Query 017224
Match_columns 375
No_of_seqs 285 out of 856
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 3E-44 6.5E-49 325.1 11.2 159 215-374 1-167 (176)
2 PF10184 DUF2358: Uncharacteri 99.9 1.3E-26 2.8E-31 196.0 14.0 107 74-183 2-113 (113)
3 KOG4457 Uncharacterized conser 99.3 1.4E-11 3.1E-16 109.2 10.1 118 65-184 28-165 (202)
4 TIGR02096 conserved hypothetic 99.3 3.5E-11 7.5E-16 101.6 12.0 98 92-191 18-123 (129)
5 PF07366 SnoaL: SnoaL-like pol 99.1 6.1E-10 1.3E-14 94.2 10.9 110 79-191 3-121 (126)
6 cd00781 ketosteroid_isomerase 99.1 6.5E-10 1.4E-14 93.2 8.9 94 92-191 23-119 (122)
7 PF12680 SnoaL_2: SnoaL-like d 98.9 1.9E-08 4E-13 79.7 10.5 86 93-183 16-102 (102)
8 PF07858 LEH: Limonene-1,2-epo 97.9 5.2E-05 1.1E-09 65.5 8.9 113 73-191 4-118 (125)
9 TIGR02960 SigX5 RNA polymerase 97.3 0.0032 7E-08 61.7 12.0 89 93-191 225-317 (324)
10 PRK08241 RNA polymerase factor 97.2 0.0033 7.2E-08 62.2 11.1 112 70-191 211-327 (339)
11 COG4319 Ketosteroid isomerase 95.9 0.11 2.4E-06 45.5 10.6 100 74-175 10-116 (137)
12 TIGR02246 conserved hypothetic 95.8 0.21 4.6E-06 41.2 11.8 80 74-153 4-90 (128)
13 cd00531 NTF2_like Nuclear tran 95.6 0.15 3.2E-06 40.7 10.1 107 78-188 3-124 (124)
14 COG3631 Ketosteroid isomerase- 95.0 0.22 4.7E-06 43.5 9.5 111 75-191 6-125 (133)
15 KOG2546 Abl interactor ABI-1, 94.5 0.0043 9.4E-08 62.9 -2.7 106 68-178 65-177 (483)
16 PF13474 SnoaL_3: SnoaL-like d 94.3 0.71 1.5E-05 37.5 10.6 96 74-174 3-103 (121)
17 PRK10016 DNA gyrase inhibitor; 94.2 1.2 2.5E-05 39.1 12.4 124 229-364 2-135 (156)
18 COG3449 DNA gyrase inhibitor [ 93.1 0.95 2.1E-05 40.5 9.8 124 229-363 2-133 (154)
19 PF14534 DUF4440: Domain of un 91.3 1.7 3.8E-05 34.1 8.6 96 74-174 3-99 (107)
20 COG4308 LimA Limonene-1,2-epox 90.6 0.88 1.9E-05 39.0 6.3 109 74-191 10-121 (130)
21 PF06445 GyrI-like: GyrI-like 90.1 6.5 0.00014 32.6 11.6 125 229-366 2-139 (155)
22 PRK10016 DNA gyrase inhibitor; 89.8 1.5 3.2E-05 38.4 7.6 58 311-370 2-59 (156)
23 COG5485 Predicted ester cyclas 89.0 1.1 2.4E-05 38.6 5.8 90 97-191 30-125 (131)
24 COG3449 DNA gyrase inhibitor [ 87.9 2.4 5.2E-05 38.0 7.5 59 311-371 2-61 (154)
25 PF03284 PHZA_PHZB: Phenazine 85.0 14 0.00031 32.9 10.6 96 93-191 38-143 (162)
26 PF13577 SnoaL_4: SnoaL-like d 80.4 17 0.00037 29.6 9.2 80 74-154 7-94 (127)
27 PF06445 GyrI-like: GyrI-like 79.9 2.7 5.9E-05 35.0 4.3 57 311-367 2-60 (155)
28 COG4922 Uncharacterized protei 79.5 17 0.00036 31.2 8.6 73 108-191 41-114 (129)
29 PF02136 NTF2: Nuclear transpo 74.2 11 0.00025 30.7 6.4 77 77-154 4-85 (118)
30 COG4978 Transcriptional regula 69.9 23 0.00049 31.7 7.6 50 308-359 78-127 (153)
31 PRK09636 RNA polymerase sigma 63.8 38 0.00083 32.7 8.6 49 92-140 191-249 (293)
32 smart00871 AraC_E_bind Bacteri 62.2 35 0.00076 28.2 7.1 56 312-367 2-60 (158)
33 TIGR03357 VI_zyme type VI secr 58.5 1E+02 0.0023 26.2 9.5 90 65-155 16-111 (133)
34 COG4978 Transcriptional regula 45.2 91 0.002 27.8 7.1 48 310-358 3-50 (153)
35 smart00871 AraC_E_bind Bacteri 30.3 3E+02 0.0065 22.4 13.1 94 250-353 26-125 (158)
36 cd00780 NTF2 Nuclear transport 29.9 3.1E+02 0.0068 22.4 9.1 59 77-136 8-67 (119)
37 COG5429 Uncharacterized secret 23.9 32 0.00069 33.1 0.6 11 181-191 76-86 (261)
38 PF06764 DUF1223: Protein of u 23.5 78 0.0017 29.6 3.1 19 180-198 32-50 (202)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=3e-44 Score=325.10 Aligned_cols=159 Identities=35% Similarity=0.562 Sum_probs=126.8
Q ss_pred CCCCCceeEeeecCCeEEEEeCCceEEEeccC----CcccchhhHHhhhcccCCCCCCCCCCCCCceEEEeecC---CC-
Q 017224 215 DLETPKYQILKRTANYEVRRYSPFIVVETNGD----KLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN---EL- 286 (375)
Q Consensus 215 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~wv~t~~~----~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~---~~- 286 (375)
++|||+|+|+++.++||||+|++++||||+.. +.|+..||++|++||+|+|+++++|+||+||++++.+. .|
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~ 80 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE 80 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence 47999999999999999999999999999976 34788999999999999999999999999999998421 23
Q ss_pred cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcEEEEEEcCC
Q 017224 287 KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDP 366 (375)
Q Consensus 287 ~~~tmsF~lP~~~q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~~~A~Yd~P 366 (375)
+.++|||+||+++|.++||+|+|++|+|++.|+.++||++|+|+++++++.+++++|+++|+++|+...+.+++|+||+|
T Consensus 81 ~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P 160 (176)
T PF04832_consen 81 KEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLKDKGYYYVAGYDPP 160 (176)
T ss_dssp CEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHHCCCEEEEEESSSS
T ss_pred CcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCCcCCCeEEEEcCCC
Confidence 78999999999999899999999999999999999999999999999999999999999999999996678999999999
Q ss_pred CCCccccc
Q 017224 367 GQTWSFIM 374 (375)
Q Consensus 367 ~~tp~fl~ 374 (375)
|+++|.|
T Consensus 161 -~~~~~~R 167 (176)
T PF04832_consen 161 -FTPPFNR 167 (176)
T ss_dssp --SSSSSS
T ss_pred -CCCccCc
Confidence 9999987
No 2
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.94 E-value=1.3e-26 Score=195.98 Aligned_cols=107 Identities=33% Similarity=0.634 Sum_probs=98.1
Q ss_pred HHHHHHHhhccccccCCCccccccCCCeEEeCCCCcccChHHHHHHH---HHHhhhc--ccEEEEEEeEEcCCcEEEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNI---SMLKMVF--RPAFQLHWVKQTGPYEITTRW 148 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~---~~L~~~~--~~~f~v~~~~~~~~~~i~~rW 148 (375)
+++++||+||+++| .+.++.+||++||+|+||+++|+|+++|+++| +.++.++ +++++|+++.+.+++.|.+||
T Consensus 2 ~~~~~Lr~D~~~~f-~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW 80 (113)
T PF10184_consen 2 DVIRTLREDLPRFF-TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARW 80 (113)
T ss_pred hHHHHHHHHHHHHh-cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEE
Confidence 58999999999999 57789999999999999999999999999995 4555533 799999999998866999999
Q ss_pred EEEEEecCCCCCCcEEEEEEEEEEEeCCCCcEEEE
Q 017224 149 TMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSH 183 (375)
Q Consensus 149 ~m~~~~~~Lpw~~~i~v~G~S~l~~n~~~GkI~~H 183 (375)
+|++.+ ++||+|.+.++|+|+|++|++ |+|++|
T Consensus 81 ~~~g~~-~l~w~p~~~~~G~S~~~ln~~-g~I~~H 113 (113)
T PF10184_consen 81 RLRGVP-RLPWRPRISFDGTSTYTLNSD-GLIYRH 113 (113)
T ss_pred EEEEEe-CCCcCCcEEEEEEEEEEECCC-CcEEeC
Confidence 999987 899999999999999999999 999999
No 3
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.4e-11 Score=109.18 Aligned_cols=118 Identities=22% Similarity=0.374 Sum_probs=97.3
Q ss_pred CCCCccCHHHHHHHHHhhccccccCCCccccccCCCeEEeCCCCc--ccChHHHHHHHHHHh---hhc--ccEEEEEEeE
Q 017224 65 PPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITK--HDTISGYLFNISMLK---MVF--RPAFQLHWVK 137 (375)
Q Consensus 65 ~~~~~~~~~~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~---~~~--~~~f~v~~~~ 137 (375)
.++...+++-+.++||+.++.+|. ...++++|+.||+|.|-+.. ..||..|...|++++ .++ ..+|++.++.
T Consensus 28 ~~~~pe~L~~~yerLr~tlPklF~-~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt 106 (202)
T KOG4457|consen 28 EKPAPEQLEHVYERLRETLPKLFR-RRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVT 106 (202)
T ss_pred cCCChHHHHHHHHHHHHHhHHHHh-hcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeec
Confidence 556677899999999999999999 66899999999999999974 579999999888775 334 5789999887
Q ss_pred E-cCCcEEEEEEEEEEEe-cCCCCCCcE-----------EEEEEEEEEEeCCCCcEEEEe
Q 017224 138 Q-TGPYEITTRWTMVMKF-MPLPWKPEL-----------VFTGTSVMGINPETGKFCSHL 184 (375)
Q Consensus 138 ~-~~~~~i~~rW~m~~~~-~~Lpw~~~i-----------~v~G~S~l~~n~~~GkI~~H~ 184 (375)
. .++.++..||++.+.. .++-|++.+ .++|.|++.+|.+ |.|++|+
T Consensus 107 ~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~-GlI~kh~ 165 (202)
T KOG4457|consen 107 PHIDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGN-GLIYKHT 165 (202)
T ss_pred ccCCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCC-ceEEeee
Confidence 5 4458899999999875 233455532 3899999999988 9999996
No 4
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.29 E-value=3.5e-11 Score=101.60 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=81.9
Q ss_pred ccccccCCCeEEeCCCC--cccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecC----C-CCCCcE
Q 017224 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPEL 163 (375)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i 163 (375)
...++|++|++|.||.. ...|++++++.++.+...+ +.+++++++...+++.+.+.|+|++.++. + +.+.++
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g~~~ 97 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASGKTY 97 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCCCEE
Confidence 37899999999999975 4678999999998776444 77899998877663499999999999832 2 356688
Q ss_pred EEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 164 VFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 164 ~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
.+.|++.++|+ + |||++|++|||...
T Consensus 98 ~~~~~~~~~~~-~-gkI~~~~~y~D~~~ 123 (129)
T TIGR02096 98 SIRGVTFFVFD-D-GKIKRETTYYNLAT 123 (129)
T ss_pred EeeeeEEEEEe-C-CEEEEEEEEecHHH
Confidence 99999999998 6 99999999999765
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.11 E-value=6.1e-10 Score=94.25 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=90.7
Q ss_pred HHhhccccccCCC--ccccccCCCeEEeCCC-CcccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEe
Q 017224 79 LYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKF 154 (375)
Q Consensus 79 Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~ 154 (375)
+++.|...+..+. ...++|++|+.+.+|. ....|+++|+..+..+...| +.++++.++...| +.+.++|+++|.|
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~g-d~v~~~~~~~Gth 81 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEG-DRVAVRWTFTGTH 81 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CEEEEEEEEEEee
Confidence 3444544444333 4789999999999997 68999999999999888777 8999999999888 9999999999999
Q ss_pred cC-----CCCCCcEEEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 155 MP-----LPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 155 ~~-----Lpw~~~i~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
.. -|-+..+.+.|++.++|++ |||++|..+||..+
T Consensus 82 ~g~~~g~~ptgk~v~~~~~~~~~~~~--gkI~e~~~~~D~~~ 121 (126)
T PF07366_consen 82 TGEFMGIPPTGKPVEFRGMSIFRFED--GKIVEEWVYFDELS 121 (126)
T ss_dssp SSEBTTBE-TTEEEEEEEEEEEEEET--TEEEEEEEEECHHH
T ss_pred cCCcCCcCCCCCEEEEEEEEEEEEEC--CEEEEEEEEECHHH
Confidence 43 1355678999999999994 99999999999765
No 6
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.06 E-value=6.5e-10 Score=93.17 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=74.2
Q ss_pred ccccccCCCeEEeCCCC--cccChHHHHHHHHHHhh-hcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEE
Q 017224 92 IDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLKM-VFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGT 168 (375)
Q Consensus 92 ~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~~-~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~ 168 (375)
...++|++|++|.||.. .++|++++++.+..+.. ....++.+......+ +.+.+.|+++... -+..+.+.|+
T Consensus 23 ~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~----~g~~~~~~~~ 97 (122)
T cd00781 23 GIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHG-GEAAFAFRVEFEW----EGQPCVVRVI 97 (122)
T ss_pred HHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecC-CEEEEEEEEEEEe----CCceEEEEEE
Confidence 37899999999999975 49999999998877643 334444444444455 6788899998764 2567899999
Q ss_pred EEEEEeCCCCcEEEEeeeecccC
Q 017224 169 SVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 169 S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
+.++|+.+ |||.++++|||...
T Consensus 98 ~v~~~~~d-GkI~~~~~y~d~~~ 119 (122)
T cd00781 98 DVMRFDAD-GRIVSMRAYWGPVN 119 (122)
T ss_pred EEEEECCC-ccChHHHHhcCccc
Confidence 99999877 99999999999865
No 7
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.88 E-value=1.9e-08 Score=79.73 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=75.4
Q ss_pred cccccCCCeEEeCCCCcccChHHHHHHHHHHhh-hcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEEE
Q 017224 93 DRTAYDEQVKFRDPITKHDTISGYLFNISMLKM-VFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVM 171 (375)
Q Consensus 93 ~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~~-~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l 171 (375)
..++|++||+|.||.....|.+++...++.+.. ....+++++++...| +.+.+.|++++.. .+-+..+.+.|++.+
T Consensus 16 i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-d~v~~~~~~~~~~--~~~g~~~~~~~~~~~ 92 (102)
T PF12680_consen 16 IAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADG-DRVVVEWTVTGTT--PPTGQPISFRGCSVF 92 (102)
T ss_dssp HHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEET-TEEEEEEEEEEEE--TTTSCEEEEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcC-CEEEEEEEEEEEE--cCCCCEEEEEEEEEE
Confidence 679999999999998899999999999887754 457899999998888 8999999999974 356778899999999
Q ss_pred EEeCCCCcEEEE
Q 017224 172 GINPETGKFCSH 183 (375)
Q Consensus 172 ~~n~~~GkI~~H 183 (375)
+|. + |||++|
T Consensus 93 ~~~-d-gkI~~~ 102 (102)
T PF12680_consen 93 RFE-D-GKIVEH 102 (102)
T ss_dssp EEE-T-TEEEEE
T ss_pred EEE-C-CEEEEC
Confidence 996 5 999998
No 8
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.94 E-value=5.2e-05 Score=65.48 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=76.4
Q ss_pred HHHHHHHHhhccccccCCCccccccCCC-eEEeCCCCcccChHHHHHHHHHH-hhhcccEEEEEEeEEcCCcEEEEEEEE
Q 017224 73 EWLVGFLYDDLPHLFDDQGIDRTAYDEQ-VKFRDPITKHDTISGYLFNISML-KMVFRPAFQLHWVKQTGPYEITTRWTM 150 (375)
Q Consensus 73 ~~~~~~Lr~dy~~lf~~~~~~~~iY~~d-v~F~DP~~~~~Gl~~y~~~~~~L-~~~~~~~f~v~~~~~~~~~~i~~rW~m 150 (375)
.++++.+-+.+....... ....+.++| ++..-|+-.++|+++..+.++.+ ..+....++||.+...| .+.+.+++
T Consensus 4 ~~vV~~F~~a~~~~D~~~-a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg--~~VltER~ 80 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDA-ALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADG--DVVLTERT 80 (125)
T ss_dssp HHHHHHHHHHHHHT-HHH-HHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEET--TEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHH-HHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecC--CEEEEEeE
Confidence 345555555555444211 245778999 88889999999999999988876 45557889999998766 66777777
Q ss_pred EEEecCCCCCCcEEEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 151 VMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 151 ~~~~~~Lpw~~~i~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
---. ...++..+.+--+-++.+. + |||+.-|||||...
T Consensus 81 D~l~-~~dG~~~~~~~V~GvfEv~-d-GkI~~WRDYFD~~~ 118 (125)
T PF07858_consen 81 DVLR-FADGPLRIQFPVCGVFEVR-D-GKITLWRDYFDLAD 118 (125)
T ss_dssp EEEE-ETTTTEEEEEEEEEEEEEE-T-TEEEEEEEE--HHH
T ss_pred eeee-eecCCeEEEEEEEEEEEEE-C-CEEEEEeccCCHHH
Confidence 6654 1122234444444455555 5 99999999999876
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.26 E-value=0.0032 Score=61.70 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=66.8
Q ss_pred cccccCCCeEEeCCCC--cccChHHHHHHHHHH--hhhcccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEE
Q 017224 93 DRTAYDEQVKFRDPIT--KHDTISGYLFNISML--KMVFRPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGT 168 (375)
Q Consensus 93 ~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L--~~~~~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~ 168 (375)
..+++++||+|.+|.. .+.|.+++...|..+ ...+ ..+.+......| +.+.+.|... +-+..+.+.|+
T Consensus 225 l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~v~~~~~------~~~~~~~~~~v 296 (324)
T TIGR02960 225 LTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGA-AGMRLLPTIANG-QPAAAMYMRR------PDAERHTAFQL 296 (324)
T ss_pred HHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccC-CceeEEEeeecC-CceEEEEEEc------CCCCeeeeeEE
Confidence 7899999999999985 499999999888776 3322 344444444566 6777776311 12445789999
Q ss_pred EEEEEeCCCCcEEEEeeeecccC
Q 017224 169 SVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 169 S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
..++|. + |||.....|||...
T Consensus 297 ~~~~~~-d-GkI~~~~~~~~~~~ 317 (324)
T TIGR02960 297 HVLEIR-G-GRITHVTAFLDGPS 317 (324)
T ss_pred EEEEEc-C-CcEEEEEEEcCCHH
Confidence 999995 6 99999999999765
No 10
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.17 E-value=0.0033 Score=62.23 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=74.4
Q ss_pred cCHHHHHHHHHhhccccccCCC--ccccccCCCeEEeCCCCc--ccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEE
Q 017224 70 VDVEWLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEI 144 (375)
Q Consensus 70 ~~~~~~~~~Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i 144 (375)
.+.+...+.+++.|..+-. ++ ...+++++||++.+|... +.|.+++...+..+.... ...+.+......| +.+
T Consensus 211 ~~~~~~~~~v~~~~~A~~~-gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g-~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAAFEA-YDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANG-QPA 288 (339)
T ss_pred CCChHHHHHHHHHHHHHhc-CCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCC-CeE
Confidence 3444444444444444433 33 377999999999999875 999999998887763222 1334443334445 566
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
.+.+. .. .-+..+.+.|++.++++ | |||.+-++|||...
T Consensus 289 ~~~~~---~~---~~g~~~~~~~v~v~~v~-d-GkI~~~~~y~d~~~ 327 (339)
T PRK08241 289 FAQYM---RD---PDGGGHRPWALHVLELR-G-GRIAHVTSFLDTTL 327 (339)
T ss_pred EEEEE---Ec---CCCCeeecceEEEEEEe-C-CEEEEEEEEcChhh
Confidence 66432 11 22446788899999999 6 99999999999743
No 11
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=95.87 E-value=0.11 Score=45.50 Aligned_cols=100 Identities=8% Similarity=-0.022 Sum_probs=70.2
Q ss_pred HHHHHHHhhccccccCCCc--cccccCCCeEEeCCC-CcccChHHHHHHHHHHhhhc--ccEEEEEEeE--EcCCcEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQGI--DRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVF--RPAFQLHWVK--QTGPYEITT 146 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~~--~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~--~~~f~v~~~~--~~~~~~i~~ 146 (375)
+.++.+-.|+...+..++. ..+.|+||++|-||. -.++|.+.|++.++.+..++ ...|++.++. ..| +.+++
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-D~a~~ 88 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-DVAFV 88 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-CEEEE
Confidence 4555555665555554443 678899999999997 68999999999999887655 5688888877 566 77665
Q ss_pred EEEEEEEecCCCCCCcEEEEEEEEEEEeC
Q 017224 147 RWTMVMKFMPLPWKPELVFTGTSVMGINP 175 (375)
Q Consensus 147 rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~ 175 (375)
.=-.++.- +.+.++.....|.-++.|..
T Consensus 89 ~~~~~~~~-~~~dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 89 TALLLLTG-TKKDGPPADLAGRATYVFRK 116 (137)
T ss_pred EEeeeeec-cCCCCcchhheeeeEEEEEE
Confidence 54444443 23556666677777777753
No 12
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=95.78 E-value=0.21 Score=41.22 Aligned_cols=80 Identities=6% Similarity=-0.058 Sum_probs=53.0
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCCeEEeCCC-CcccChHHHHHHHHHHhh-hcc---cEEEEEEeEEcCCcEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKM-VFR---PAFQLHWVKQTGPYEITT 146 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~-~~~---~~f~v~~~~~~~~~~i~~ 146 (375)
+.++.|.+.|...+..++ ...++|++|+.|.++. ..+.|.+++..++..+.. ... .++++.++...+++.+.+
T Consensus 4 ~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~ 83 (128)
T TIGR02246 4 RAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV 83 (128)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence 346666666766666555 3889999999999544 467999999998875532 222 355556666566566665
Q ss_pred EEEEEEE
Q 017224 147 RWTMVMK 153 (375)
Q Consensus 147 rW~m~~~ 153 (375)
.+..++.
T Consensus 84 ~~~~~~~ 90 (128)
T TIGR02246 84 HAIQTIT 90 (128)
T ss_pred EEEEEEE
Confidence 5444443
No 13
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=95.64 E-value=0.15 Score=40.67 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=66.2
Q ss_pred HHHhhccccccCCC--ccccccCCCeEEeCCC-----CcccChHHHHHHHHHHhh--hcccEE-EEEEeEEcCC---cEE
Q 017224 78 FLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI-----TKHDTISGYLFNISMLKM--VFRPAF-QLHWVKQTGP---YEI 144 (375)
Q Consensus 78 ~Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~-----~~~~Gl~~y~~~~~~L~~--~~~~~f-~v~~~~~~~~---~~i 144 (375)
.|...|...+..+. .+..+|++|++|..|. ....|++++...++.+.. ....++ .-..+...++ ..+
T Consensus 3 ~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 82 (124)
T cd00531 3 QFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVVV 82 (124)
T ss_pred HHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEEE
Confidence 45555665555332 4889999999999998 578999988888876643 122222 1122222322 235
Q ss_pred EEEEEEEEEecCCCCCCcEEEEEEEEEEEeC--CCCcEEEEeeeec
Q 017224 145 TTRWTMVMKFMPLPWKPELVFTGTSVMGINP--ETGKFCSHLDLWD 188 (375)
Q Consensus 145 ~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~--~~GkI~~H~DyWD 188 (375)
...|.+..... +....+.|.-...+.. +.+||...+.+||
T Consensus 83 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 83 SVFGVLRTRGD----GEQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEccC----CceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 56677666541 3445566766666663 2288999988885
No 14
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=95.01 E-value=0.22 Score=43.51 Aligned_cols=111 Identities=12% Similarity=-0.032 Sum_probs=79.5
Q ss_pred HHHHHHhhccccccCCC--ccccccCCCeEEeCCCC------cccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEE
Q 017224 75 LVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPIT------KHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEIT 145 (375)
Q Consensus 75 ~~~~Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~~------~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~ 145 (375)
..+.++.-|..+.. ++ -+.+++++|+++.=|.. -..|.+.....|..+...+ .+++++..+...++..+.
T Consensus 6 ~~~~v~~~f~a~~~-GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~ 84 (133)
T COG3631 6 NTDLVRRYFAALSR-GDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGA 84 (133)
T ss_pred hhhHHHHHHHHHhc-CCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEE
Confidence 34455555555544 33 38899999999984432 3346666677777776666 889999999998877776
Q ss_pred EEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 146 TRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 146 ~rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
+.|.-.... .-+..+.-.=+..+++. + |||.+-++|||...
T Consensus 85 v~~~~~~~~---~~G~~~~~~~~~v~~vr-d-GrI~~~~~y~D~~~ 125 (133)
T COG3631 85 VFRTRGRVS---RTGKPYENRYAFVIRVR-D-GRITRYREYVDTLA 125 (133)
T ss_pred EEEecCccc---ccCceeecceEEEEEEe-C-CEEEEEEEEechHh
Confidence 777665332 23555666778888998 4 99999999999877
No 15
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=94.47 E-value=0.0043 Score=62.94 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=89.2
Q ss_pred CccC--HHHHHHHHHhhccccccCCCccccccCCCeEEeCCCCcccChHHHHHHHHHHh---hhc--ccEEEEEEeEEcC
Q 017224 68 STVD--VEWLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLK---MVF--RPAFQLHWVKQTG 140 (375)
Q Consensus 68 ~~~~--~~~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~---~~~--~~~f~v~~~~~~~ 140 (375)
+.+| +..+++.|+...+.|+. ....-++|+.+|.|.|+-+.+.+|..|..|+..++ .++ ++...|.-+++.=
T Consensus 65 YqIN~la~~~l~mL~lQ~~~L~~-mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPi 143 (483)
T KOG2546|consen 65 YQINTLAGHALRMLDLQAPQLRY-MESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPI 143 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccc
Confidence 8888 89999999999999987 55567999999999999999999999999987764 222 4455666666666
Q ss_pred CcEEEEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCC
Q 017224 141 PYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETG 178 (375)
Q Consensus 141 ~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~~~G 178 (375)
+..+++|+-||. +.+|.++-.++|+++..|+.. |
T Consensus 144 -d~~mLd~igHGI--r~~~~~rg~~~g~~t~~l~rs-~ 177 (483)
T KOG2546|consen 144 -DYSMLDDIGHGI--RGSWETRGRFDGTSTGKLSRS-G 177 (483)
T ss_pred -cceeeecccccc--ccccccccCcCcccccccCCC-C
Confidence 689999999998 668999999999999999965 5
No 16
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=94.27 E-value=0.71 Score=37.46 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=59.2
Q ss_pred HHHHHHHhhccccccCCCccccccCCCeEEeCCCC--cccChHHHHHHHHHHh-hhcccEEEEEEeE--EcCCcEEEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPIT--KHDTISGYLFNISMLK-MVFRPAFQLHWVK--QTGPYEITTRW 148 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~~--~~~Gl~~y~~~~~~L~-~~~~~~f~v~~~~--~~~~~~i~~rW 148 (375)
++++.+.+-+.+-..+ ...++|++|+.+.++.. .+.|.++++.++.... ..-..++++.++. ..+ +.+.+.+
T Consensus 3 ~~~~~~~~a~~~~D~~--~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~a~~~~ 79 (121)
T PF13474_consen 3 ALLEEWIEAFERGDID--ALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSG-DVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHCT-HH--HHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhCCHH--HHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECC-CEEEEEE
Confidence 3444444444333222 37799999999998654 6689999999887653 3444566665543 344 7888888
Q ss_pred EEEEEecCCCCCCcEEEEEEEEEEEe
Q 017224 149 TMVMKFMPLPWKPELVFTGTSVMGIN 174 (375)
Q Consensus 149 ~m~~~~~~Lpw~~~i~v~G~S~l~~n 174 (375)
.+++... .-+......|..++.|-
T Consensus 80 ~~~~~~~--~~~~~~~~~~r~t~v~~ 103 (121)
T PF13474_consen 80 EFRLRFR--NDGEEIEMRGRATFVFR 103 (121)
T ss_dssp EEEEEEE--CTTCEEEEEEEEEEEEE
T ss_pred EEEEEEe--cCCccceeeEEEEEEEE
Confidence 8877663 33444445555554444
No 17
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=94.18 E-value=1.2 Score=39.11 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=81.5
Q ss_pred CeEEEEeCCceEEEeccC--C-cccchhhHHhhhcccCCCCCCCCCCCCCceEEEe-ecCC---Cc--EEEEEEEecCCC
Q 017224 229 NYEVRRYSPFIVVETNGD--K-LSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQA-YDNE---LK--KVSIQIVLPQDK 299 (375)
Q Consensus 229 ~yEiR~Y~~~~wv~t~~~--~-~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~-~~~~---~~--~~tmsF~lP~~~ 299 (375)
+++|+..++..++..... - .....+|.+|+.++..+|-. .+ +.+... .+.+ .. .+-+++.+|...
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~~~ 75 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPDDF 75 (156)
T ss_pred ceEEEEccCceEEEEEeecCchhHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCCCCCCChHHceeeEEEEeCCCc
Confidence 467888888777765532 1 22568999999999766532 22 233322 2221 12 377899999763
Q ss_pred CCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHH-HHHHHHhCCCCccCcEEEEEEc
Q 017224 300 DMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKE-LHTSLIRDGLRPKIGCLLARYN 364 (375)
Q Consensus 300 q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~-L~~~L~~~G~~~~~~~~~A~Yd 364 (375)
. +| +.+..+.+.+.|++++||..+.|. -+.+.+-... +.+||..+|.+..+.+.+-.|.
T Consensus 76 ~---~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~~~~p~~E~Y~ 135 (156)
T PRK10016 76 V---LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQMAPKPCFEVYL 135 (156)
T ss_pred c---cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCccCCCCCEEEeC
Confidence 2 22 223479999999999999999996 3446665655 7899999999887554444444
No 18
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=93.08 E-value=0.95 Score=40.53 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=84.1
Q ss_pred CeEEEEeCCceEEEec--cCCcccchhhHHhhhcccCCCCCCCCCCCCCceEEEeec-CC-----CcEEEEEEEecCCCC
Q 017224 229 NYEVRRYSPFIVVETN--GDKLSGSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYD-NE-----LKKVSIQIVLPQDKD 300 (375)
Q Consensus 229 ~yEiR~Y~~~~wv~t~--~~~~A~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~-~~-----~~~~tmsF~lP~~~q 300 (375)
++||+..++..+|... +...-..++|.+|+.+-.-+|--. -++.-+....+ .+ .=.+-.+-.+|...+
T Consensus 2 dv~I~e~p~~~VA~~rh~G~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~~ 77 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVGDPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVPEPIP 77 (154)
T ss_pred CceEEecCCceEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcCCccC
Confidence 6899999999988765 333345789999999986554322 23333332221 11 125677888884333
Q ss_pred CCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcEEEEEE
Q 017224 301 MSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARY 363 (375)
Q Consensus 301 ~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~~~A~Y 363 (375)
+++..|..-+.+++.+||.+|.|.. ++-...-..-+.+||.+.|....+.+.+.+|
T Consensus 78 ------~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~~~d~P~~e~y 133 (154)
T COG3449 78 ------ENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYEPRDRPILERY 133 (154)
T ss_pred ------CCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcccCCCchHHHH
Confidence 4577899999999999999999974 3333334455677888888888877766666
No 19
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=91.29 E-value=1.7 Score=34.05 Aligned_cols=96 Identities=13% Similarity=-0.079 Sum_probs=57.3
Q ss_pred HHHHHHHhhccccccCCCccccccCCCeEEeCCCCcccChHHHHHHHHHHh-hhcccEEEEEEeEEcCCcEEEEEEEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRDPITKHDTISGYLFNISMLK-MVFRPAFQLHWVKQTGPYEITTRWTMVM 152 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~~~~~Gl~~y~~~~~~L~-~~~~~~f~v~~~~~~~~~~i~~rW~m~~ 152 (375)
++.+.+.+-+.+-... ...++|++|+.|..|.....|.+.+...+..-. .....+++..++...+ +.+.+.=+.+.
T Consensus 3 a~~~~~~~A~~~~D~~--~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g-d~a~~~~~~~~ 79 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDID--ALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLG-DTAVVRGRWTF 79 (107)
T ss_dssp HHHHHHHHHHHTTHHH--HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEET-TEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHH--HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEEC-CEEEEEEEEEE
Confidence 3444444444332221 378999999999999998889888777665421 1123455556666666 66555444444
Q ss_pred EecCCCCCCcEEEEEEEEEEEe
Q 017224 153 KFMPLPWKPELVFTGTSVMGIN 174 (375)
Q Consensus 153 ~~~~Lpw~~~i~v~G~S~l~~n 174 (375)
.... .+..+.+.|..+..+-
T Consensus 80 ~~~~--~g~~~~~~~~~~~v~~ 99 (107)
T PF14534_consen 80 TWRG--DGEPVTIRGRFTSVWK 99 (107)
T ss_dssp EETT--TTEEEEEEEEEEEEEE
T ss_pred EEec--CCceEEEEEEEEEEEE
Confidence 4321 3455667776666654
No 20
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.55 E-value=0.88 Score=39.03 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHhhccccccCCCccccccCCCeEEeC-CCCcccChHHHHHHHH-HHhhhcccEEEEEEeEEcCCcEEEEEEEEE
Q 017224 74 WLVGFLYDDLPHLFDDQGIDRTAYDEQVKFRD-PITKHDTISGYLFNIS-MLKMVFRPAFQLHWVKQTGPYEITTRWTMV 151 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~~~~~iY~~dv~F~D-P~~~~~Gl~~y~~~~~-~L~~~~~~~f~v~~~~~~~~~~i~~rW~m~ 151 (375)
++++.+..-+++...+. ....+..+|-++.+ |+.+++|.++-...+. .+.....-.|+|+.+...| +.+.. =++-
T Consensus 10 ~~V~aF~aA~~~~d~~~-avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~~~ef~I~riAadg-~~Vlt-ER~D 86 (130)
T COG4308 10 RTVEAFLAALQEDDGDA-AVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGILGFEFKILRIAADG-GAVLT-ERLD 86 (130)
T ss_pred HHHHHHHHHHHhcCccH-HHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcceeEEEEEEEeccc-ceehh-hhhh
Confidence 45666666666554422 46677778877776 4679999987665444 2233345689999998776 43322 2222
Q ss_pred EEecCCCCCC-cEEEEEEEEEEEeCCCCcEEEEeeeecccC
Q 017224 152 MKFMPLPWKP-ELVFTGTSVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 152 ~~~~~Lpw~~-~i~v~G~S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
.+ .-++ -..+.-|-.|... + |||..-|||+|+..
T Consensus 87 -~~---~~g~~~~~~~V~GvfEV~-~-~rI~~WRDYFDv~~ 121 (130)
T COG4308 87 -AR---IDGPLWVQFWVCGVFEVE-D-GRIVLWRDYFDVND 121 (130)
T ss_pred -hh---ccCCcEEEEEEEEEEEEe-C-CEEEeehhhhhHHH
Confidence 11 1122 1234445566676 3 89999999999876
No 21
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=90.09 E-value=6.5 Score=32.63 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=81.7
Q ss_pred CeEEEEeCCceEEEeccCC---c-c-cchhhHHhhhcccCCCCCCCCCCCCCceEEEeecC----CCc--EEEEEEEecC
Q 017224 229 NYEVRRYSPFIVVETNGDK---L-S-GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQAYDN----ELK--KVSIQIVLPQ 297 (375)
Q Consensus 229 ~yEiR~Y~~~~wv~t~~~~---~-A-~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~~~~----~~~--~~tmsF~lP~ 297 (375)
+++|+.-++..++...... . . ....+.+|..++.-.+... ...|.+....+. ... .+.+++-++.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEVDE 77 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEECT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEEcc
Confidence 4788888888887655431 1 1 4678888888875332111 444555443321 122 4445555544
Q ss_pred CCCCCCCCCCCCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHH-HHHhCCCCccCcE-EEEEEcCC
Q 017224 298 DKDMSSLPDPNQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHT-SLIRDGLRPKIGC-LLARYNDP 366 (375)
Q Consensus 298 ~~q~~~~P~P~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~-~L~~~G~~~~~~~-~~A~Yd~P 366 (375)
.. +..+++.....|++.+|+..|.|.. +.+.+....|.. +|.+.|+....++ +-...+.|
T Consensus 78 ~~-------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~~~~~~~E~y~~~~ 139 (155)
T PF06445_consen 78 DV-------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYERRDGPDFEIYLNDP 139 (155)
T ss_dssp TC-------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEEESSEEEEEEESST
T ss_pred cc-------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCccCCCCcEEEECCCC
Confidence 32 4467899999999999999999987 778888899999 9999999544443 33344444
No 22
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=89.84 E-value=1.5 Score=38.40 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=48.3
Q ss_pred CeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcEEEEEEcCCCCCc
Q 017224 311 TLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCLLARYNDPGQTW 370 (375)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~~~A~Yd~P~~tp 370 (375)
+|.|++.|+..++.++..|...+ .+.+.-.+|.+++.++|+... .++...||.|.-++
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~~-~~~~i~~D~p~~~~ 59 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVPK-EWVAVYYDNPDEVP 59 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCCC-cEEEEECCCCCCCC
Confidence 58999999999999999998753 467888999999999998864 47888889985543
No 23
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=89.01 E-value=1.1 Score=38.58 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=65.7
Q ss_pred cCCCeEEeCCCCcccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecC----C-CCCCcEEEEEEEE
Q 017224 97 YDEQVKFRDPITKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMP----L-PWKPELVFTGTSV 170 (375)
Q Consensus 97 Y~~dv~F~DP~~~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~----L-pw~~~i~v~G~S~ 170 (375)
+-+|+++-. +.-.|+++|..++-..+.-+ +-+|++..+...+ +.+..|=++.|.++. + |-++++.+.-.--
T Consensus 30 fv~~~v~~n--g~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~-~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~vf 106 (131)
T COG5485 30 FVDGNVMHN--GRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEG-DRVAARLTFDCTPSGEIMGIPPNGKRVRFSENVF 106 (131)
T ss_pred CCcCeeeeC--CceechHHHHHHHHhhHhhCCCcceEEEEEeecC-CceEEEEEEccCcCceEeccCCCCcEEEeehhhh
Confidence 445555542 56789999999877666555 7899999988777 889999999987643 2 4666777766666
Q ss_pred EEEeCCCCcEEEEeeeecccC
Q 017224 171 MGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 171 l~~n~~~GkI~~H~DyWD~~~ 191 (375)
|.|- + |||++|.-..|..+
T Consensus 107 y~f~-~-~KI~~vwsv~Dk~a 125 (131)
T COG5485 107 YEFE-N-GKIVEVWSVIDKMA 125 (131)
T ss_pred hhhc-C-CeEEeeehhccHHH
Confidence 6665 4 89999976666554
No 24
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=87.91 E-value=2.4 Score=37.99 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=51.1
Q ss_pred CeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccC-cEEEEEEcCCCCCcc
Q 017224 311 TLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKI-GCLLARYNDPGQTWS 371 (375)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~-~~~~A~Yd~P~~tp~ 371 (375)
+|.|++.|+..||..+=.| .+....+-.++|.+|.+++|+.+.. ...--.||+|--||+
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~Tp~ 61 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTTPA 61 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCCCH
Confidence 6899999999999999999 6888999999999999999998874 566777888865653
No 25
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=85.03 E-value=14 Score=32.89 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=61.2
Q ss_pred cccccCCCeEEeCCCC------cccChHHHHHHHHHHhhhc-cc-EEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEE
Q 017224 93 DRTAYDEQVKFRDPIT------KHDTISGYLFNISMLKMVF-RP-AFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELV 164 (375)
Q Consensus 93 ~~~iY~~dv~F~DP~~------~~~Gl~~y~~~~~~L~~~~-~~-~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~ 164 (375)
-.++|++|=.=--..+ -++|.+++.+.-..+-.+| +- +..|.-...++++.+.+.-.=++.. .+|.-|+..
T Consensus 38 Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i-~fpGypeg~ 116 (162)
T PF03284_consen 38 RHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKI-LFPGYPEGY 116 (162)
T ss_dssp GGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE---TTS--EE
T ss_pred hheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccce-ecCCCCccc
Confidence 4467777765544443 5799999998655555555 32 3344333345678999999999987 778888766
Q ss_pred EEEE--EEEEEeCCCCcEEEEeeeecccC
Q 017224 165 FTGT--SVMGINPETGKFCSHLDLWDSIK 191 (375)
Q Consensus 165 v~G~--S~l~~n~~~GkI~~H~DyWD~~~ 191 (375)
.+-. --+.|+ + |||...|+|.|..+
T Consensus 117 y~NHfiHsFel~-n-GkI~~~REFmNp~q 143 (162)
T PF03284_consen 117 YENHFIHSFELE-N-GKIKRNREFMNPFQ 143 (162)
T ss_dssp EEEEEEEEEEEE-T-TEEEEEEEEE-HHH
T ss_pred ceeeeEEEEEee-C-CEEEeehhhcCHHH
Confidence 5433 335555 3 99999999988776
No 26
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=80.40 E-value=17 Score=29.56 Aligned_cols=80 Identities=13% Similarity=-0.027 Sum_probs=53.4
Q ss_pred HHHHHHHhhccccccCCC--ccccccCCCeEEeCCC---CcccChHHHHHHHHHHhhhc-c-cEEEE-EEeEEcCCcEEE
Q 017224 74 WLVGFLYDDLPHLFDDQG--IDRTAYDEQVKFRDPI---TKHDTISGYLFNISMLKMVF-R-PAFQL-HWVKQTGPYEIT 145 (375)
Q Consensus 74 ~~~~~Lr~dy~~lf~~~~--~~~~iY~~dv~F~DP~---~~~~Gl~~y~~~~~~L~~~~-~-~~f~v-~~~~~~~~~~i~ 145 (375)
+.|+.|...|....+.+. ...++|++|++|.=+- ..+.|++++...+.....-. . .++.. ..+...+ +.+.
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg-d~A~ 85 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG-DTAT 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC-CEEE
Confidence 355666666766666555 4889999999997664 58999999999887653211 1 11111 1222355 7899
Q ss_pred EEEEEEEEe
Q 017224 146 TRWTMVMKF 154 (375)
Q Consensus 146 ~rW~m~~~~ 154 (375)
++|.+...+
T Consensus 86 ~~~~~~~~~ 94 (127)
T PF13577_consen 86 VRSYVLATH 94 (127)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999886
No 27
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=79.90 E-value=2.7 Score=34.97 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=47.6
Q ss_pred CeeEEEeCCeEEEEEEecCcCChhH-HHHHHHHHHHHHHhCCCC-ccCcEEEEEEcCCC
Q 017224 311 TLDLRKVEGGIAAVLKFSGKPTEDI-VHEKEKELHTSLIRDGLR-PKIGCLLARYNDPG 367 (375)
Q Consensus 311 ~V~i~~~p~~~vaV~~F~G~~te~~-~~~~~~~L~~~L~~~G~~-~~~~~~~A~Yd~P~ 367 (375)
+|+|++.|+.+++..+..|...+.. +.+..++|.+++...++. ....++...||.|.
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLSTDPGPIIGIYYDNPN 60 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCSSSSEEEEEEECCT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcccCCCcceeEEecccc
Confidence 5899999999999999999988777 889999999999988876 34466777777763
No 28
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.51 E-value=17 Score=31.21 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=42.2
Q ss_pred CcccChHHHHHHHHHHhhhc-ccEEEEEEeEEcCCcEEEEEEEEEEEecCCCCCCcEEEEEEEEEEEeCCCCcEEEEeee
Q 017224 108 TKHDTISGYLFNISMLKMVF-RPAFQLHWVKQTGPYEITTRWTMVMKFMPLPWKPELVFTGTSVMGINPETGKFCSHLDL 186 (375)
Q Consensus 108 ~~~~Gl~~y~~~~~~L~~~~-~~~f~v~~~~~~~~~~i~~rW~m~~~~~~Lpw~~~i~v~G~S~l~~n~~~GkI~~H~Dy 186 (375)
+--.|.+++.++|..++..- ..+..|......| +-+++.---.. .-|+ .-...-+-++++++ |||++|
T Consensus 41 ~vpdGk~~fv~fFt~ffk~~P~~~~kiVr~iadG-dLV~vh~hqt~---~~pg--~~~~v~~DtfR~dd--gkivEH--- 109 (129)
T COG4922 41 MVPDGKDGFVRFFTEFFKEKPRISTKIVRVIADG-DLVTVHYHQTV---SEPG--SYTTVTFDTFRIDD--GKIVEH--- 109 (129)
T ss_pred CCCCchHHHHHHHHHHHHhCccccceeeEEeccC-CEEEEEEeeee---CCCC--cceeEEEEEEEeeC--Cceeec---
Confidence 44579999999987664222 3455555555566 55554322221 1121 12334456788884 899887
Q ss_pred ecccC
Q 017224 187 WDSIK 191 (375)
Q Consensus 187 WD~~~ 191 (375)
||...
T Consensus 110 WDviq 114 (129)
T COG4922 110 WDVIQ 114 (129)
T ss_pred cchhh
Confidence 66665
No 29
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=74.17 E-value=11 Score=30.71 Aligned_cols=77 Identities=10% Similarity=-0.049 Sum_probs=50.8
Q ss_pred HHHHhhcccccc-CCCccccccCCCeEEeCCCCc--ccChHHHHHHHHHHhhhcccEEEEEEeEEc--CCcEEEEEEEEE
Q 017224 77 GFLYDDLPHLFD-DQGIDRTAYDEQVKFRDPITK--HDTISGYLFNISMLKMVFRPAFQLHWVKQT--GPYEITTRWTMV 151 (375)
Q Consensus 77 ~~Lr~dy~~lf~-~~~~~~~iY~~dv~F~DP~~~--~~Gl~~y~~~~~~L~~~~~~~f~v~~~~~~--~~~~i~~rW~m~ 151 (375)
..++.-|..+.. +...+..+|++|..+.++... +.|.++..+.+..|-.-. +++.+..+..+ ......+-++++
T Consensus 4 ~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~-~~~~i~~~d~qp~~~~~~~i~i~v~ 82 (118)
T PF02136_consen 4 SFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG-VQHRITSVDCQPSPSSDGSILITVT 82 (118)
T ss_dssp HHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS-EEEEEEEEEEEEEEECCSEEEEEEE
T ss_pred HHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc-cEEEecccccccccccCCcEEEEEE
Confidence 344455554444 233588999999999999887 999999998877663222 36777666554 223345566667
Q ss_pred EEe
Q 017224 152 MKF 154 (375)
Q Consensus 152 ~~~ 154 (375)
|.+
T Consensus 83 G~~ 85 (118)
T PF02136_consen 83 GQF 85 (118)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 30
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=69.88 E-value=23 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=44.2
Q ss_pred CCCCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcEE
Q 017224 308 NQETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGCL 359 (375)
Q Consensus 308 ~d~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~~ 359 (375)
.|+++.+...|+.+++...|.|... .+.+..++|..++.++|++..+..+
T Consensus 78 ~~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~i~g~~~ 127 (153)
T COG4978 78 GDIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLEIIGPSR 127 (153)
T ss_pred CCCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCcccCceE
Confidence 6888999999999999999999864 4788899999999999999887643
No 31
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=63.79 E-value=38 Score=32.75 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=32.8
Q ss_pred ccccccCCCeEEe-CCC-------CcccChHHHHHHHHHHhhhccc--EEEEEEeEEcC
Q 017224 92 IDRTAYDEQVKFR-DPI-------TKHDTISGYLFNISMLKMVFRP--AFQLHWVKQTG 140 (375)
Q Consensus 92 ~~~~iY~~dv~F~-DP~-------~~~~Gl~~y~~~~~~L~~~~~~--~f~v~~~~~~~ 140 (375)
-+.+++++||+|. |.- ..+.|.+...+.|..+...+.. .+.+.-+...|
T Consensus 191 ~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG 249 (293)
T PRK09636 191 ALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNG 249 (293)
T ss_pred HHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECC
Confidence 3789999999999 642 4578999988888776544433 23333333455
No 32
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=62.23 E-value=35 Score=28.22 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=43.8
Q ss_pred eeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCcc---CcEEEEEEcCCC
Q 017224 312 LDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPK---IGCLLARYNDPG 367 (375)
Q Consensus 312 V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~---~~~~~A~Yd~P~ 367 (375)
+.|+..|+..++..++.|...++.+.+.-.+|.+++...+.... +..+...|+.|.
T Consensus 2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (158)
T smart00871 2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPSGPPYGVYYDDPD 60 (158)
T ss_pred CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCCccEEEEECCCCC
Confidence 68899999999999999998765677778889888888876533 346677777763
No 33
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=58.54 E-value=1e+02 Score=26.22 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=53.1
Q ss_pred CCCCccCHHHHHHHHHhhccccccCCCccccccCCCe---EEeC-CCCcccChHHHHHHHHHHhhhcccEEEEEEeEEcC
Q 017224 65 PPQSTVDVEWLVGFLYDDLPHLFDDQGIDRTAYDEQV---KFRD-PITKHDTISGYLFNISMLKMVFRPAFQLHWVKQTG 140 (375)
Q Consensus 65 ~~~~~~~~~~~~~~Lr~dy~~lf~~~~~~~~iY~~dv---~F~D-P~~~~~Gl~~y~~~~~~L~~~~~~~f~v~~~~~~~ 140 (375)
+....++..++.+.+++++..++.+.. -.....+|. -|.| +++.-.....+.+.+...=.-++||+...++....
T Consensus 16 ~~~~~~~~~~l~~sI~~~L~~LLnTr~-g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~~aI~r~EPRl~~~~V~~~~ 94 (133)
T TIGR03357 16 PSTRRSSAEQLRESIRRHLERLLNTRR-GSCASLPDYGLPDLNDLSLSSADDRRRIRRAIEQAIERYEPRLSSVRVTALE 94 (133)
T ss_pred CccccCCHHHHHHHHHHHHHHHHccCC-CccccccccCCcccccccccCHHHHHHHHHHHHHHHHhcCCCcCceEEEEec
Confidence 445677889999999999999988642 111122222 3333 33222223334443333334468998888876532
Q ss_pred --CcEEEEEEEEEEEec
Q 017224 141 --PYEITTRWTMVMKFM 155 (375)
Q Consensus 141 --~~~i~~rW~m~~~~~ 155 (375)
.....+++.+.+.++
T Consensus 95 ~~~~~~~l~f~I~~~l~ 111 (133)
T TIGR03357 95 DEEDPLALRFRIEAELD 111 (133)
T ss_pred CCCCccEEEEEEEEEEE
Confidence 244688888888874
No 34
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=45.18 E-value=91 Score=27.81 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCeeEEEeCCeEEEEEEecCcCChhHHHHHHHHHHHHHHhCCCCccCcE
Q 017224 310 ETLDLRKVEGGIAAVLKFSGKPTEDIVHEKEKELHTSLIRDGLRPKIGC 358 (375)
Q Consensus 310 ~~V~i~~~p~~~vaV~~F~G~~te~~~~~~~~~L~~~L~~~G~~~~~~~ 358 (375)
.+|.+.++++..++.+++-|. .+..+.+-..+|.+.|...|..+.+.+
T Consensus 3 ~e~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~~~~~~~ 50 (153)
T COG4978 3 VEVVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGIIPIGPY 50 (153)
T ss_pred cccEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCccccCCc
Confidence 468899999999999999998 788999999999999999997666543
No 35
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=30.33 E-value=3e+02 Score=22.39 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=56.9
Q ss_pred cchhhHHhhhcccCCCCCCCCCCCCCceEEEe-e-cCC--C--cEEEEEEEecCCCCCCCCCCCCCCCeeEEEeCCeEEE
Q 017224 250 GSTGFNDVAGYIFGKNSKTEKIPMTTPVFTQA-Y-DNE--L--KKVSIQIVLPQDKDMSSLPDPNQETLDLRKVEGGIAA 323 (375)
Q Consensus 250 ~~~gF~~L~~YI~G~N~~~~kI~MT~PV~~~~-~-~~~--~--~~~tmsF~lP~~~q~~~~P~P~d~~V~i~~~p~~~va 323 (375)
....|.+|++++...+....... .+++.-. . +.. . -.+.+++.++... .. ...+.+...|++.++
T Consensus 26 i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---~~----~~~~~~~~~p~~~y~ 96 (158)
T smart00871 26 IPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDTPEGEFRYDAGVEVSDEV---EN----PEGVETKEIPAGKYA 96 (158)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCCChhHeEEEEEEEeCCCC---CC----CCCceEEEECCCcEE
Confidence 35677888888755443221111 2333322 1 111 1 2344455554431 11 335889999999999
Q ss_pred EEEecCcCChhHHHHHHHHHHHHHHhCCCC
Q 017224 324 VLKFSGKPTEDIVHEKEKELHTSLIRDGLR 353 (375)
Q Consensus 324 V~~F~G~~te~~~~~~~~~L~~~L~~~G~~ 353 (375)
+..|.|. ..+.+.+-..+|..++..+|..
T Consensus 97 ~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~ 125 (158)
T smart00871 97 VFTHKGG-SYDEIQETWEAIYGEWLPNSGY 125 (158)
T ss_pred EEEEcCC-CHHHHHHHHHHHHHhhcccCCC
Confidence 9999993 4667888899999988887744
No 36
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=29.91 E-value=3.1e+02 Score=22.45 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHHHhhccccccCCCccccccCCCeEEeCCC-CcccChHHHHHHHHHHhhhcccEEEEEEe
Q 017224 77 GFLYDDLPHLFDDQGIDRTAYDEQVKFRDPI-TKHDTISGYLFNISMLKMVFRPAFQLHWV 136 (375)
Q Consensus 77 ~~Lr~dy~~lf~~~~~~~~iY~~dv~F~DP~-~~~~Gl~~y~~~~~~L~~~~~~~f~v~~~ 136 (375)
++++.-|..+..+...+..+|+++..|.=+- +.+.|.++....+..|.. ..+..+|..+
T Consensus 8 ~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~-~~~~~~i~~~ 67 (119)
T cd00780 8 AFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF-QKTKHKITTV 67 (119)
T ss_pred HHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC-cceEEEEEEE
Confidence 3444445555443335889999999999777 889999988887665532 1455555554
No 37
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=23.87 E-value=32 Score=33.11 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=9.6
Q ss_pred EEEeeeecccC
Q 017224 181 CSHLDLWDSIK 191 (375)
Q Consensus 181 ~~H~DyWD~~~ 191 (375)
.+|+||||--.
T Consensus 76 syhVdYWdYlG 86 (261)
T COG5429 76 SYHVDYWDYLG 86 (261)
T ss_pred EEeecccccCC
Confidence 58999999876
No 38
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=23.52 E-value=78 Score=29.58 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=10.2
Q ss_pred EEEEeeeecccCCCCcccc
Q 017224 180 FCSHLDLWDSIKNNDYFSL 198 (375)
Q Consensus 180 I~~H~DyWD~~~~~~~~s~ 198 (375)
..+|+||||-..=+..|+-
T Consensus 32 LafHVDYWDylGWkD~fa~ 50 (202)
T PF06764_consen 32 LAFHVDYWDYLGWKDPFAS 50 (202)
T ss_dssp EEEE-STT-SSSS--TT--
T ss_pred EEecCCcccCCCCCCccCC
Confidence 4689999999775555543
Done!