BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017225
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 291 DIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFXXXXX 350
+++V+ DG+G KT++EA+ APE+S R +I ++AG Y E N+ V +KK+N+MF
Sbjct: 8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRE-NVDVPKKKKNIMFLGDGR 66
Query: 351 XXXXXXXXRNVFDKLTTFHTAS 372
+NV D TTF++A+
Sbjct: 67 TSTIITASKNVQDGSTTFNSAT 88
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 288 IQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFXX 347
I A+ +V++DGTG +T+AEA+ AP+ S R +IYV+ G Y+E N++V K NLM
Sbjct: 1 IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKE-NVEVASNKMNLMIVG 59
Query: 348 XXXXXXXXXXXRNVFDKLTTFHTASF 373
NV D TTF +A+
Sbjct: 60 DGMYATTITGSLNVVDGSTTFRSATL 85
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 80 ISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMD 139
IS C KT P+LC+ +L + P S + + L S ++ + + ++ D
Sbjct: 6 ISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATD 65
Query: 140 PHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGF 199
P ++ ++ C E D++D+L + + L GD N + + SAA TC + F
Sbjct: 66 PKLKGRYETCSENYADAIDSLGQ---AKQFLTSGDYNS---LNIYASAAFDGAGTCEDSF 119
Query: 200 ED-LNGPVKDQVSD-KLKDLSELV 221
E N P + +D KL+DL ++V
Sbjct: 120 EGPPNIPTQLHQADLKLEDLCDIV 143
>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
Length = 239
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 122 HFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKRED 180
H ++A+Y S+L + P +R + D + + + A++R GS ++ G I K ED
Sbjct: 164 HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 270 PRWVSRETRRLLSLPVPHIQAD 291
PR + +ET+RLL+ PVP I+A+
Sbjct: 7 PRRIIKETQRLLAEPVPGIKAE 28
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 270 PRWVSRETRRLLSLPVPHIQAD 291
PR + +ET+RLL+ PVP I+A+
Sbjct: 8 PRRIIKETQRLLAEPVPGIKAE 29
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 270 PRWVSRETRRLLSLPVPHIQAD 291
PR + +ET+RLL+ PVP I+A+
Sbjct: 10 PRRIIKETQRLLAEPVPGIKAE 31
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 270 PRWVSRETRRLLSLPVPHIQAD 291
PR + +ET+RLL+ PVP I+A+
Sbjct: 5 PRRIIKETQRLLAEPVPGIKAE 26
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 270 PRWVSRETRRLLSLPVPHIQAD 291
PR + +ET+RLL+ PVP I+A+
Sbjct: 3 PRRIIKETQRLLAEPVPGIKAE 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,413,689
Number of Sequences: 62578
Number of extensions: 323091
Number of successful extensions: 760
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 11
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)