BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017224
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis
thaliana GN=At3g10130 PE=1 SV=1
Length = 309
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 25/178 (14%)
Query: 214 PDLETPKYQILKRTANYEVRRYSPFIVVET------NGDKLSGSTGFNDVAGYIFGKNSK 267
PDLET +++L RT YE+R+ P+ V ET D S FN +A Y+FGKN+
Sbjct: 112 PDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTI 171
Query: 268 TEKIPMTTPVFTQAYDN--ELKKVSIQIVLPQDKDM--------------SSLPDPNQET 311
EK+ MTTPV T+ + E +++ ++ + KD S+LP P +
Sbjct: 172 KEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDPS 231
Query: 312 LDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDG---LRPKIGCLLARYNDP 366
+ +++V I AV+ FSG T++ + +E+EL +L D +R + +A+YN P
Sbjct: 232 VKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPP 289
>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1
Length = 205
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 199 EGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRRYSPFIVVETNGDKL----SGSTGF 254
EG D ++ +K P+ I + +YE+R Y P V T + L + TGF
Sbjct: 13 EGSEDQALEMPSWKAPE------DIDPQPGSYEIRHYGPAKWVSTCVESLDWDSAIQTGF 66
Query: 255 NDVAGYIFGKNSKTEKIPMTTPV 277
+ GYI GKN K KI +T PV
Sbjct: 67 TKLNGYIQGKNEKEMKIKLTAPV 89
>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1
Length = 205
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 216 LETPKYQILK----RTANYEVRRYSPFIVVETNGDKL----SGSTGFNDVAGYIFGKNSK 267
+ETP ++ + + +YE+R Y P V T+ + + + TGF + YI GKN K
Sbjct: 20 VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEK 79
Query: 268 TEKIPMTTPV 277
KI MT PV
Sbjct: 80 EMKIKMTAPV 89
>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1
Length = 189
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 216 LETPKYQIL----KRTANYEVRRY--SPFIVVETNG---DKLSGSTGFNDVAGYIFGKNS 266
+ET Y++L K +YE R F VVE G D+ S + Y+ G N
Sbjct: 13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKPFDEASKEAALK-LLKYVGGSND 71
Query: 267 KTEKIPMTTPVFTQAYDNE----LKKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIA 322
K + MT PV A+ E +KV + + +P ++ +S P P+ E++ + + +G
Sbjct: 72 KGAGMGMTAPVSITAFPAEDGSLQQKVKVYLRIP-NQFQASPPCPSDESIKIEERQGMTI 130
Query: 323 AVLKFSGKPTE-DIVHEKEKELHTSL 347
+F G E D V+ K L T+L
Sbjct: 131 YSTQFGGYAKEVDYVNYAAK-LKTAL 155
>sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1 OS=Homo sapiens GN=GVINP1
PE=2 SV=2
Length = 2422
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 37 SFKSRSIAVKTNQNLKWAVRLSLVDQSSPPQSTVDVEWLVGFLYDDLPHLFDDQGI---- 92
S + KT+QNL+ V+LS+ PP++ V+W G + + D+G+
Sbjct: 411 SHSKTATQTKTSQNLQTKVQLSVAQTGGPPEADGLVQWKAGLIASNQTWCVIDRGLQLVP 470
Query: 93 --DRTAYDEQVKFRDPI 107
D + F+DP+
Sbjct: 471 VWDIILSSHRSNFKDPL 487
>sp|Q55FJ0|LVSG_DICDI Probable inactive serine/threonine-protein kinase lvsG
OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1
Length = 2179
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 180 FCSHLDLWDSIKNNDYFSLEGFLDVLKQLRIYKTPDLETPKYQILKRTANYEVRR 234
F ++ DL+D +N Y + G + KQLR +P++ Y L R +EV R
Sbjct: 1698 FSNYSDLYDYSGDNSYAKIGGDSETTKQLRSIYSPEMTYYLYYKLARIIGFEVMR 1752
>sp|A0JUT1|SYP_ARTS2 Proline--tRNA ligase OS=Arthrobacter sp. (strain FB24) GN=proS PE=3
SV=1
Length = 603
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 286 LKKVSIQIVLPQ-DKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELH 344
LK V + + LP ++ + + P +DL++VE I A L +G+ T + E++ +
Sbjct: 291 LKNVVLAVTLPTGERQIVVIGVPGDRGVDLKRVEANIGAYLPVAGEITVEAAGEEDLARN 350
Query: 345 TSLIRDGLRPKI 356
++R L P +
Sbjct: 351 PLIVRGYLGPGM 362
>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2
Length = 190
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 260 YIFGKNSKTEKIPMTTPVFTQAYDNE----LKKVSIQIVLPQDKDMSSLPDPNQETLDLR 315
Y+ G N K + MT PV + NE KK+ + +P ++ S P P+ E++ +
Sbjct: 65 YVGGTNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIP-NQFQGSPPAPSDESVKIE 123
Query: 316 KVEGGIAAVLKFSGKPTEDIVHEKEKELHTSL 347
+ EG +F G E +L T+L
Sbjct: 124 EREGITVYSTQFGGYAKEADYVAHATQLRTTL 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,474,463
Number of Sequences: 539616
Number of extensions: 6584237
Number of successful extensions: 13505
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13494
Number of HSP's gapped (non-prelim): 14
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)