...++++.++|.+.+.+.+. +....+.+++++.+++.+..+++.
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334566788999999999999999999999999999999987755443 344566777777777777777777
Q ss_pred ccccCC
Q 017222 367 FETKGK 372 (375)
Q Consensus 367 pet~~~ 372 (375)
|+++++
T Consensus 473 ~~~~~~ 478 (491)
T 4aps_A 473 KRIQGL 478 (491)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 776653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.79 E-value=3e-19 Score=165.16 Aligned_cols=272 Identities=14% Similarity=0.098 Sum_probs=164.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017222 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|++.|++.|.. +....++.|+.|+|+|++..+..+....+|..+++.++..+.+..+||
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 75 FMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 4567778888999999999999999999874 667889999999999999999999999999999999988877777999
Q ss_pred HHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017222 82 WLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|.+.++..++..+ ...++||+|+... + + ++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~---------------~~~~----------- 189 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDA---P----------------R---------------TRLL----------- 189 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C----------------C---------------CCTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCc---c----------------c---------------ccHH-----------
Confidence 999998887776654 5567888875210 0 0 0000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017222 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
+++++.++++..+. .....+.....++....+.|.+..+.. +.+............++.+
T Consensus 190 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~ 249 (375)
T 2gfp_A 190 -------TSYKTLFGNSGFNC---YLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAF 249 (375)
T ss_dssp -------TCSTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHH
T ss_pred -------HHHHHHhcCcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHH
Confidence 01122333322221 222222223333344344333221100 0011111111223345556
Q ss_pred hHHHHHHHHHhhhCchHHHHHHH-HHHHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHH
Q 017222 241 PGLLLSAVIVDRVGRKISMAIMS-ILTFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGA 317 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~ 317 (375)
++..+.+++.||.+||....... ............ ..+.+......+...+......+....+..|.+| +.|+++.
T Consensus 250 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~ 328 (375)
T 2gfp_A 250 FGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAG 328 (375)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHH
Confidence 66666777777776632221111 111111001111 1122222222222223333455677888999999 8999999
Q ss_pred HHHHHHHhHHHhHHHHHHHHhhc
Q 017222 318 GIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
|+.+..+++++.++|.+.+.+.+
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988776654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.74 E-value=2e-17 Score=155.38 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017222 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+..+++.++.+++.||+|||+.+..+..+..+..+......+.+...+..+..........+..+.+.+|.+|++.|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 44456678899999999999999988776666555443333333322221111111111112223457899999999999
Q ss_pred hHHHHHH-HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 017222 314 ATGAGIA-SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 314 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
+++.++. +..++++++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||++..+
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999996 67778999999999987776555445566667777777777677778877644
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.71 E-value=6e-17 Score=156.48 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhh-hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhcCC
Q 017222 3 ASVAGLLSAFSL-NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVV---ISTFWTLGTIFEAALAWMVMPR 77 (375)
Q Consensus 3 ~~i~~~~~~~~~-~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~ 77 (375)
..++.++.++++ |++.+++.|++.|++.|.. +...+++.|++|+++|++..+. .+...++|..+++.++..+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456677788888 9999999999999999875 6778999999999999887766 8888999999999887777777
Q ss_pred CchHHHHHHHhHHHHHHHHHHh
Q 017222 78 LNWRWLLALSSVPSFAVLLLYG 99 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~~~~~~ 99 (375)
.+||+.|.+.++..++..+...
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998877666544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=9.8e-11 Score=110.32 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=98.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017222 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT----HQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..++..++.++.|.+.||+|||++++.+.++.++..+.... ..+.+...+..+..+++.....+...++.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34556777888999999999999999998887777666555544 44433333333333333334556677899999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017222 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+|++.|+++.++......++..++|.+...+.+..+ ....+++.+++.++..+..+++.||+.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 999999999999999999999999998876655444 334555666666666666656666654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=7.2e-10 Score=104.00 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017222 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL---LTHQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
...+..+...++.++.|.+.||+|||+.++.+.++.++..+.. ....+.+...+.-++.+.......+....+.+|.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 3445566778899999999999999999988877776655544 3333333333333333333334456678899999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017222 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
+|++.|+++.++.+....++..++|.+...+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=1.2e-09 Score=104.18 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=92.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017222 232 VFITSLAELPGLLLSAVIVDR-VGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
..+..++..++.++.|+++|| +|||+++..+.++..+..+......+.+...+..+..+.......+...++.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 345566778899999999999 8999999888877766665555444444333333333333334556778899999999
Q ss_pred cc--hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017222 311 SL--RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 311 ~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+. |+++.++.+....+++.++|.+...+.+..+....+.+.++..+++.+..++.
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 77788878888999999999988877665544445555554454444444433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=3.4e-10 Score=104.15 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=96.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017222 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.+..|++.||+|||+.+..+.++..+..+......+.+......+..........+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34555667788899999999999999988777766665554443333333223333333333334566778999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017222 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
.|+++.++.+....++..++|.+...+.+..+....+.+.++..++..+..++..||++.+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999887666544333445555555555555455667787543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.06 E-value=3.7e-09 Score=101.69 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=88.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017222 232 VFITSLAELPGLLLSAVIVDRV-GRKISMAIMSILTFIFLLPLLTHQ-PVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
..+..++..++.++.|++.||+ |||+++..+.++..+..+...... +.+...+..+..........+...++.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445566778899999999999 999998887776666555544443 33333333333333333445677889999999
Q ss_pred ccchhHHHHH---HHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 017222 310 TSLRATGAGI---ASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILL 364 (375)
Q Consensus 310 ~~~R~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
++.|+++.+. .+....+++.++|.+...+.+..+....+.+.+++.+++.+..++
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876666 888888999999988776665544444455555555554444443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.82 E-value=1.7e-07 Score=89.10 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=82.6
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh------------------ccchhHHHHHHHHHHHHhhhhc
Q 017222 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT------------------HQPVTLTTVLLFGARMFANGTF 297 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
.++.++|.++.|++.||+|||++++.+.++..+..+.... ..+.....+.=++.++...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998877666554443321 1122222222233344444556
Q ss_pred ccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHhccccc
Q 017222 298 AVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG-------CHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 298 ~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+...+|.+|..|++.|++..++......++...++.+....... ...+...+.......+..+...++.||+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 77889999999999999999988877777666665544332221 1122222333333333444455567886
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.60 E-value=3.5e-05 Score=71.70 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=73.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 017222 9 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVV-ISTFWTLGTIFEAALAWMVMPRLNWRWLLAL 86 (375)
Q Consensus 9 ~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~ 86 (375)
+.++.++.+.+++..++.|++.+.. +....+..|..|++.||+..++ ++....+|..+++.++..+.+..+|+..|.+
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 3344567777888888888776543 4456789999999999998888 4777889998888887766666789999988
Q ss_pred HhHHHHHHHH-HHhcCcCCchh
Q 017222 87 SSVPSFAVLL-LYGLAPETPKY 107 (375)
Q Consensus 87 ~~i~~ll~~~-~~~~~pESp~~ 107 (375)
.++..++..+ .....||.++-
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 385 LGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHHHhhhcCCCch
Confidence 8777766644 34456765543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.66 E-value=9 Score=18.56 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.6
Q ss_pred HHHHHHhhhCchHHH
Q 017222 245 LSAVIVDRVGRKISM 259 (375)
Q Consensus 245 ~~~~l~d~~gRr~~~ 259 (375)
+.|.++.|+|||.+.
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 357788999999753
No 16
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=25.35 E-value=35 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.0
Q ss_pred CcCCchhhhhcCChHHHHHHHHHHH
Q 017222 101 APETPKYLCTAGKMADAAHVLEKMA 125 (375)
Q Consensus 101 ~pESp~~l~~~~~~~ea~~~l~~~~ 125 (375)
+|+||.|-+.+++..+-+..++++-
T Consensus 75 Ip~TpfWViTN~NT~rKr~ml~~vm 99 (116)
T 3sk7_A 75 IPNTPFWVITNNNTSRKQQMVEQVM 99 (116)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred CCCCCeeEEeCCCcHHHHHHHHHHH
Confidence 8999999999999888777777654
No 17
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=20.73 E-value=48 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.8
Q ss_pred CcCCchhhhhcCChHHHHHHHHHHH
Q 017222 101 APETPKYLCTAGKMADAAHVLEKMA 125 (375)
Q Consensus 101 ~pESp~~l~~~~~~~ea~~~l~~~~ 125 (375)
+|+||.|-+.+++..+-+..++++-
T Consensus 74 Ip~TpfWViTN~NT~rKr~ml~~vm 98 (115)
T 1j3e_A 74 VPGTPYWVITNTNTGRKCSMIEHIM 98 (115)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred CCCCCeeeeecCChHHHHHHHHHHH
Confidence 8999999999888888777777654
Done!