Query 017226
Match_columns 375
No_of_seqs 120 out of 1102
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.1E-49 2.3E-54 385.6 26.5 335 5-372 102-437 (437)
2 PTZ00206 amino acid transporte 100.0 9.4E-50 2E-54 395.4 22.3 345 3-370 116-465 (467)
3 KOG1304 Amino acid transporter 100.0 2E-49 4.3E-54 377.8 22.5 321 7-369 113-449 (449)
4 PF01490 Aa_trans: Transmembra 100.0 1.1E-45 2.5E-50 362.2 -4.9 339 4-366 64-408 (409)
5 PLN03074 auxin influx permease 100.0 2E-41 4.4E-46 334.8 22.6 319 9-375 121-457 (473)
6 KOG1305 Amino acid transporter 100.0 1.6E-38 3.6E-43 306.3 20.7 341 5-373 64-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 8.8E-39 1.9E-43 288.7 0.4 336 7-375 184-520 (524)
8 COG0814 SdaC Amino acid permea 99.9 8.3E-23 1.8E-27 199.5 22.2 332 8-365 72-411 (415)
9 TIGR00837 araaP aromatic amino 99.6 1E-13 2.2E-18 134.9 20.2 291 5-336 56-358 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.4 3.1E-11 6.6E-16 117.5 22.7 288 6-336 63-364 (394)
11 PRK15132 tyrosine transporter 99.4 7.6E-11 1.6E-15 114.5 22.5 312 5-360 62-390 (403)
12 PRK13629 threonine/serine tran 99.3 6.3E-10 1.4E-14 108.0 21.8 329 4-361 78-438 (443)
13 PRK10483 tryptophan permease; 99.3 1.3E-09 2.8E-14 105.8 23.3 290 5-336 70-372 (414)
14 TIGR00814 stp serine transport 99.2 3.8E-10 8.2E-15 109.8 16.8 321 4-354 62-395 (397)
15 PRK09664 tryptophan permease T 99.2 3.8E-09 8.3E-14 102.4 22.7 293 5-337 68-374 (415)
16 PRK11021 putative transporter; 98.4 0.00018 4E-09 70.7 25.1 57 141-200 175-231 (410)
17 PRK10655 potE putrescine trans 98.4 6.3E-05 1.4E-09 74.7 21.9 55 143-200 189-243 (438)
18 PRK10746 putative transport pr 98.4 5.1E-05 1.1E-09 75.8 20.6 181 142-335 199-386 (461)
19 PRK10644 arginine:agmatin anti 98.3 0.00012 2.6E-09 72.8 21.1 56 143-201 191-246 (445)
20 PRK10249 phenylalanine transpo 98.3 0.00023 5.1E-09 71.1 22.5 55 143-200 209-263 (458)
21 TIGR03810 arg_ornith_anti argi 98.3 0.00015 3.2E-09 72.7 21.1 183 10-206 69-254 (468)
22 COG1113 AnsP Gamma-aminobutyra 98.2 0.00013 2.7E-09 70.8 17.4 301 3-336 72-388 (462)
23 TIGR00913 2A0310 amino acid pe 98.2 0.00066 1.4E-08 68.2 23.6 175 9-200 69-251 (478)
24 PRK15049 L-asparagine permease 98.2 0.00047 1E-08 69.7 22.3 56 143-201 220-275 (499)
25 PRK11049 D-alanine/D-serine/gl 98.1 0.00078 1.7E-08 67.5 23.2 56 143-201 211-266 (469)
26 TIGR00909 2A0306 amino acid tr 98.1 0.0011 2.3E-08 65.7 23.6 177 11-202 70-251 (429)
27 PF13520 AA_permease_2: Amino 98.1 0.00016 3.4E-09 71.4 17.5 233 5-257 59-304 (426)
28 PRK10238 aromatic amino acid t 98.1 0.00055 1.2E-08 68.4 21.4 171 7-197 75-251 (456)
29 TIGR00905 2A0302 transporter, 98.1 0.00097 2.1E-08 66.9 23.0 178 10-202 75-254 (473)
30 PRK10580 proY putative proline 98.1 0.00057 1.2E-08 68.3 21.0 54 143-199 199-252 (457)
31 TIGR03813 put_Glu_GABA_T putat 98.1 0.00042 9.1E-09 69.6 20.0 49 151-202 202-250 (474)
32 TIGR00908 2A0305 ethanolamine 98.1 0.00055 1.2E-08 68.0 20.5 172 9-199 72-244 (442)
33 PRK10435 cadB lysine/cadaverin 98.1 0.00093 2E-08 66.3 21.9 60 142-204 186-245 (435)
34 PRK10197 gamma-aminobutyrate t 98.1 0.0013 2.9E-08 65.4 23.0 56 142-200 180-235 (446)
35 TIGR00930 2a30 K-Cl cotranspor 98.0 0.0024 5.3E-08 69.0 25.2 180 14-200 149-334 (953)
36 TIGR01773 GABAperm gamma-amino 98.0 0.0018 4E-08 64.5 23.0 177 7-202 75-257 (452)
37 PRK11357 frlA putative fructos 98.0 0.0012 2.6E-08 65.6 20.3 56 142-200 194-249 (445)
38 PRK11387 S-methylmethionine tr 97.9 0.0026 5.6E-08 63.8 22.1 55 143-200 206-260 (471)
39 TIGR00906 2A0303 cationic amin 97.9 0.0026 5.7E-08 65.1 21.8 178 15-200 100-285 (557)
40 TIGR00907 2A0304 amino acid pe 97.8 0.0079 1.7E-07 60.5 24.3 49 144-195 218-266 (482)
41 KOG1287 Amino acid transporter 97.8 0.0011 2.3E-08 65.3 16.5 290 15-338 85-387 (479)
42 TIGR00910 2A0307_GadC glutamat 97.8 0.0027 5.9E-08 64.3 19.2 50 146-198 197-246 (507)
43 TIGR00911 2A0308 L-type amino 97.5 0.0067 1.4E-07 61.4 18.6 57 142-201 234-290 (501)
44 COG0531 PotE Amino acid transp 97.5 0.01 2.2E-07 59.0 18.6 183 9-207 77-262 (466)
45 TIGR03428 ureacarb_perm permea 97.4 0.11 2.4E-06 52.1 25.8 53 144-199 214-266 (475)
46 PRK10836 lysine transporter; P 97.4 0.047 1E-06 55.0 22.9 54 144-200 206-259 (489)
47 TIGR00912 2A0309 spore germina 97.4 0.014 3.1E-07 56.2 18.3 177 6-209 62-241 (359)
48 PRK15238 inner membrane transp 97.2 0.052 1.1E-06 54.9 20.5 54 144-200 212-265 (496)
49 TIGR00800 ncs1 NCS1 nucleoside 96.8 0.043 9.3E-07 54.6 15.3 194 3-208 72-273 (442)
50 TIGR02358 thia_cytX probable h 96.8 0.16 3.4E-06 49.7 18.7 91 2-103 53-143 (386)
51 PF00324 AA_permease: Amino ac 96.7 0.0085 1.8E-07 60.2 9.3 64 142-208 199-262 (478)
52 COG3949 Uncharacterized membra 96.6 0.13 2.8E-06 48.2 15.6 81 2-98 60-142 (349)
53 PRK09442 panF sodium/panthothe 96.6 0.94 2E-05 45.6 23.4 87 3-103 103-190 (483)
54 PRK11375 allantoin permease; P 96.6 0.31 6.8E-06 49.1 19.7 49 7-55 88-137 (484)
55 COG1457 CodB Purine-cytosine p 96.3 0.18 3.8E-06 49.7 15.4 180 2-209 76-258 (442)
56 KOG1289 Amino acid transporter 96.3 0.2 4.4E-06 50.0 15.6 65 141-208 250-314 (550)
57 COG0591 PutP Na+/proline sympo 96.2 1.6 3.5E-05 44.1 22.3 86 2-101 99-185 (493)
58 TIGR02119 panF sodium/pantothe 96.1 1.7 3.7E-05 43.6 23.1 87 3-103 102-189 (471)
59 PF03845 Spore_permease: Spore 96.1 0.074 1.6E-06 50.4 11.7 179 4-209 58-237 (320)
60 PRK11017 codB cytosine permeas 95.3 0.87 1.9E-05 44.8 16.1 51 2-53 66-116 (404)
61 PRK12488 acetate permease; Pro 95.0 5 0.00011 41.1 24.3 86 4-103 126-212 (549)
62 TIGR00813 sss transporter, SSS 94.7 3.5 7.6E-05 40.4 18.5 86 4-103 62-148 (407)
63 PF00474 SSF: Sodium:solute sy 94.3 0.25 5.3E-06 48.5 9.2 87 4-104 65-153 (406)
64 KOG1286 Amino acid transporter 93.9 2.9 6.3E-05 42.8 16.1 175 142-334 231-420 (554)
65 PRK15419 proline:sodium sympor 93.5 9.4 0.0002 38.7 20.1 86 4-103 104-192 (502)
66 TIGR02121 Na_Pro_sym sodium/pr 92.2 14 0.00031 37.2 21.2 86 4-103 100-188 (487)
67 TIGR02711 symport_actP cation/ 91.7 17 0.00037 37.2 21.9 85 4-102 126-211 (549)
68 COG0833 LysP Amino acid transp 91.2 18 0.0004 36.5 19.1 53 141-196 232-284 (541)
69 PRK09395 actP acetate permease 81.4 68 0.0015 32.9 23.8 85 4-102 128-213 (551)
70 COG1914 MntH Mn2+ and Fe2+ tra 80.5 63 0.0014 31.9 21.0 46 8-53 77-122 (416)
71 PRK10484 putative transporter; 79.8 74 0.0016 32.4 21.3 94 4-103 97-193 (523)
72 TIGR00796 livcs branched-chain 79.8 3.2 6.9E-05 40.4 5.1 79 6-98 253-331 (378)
73 PF05525 Branch_AA_trans: Bran 76.4 6.3 0.00014 38.9 6.1 66 9-87 262-327 (427)
74 PF02133 Transp_cyt_pur: Perme 75.7 0.69 1.5E-05 45.9 -0.8 52 3-55 67-118 (440)
75 PF02554 CstA: Carbon starvati 73.0 12 0.00025 36.1 6.7 49 2-50 108-156 (376)
76 TIGR03648 Na_symport_lg probab 71.6 1.3E+02 0.0027 31.0 24.4 84 4-101 91-175 (552)
77 COG1114 BrnQ Branched-chain am 67.4 12 0.00026 36.6 5.5 65 10-87 265-329 (431)
78 KOG3832 Predicted amino acid t 66.2 8.1 0.00018 33.9 3.8 155 7-170 129-300 (319)
79 PRK15433 branched-chain amino 50.5 27 0.00058 34.7 4.9 64 11-88 268-331 (439)
80 PF01566 Nramp: Natural resist 46.8 2.7E+02 0.0058 26.6 17.7 78 8-99 42-121 (358)
81 PRK00701 manganese transport p 46.2 3.1E+02 0.0068 27.3 23.1 46 7-52 93-138 (439)
82 KOG4812 Golgi-associated prote 44.4 54 0.0012 29.5 5.3 69 291-364 160-243 (262)
83 TIGR00796 livcs branched-chain 41.6 3.4E+02 0.0074 26.4 15.1 24 306-333 323-346 (378)
84 KOG2082 K+/Cl- cotransporter K 35.8 1.5E+02 0.0033 31.6 7.6 65 148-215 415-488 (1075)
85 PF07954 DUF1689: Protein of u 32.7 1E+02 0.0022 25.8 5.0 56 312-372 33-94 (152)
86 PRK13183 psbN photosystem II r 27.8 69 0.0015 20.8 2.4 30 179-208 4-33 (46)
87 TIGR01197 nramp NRAMP (natural 26.6 6.1E+02 0.013 24.8 18.5 78 7-98 63-142 (390)
88 TIGR02230 ATPase_gene1 F0F1-AT 26.5 2.3E+02 0.0049 21.9 5.6 18 348-365 78-95 (100)
89 CHL00020 psbN photosystem II p 25.7 63 0.0014 20.7 2.0 27 182-208 4-30 (43)
90 COG5102 SFT2 Membrane protein 24.2 1.7E+02 0.0038 24.8 4.8 30 313-346 75-105 (201)
91 PF03134 TB2_DP1_HVA22: TB2/DP 23.9 2.6E+02 0.0056 20.9 5.6 37 312-348 2-40 (94)
92 PF01102 Glycophorin_A: Glycop 21.6 1.7E+02 0.0037 23.5 4.2 23 349-371 67-89 (122)
93 KOG1288 Amino acid transporter 20.8 1.4E+02 0.0031 31.4 4.5 34 164-200 315-348 (945)
94 PF01235 Na_Ala_symp: Sodium:a 20.6 3.9E+02 0.0083 26.5 7.3 83 16-111 301-383 (416)
95 PF05805 L6_membrane: L6 membr 20.4 2.3E+02 0.0049 24.8 5.1 63 309-371 45-117 (195)
96 PF02468 PsbN: Photosystem II 20.4 71 0.0015 20.5 1.4 25 183-207 5-29 (43)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=385.58 Aligned_cols=335 Identities=36% Similarity=0.594 Sum_probs=292.4
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 84 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp 84 (375)
+|..+|.|+++++||+++++++.+++.+.++|+|+.|++..+|++..+.+..+.+.. ..+.+.|+++++++++|
T Consensus 102 ~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~ 175 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLP 175 (437)
T ss_pred ccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHH
Confidence 455889999999999999999999999999999999999999999999998664321 23357899999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 164 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 164 (375)
++++||++.+++.|..|+++++.|..+.+++++.++...+..+....+ ..+... .++++|+++|||.+|..+||
T Consensus 176 ~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~---~~~~~~---~f~a~g~iaFaf~gH~v~pe 249 (437)
T KOG1303|consen 176 LSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD---LGTIPT---VFTALGIIAFAYGGHAVLPE 249 (437)
T ss_pred HHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc---CCCCcc---hhhhhhheeeeecCCeeeee
Confidence 999999999999999999999999888888888776543221111111 111111 18999999999999999999
Q ss_pred HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 017226 165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 244 (375)
Q Consensus 165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~ 244 (375)
||++||+| ++|+|++..++.+++++|+.+++.||++|||++++|++.|++ +|.|+.+.+|+++.+|++.+|+++
T Consensus 250 Iq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 250 IQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred hHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhh
Confidence 99999987 669999999999999999999999999999999999999996 589999999999999999999999
Q ss_pred ccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhh
Q 017226 245 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI 324 (375)
Q Consensus 245 ~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~f 324 (375)
.+|..+.+|+....+.++ +. ++..+.|.+.|+.+++.++++|+.+|+|+++++++||....++++
T Consensus 324 a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ 388 (437)
T KOG1303|consen 324 AQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF 388 (437)
T ss_pred hcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence 999999999988654321 11 123478999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 017226 325 YFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 372 (375)
Q Consensus 325 i~P~l~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~ii~~ 372 (375)
++|++||++++|++++.++|..++.+ .++|++.++.+..+++++++.+
T Consensus 389 ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 389 ILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999888 7999999999999999998864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=9.4e-50 Score=395.43 Aligned_cols=345 Identities=15% Similarity=0.109 Sum_probs=258.6
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
++++..||+|+++++||+++++++++++.++++|+|++|+++++|+++.+++..-. .+..+ ....++..+.+++.+++
T Consensus 116 ~~~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-~~~~~-~~~~~r~~~~~i~~~i~ 193 (467)
T PTZ00206 116 DKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNA-PDFLK-QKSGNRLLTSLMWLCFM 193 (467)
T ss_pred ccCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cchhh-hccCcEEeeeehhhhHh
Confidence 45678899999999999999999999999999999999999999999998863100 00000 00012223445566788
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc--cccccCchhHHHHHHHHHhhhHHhhcCCch
Q 017226 83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALGDIAFAYPYSL 160 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~h~ 160 (375)
+|++++|++++|+++|.+|+++.+...+++++.+...+...+..+.+. .+.++........+.+.++|+++|||.||.
T Consensus 194 lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~ 273 (467)
T PTZ00206 194 LPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQI 273 (467)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhh
Confidence 999999999999999999986443322222222222211110000000 000000111112357899999999999999
Q ss_pred hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHh
Q 017226 161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGG 240 (375)
Q Consensus 161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~s 240 (375)
+++|+++|||+| +.+||.+++..++.++.++|..+|++||++||+++++|+++|++. .++....++++++.++++.+
T Consensus 274 ~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~s 350 (467)
T PTZ00206 274 TAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVS 350 (467)
T ss_pred hhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHh
Confidence 999999999986 448999999999999999999999999999999999999999941 23556678889999999999
Q ss_pred hhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhh
Q 017226 241 YQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 320 (375)
Q Consensus 241 ypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~ 320 (375)
||++.+|+|+.+++.+..+ .+ +. ..|+|...+..+++++.++|+++|+++.+++++||++++
T Consensus 351 ypL~~~p~r~~i~~~~~~~--~~---------~~-------~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~ 412 (467)
T PTZ00206 351 YALLGMACRNALYDVIGWD--AR---------KV-------AFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG 412 (467)
T ss_pred hhhhhhhHHHHHHHHhCCC--cc---------cC-------chhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence 9999999999999876311 10 11 124565666677778899999999999999999999999
Q ss_pred hhhhhhhhHHHHHhc--Ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226 321 PLTIYFPVEMYFKQM--NIEA-WTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 370 (375)
Q Consensus 321 ~l~fi~P~l~~~~~~--~~~~-~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii 370 (375)
.++|++|++||++.. +.++ ...+|..+++++++|++++++|||+|+++.+
T Consensus 413 ~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 413 LLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 999999999999952 2222 2234566888999999999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-49 Score=377.84 Aligned_cols=321 Identities=21% Similarity=0.279 Sum_probs=268.4
Q ss_pred CCCHHHHHHHh----------hCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhH
Q 017226 7 SHNLKKEIINV----------SGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML 76 (375)
Q Consensus 7 ~~sY~~l~~~~----------~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i 76 (375)
..+|+|.++.+ +|+++|.++++++.++|+|.|++|+++++++++++.+. +.. .+++.+.|+.
T Consensus 113 ~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~-----~~~s~~~~i~ 184 (449)
T KOG1304|consen 113 SLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSP-----GVLSVRLYIL 184 (449)
T ss_pred cccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCC-----CCccHHHHHH
Confidence 46777777655 46778999999999999999999999999999999972 111 1467788888
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhc
Q 017226 77 IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAY 156 (375)
Q Consensus 77 i~~~v~lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 156 (375)
+..++++|++++||||+|+.+|++|+++.++-..++. +...++.+ +.++.+...++.+++.++|+.+|||
T Consensus 185 ~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~----~y~~~~~~------~~~~~~~~~~~~~~~lf~Gtaifaf 254 (449)
T KOG1304|consen 185 IQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIM----YYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAF 254 (449)
T ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHH----HHHHhccC------CccccccccchhhhHHHHHHHHHHh
Confidence 8889999999999999999999999996654333222 22222111 1222233334556899999999999
Q ss_pred CCchhHHHHHhhhCCCCCccchHH---HhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHH
Q 017226 157 PYSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFI 233 (375)
Q Consensus 157 ~~h~~~~~i~~~m~~p~p~~~~~~---~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~ 233 (375)
+|+.++.|++|+||+| ++|+ ++++.+|.+++++|..+|++||++|||++++.|+.|+| ++|+.+.+++++
T Consensus 255 EGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP---~~~l~~~Vkl~~ 327 (449)
T KOG1304|consen 255 EGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP---QEILSQTVKLLL 327 (449)
T ss_pred ccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC---ccHHHHHHHHHH
Confidence 9999999999999998 8898 99999999999999999999999999999999999998 489999999999
Q ss_pred HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHH
Q 017226 234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGV 313 (375)
Q Consensus 234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~l 313 (375)
++.++++||||++|..+.+|+.+.++..+ + +.++..+.+|+.+++++..+|..+|+++++++|
T Consensus 328 ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----~------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisL 390 (449)
T KOG1304|consen 328 AIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----N------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISL 390 (449)
T ss_pred HHHHHHcCchhhhhhHHHHHHhHHHhcCc-----c------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHH
Confidence 99999999999999999999988655311 1 234678899999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhHHHHHhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226 314 IGGVIFWPLTIYFPVEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 369 (375)
Q Consensus 314 vGs~~~~~l~fi~P~l~~~~~~~~~---~~~~~~~~~~~i~~~g~~~~v~gt~~si~~i 369 (375)
+||++++.+++++|+++++....++ ++..+++.|..++++|+++++.|||+|+.++
T Consensus 391 VGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 391 VGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999974222 3344567788999999999999999999764
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.1e-45 Score=362.21 Aligned_cols=339 Identities=22% Similarity=0.302 Sum_probs=266.7
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 83 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l 83 (375)
+++..+|+|++++++|+++++++++++.++++|.|++|+++++|+++++.+....+ ...++..|.++.+++++
T Consensus 64 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~ 136 (409)
T PF01490_consen 64 GTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVL 136 (409)
T ss_pred ccccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccc
Confidence 56899999999999999999999999999999999999999999999998753211 13456677888888899
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226 84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 163 (375)
Q Consensus 84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~ 163 (375)
|++++|+++++++.|.+|+++.+.++.+.+ .........++.+ .+.++..+..+.++++.++|+++|||.||.++|
T Consensus 137 pls~~~~l~~l~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~ 212 (409)
T PF01490_consen 137 PLSFLKNLKSLRYLSILGLFSIFYFIVIVV-IYIISYGPGEPSG---VPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLP 212 (409)
T ss_pred cccccchhhHHHHHhhhhhhccceeeeeec-ceeeeeecccccc---cccccccccchhhHHHHhhhhhhhhhhcccccc
Confidence 999999999999999999875433211111 1111211111111 111111123455789999999999999999999
Q ss_pred HHHhhhCCCCCcc-chHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhh
Q 017226 164 EIQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ 242 (375)
Q Consensus 164 ~i~~~m~~p~p~~-~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~syp 242 (375)
|+++|||+| ++ ++++++...++.+++++|..+|++||++||+++++|++.|++ .++++..++++++.++++.+||
T Consensus 213 ~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~p 288 (409)
T PF01490_consen 213 PIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYP 288 (409)
T ss_pred eeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhccc
Confidence 999999986 33 456699999999999999999999999999999999999998 3456888999999999999999
Q ss_pred ccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhh
Q 017226 243 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 322 (375)
Q Consensus 243 l~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l 322 (375)
++.+|.++.+|+.+.++.+.++ .+.+.+ .+.++.|..+|+.++..+.++|+.+|+++++++++||++++.+
T Consensus 289 l~~~p~~~~l~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i 359 (409)
T PF01490_consen 289 LQLFPARNSLENLLFKRAASSR-----DSPKNT----PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFI 359 (409)
T ss_pred cccchhHhhhhhheeccccccc-----cccccc----cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhH
Confidence 9999999999998753200000 000001 1234778999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhcCcchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 017226 323 TIYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI 366 (375)
Q Consensus 323 ~fi~P~l~~~~~~~~~~~~~~~-----~~~~~i~~~g~~~~v~gt~~si 366 (375)
+|++|+++|+|.++.++.+.+| ..++.++++|++.++.|+|+++
T Consensus 360 ~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 360 SFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999986554432222 2246677889999999999886
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2e-41 Score=334.81 Aligned_cols=319 Identities=17% Similarity=0.153 Sum_probs=253.0
Q ss_pred CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226 9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 88 (375)
Q Consensus 9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~ 88 (375)
+|.|+++..+|++++.+..++..++++|.|+.|++..++++..+-. .++.+.|+++++++++|++++
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i 187 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFI 187 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHc
Confidence 6899999999999999999999999999999999988877554410 245678899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHhh
Q 017226 89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 168 (375)
Q Consensus 89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 168 (375)
|++|+++++|.+|..+++.+...+++.++... +. +++++ +...+...++.++++++|||+||..+|||++|
T Consensus 188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~-~~-------~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG-QV-------EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-------CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 99999999999998765543222222222221 11 11111 11234556788888999999999999999999
Q ss_pred hCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCC--ccccccCCCCChHHHHHHHHHHHHHHHHhhhcccc
Q 017226 169 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 246 (375)
Q Consensus 169 m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~--~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~~ 246 (375)
|||| ++|+++...+...+..+|..+|+.||++|||++++ +.+.|+| ++...+++++++.++++.+||++++
T Consensus 259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~l~~~ 331 (473)
T PLN03074 259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFGFACT 331 (473)
T ss_pred ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 78999988999999999999999999999999864 5676776 3334678999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhhh
Q 017226 247 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYF 326 (375)
Q Consensus 247 p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi~ 326 (375)
|+.+..|+....+ + .+..+.|.++|+.+++.++++|+.+|+|+++++|+||++++.++|++
T Consensus 332 p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~ 392 (473)
T PLN03074 332 PLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII 392 (473)
T ss_pred hHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 9999998865321 0 12236789999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCc-----------ch--hhHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q 017226 327 PVEMYFKQMNI-----------EA--WTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGIISAKLS 375 (375)
Q Consensus 327 P~l~~~~~~~~-----------~~--~~~~--~~~~~~i~~~-g~~~~v~gt~~si~~ii~~~~~ 375 (375)
|+++|++.+++ ++ ++.+ .+.|+.++++ |+++.+.|+|+|++++++++++
T Consensus 393 P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 393 PSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 99999985321 11 1112 2568877765 6666799999999999999863
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=306.26 Aligned_cols=341 Identities=16% Similarity=0.234 Sum_probs=262.3
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCch-hhHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAVQL 83 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~v~l 83 (375)
.+..+|++++++++|+.++...++.+.+++.| |++|+++++|.++..........+.... ...++. |++....+++
T Consensus 64 ~~~~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~ 140 (411)
T KOG1305|consen 64 SGERTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIIL 140 (411)
T ss_pred cCCCCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHH
Confidence 34459999999999999988888888888888 8999999999999776543211111000 122333 4666678889
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226 84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 163 (375)
Q Consensus 84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~ 163 (375)
|+++.|++++|+++|.++.+..+.++.++ ++++...+...++.. ++.+.....++.+.++|+++|||.||+|+.
T Consensus 141 pLsl~k~l~~Lk~tS~~s~~~~~~fv~~v----v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~ 214 (411)
T KOG1305|consen 141 PLSLLKNLDSLKYTSALSLASVVYFVVLV----VYKYFQGPCALGRLS--YLVPNLSSFSSLFYALPIFVFAFTCHSNVF 214 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhcccccCCcc--cccCCcchhhhhhhhhhhhheeeeccccce
Confidence 99999999999999999987554433322 233332221011100 111222233678999999999999999999
Q ss_pred HHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCCh----HHHHHHHHHHHHHHHH
Q 017226 164 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPY----WLIDLANAFIVIHLVG 239 (375)
Q Consensus 164 ~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~----~l~~~~~~~~~i~l~~ 239 (375)
++++|||+| +++++.++.+.+...+.++|..+|.+||++|||++.+|++.|+|+..+. +....++..+.++++.
T Consensus 215 ~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l 292 (411)
T KOG1305|consen 215 PIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLL 292 (411)
T ss_pred eeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHH
Confidence 999999986 8899999999999999999999999999999999999999999842222 1357899999999999
Q ss_pred hhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhh
Q 017226 240 GYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIF 319 (375)
Q Consensus 240 sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~ 319 (375)
++|+..+|+|..+++.+.+..|++ + ...+.++.+++..++..+.+.|+.+|+++++++++||+++
T Consensus 293 ~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~ 357 (411)
T KOG1305|consen 293 TFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSS 357 (411)
T ss_pred HHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhh
Confidence 999999999999988775443321 0 0123556778899999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017226 320 WPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 373 (375)
Q Consensus 320 ~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~ 373 (375)
+.++||+|+++|++..|.+.+++ ...+...++|+..++.|+..-+.++..+.
T Consensus 358 ~~i~FI~P~~~yl~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 358 TSISFILPALYYLKASKKKSREP--LGALIFLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred hhhHHHHHHHhhheeeccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999865433333 33455678899999999999999988764
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-39 Score=288.72 Aligned_cols=336 Identities=17% Similarity=0.156 Sum_probs=271.8
Q ss_pred CCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 017226 7 SHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl 85 (375)
..||.+++..+++++ |.+.+.+.+.+.++.+|+.|++..+|.+..-++. + ..+++.|+++.+..++|.
T Consensus 184 RdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~------~-----svd~~sWm~i~~a~LLpc 252 (524)
T KOG4303|consen 184 RDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG------L-----SVDKASWMMITSASLLPC 252 (524)
T ss_pred ehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC------C-----CccccchhhhhhHHHhhh
Confidence 579999999999987 5699999999999999999999999987776542 1 245677999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226 86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 165 (375)
Q Consensus 86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i 165 (375)
+++||||..+.+|++.+.+-++.-.+++.+|..+. +| .++...+...+..+++.++|+++|+|..|..+|++
T Consensus 253 ~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-----~d---W~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~L 324 (524)
T KOG4303|consen 253 SFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV-----SD---WSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNL 324 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---ccceeEEEEEEcccCceEEEEEEEeeeceeecccc
Confidence 99999999999999988766665555555554331 12 22222223344456888999999999999999999
Q ss_pred HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhccc
Q 017226 166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 245 (375)
Q Consensus 166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~ 245 (375)
+..|++| .+|.-.+.++-+..+++-..+|..||++||++++..|++|+| +.....++|+++++.-++|||+-+
T Consensus 325 EGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPf 397 (524)
T KOG4303|consen 325 EGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPF 397 (524)
T ss_pred ccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchH
Confidence 9999987 788889999999999999999999999999999999999997 556678899999999999999988
Q ss_pred cchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhh
Q 017226 246 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIY 325 (375)
Q Consensus 246 ~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi 325 (375)
+.+.+.+|+-+....|+..|.+ -|+. +.+.+.+.+.+|..+++++.+.|+.+|++..+++++|+++++.++|+
T Consensus 398 yAAvelLe~nlF~g~p~t~Fps-cys~------Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFi 470 (524)
T KOG4303|consen 398 YAAVELLENNLFLGYPQTPFPS-CYSP------DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFI 470 (524)
T ss_pred HHHHHHHHHhhhcCCCCCCCce-eeCC------CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHH
Confidence 8888888887665545444321 1111 11112234568999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017226 326 FPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 375 (375)
Q Consensus 326 ~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~~~ 375 (375)
.|++||++++...........+..++++|...++.|.|.|-.++++.+++
T Consensus 471 wP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 471 WPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 99999999853332222334567788999999999999999999998764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.91 E-value=8.3e-23 Score=199.50 Aligned_cols=332 Identities=15% Similarity=0.163 Sum_probs=224.6
Q ss_pred CCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhc
Q 017226 8 HNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ 87 (375)
Q Consensus 8 ~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~ 87 (375)
.+|.+++++.+|++++++.++...+.++|.+.+|.+..+|.+++.++.... .+ ..+++.+.+++..++.++++
T Consensus 72 ~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-----~~--~~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 72 ASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-----LN--PLPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-----cC--CcchHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999985321 11 14466667778888888999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226 88 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 167 (375)
Q Consensus 88 ~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 167 (375)
.++...++..|.++....+..++ ++.+.....+. ......|... +....+...++|+..|||+||+++|++++
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~----l~~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~ 217 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVL----LVVYLIPHWNP--ANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVN 217 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHH----HHHHHhcccCH--HHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHH
Confidence 99999999999988774433222 11222111010 0111111111 23445588999999999999999999999
Q ss_pred hhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccccCCCCChHHHHHHHHHHHHHHHHhhhccccc
Q 017226 168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 247 (375)
Q Consensus 168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~~~~~~i~l~~sypl~~~p 247 (375)
||+++ ++++.+|+...+..+..++|..+++++|..+|+++.+|++++.+ +++.+. .+......+...++|.+.+|
T Consensus 218 ~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~f~ 292 (415)
T COG0814 218 YMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLL-SALAGVINSPILSIALNIFA 292 (415)
T ss_pred Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHH-HHHHHhhcchHHHHHHHHHH
Confidence 99975 43459999999999999999999999999999999999999986 333322 22233333334555555555
Q ss_pred hHHHHHHHHHhh---CC--CCCCC-ccccccCCCCCCcCCCcchh--hhHHHHHHHHHHHHHHhccChHHHHHHHhhhhh
Q 017226 248 IFAHFEKWICEK---FP--ENGFL-NNEFFLKPPLMPAFRWNPLR--LCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIF 319 (375)
Q Consensus 248 ~~~~ie~~~~~~---~p--~~~~~-~~~~~~~~~~~~~~~~~~~r--~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~ 319 (375)
++...-..++.- ++ ++..+ +++...| +..+.+ .......++.....+...|..+.+++.+|+...
T Consensus 293 ~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r-------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~ 365 (415)
T COG0814 293 LFAIATSFLGVYLGLFEGLADLFKKSNSKPGR-------KKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPII 365 (415)
T ss_pred HHHHHHHHhCchhhHHHhhhHHHHhccCcccc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 553322211100 00 00000 0000000 111222 223444567777788899999999999999999
Q ss_pred hhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017226 320 WPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 365 (375)
Q Consensus 320 ~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~s 365 (375)
+.+.|+.|...+.|....+.++.++..+..++++|+..+..-.++.
T Consensus 366 ~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 366 PALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874322222212345666777877766655543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.59 E-value=1e-13 Score=134.95 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=191.7
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 84 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp 84 (375)
++..+|.+.+++++||++++++.+.....+++.+.+|.+..++.+..+++.... . ..+.+.+.+++.+++.+
T Consensus 56 p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~~ 127 (381)
T TIGR00837 56 PGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFGS 127 (381)
T ss_pred CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999998864211 0 12222233333334444
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 164 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 164 (375)
+. .+..|..++++.+.+...+....+.++..+.+ .+ + + ...+.. .+.....+...+++...++|++|.++++
T Consensus 128 l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~-~~-~--~-~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~ 199 (381)
T TIGR00837 128 FV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPH-VK-G--D-LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVPS 199 (381)
T ss_pred HH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-H--H-HHhcCc--cccccHHHHHHHHHHHHHHHHcccccHH
Confidence 44 45668888888776654433222222222211 11 0 0 011100 0011233577889999999999999999
Q ss_pred HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc-C------Cc---cccccCC-CCChHHHHHHHHHH
Q 017226 165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-P------GN---LLTGFGF-YEPYWLIDLANAFI 233 (375)
Q Consensus 165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-~------~~---il~n~~~-~~~~~l~~~~~~~~ 233 (375)
+.+|+++| +|+.+|++..+..++.++|+.+........+.+. + +| ....+.. ....+...++.++-
T Consensus 200 ~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~ 276 (381)
T TIGR00837 200 LYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFS 276 (381)
T ss_pred HHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999853 4899999999999999999987655554443221 1 11 1111110 01234455677778
Q ss_pred HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChH-HHHH
Q 017226 234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVLG 312 (375)
Q Consensus 234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~-~v~~ 312 (375)
.+.+..|+.-.....+|..++.+++. + + + ..|.....+..+...++|.+.|+.. ..++
T Consensus 277 ~~al~tS~~g~~l~~~d~l~~~~~~~--~------------~----~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~ 335 (381)
T TIGR00837 277 NFALASSFLGVTLGLFDYLADLFKFD--D------------S----K---KGRFKTGLLTFLPPLVFALFYPEGFLYAIG 335 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--c------------c----c---CCCchhhhhhHHhHHHHHHHhhHHHHHHHH
Confidence 88888888877777888877665321 0 0 0 1133344455577778899999866 8999
Q ss_pred HHhhhhhhhhhhhhhhHHHHHhcC
Q 017226 313 VIGGVIFWPLTIYFPVEMYFKQMN 336 (375)
Q Consensus 313 lvGs~~~~~l~fi~P~l~~~~~~~ 336 (375)
..| +.++.+.+++|++++.+.+|
T Consensus 336 ~~G-~~~~~~~~~~p~l~~~~~r~ 358 (381)
T TIGR00837 336 YAG-LAATIWAVIIPALLAWKARK 358 (381)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999 88999999999999998754
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.43 E-value=3.1e-11 Score=117.52 Aligned_cols=288 Identities=16% Similarity=0.181 Sum_probs=177.0
Q ss_pred CCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 017226 6 PSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85 (375)
Q Consensus 6 ~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl 85 (375)
+..+|.+++++.+|++++++..+......++.+++|..-.++.+++.++... +. +.+++.-.+++.++.-.+
T Consensus 63 ~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~----~~----~~~~~~~~~~f~~i~~~i 134 (394)
T PF03222_consen 63 EGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL----GT----DLSPWLSSLLFTIIFGGI 134 (394)
T ss_pred CCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc----CC----CCcHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999997521 11 223333233333332222
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226 86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 165 (375)
Q Consensus 86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i 165 (375)
... .-|...+.+.+-+...+.. ++.+........+.+ .+.+. .+...++...+.++|+..+||+.|+.+|++
T Consensus 135 v~~-g~~~v~~~n~~lv~~~i~~-~~~l~~~~~p~~~~~----~L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl 206 (394)
T PF03222_consen 135 VYF-GTKAVDRINRVLVFGMIIS-FIILVVYLIPHWNPS----NLLDA--PPSPSDWSYILPALPVLVFSFGFHNIVPSL 206 (394)
T ss_pred HHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCHH----Hhhcc--ccccccHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222 2223334433222211111 111111111111100 01110 011234445778999999999999999999
Q ss_pred HhhhCCCCCccchHHHhhHHHHHHHHHHHhhh--hccccc---------cccCccCC--ccccccCCCCChHHHHHHHHH
Q 017226 166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPG--NLLTGFGFYEPYWLIDLANAF 232 (375)
Q Consensus 166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~v--g~~GY~---------~fG~~v~~--~il~n~~~~~~~~l~~~~~~~ 232 (375)
.+.+++ +.+|.+|++..+..+..++|++. .+.|-+ .-++++.+ ..+.+.. ++.+....++++
T Consensus 207 ~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~f 281 (394)
T PF03222_consen 207 VKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIF 281 (394)
T ss_pred HHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHH
Confidence 999985 34788999988888888887654 233311 11111111 1112221 223445567777
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHH
Q 017226 233 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVL 311 (375)
Q Consensus 233 ~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~ 311 (375)
-.+.+.+||-=...-.+|.+++.++. +++ ...|...-........++|...|+ +-..+
T Consensus 282 a~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al 340 (394)
T PF03222_consen 282 AFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIAL 340 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHH
Confidence 78888888855555677777766532 110 122333333445667788999987 88999
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHhcC
Q 017226 312 GVIGGVIFWPLTIYFPVEMYFKQMN 336 (375)
Q Consensus 312 ~lvGs~~~~~l~fi~P~l~~~~~~~ 336 (375)
++.| ...+.+..++|+++..|.++
T Consensus 341 ~~aG-~~~~il~~ilP~~m~~~~r~ 364 (394)
T PF03222_consen 341 GYAG-IGIAILLGILPALMVWKARK 364 (394)
T ss_pred Hhhc-HHHHHHHHHHHHHHHHHHHc
Confidence 9999 99999999999999999754
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.39 E-value=7.6e-11 Score=114.53 Aligned_cols=312 Identities=12% Similarity=0.096 Sum_probs=189.3
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 84 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp 84 (375)
++..++.+++++.+|++|+++..+......+..+.+|..-.++.+.+.++.+..+ +.+...+.+.+.++.-.
T Consensus 62 ~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~ 133 (403)
T PRK15132 62 PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGG 133 (403)
T ss_pred CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999888753211 12233344444444333
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 164 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 164 (375)
..+. ..|...+.+.+=+...+.. ++..........+. ..+.+. +...+ -...++|++.+||+.|+++|+
T Consensus 134 iv~~-g~~~v~~~n~~L~~~~ii~-~~~~~~~l~p~~~~----~~L~~~---~~~~~--~~~~~iPvl~~SFgfh~iIps 202 (403)
T PRK15132 134 VVCV-GTSSVDLFNRFLFSAKIIF-LVVMLALMMPHIHK----VNLLTL---PLQQG--LALSAIPVIFTSFGFHGSVPS 202 (403)
T ss_pred HHhc-cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCH----HHHhcC---Ccccc--HHHHHHHHHHHHhhCCcccHH
Confidence 3333 2244444443222111111 11111111111100 001100 00011 267899999999999999999
Q ss_pred HHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc-----cCC-----ccccccCCC-CChHHHHHHHHHH
Q 017226 165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-----TPG-----NLLTGFGFY-EPYWLIDLANAFI 233 (375)
Q Consensus 165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~-----v~~-----~il~n~~~~-~~~~l~~~~~~~~ 233 (375)
+.+.+++ +.+|.+|++..+..+..++|+.-=......-+.+ .++ +++..+... ...+...++.++-
T Consensus 203 l~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa 279 (403)
T PRK15132 203 IVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFA 279 (403)
T ss_pred HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHH
Confidence 9999975 3478899998888888887764433333222221 111 223333211 1235556677777
Q ss_pred HHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHHH
Q 017226 234 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLG 312 (375)
Q Consensus 234 ~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~~ 312 (375)
.+.+..||-=...-.+|.+++.+..+ + + ...|...-.+..+..+++|+..|+ +....+
T Consensus 280 ~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~al~ 338 (403)
T PRK15132 280 DLALATSFLGVALGLFDYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMALG 338 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHH
Confidence 77888887555556677777665321 1 0 012444445567888899999997 788899
Q ss_pred HHhhhhhhhhhhhhhhHHHHHhcCcc---hhh--HHHHHHHHHHHHHHHHHHH
Q 017226 313 VIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTF 360 (375)
Q Consensus 313 lvGs~~~~~l~fi~P~l~~~~~~~~~---~~~--~~~~~~~~i~~~g~~~~v~ 360 (375)
+.|. ..+.+.+++|+++-.|.+|.+ +++ .....+++.+++|++..+.
T Consensus 339 ~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 339 YAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 9885 578999999999999976433 222 0233455566666655543
No 12
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.29 E-value=6.3e-10 Score=108.03 Aligned_cols=329 Identities=12% Similarity=0.085 Sum_probs=193.0
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 83 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l 83 (375)
+++..+|.+++++.||++++.+..+......+-.+.+|...+.+.++..+.++. + . + +.+++...+++.+++.
T Consensus 78 ~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~---~-~--~~~r~l~slifv~~l~ 150 (443)
T PRK13629 78 SNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQL-G---F-A--PLNRGFVALFLLLLMA 150 (443)
T ss_pred CCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C---c-C--CccHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999888888877654321 1 0 0 1233333333444443
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccc-ccccc-----ccCchhHHHHHHHHHhhhHHhhcC
Q 017226 84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG-SFSGV-----STTTSIEKMWLVAQALGDIAFAYP 157 (375)
Q Consensus 84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~faf~ 157 (375)
...+..+ |..-+++.+=+. ..+..+ +.++++-. |+.+. .+.+. ++............++|++.+||+
T Consensus 151 ~iv~~G~-~~v~kv~~~Lv~-~~i~~l--~~l~~~Li---P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~ 223 (443)
T PRK13629 151 FVIWFGK-DLMVKVMSYLVW-PFIASL--VLISLSLI---PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFN 223 (443)
T ss_pred HHHHhhH-HHHHHHHHHHHH-HHHHHH--HHHHHHHH---HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHh
Confidence 4444332 444444432111 111111 11111111 11000 01100 000011111246789999999999
Q ss_pred CchhHHHHHhhhCCC-----CCc--cchHHHhhHHHHHHHHHHHhhhhccccccccCcc-----CCcc--ccc----cCC
Q 017226 158 YSLILIEIQDTLKSP-----PPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGNL--LTG----FGF 219 (375)
Q Consensus 158 ~h~~~~~i~~~m~~p-----~p~--~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-----~~~i--l~n----~~~ 219 (375)
-|+.+|+....+|+. .++ .+|-+|++..+..+..++|+..-+..-..-+.+- ++|+ +.. ++.
T Consensus 224 f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~ 303 (443)
T PRK13629 224 FSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFAS 303 (443)
T ss_pred ccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhh
Confidence 999999987774321 012 4778888888888887777665555444444321 1222 222 220
Q ss_pred CCC------hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHh-h-CCCCCCCccccccCCCCCCcCCCcchhhhHHH
Q 017226 220 YEP------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRT 291 (375)
Q Consensus 220 ~~~------~~l~~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~ 291 (375)
... .++..+..+.-.+.+..||-=...-++|.++..+.+ . .++++ +. +.+..+.....
T Consensus 304 ~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~~------~~~~~~~~~~~ 369 (443)
T PRK13629 304 MTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------KV------SLGKLNTISMI 369 (443)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc------CHHHHHHHHHH
Confidence 000 223445555555677777755555778888887732 1 11110 11 11234555666
Q ss_pred HHHHHHHHHHHhccChHHHHHHHhhhhhhhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 017226 292 VYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG 361 (375)
Q Consensus 292 ~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~g 361 (375)
.+++.++.+|+.=|++-++++-+|+-....+.|++|...-.|....++++.+ ..|+++++.|++....-
T Consensus 370 ~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~~i~~~ 438 (443)
T PRK13629 370 FIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLLTILNI 438 (443)
T ss_pred HHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHHHHHHH
Confidence 7778889999999999999998888888899999999888887544444332 35777777776654433
No 13
>PRK10483 tryptophan permease; Provisional
Probab=99.28 E-value=1.3e-09 Score=105.77 Aligned_cols=290 Identities=11% Similarity=0.031 Sum_probs=178.5
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 84 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp 84 (375)
++..++.+++++.+|++|+.+..++.....++.+++|+--.++.+++.++.. . . +.+++.-.++++++.-.
T Consensus 70 ~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~---~----~i~~~~~~llF~~~~~~ 140 (414)
T PRK10483 70 RIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--S---L----NVPARAAGFGFALLVAF 140 (414)
T ss_pred CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--C---C----CCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999998641 1 0 12333333445554444
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 164 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 164 (375)
+.+.. .|...+.+.+=....+.. ++.+........+.+ .+.+.++ .....+.....++|++.+||+.|+++|+
T Consensus 141 iv~~g-t~~vd~~n~~l~~~~i~~-f~~~~~~l~~~i~~~----~L~~~~~-~~~~~~~~~~~alPvl~~SFgfh~iIPs 213 (414)
T PRK10483 141 VVWLS-TKAVSRMTAIVLGAKVIT-FFLTFGSLLGHVQPA----TLFNVAE-SNASYAPYLLMTLPFCLASFGYHGNVPS 213 (414)
T ss_pred HHHhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCHH----HHhcccc-ccchhHHHHHHHHHHHHhhccCCCcchH
Confidence 44432 355555553222111111 111111111111100 0111000 1112223467899999999999999999
Q ss_pred HHhhhCCCCCccchHHHhhHHHHHHHHHHHhh--hhcccccc---------ccCccCCccccccCCC-CChHHHHHHHHH
Q 017226 165 IQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPGNLLTGFGFY-EPYWLIDLANAF 232 (375)
Q Consensus 165 i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~--vg~~GY~~---------fG~~v~~~il~n~~~~-~~~~l~~~~~~~ 232 (375)
+++.+++ +.+|.+|++..+..+..++|+. ..+.|-.. -|+++ +..+..+... ++.++..+..++
T Consensus 214 l~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~F 289 (414)
T PRK10483 214 LMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVF 289 (414)
T ss_pred HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHH
Confidence 9999875 2368899999998888888876 23333222 12222 1111222110 122444566777
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHHH
Q 017226 233 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVL 311 (375)
Q Consensus 233 ~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v~ 311 (375)
-.+.+..||-=...-.+|.+++.++.+ ++ ...|...-.+..+-..++|...|+ |-..+
T Consensus 290 a~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL 348 (414)
T PRK10483 290 SNFAVASSFLGVTLGLFDYLADLFGFD--DS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAI 348 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhHHHHHHHhHHHHHHHH
Confidence 777888887555556777777765321 10 012332333456788889999998 88899
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHhcC
Q 017226 312 GVIGGVIFWPLTIYFPVEMYFKQMN 336 (375)
Q Consensus 312 ~lvGs~~~~~l~fi~P~l~~~~~~~ 336 (375)
+..|.. .+.+.-++|+++-.+.||
T Consensus 349 ~yAG~~-~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 349 GYAGLA-ATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 999966 677888999999999764
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.23 E-value=3.8e-10 Score=109.79 Aligned_cols=321 Identities=8% Similarity=0.023 Sum_probs=192.4
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 83 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l 83 (375)
+.+..++.|++++.|||+++.+..+......+..+.+|....++.+.+.+.... + .+ .+.+....+..+.++
T Consensus 62 ~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~---~~----~p~~~i~~lilv~il 133 (397)
T TIGR00814 62 KNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-G---TA----PPLRGLLSLALILIL 133 (397)
T ss_pred CCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CC----CcHHHHHHHHHHHHH
Confidence 334789999999999999999999999999999999999999999888886521 1 11 112212222122222
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHH
Q 017226 84 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 163 (375)
Q Consensus 84 pl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~ 163 (375)
-.......+.+.+++.+-....++..++.....+ ...+.+ .+...| .......+...+++...+||.+|+.++
T Consensus 134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~li-p~~~~~----~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIs 206 (397)
T TIGR00814 134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLI-PHWNGA----NLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIIS 206 (397)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHH----HHhcCC--cccchHHHHHHHHHHHHHHHHccccch
Confidence 2333345666666665443222111111111111 111100 011111 011233458899999999999999999
Q ss_pred HHHhh----hCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc-----CCc--cccccCCC-CChHHHHHHHH
Q 017226 164 EIQDT----LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGN--LLTGFGFY-EPYWLIDLANA 231 (375)
Q Consensus 164 ~i~~~----m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v-----~~~--il~n~~~~-~~~~l~~~~~~ 231 (375)
+...+ .++|+...+|.+|++..+..+..++|+..-+..-...+.+. ++| ++..+..+ +..+...+..+
T Consensus 207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~ 286 (397)
T TIGR00814 207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPI 286 (397)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHH
Confidence 98633 33221124777888888888888877766665555555332 122 12111100 12234445555
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHH
Q 017226 232 FIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 310 (375)
Q Consensus 232 ~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v 310 (375)
.-.+.+..||-=...-++|.+++.+.+. .++++ +. +.+..+.......++.++.+|+.=|++-++
T Consensus 287 f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~--------~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~ 352 (397)
T TIGR00814 287 VAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK--------KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSF 352 (397)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 5566777777666678888888877321 11110 00 112334455566678888899999999999
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHhcCcchhhHHHHHHHHHHHHH
Q 017226 311 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC 354 (375)
Q Consensus 311 ~~lvGs~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~i~~~g 354 (375)
++-+|+--...+.|++|...-.|....++++.++ .|+++++.|
T Consensus 353 i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~~-~~~fv~~~g 395 (397)
T TIGR00814 353 IEALGGPIIAMILFLMPMYAIYKVPALKKYRGRI-SNVFVTVIG 395 (397)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCCc-chheeEeee
Confidence 9988888888999999998888875444443323 355555544
No 15
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.21 E-value=3.8e-09 Score=102.38 Aligned_cols=293 Identities=11% Similarity=0.049 Sum_probs=176.1
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 84 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lp 84 (375)
++..++.+++++.+|++|+.+..+......++.+++|+--.++.+.+.++... +. +.+++.-.++++++.-+
T Consensus 68 ~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~----~i~~~~~~llF~~~~~~ 139 (415)
T PRK09664 68 PVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL----GY----HANPRIVGICTAIFVAS 139 (415)
T ss_pred CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cC----CCcHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999986411 10 12333333455555545
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHH-HHHHHHHhhhHHhhcCCchhHH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEK-MWLVAQALGDIAFAYPYSLILI 163 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~h~~~~ 163 (375)
..+... |...+.+.+=....+.. ++..........+.. .+.+.+....... ......++|++.+||+.|+++|
T Consensus 140 ~v~~gt-~~vd~~nr~l~~~~ii~-f~~~~~~l~~~i~~~----~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIP 213 (415)
T PRK09664 140 VLWISS-LAASRITSLFLGLKIIS-FVIVFGSFFFQVDYS----ILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIP 213 (415)
T ss_pred HHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHhhcccHH----HHhcCccccccchHHHHHHHHHHHHHHhhhCCCcch
Confidence 555433 55555443221111111 111111111111100 0111110010111 2236779999999999999999
Q ss_pred HHHhhhCCCCCccchHHHhhHHHHHHHHHHHhh--hhcccccc---------ccCccCCccccccC-CCCChHHHHHHHH
Q 017226 164 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLF--CGGFGYAA---------FGDNTPGNLLTGFG-FYEPYWLIDLANA 231 (375)
Q Consensus 164 ~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~--vg~~GY~~---------fG~~v~~~il~n~~-~~~~~~l~~~~~~ 231 (375)
++.+.+++ +.++.+|++..+..+..++|.+ .++.|-+. -|++++.-+ ..+. .....++..+.++
T Consensus 214 sl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~-~s~~~~~~~~~i~~~~~~ 289 (415)
T PRK09664 214 SLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV-KSFLGTKQHGIIEFCLLV 289 (415)
T ss_pred HHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH-HHHHhhccChHHHHHHHH
Confidence 99999875 2367777777776666667732 23333221 222222211 1111 0023355567777
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHhhCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccC-hHHH
Q 017226 232 FIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQV 310 (375)
Q Consensus 232 ~~~i~l~~sypl~~~p~~~~ie~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~-~~~v 310 (375)
+-.+.+..||-=...-.+|.+.+.++.+ ++ ...|...-.+..+--.+.|+..|+ |-..
T Consensus 290 Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~A 348 (415)
T PRK09664 290 FSNLAVASSFFGVTLGLFDYLADLFKID--NS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIYG 348 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-------------------cccceeeehhhHhhhHHHHHHhhHHHHHH
Confidence 7777888888555556677777665321 10 012332333456778889999998 8889
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHhcCc
Q 017226 311 LGVIGGVIFWPLTIYFPVEMYFKQMNI 337 (375)
Q Consensus 311 ~~lvGs~~~~~l~fi~P~l~~~~~~~~ 337 (375)
++..|.. .+.+.-++|+++-.|.||.
T Consensus 349 L~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 349 IGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 9999985 6688889999999998653
No 16
>PRK11021 putative transporter; Provisional
Probab=98.40 E-value=0.00018 Score=70.74 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
++.++..++....|+|.|-......-+|+|||+ |+.||++..+...+.++|..+...
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344678889999999999999999999999972 789999999999999999887654
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=98.40 E-value=6.3e-05 Score=74.68 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
.++..++....|+|.|-......-+|+|||+ |+.+|++..+...+.++|..+...
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~ 243 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNV 243 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999982 789999999999999999876544
No 18
>PRK10746 putative transport protein YifK; Provisional
Probab=98.37 E-value=5.1e-05 Score=75.84 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=93.4
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc-cC---Ccccccc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-TP---GNLLTGF 217 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~-v~---~~il~n~ 217 (375)
+.++..++....|+|.|--.+...-.|+||| +|+.||++..++....++|....+.--.....+ .. ++...-+
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~ 275 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF 275 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence 4457788999999999999999999999998 388999998888888888876543333332221 11 0110001
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHH
Q 017226 218 GFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVS 296 (375)
Q Consensus 218 ~~~~~~~l~~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~ 296 (375)
.+....+...+.++...++.+.+.--.++-..+.+...-.++ .|+. + .+.++.+.| +.-+.+.....++
T Consensus 276 ~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~-~-~~~~~~g~P--------~~al~~~~~~~~l 345 (461)
T PRK10746 276 AKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAA-M-AKVSRHGVP--------VAGVAVSILILLV 345 (461)
T ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH-H-HHhCCCCCc--------HHHHHHHHHHHHH
Confidence 000111222344455555555444323333344443332211 1110 0 000011112 1112222222233
Q ss_pred HHHHHHhccChHHHHHHHhhhhh--hhhhhhhhhHHHHHhc
Q 017226 297 VTAIAMSFPYFNQVLGVIGGVIF--WPLTIYFPVEMYFKQM 335 (375)
Q Consensus 297 ~~~iA~~vp~~~~v~~lvGs~~~--~~l~fi~P~l~~~~~~ 335 (375)
........|+-+.+++.+-++++ ..+.++++++.++|.+
T Consensus 346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456766666665554433 3688888888888864
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.29 E-value=0.00012 Score=72.80 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 201 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G 201 (375)
..+..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|..+.+.-
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 191 GAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888999999999999999999998 27899999999999999998877653
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=98.26 E-value=0.00023 Score=71.07 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=46.6
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
.++..++....|+|.|-......-+|+||| +|+.||++..++....++|......
T Consensus 209 ~~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 209 NGLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999997 3789999999998888888764433
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.26 E-value=0.00015 Score=72.68 Aligned_cols=183 Identities=8% Similarity=-0.002 Sum_probs=94.6
Q ss_pred HHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHHhhcC
Q 017226 10 LKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLILSQA 88 (375)
Q Consensus 10 Y~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lpl~~~ 88 (375)
.-+-++++||+...+.+.+.......-...+|.....+.+...++.. . + ..+...+.+... +..+-..-.
T Consensus 69 ~y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~-~------~~~~~~~~~~~~~~~~~~~ln~ 139 (468)
T TIGR03810 69 VYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF--G-G------GNNPPSIIGASVLLWCVHFLVL 139 (468)
T ss_pred hhhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c-C------CCcHHHHHHHHHHHHHHHHHHH
Confidence 33448889999888888877766554445555555544444443321 0 0 000111121111 111222233
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCccccccc-cccc-CchhHHHHHHHHHhhhHHhhcCCchhHHHHH
Q 017226 89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVST-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 166 (375)
Q Consensus 89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 166 (375)
+..|..+.++.+.++.-+.-.++.++.++.. .+.+....... +.++ ........++..++....|+|.|-.....+.
T Consensus 140 ~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 218 (468)
T TIGR03810 140 RGVEGAAFINTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLS 218 (468)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhH
Confidence 5666666665554432221111111111111 01110000000 0000 0011122345678888999999988887788
Q ss_pred hhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccccc
Q 017226 167 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 206 (375)
Q Consensus 167 ~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG 206 (375)
+|.||+ |+.+|++..++..+.++|..+.+..+-..+
T Consensus 219 ~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 219 ARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred hhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 888853 889999999999999999988776554443
No 22
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00013 Score=70.78 Aligned_cols=301 Identities=12% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH-
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV- 81 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v- 81 (375)
+++...|+.+.+++.+|++...++...-...-.-++++-+.-++..++..++. .+++.+.+...++
T Consensus 72 ~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~ 138 (462)
T COG1113 72 ANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLL 138 (462)
T ss_pred hCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999888877642 2233333333322
Q ss_pred -HHHhhcCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-----hHHHHHHHHHhhhHHh
Q 017226 82 -QLILSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-----IEKMWLVAQALGDIAF 154 (375)
Q Consensus 82 -~lpl~~~r~l~~L~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~f 154 (375)
.+=+.-.|....+. |++++=++..+.+..+.+.+ +..++.++.. ..+++...+ ++...+++.++-+.+|
T Consensus 139 ~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~---~~g~snl~~hGGffP~G~~g~~~~~~~v~F 214 (462)
T COG1113 139 LAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVL-LFGGFGGGGG---AAGFSNLWDHGGFFPNGFLGFLSALQIVMF 214 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCC---CccccccccCCCcCCCchHHHHHHHHHHHH
Confidence 24555667777776 44544433222222211111 1222322211 122221111 2344568889999999
Q ss_pred hcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHH-----HHHhhhhccccccccCccCCccccccCCCCChHHHHHH
Q 017226 155 AYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT-----IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLA 229 (375)
Q Consensus 155 af~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~-----~~y~~vg~~GY~~fG~~v~~~il~n~~~~~~~~l~~~~ 229 (375)
||++.-.+=.--+|-|||+ +..+|+++.-..=.. .+..++.+.-+=.++++.++ ...-++..+-.+...+.
T Consensus 215 af~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~ 290 (462)
T COG1113 215 AFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIM 290 (462)
T ss_pred HHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccce
Confidence 9999888877789999983 667777654444344 44466677666666664333 22222211111222233
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHhh-CCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChH
Q 017226 230 NAFIVIHLVGGYQVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 308 (375)
Q Consensus 230 ~~~~~i~l~~sypl~~~p~~~~ie~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~ 308 (375)
|..+..+.+.+.==-.+-..+.+..+-.+. -|+. + ++-.+..+| +.-+.++.....++.++-+..| +
T Consensus 291 N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~-~-~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P--~ 358 (462)
T COG1113 291 NFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKA-F-AKLSKRGVP--------VNAILLSAVVLLLGVVLNYILP--E 358 (462)
T ss_pred eEEEeechhhcccccccccchHHHHHhhcCcccHh-H-hhccccCCC--------HHHHHHHHHHHHHHHHHHhhcc--h
Confidence 332222222222111223333443332110 1110 0 000011122 2335567777788888888999 5
Q ss_pred HHHHHHhhhhhhhhh--hhhhhHHHHHhcC
Q 017226 309 QVLGVIGGVIFWPLT--IYFPVEMYFKQMN 336 (375)
Q Consensus 309 ~v~~lvGs~~~~~l~--fi~P~l~~~~~~~ 336 (375)
.++.++=+..+.... ..+=.+.++|.+|
T Consensus 359 ~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 359 KVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555544443322 2333466666544
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.17 E-value=0.00066 Score=68.19 Aligned_cols=175 Identities=9% Similarity=0.048 Sum_probs=96.7
Q ss_pred CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226 9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 88 (375)
Q Consensus 9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~ 88 (375)
.|.+.+++.+|+...+.+.+...+.....+.+.....+..+....+ ......|..+..+ ++-+.-.
T Consensus 69 ~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~in~ 134 (478)
T TIGR00913 69 SFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYV-FIVIINL 134 (478)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHH-HHHHHHH
Confidence 6778889999999888888887777666666666655555432211 1112223322211 1122233
Q ss_pred CCCCchhHHHHHHHHHHHHHH--HHhhhheee-eeecCCc-cc---c-cccccccCchhHHHHHHHHHhhhHHhhcCCch
Q 017226 89 PDFHNIQSLSVIAAVMSFAYS--FIGFGLGVA-KVIGNGF-VM---G-SFSGVSTTTSIEKMWLVAQALGDIAFAYPYSL 160 (375)
Q Consensus 89 r~l~~L~~~S~~~~~~~~~~~--~i~~~~~i~-~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~ 160 (375)
+..|..+.++.+.+..-+... ++++++... ....+.. .. . +..++++........++..++....|+|.|-.
T Consensus 135 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e 214 (478)
T TIGR00913 135 FGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTE 214 (478)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHH
Confidence 455555555543322111111 111111111 1000000 00 0 00111110001124567788889999999999
Q ss_pred hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
.....-+|+||| +|+.+|++..+...+.++|....+.
T Consensus 215 ~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 215 LVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 3789999999999999999886543
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=98.17 E-value=0.00047 Score=69.65 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 201 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G 201 (375)
.+.+.++....|+|.|--.+...-+|+||| +|+.+|++..++....++|+.....-
T Consensus 220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~ 275 (499)
T PRK15049 220 LPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLL 275 (499)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778899999999999999999998 27899999988888888887655443
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.14 E-value=0.00078 Score=67.54 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 201 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G 201 (375)
.++..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|......-
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999997 37899999877777777777655543
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=98.12 E-value=0.0011 Score=65.67 Aligned_cols=177 Identities=13% Similarity=0.087 Sum_probs=104.5
Q ss_pred HHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccc---cCchh--hHHHHHHHHHh
Q 017226 11 KKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY---SDTYY--MLIFGAVQLIL 85 (375)
Q Consensus 11 ~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~--~ii~~~v~lpl 85 (375)
-+-.++.+||+..+.+.+...+.....+.++....++.+..+++....+ .+..+.. +...+ ..+...++.-.
T Consensus 70 y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (429)
T TIGR00909 70 YTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD---LPAVLTAKPGNGGVFNLPALLIVLFLTY 146 (429)
T ss_pred eeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CchhhhcCCcccccccHHHHHHHHHHHH
Confidence 3455678999998888888888777777778888888887777531000 0000000 01111 11111222223
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226 86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 165 (375)
Q Consensus 86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i 165 (375)
...+..+..++++.+.....+...++.+..+.... +.+ + ..+. . +....++..++....|+|.|.......
T Consensus 147 l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~--~--~~~~---~-~~~~~~~~~~~~~~~~af~G~e~~~~~ 217 (429)
T TIGR00909 147 ILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF-ASN--N--YTPF---M-PMGFGGVGAATALVFFAFIGFEAISTA 217 (429)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC-cHH--h--cCCC---C-CCcHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 33456677776666555433332221122222111 111 1 1111 1 122345678888999999999999999
Q ss_pred HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226 166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202 (375)
Q Consensus 166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY 202 (375)
.+|+||| +|+.+|++..++.++.++|..+.....
T Consensus 218 ~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 218 AEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 278899999999999999988865443
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.12 E-value=0.00016 Score=71.44 Aligned_cols=233 Identities=13% Similarity=0.079 Sum_probs=126.0
Q ss_pred CCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhH--HHHHHH
Q 017226 5 SPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML--IFGAVQ 82 (375)
Q Consensus 5 ~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~v~ 82 (375)
++....-+-.++++||+..+...+...+.....+.++.....+.+...+.. +. ..++....+ +..++.
T Consensus 59 p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~i~~~~~~~ 128 (426)
T PF13520_consen 59 PSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL-----NPSPWPQFLIAIILILL 128 (426)
T ss_dssp TSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG-----TCSHHHHHHHHHHHHHH
T ss_pred CCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc-----cc-----ccccchheeeeeccccc
Confidence 445556677788899998888888888877777777777776665444321 00 000111111 111222
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccc-cccccCchhHHHHHHHHHhhhHHhhcCC
Q 017226 83 LILSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSF-SGVSTTTSIEKMWLVAQALGDIAFAYPY 158 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~ 158 (375)
.-..-.+..|..++++.+.....++ ...+.++..+.....++.. +... ...|+ .....+.+++...|+|.|
T Consensus 129 ~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G 203 (426)
T PF13520_consen 129 FTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSG 203 (426)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTT
T ss_pred ceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhccc
Confidence 3333445666666666555544441 2112222222221111100 0000 01111 111257888899999999
Q ss_pred chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc---CCccc---ccc-CCCCChHHHHHHHH
Q 017226 159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT---PGNLL---TGF-GFYEPYWLIDLANA 231 (375)
Q Consensus 159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v---~~~il---~n~-~~~~~~~l~~~~~~ 231 (375)
-.......+|+|| |+.+|++..++..+.++|......-....+++. .++.. ..+ +.....+...+..+
T Consensus 204 ~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 278 (426)
T PF13520_consen 204 FEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSI 278 (426)
T ss_dssp TTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHH
T ss_pred ccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccccccc
Confidence 9999999999773 789999999999999999988666555554421 12211 010 00011233444555
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHH
Q 017226 232 FIVIHLVGGYQVYSQPIFAHFEKWIC 257 (375)
Q Consensus 232 ~~~i~l~~sypl~~~p~~~~ie~~~~ 257 (375)
...+..+.+..-.+....+.+..+-.
T Consensus 279 ~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 279 AAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhcchhhccccccc
Confidence 56666666655555555555655543
No 28
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.11 E-value=0.00055 Score=68.39 Aligned_cols=171 Identities=13% Similarity=0.030 Sum_probs=90.6
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhh
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 86 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~ 86 (375)
.-++-+-+++.+|+...+.+.+.........+.+.....++.++...+ +.+...+.+++..+. -..
T Consensus 75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~i~~~~~-~~l 140 (456)
T PRK10238 75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-------------EIPTWVSAAVFFVVI-NAI 140 (456)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCcHHHHHHHHHHHH-HHH
Confidence 345556677889999999999888888777777776666666543321 011222222221111 111
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhhee---eeeecCCcccccccc-cc--cCchhHHHHHHHHHhhhHHhhcCCch
Q 017226 87 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV---AKVIGNGFVMGSFSG-VS--TTTSIEKMWLVAQALGDIAFAYPYSL 160 (375)
Q Consensus 87 ~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i---~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~faf~~h~ 160 (375)
-....|..+.++.+.....+...++.+++++ ......+.. .... ++ +.. +....++..+++...|+|.|--
T Consensus 141 N~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e 217 (456)
T PRK10238 141 NLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA--TVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLE 217 (456)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHH
Confidence 1223344444443332222211111111111 111001100 0000 00 011 1123346677888999999999
Q ss_pred hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhh
Q 017226 161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 197 (375)
Q Consensus 161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~v 197 (375)
.....-+|+||| +|+.||++..++....++|...
T Consensus 218 ~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 218 LVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 2789999987777777777543
No 29
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.10 E-value=0.00097 Score=66.93 Aligned_cols=178 Identities=8% Similarity=-0.006 Sum_probs=97.9
Q ss_pred HHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH-HHHHhhcC
Q 017226 10 LKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA-VQLILSQA 88 (375)
Q Consensus 10 Y~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~-v~lpl~~~ 88 (375)
.-+-.++++|++..+.+.+...........++.....+.+..+++.. . .+. . ...+.....+ ...-..-.
T Consensus 75 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~--~---~~~--~--~~~~~~~~~~~~~~~~ln~ 145 (473)
T TIGR00905 75 IYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF--G---SGN--P--VPSILGASVLLWVFTFLVL 145 (473)
T ss_pred hhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--c---CCC--c--HHHHHHHHHHHHHHHHHHH
Confidence 33456889999998888888766655556666666666666665421 0 000 0 0111111111 11222334
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-hHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226 89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQD 167 (375)
Q Consensus 89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 167 (375)
+..|..+.+..+.....+...++.++..+.. .+.+....+..+ ...+. ......+..++....|+|.|-.......+
T Consensus 146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 223 (473)
T TIGR00905 146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWG-HDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSG 223 (473)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCc-cCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5666666665544432222111112112111 111100000000 00011 12334577788889999999999999999
Q ss_pred hhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226 168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202 (375)
Q Consensus 168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY 202 (375)
|+|| +|+.+|++..+..++.++|........
T Consensus 224 E~k~----~r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 224 RAKN----KSDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHhc----cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 288999999999999999987766533
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.09 E-value=0.00057 Score=68.25 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=44.3
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 199 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~ 199 (375)
.++..++....|+|.|-.......+|+||| +|+.+|++..+.....++|.....
T Consensus 199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778889999999999999999999998 267999988877777777765543
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.08 E-value=0.00042 Score=69.56 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=40.9
Q ss_pred hHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226 151 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202 (375)
Q Consensus 151 ~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY 202 (375)
.+.|+|.|-......-+|+||| +|+.+|++..+...+.++|....+.-.
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999889999998 378999999999999999987555433
No 32
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.07 E-value=0.00055 Score=68.04 Aligned_cols=172 Identities=10% Similarity=-0.037 Sum_probs=93.8
Q ss_pred CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226 9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 88 (375)
Q Consensus 9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~ 88 (375)
..-.-+++.+|+...+.+.+...........++....++.+..+++. ...+.+.+++..+ +-+.-.
T Consensus 72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~-~~~ln~ 137 (442)
T TIGR00908 72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIV-FIGINI 137 (442)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHH-HHHHHH
Confidence 34456688999988888888887777767777777777777665531 1111111111111 112222
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHh
Q 017226 89 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 167 (375)
Q Consensus 89 r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 167 (375)
+..|..+++..+..+..+....+.++... ...+. +...+...+..... +..+.+++.++....|+|.|.......-+
T Consensus 138 ~g~~~~~~i~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~ae 215 (442)
T TIGR00908 138 LGVGEAAKLEFVVTAVAIIALGVFIGAMV-PHFDSANLFNGPQTGASSFL-PGAYVGVFAAIPFAIWFFLAVEGVAMAAE 215 (442)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHh-ccCCHHHhccCCccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332222211111111111 10000 00000000000001 12234677888888999999999999999
Q ss_pred hhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226 168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGG 199 (375)
Q Consensus 168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~ 199 (375)
|+||| +|+.+|++..+..++.++|..+-+
T Consensus 216 E~k~P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 216 ETKNP---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 99997 278999999998888888876644
No 33
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.07 E-value=0.00093 Score=66.31 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=51.3
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 204 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~ 204 (375)
..++..++....|+|.|-...-..-+|+||| +|+.+|++..+...+.++|....+.-...
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568888899999999999999999999997 27899999999999999998877654433
No 34
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.06 E-value=0.0013 Score=65.43 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=47.8
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
+.++..++....|+|.|-..+.....|+||| +|+.+|++..++..+.++|....+.
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999999997 3789999998888888888875544
No 35
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.02 E-value=0.0024 Score=69.00 Aligned_cols=180 Identities=15% Similarity=0.013 Sum_probs=94.2
Q ss_pred HHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCCCCc
Q 017226 14 IINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 93 (375)
Q Consensus 14 ~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~~ 93 (375)
..++||+.....+.++....+...+..|.+-.++.+..+++..... ...++ ...........++++-+..+...+.
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~~~~~--~~~~~iia~i~l~ll~~In~~Gvk~ 224 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--IMVDP--INDIRIYGTVTVVVLLGISFAGMEW 224 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCc--cccchHHHHHHHHHHHHHHHhhHHH
Confidence 4567888777777777777777778888888888888877531100 00011 1111111111122222222334444
Q ss_pred hhHHHHHHHHHHHHHHHHhhhheeeeeecCCc---cccccccccc--CchhHHHH-HHHHHhhhHHhhcCCchhHHHHHh
Q 017226 94 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF---VMGSFSGVST--TTSIEKMW-LVAQALGDIAFAYPYSLILIEIQD 167 (375)
Q Consensus 94 L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~faf~~h~~~~~i~~ 167 (375)
-+.+..+-++..++..+.+++.++......+. ...+...+.+ .+...... +++..++++..||.|-.....+-.
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333221111111111111111000000 0000000000 00001111 266777888889999888899999
Q ss_pred hhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 168 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 168 ~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
|+|||+ +..++++..++.+++++|+.+.+.
T Consensus 305 ElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 305 DLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999982 789999999999999999988763
No 36
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.02 E-value=0.0018 Score=64.50 Aligned_cols=177 Identities=11% Similarity=0.020 Sum_probs=95.7
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH-HHh
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ-LIL 85 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~-lpl 85 (375)
.-+.-+.+++.+|++..+.+.+.........+.+.....++.+....+. . ..|.+..+++. .-.
T Consensus 75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~ 139 (452)
T TIGR01773 75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTL 139 (452)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHH
Confidence 3466778889999998888888877776666666666665555443210 1 12332222211 122
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHH--HHhhhheeeeeecCCcccc-ccccccc-Cc-hhHHHHHHHHHhhhHHhhcCCch
Q 017226 86 SQAPDFHNIQSLSVIAAVMSFAYS--FIGFGLGVAKVIGNGFVMG-SFSGVST-TT-SIEKMWLVAQALGDIAFAYPYSL 160 (375)
Q Consensus 86 ~~~r~l~~L~~~S~~~~~~~~~~~--~i~~~~~i~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~faf~~h~ 160 (375)
.-.+..|..+.+....++.-+... +++++....... .+..+. ...++.+ .. .+....++..++....|+|.|-.
T Consensus 140 ~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e 218 (452)
T TIGR01773 140 TNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGF-APGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTE 218 (452)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHH
Confidence 222344545444433332211111 111111111100 010000 0000000 00 01223357888999999999999
Q ss_pred hHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccc
Q 017226 161 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 202 (375)
Q Consensus 161 ~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY 202 (375)
.....-+|+||| +|+.||++..+.....++|+...+...
T Consensus 219 ~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 219 IVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 999999999997 278999998888888888887544333
No 37
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.95 E-value=0.0012 Score=65.63 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=48.3
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
..++..++....|+|.|-.......+|+||| +|+.+|++..++.++.++|..+...
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999999999998 2789999999999999999876653
No 38
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.91 E-value=0.0026 Score=63.83 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 143 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 143 ~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
.++..++....|+|.|-..+...-+|+||| +|+.+|++..++..+.++|+...+.
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~ 260 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLV 260 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778899999999999999999998 3789999999998888889877653
No 39
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.88 E-value=0.0026 Score=65.09 Aligned_cols=178 Identities=10% Similarity=0.039 Sum_probs=96.8
Q ss_pred HHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhcc--ccC--CCCccccccCc-hhhHHHHHHHHHhhcCC
Q 017226 15 INVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY--HRE--GHEAACEYSDT-YYMLIFGAVQLILSQAP 89 (375)
Q Consensus 15 ~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~--~~~--~~~~~~~~~~~-~~~ii~~~v~lpl~~~r 89 (375)
++++|+...+++.+...+.....+.+.....++.+..++..... ... +.+.+ ..... .+..+..++++-....+
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHh
Confidence 45688888888888777666554544444555555555532000 000 00000 01111 11111112222233446
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCccccccc---ccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHH
Q 017226 90 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS---GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 166 (375)
Q Consensus 90 ~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 166 (375)
..|..++++.+.+...+....++++.+.... + ..+++.. +.++.. +....+++.+.....|+|.|--.+...-
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~-~--~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~a 254 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKA-D--VANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTG 254 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhC-C--chhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 7777777766555433332222222222221 0 0111100 000011 1123467888889999999999999999
Q ss_pred hhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 167 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 167 ~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
+|.|||+ |+.+|++..++.++.++|..+.+.
T Consensus 255 eE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 255 EEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred HhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999982 789999999999999999877654
No 40
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.85 E-value=0.0079 Score=60.50 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=38.7
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHh
Q 017226 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYL 195 (375)
Q Consensus 144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~ 195 (375)
....++....|+|.|-......-+|+||| +|+.+|++..+..++.+++.
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGF 266 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHH
Confidence 45555666779999999999999999997 37899999988877655433
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.80 E-value=0.0011 Score=65.30 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=148.4
Q ss_pred HHhhCcCcchhHHHHHHHHHhhhh-hhhhhhhhhh-HHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCCCC
Q 017226 15 INVSGKTNAWACSFFVHVGLYGTA-IAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 92 (375)
Q Consensus 15 ~~~~G~~~~~~v~i~~~~~~~g~~-v~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~ 92 (375)
.++||+.......+.-.+...... ..+-+..++. ++..++ . |...+ ...-..+..++-+.-..|..
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~-~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPR-VASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCch-HHHHHHHHHHHHHHHHHhhh
Confidence 356777655444444333333333 5566666665 444433 1 22222 22223333333334445777
Q ss_pred chhHHHHHHHHHHH---HHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHHHhhh
Q 017226 93 NIQSLSVIAAVMSF---AYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL 169 (375)
Q Consensus 93 ~L~~~S~~~~~~~~---~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 169 (375)
.+++.+.+-.++++ +...++++..++....+...+.+..++.. + ..+.-++..++=.-.|||.|=.++=-+-+|+
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g-~-~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG-S-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc-C-cCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 77776665555443 22222333444433322111000010111 1 1222346667777889999988888889999
Q ss_pred CCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCccCCccccc------cCC-CCChHHHHHHHHHHHHHHHHhhh
Q 017226 170 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------FGF-YEPYWLIDLANAFIVIHLVGGYQ 242 (375)
Q Consensus 170 ~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v~~~il~n------~~~-~~~~~l~~~~~~~~~i~l~~syp 242 (375)
||| +|++|+++..|+.++++.|+.+-+..+-+-- .++++.+ +.+ ..+++. .+.-++++++.+.+.=
T Consensus 231 knP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n 303 (479)
T KOG1287|consen 231 KNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLN 303 (479)
T ss_pred cCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhh
Confidence 998 3889999999999999999998876554442 2233222 110 001222 3344555666655543
Q ss_pred ccccchHHHHHHHHHh-hCCCCCCCccccccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHhccChHHHHHHHhhhhhhh
Q 017226 243 VYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP 321 (375)
Q Consensus 243 l~~~p~~~~ie~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vp~~~~v~~lvGs~~~~~ 321 (375)
-.++-....+...-.+ ..|+. ++.. + .+...-+ .....-....++...+.|++++++.++=.....
T Consensus 304 ~~ifs~SR~~~~~areG~LP~~-~s~i-~---------~~~~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~ 370 (479)
T KOG1287|consen 304 SVIFSSSRLFYAGAREGHLPAF-FSMI-S---------VRRFTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF 370 (479)
T ss_pred hHHHHHHHHHHHHHHccCccHH-HHhh-c---------CCCCCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2233332222221111 01110 0000 0 0000111 112233444445556678999999988777777
Q ss_pred hhhhhhhHHHHHhcCcc
Q 017226 322 LTIYFPVEMYFKQMNIE 338 (375)
Q Consensus 322 l~fi~P~l~~~~~~~~~ 338 (375)
..+.+=+++++|.++++
T Consensus 371 ~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 371 RGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 88888899999986544
No 42
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.75 E-value=0.0027 Score=64.28 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhh
Q 017226 146 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 198 (375)
Q Consensus 146 ~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg 198 (375)
...+..+.|+|.|--.....-+|+||| +|+++|++..++.++.++|....
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 344445688999999999999999998 27899999999888888887643
No 43
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.54 E-value=0.0067 Score=61.35 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=49.2
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 201 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~G 201 (375)
..++..++....|+|.|-.......+|+||| +|+.+|++..+...+.++|..+.+.-
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778889999999999999999999997 27899999999999999999885443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.47 E-value=0.01 Score=59.05 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=108.4
Q ss_pred CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--HHHhh
Q 017226 9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILS 86 (375)
Q Consensus 9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v--~lpl~ 86 (375)
.+-+-+++.+|++..+.+.+...........+..+..++.+....+.. ... ..+...+..+..+. .+-+.
T Consensus 77 G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~l 148 (466)
T COG0531 77 GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP----GLL----SIGPLLIILIALALIALLTLL 148 (466)
T ss_pred CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhh----cCCchHHHHHHHHHHHHHHHH
Confidence 445556788998888888888888887777777777777666655420 000 01111222222221 22333
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCc-hhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226 87 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEI 165 (375)
Q Consensus 87 ~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i 165 (375)
-.+..|...+...+.....+...++.....+.....++ ... .++.+ .......+..+++...++|.|-....+.
T Consensus 149 n~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 223 (466)
T COG0531 149 NLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN---GNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATL 223 (466)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---ccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 34556666655555544443322222222222211111 000 11011 1112224778888999999999999999
Q ss_pred HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226 166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 207 (375)
Q Consensus 166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~ 207 (375)
-+|+|||+ |+.+|++..++..+.++|....+.-....++
T Consensus 224 a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 224 AEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999972 6689999999999999999888877777665
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.44 E-value=0.11 Score=52.11 Aligned_cols=53 Identities=8% Similarity=-0.142 Sum_probs=41.5
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhc
Q 017226 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 199 (375)
Q Consensus 144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~ 199 (375)
.+..+.....|+|.|-.....+-+|+||| +|+.||++..++.+..++|...-+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHH
Confidence 45556666789999999999999999998 378999999998877665544443
No 46
>PRK10836 lysine transporter; Provisional
Probab=97.43 E-value=0.047 Score=55.03 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
.+..+.....|+|.|-..+...-+|+||| +|+.+|++..++..+.++|......
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~ 259 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILI 259 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556679999999999999999997 3789999999999999999877544
No 47
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.41 E-value=0.014 Score=56.24 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHH
Q 017226 6 PSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLI 84 (375)
Q Consensus 6 ~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lp 84 (375)
+..+..|..++++||+......+....+.+..+..-....++.++... . + + ...|.+... ++..-
T Consensus 62 p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l-~-------~--tp~~~~~l~~l~~~~ 127 (359)
T TIGR00912 62 PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----L-P-------R--TPIIVIIILIIIVSI 127 (359)
T ss_pred CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C-------C--CCHHHHHHHHHHHHH
Confidence 345899999999999988888887777776665555555555443322 1 0 0 112322211 22222
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHH-HHHhhhheeeeeecCCcccccccccccCchhHHHHHHHH-HhhhHHhhcCCchhH
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFAY-SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQ-ALGDIAFAYPYSLIL 162 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~faf~~h~~~ 162 (375)
....+.++..+.++.+-....+.. .++...... ... +. + ...++ . +....+... +.+...++|.+....
T Consensus 128 ~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~-~~~--~~-~-~l~P~---~-~~g~~~~~~~~~~~~~~~f~g~~i~ 198 (359)
T TIGR00912 128 YIVRKGIEVLLRTAEILLIIFLILFILVLILLAP-KLG--NI-K-NLLPV---L-ENGLSPILKGAYPVVTFAFGEIEIF 198 (359)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc--cH-H-HccCc---c-ccCcHHHHhhhhHHhhhhhHHHHHH
Confidence 233356777777665554332221 111111111 100 00 0 01111 0 112223333 334677888877777
Q ss_pred HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226 163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 209 (375)
Q Consensus 163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v 209 (375)
.....++++| ++.+|+...+..++.++|..+-+.....+|.+.
T Consensus 199 ~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 199 FLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 7777888875 788999999999999999988888888887543
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.22 E-value=0.052 Score=54.86 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 144 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 144 ~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
++..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|....+.
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence 46667778899999999999999999998 3789999999999999999876443
No 49
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.80 E-value=0.043 Score=54.61 Aligned_cols=194 Identities=16% Similarity=0.060 Sum_probs=102.4
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccc--cCchhhHHHHH
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY--SDTYYMLIFGA 80 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~ii~~~ 80 (375)
+|++. ++.-+.|..||.+|..+..++..+..+|=........++.+..+++....+ ..+ .+.+. ......+++.+
T Consensus 72 ~r~Gl-~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~-~~~-~~~~~t~~~~~~~~i~~~ 148 (442)
T TIGR00800 72 AKYGL-PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPG-YLH-LGNGMTTLELICFIIFWA 148 (442)
T ss_pred HHhCC-CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-ccc-cCCcccHHHHHHHHHHHH
Confidence 34444 667789999999999999999999999999999999999998888763211 000 00000 01122334445
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-cCchhHHHHHHHHHhhhHH-hhcCC
Q 017226 81 VQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-TTTSIEKMWLVAQALGDIA-FAYPY 158 (375)
Q Consensus 81 v~lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-faf~~ 158 (375)
+.+++....-.+-.+.....+....+.. +...+....+. ++..+ ..+.+ +.++....+++..++...+ +.-..
T Consensus 149 l~~~~~~~~g~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~g~~~--~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~ 223 (442)
T TIGR00800 149 LVLVFLFFFGYKIRHLFEWLAVVPPFAA-FGMLIWALSKA--HGKGP--LGELTGTLHGSTGAWAFLYALSLVIGSFATW 223 (442)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc--CCCCc--cccCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 5566555544444444444443321111 11111111111 11000 00000 0111233445555554433 22233
Q ss_pred chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccc----ccCc
Q 017226 159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDN 208 (375)
Q Consensus 159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~----fG~~ 208 (375)
-.+.++..+.+|+| ++-.+....++....+....+|+.+-.. +|+.
T Consensus 224 ~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 224 ATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45678888888875 3333345556666666666677766655 7764
No 50
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.78 E-value=0.16 Score=49.66 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=62.4
Q ss_pred CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226 2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 81 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v 81 (375)
|+|++ .++.-+.|..||++|..+..+...+...|=-.......++.+..+.+... +. .+...+.++++++
T Consensus 53 G~~~G-l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~----~~-----~~~~~~~~i~~~l 122 (386)
T TIGR02358 53 GADTG-LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF----GE-----ESPMLWILIVGIL 122 (386)
T ss_pred hcccC-cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC-----CchHHHHHHHHHH
Confidence 44444 47888999999999999999999999999999999999999999886421 11 1122344455554
Q ss_pred HHHhhcCCCCCchhHHHHHHHH
Q 017226 82 QLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 82 ~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
..+.+.. -.|.++++..++..
T Consensus 123 ~~~~~~~-G~~~i~~~~~~~~~ 143 (386)
T TIGR02358 123 VTLWLLS-GPLAFVWLNNWSVW 143 (386)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH
Confidence 5555543 44556666655544
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.67 E-value=0.0085 Score=60.18 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 208 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~ 208 (375)
..++..++....++|.|-......-+|.||| +|+.||++..++....++|......--...+.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 4568899999999999999999999999998 378999999999999999988777655555543
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.62 E-value=0.13 Score=48.22 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHH
Q 017226 2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFG 79 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--ii~~ 79 (375)
+.+-+.++|+|.-++.+|++.....|+.+..+++++++.-+--.++.+++.++. + .|+ ++..
T Consensus 60 g~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------------P--~wiGali~i 123 (349)
T COG3949 60 GKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------------P--YWIGALIII 123 (349)
T ss_pred HHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------------c--HHHHHHHHH
Confidence 456678999999999999999999999999999999999888888887777632 1 233 3333
Q ss_pred HHHHHhhcCCCCCchhHHH
Q 017226 80 AVQLILSQAPDFHNIQSLS 98 (375)
Q Consensus 80 ~v~lpl~~~r~l~~L~~~S 98 (375)
....-+-++++.+.+-.+.
T Consensus 124 ~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 124 LLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHhcccceeeeh
Confidence 4444555666677665444
No 53
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.60 E-value=0.94 Score=45.62 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226 3 PKSPSHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 81 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v 81 (375)
+|.+..|..|.-++-||++. +....+...+..++...+.+.-.+..++.+++ ++...-+++.+++
T Consensus 103 r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~i 168 (483)
T PRK09442 103 RKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGIT 168 (483)
T ss_pred HHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHH
Confidence 56788999999999999764 55666666666666666667777777776652 1122234445556
Q ss_pred HHHhhcCCCCCchhHHHHHHHH
Q 017226 82 QLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 82 ~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
..-.+.+.-++...++..+=.+
T Consensus 169 v~iYt~~GGl~av~~TD~iQ~~ 190 (483)
T PRK09442 169 VALYTAFGGFRAVVLTDALQGI 190 (483)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6677788888888888765544
No 54
>PRK11375 allantoin permease; Provisional
Probab=96.59 E-value=0.31 Score=49.07 Aligned_cols=49 Identities=4% Similarity=-0.108 Sum_probs=38.5
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHH-HHHhhhhhhhhhhhhhhHHHHHHh
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKS 55 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~-~~~~g~~v~y~i~~~~~l~~l~~~ 55 (375)
..++.-+.|..||.+|..+..+... +..+|=-.....+.++.+..+++.
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999888888874 566777777777788888777654
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.18 Score=49.69 Aligned_cols=180 Identities=16% Similarity=0.118 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226 2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 81 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v 81 (375)
|++++..++ .++|+.||.+|.++..+...+.+.|-...-.+..++. ..+ . + ..+...|+++.+++
T Consensus 76 Ga~~Glpqm-i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~----~----~~~~~~~ili~g~l 140 (442)
T COG1457 76 GARTGLPQM-ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G----T----GLPVWAGILIIGVL 140 (442)
T ss_pred ccccCCChh-eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C----C----CCcHHHHHHHHHHH
Confidence 566666665 4689999999999999999999999999999888876 111 0 1 12344566666665
Q ss_pred HHHhhcC--CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHH-hhcCC
Q 017226 82 QLILSQA--PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPY 158 (375)
Q Consensus 82 ~lpl~~~--r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~ 158 (375)
+...+.. |-++++.+.+....+..+.+.+. ... +.. +..+. ... ..+.+.-++..+++... +.-..
T Consensus 141 ~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~---~~~-~~~--~~~~~-~~~----~~~~~~~~fl~a~slv~g~~~sw 209 (442)
T COG1457 141 MTLVTIFGYRALHKLERIAVPLLLLLFLYLLA---LLF-RSK--GGLDA-LWV----KGPTSPLSFLSALSLVIGSFASW 209 (442)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHH-hcc--cccce-eec----cCCCcchhHHHHHHHHHHHHHhh
Confidence 5555544 56666666665554433222211 111 100 10010 000 00111112222222211 11223
Q ss_pred chhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226 159 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 209 (375)
Q Consensus 159 h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v 209 (375)
-+...+..+-+|+|+| ++--.....+......+-+++|...-.+=|+.-
T Consensus 210 ~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 210 GPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4456677778887643 233334455666677777888888888887754
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.25 E-value=0.2 Score=50.01 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCc
Q 017226 141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 208 (375)
Q Consensus 141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~ 208 (375)
+-|.+..++-.-+..+.|--....+-+|-||+ .++-||++..+..+..++-..+-+.-..+-++|
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44667777777777788877888888999986 267899888877777666544444444455544
No 57
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.19 E-value=1.6 Score=44.05 Aligned_cols=86 Identities=9% Similarity=-0.012 Sum_probs=63.2
Q ss_pred CCCCCCCCHHHHHHHhhC-cCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226 2 GPKSPSHNLKKEIINVSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA 80 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G-~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 80 (375)
..+.+..|..|.-++=|| ++.|.+..+...+...+-+...+.-.+..++..+.. +...-+++.+.
T Consensus 99 ~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~ 164 (493)
T COG0591 99 AKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGAL 164 (493)
T ss_pred hcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHH
Confidence 356678999999999999 888999999999999999999999998887554421 11112233445
Q ss_pred HHHHhhcCCCCCchhHHHHHH
Q 017226 81 VQLILSQAPDFHNIQSLSVIA 101 (375)
Q Consensus 81 v~lpl~~~r~l~~L~~~S~~~ 101 (375)
++..-..+--++...++..+=
T Consensus 165 ~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 165 IVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHHHHHHHcChhHHHHHHHHH
Confidence 555666666777777777654
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.13 E-value=1.7 Score=43.56 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226 3 PKSPSHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 81 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v 81 (375)
+|.+..|..|.-++-||++. ++...++..+..++...+.+.-.+..++.+++ ++.+.-+++.+++
T Consensus 102 ~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~i 167 (471)
T TIGR02119 102 RKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSS 167 (471)
T ss_pred HHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
Confidence 46788999999999999664 67888888888888877777777777776653 1222334445555
Q ss_pred HHHhhcCCCCCchhHHHHHHHH
Q 017226 82 QLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 82 ~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
..-.....-++...++..+=.+
T Consensus 168 v~iYt~~GG~~av~~td~iQ~~ 189 (471)
T TIGR02119 168 VLIYTTFGGFRAVALTDAIQGI 189 (471)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 6677777888888888765543
No 59
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.10 E-value=0.074 Score=50.45 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHH-HHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF-GAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~v~ 82 (375)
+.+..+..|..++.+||+..+...+....+.+......+...+|.++...- + + ...|.+.. ....
T Consensus 58 ~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p-~---------TP~~~i~~~~ll~ 123 (320)
T PF03845_consen 58 RFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P-E---------TPIWVIILLFLLV 123 (320)
T ss_pred HCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-c---------CCHHHHHHHHHHH
Confidence 456789999999999999888888888888888777777777776655431 0 0 11233222 2222
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhH
Q 017226 83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 162 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~ 162 (375)
.--.-.+.++.++..+.+-....+...+++..... +.. +.+ .+.++ ...+..+.+.+.-...+.|.+-...
T Consensus 124 ~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~-~~~---~~~-~l~P~----~~~g~~~i~~~~~~~~~~~~~~~~~ 194 (320)
T PF03845_consen 124 AAYAARKGIEVIARVAEILFPIFLILLLLILLLSI-PNI---DWD-NLLPV----LESGIKPILKGSLVISFPFGGIEIL 194 (320)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC---CHH-HeeCc----ccCChHHHHHHHHHHHHHHHHHHHH
Confidence 23334467777776554333322221111122222 111 000 11111 1123334565655666777776666
Q ss_pred HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccCcc
Q 017226 163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 209 (375)
Q Consensus 163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~v 209 (375)
.-+...+++| ++..|....+.....++|...-+.....||.+.
T Consensus 195 l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 195 LFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 6777888875 677888888888888888887777788888643
No 60
>PRK11017 codB cytosine permease; Provisional
Probab=95.33 E-value=0.87 Score=44.76 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 017226 2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ 53 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~ 53 (375)
|+|.+ .++.-++|..||.+|..+..+...+...|=......+.++.++++.
T Consensus 66 G~k~G-~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 66 GAKTG-LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred HhccC-cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444 4788899999999999998888888887766666666666655543
No 61
>PRK12488 acetate permease; Provisional
Probab=94.98 E-value=5 Score=41.15 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHhhC-cCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G-~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|..|.-++=|| ++.|.+..+...+..+.-..+.+.-.+..++.++. ++...-+++.+++.
T Consensus 126 ~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~ 191 (549)
T PRK12488 126 NLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALM 191 (549)
T ss_pred HCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence 4456899999998888 55788888888777777777777777776666642 11222244455566
Q ss_pred HHhhcCCCCCchhHHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~ 103 (375)
.--+..-=++...++..+=.+
T Consensus 192 ~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 192 VLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHHhccchhHHHHHHHHHHH
Confidence 666777788888877766544
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=94.74 E-value=3.5 Score=40.43 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|..|.-++-||++ .+....+...+..+....+.+.-.+..++.+.+ ++.+.-+++.+++.
T Consensus 62 ~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~ 127 (407)
T TIGR00813 62 NNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAIT 127 (407)
T ss_pred HcCCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHH
Confidence 456889999999999984 667777777888888888888888887777653 11222334444555
Q ss_pred HHhhcCCCCCchhHHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~ 103 (375)
.--...--++...++..+=.+
T Consensus 128 ~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 128 ILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred HHHHHHcchHHHHHHHHHHHH
Confidence 566777788888887766544
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.26 E-value=0.25 Score=48.49 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHhhCcCc--chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 81 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~--~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v 81 (375)
|.+..|..|.-++-||++. +.+..+...+....-....+.-.+..++.+.+ ++....+++.+++
T Consensus 65 ~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i 130 (406)
T PF00474_consen 65 RSGAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVI 130 (406)
T ss_dssp HTT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHH
Confidence 4677899999999999988 55555556666666666666666666555542 1222334445556
Q ss_pred HHHhhcCCCCCchhHHHHHHHHH
Q 017226 82 QLILSQAPDFHNIQSLSVIAAVM 104 (375)
Q Consensus 82 ~lpl~~~r~l~~L~~~S~~~~~~ 104 (375)
.+-....-=++...++..+=.+.
T Consensus 131 ~~iYt~~GGl~av~~td~iQ~~i 153 (406)
T PF00474_consen 131 VIIYTFFGGLRAVAWTDFIQGVI 153 (406)
T ss_dssp HHHTTCTT------SHHHHHHHH
T ss_pred HHHhhhhhhHhhhhHHHHHHHHH
Confidence 66677777888888877665543
No 64
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.89 E-value=2.9 Score=42.78 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=97.2
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc-ccccccCc--cCCccccccC
Q 017226 142 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF-GYAAFGDN--TPGNLLTGFG 218 (375)
Q Consensus 142 ~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~-GY~~fG~~--v~~~il~n~~ 218 (375)
+.++..++.+..|+|.|--.+-..-.|-|||+ |..|+++..++..+..+|....+. |-..=.++ ..++-...-|
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 34577888899999999988888889999983 789999999999999999877653 22222232 2222211101
Q ss_pred CC---CChHHH---HHHHHHHHHHHHHhhhccccchHHHHHHHHHhhC-CCCCCCccccccCCCCCCcCCCcchhhhHHH
Q 017226 219 FY---EPYWLI---DLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF-PENGFLNNEFFLKPPLMPAFRWNPLRLCFRT 291 (375)
Q Consensus 219 ~~---~~~~l~---~~~~~~~~i~l~~sypl~~~p~~~~ie~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~ 291 (375)
.. ...+.. .+.++...+.++.+---.+++.-+.+..+-.+.. |+ +..+-++..+| .+ -..
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P---------~~--a~~ 374 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVP---------LV--AVL 374 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc---------hh--HHH
Confidence 00 011112 2566666666665554446677777766543211 11 00110000112 11 112
Q ss_pred HHHHHHHHHHHhccC-----hHHHHHHHhhhhhhhhhhhhhhHHHHHh
Q 017226 292 VYVVSVTAIAMSFPY-----FNQVLGVIGGVIFWPLTIYFPVEMYFKQ 334 (375)
Q Consensus 292 ~~~~~~~~iA~~vp~-----~~~v~~lvGs~~~~~l~fi~P~l~~~~~ 334 (375)
+..++..+.++.... ++.++++.|--+ .+++.+=++.|++.
T Consensus 375 v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~ 420 (554)
T KOG1286|consen 375 VSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRF 420 (554)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeee
Confidence 222334444444433 588888877443 56666656666665
No 65
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.54 E-value=9.4 Score=38.65 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHhhCcCcchh---HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA 80 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~---v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 80 (375)
+.+..|-.|.-++=||++.|.+ ..+...+....-+.+.+...+..++.++. ++...-+++.++
T Consensus 104 ~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~ 169 (502)
T PRK15419 104 NNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAA 169 (502)
T ss_pred hcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHH
Confidence 3467788899999999765443 33334444444444444445555554432 222223444556
Q ss_pred HHHHhhcCCCCCchhHHHHHHHH
Q 017226 81 VQLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 81 v~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
+.+--+..-=++...++-.+=.+
T Consensus 170 iv~iYt~~GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 170 ATILYTFIGGFLAVSWTDTVQAS 192 (502)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 66677777778887777765544
No 66
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=92.19 E-value=14 Score=37.19 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHhhCcCcchh---HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA 80 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~---v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 80 (375)
|.+..|-.|.-++=||++.+.+ ..+...+....-....+.-.+..++.+++ ++...-+++.++
T Consensus 100 ~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~ 165 (487)
T TIGR02121 100 AHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGAL 165 (487)
T ss_pred hcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHH
Confidence 5678899999999999765443 33333333333344444455555555442 112223344445
Q ss_pred HHHHhhcCCCCCchhHHHHHHHH
Q 017226 81 VQLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 81 v~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
+..--...--++...++..+=.+
T Consensus 166 i~~~Yt~~GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 166 IIVIYTFFGGFLAVSWTDFVQGL 188 (487)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 55566666777777777665443
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=91.74 E-value=17 Score=37.24 Aligned_cols=85 Identities=8% Similarity=-0.068 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|..|.-++=||.+ .|.+..+...+..+.-....+.-.+..++.++. ++.+.-+++.+++.
T Consensus 126 r~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~ 191 (549)
T TIGR02711 126 NLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILM 191 (549)
T ss_pred HcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
Confidence 446689999999888754 577767666666666566666666666665542 11222234444555
Q ss_pred HHhhcCCCCCchhHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAA 102 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~ 102 (375)
.--...-=++...++..+=.
T Consensus 192 ~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 192 VMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHH
Confidence 55666667777666665443
No 68
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=91.20 E-value=18 Score=36.53 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhh
Q 017226 141 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 196 (375)
Q Consensus 141 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~ 196 (375)
.+.++...+-+..|+|.|.-.+---..|-+|| +|..||+++..+.=..++|+.
T Consensus 232 gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~ 284 (541)
T COG0833 232 GFKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYIL 284 (541)
T ss_pred chHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence 34567778888889999988877777899987 378899998888777777743
No 69
>PRK09395 actP acetate permease; Provisional
Probab=81.41 E-value=68 Score=32.91 Aligned_cols=85 Identities=8% Similarity=-0.058 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHhhCc-CcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~-~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|+.|.-+.=||+ +.|....+...+..+.-..+.+.-.+..++.+.. ++...-+++.+++.
T Consensus 128 ~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~ 193 (551)
T PRK09395 128 NLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLM 193 (551)
T ss_pred hCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence 45678999999999985 4677777776665555555555556655555542 12222344445555
Q ss_pred HHhhcCCCCCchhHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAA 102 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~ 102 (375)
.--+..-=++...++..+=.
T Consensus 194 ~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 194 MVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred HHHHhhcchHHHHHHHHHHH
Confidence 66666677777777766443
No 70
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=80.51 E-value=63 Score=31.92 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=39.8
Q ss_pred CCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 017226 8 HNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ 53 (375)
Q Consensus 8 ~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~ 53 (375)
.+..|..++-++++..++..+...+....++++-.+-.+--++-++
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888999999999999999999999999888888877765
No 71
>PRK10484 putative transporter; Provisional
Probab=79.85 E-value=74 Score=32.37 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhh-hhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYT-VTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFGA 80 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~-i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--ii~~~ 80 (375)
|.+..|-.|.-++=||++.+........+......+... ...+..+.+++.. ...-+- +.....++ ++.++
T Consensus 97 r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--~~~~gi----~~~~~~~~~~~~~~~ 170 (523)
T PRK10484 97 KSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--SELLGI----SYGAAIWLLVWLIGI 170 (523)
T ss_pred hcCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhcCC----cHHHHHHHHHHHHHH
Confidence 456789999999999998877666654444333322222 2233333443321 000000 01111121 11233
Q ss_pred HHHHhhcCCCCCchhHHHHHHHH
Q 017226 81 VQLILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 81 v~lpl~~~r~l~~L~~~S~~~~~ 103 (375)
+..--+..-=++...++-.+=.+
T Consensus 171 i~~~Yt~~GGl~aV~~TD~iQ~v 193 (523)
T PRK10484 171 IGAIYAVFGGLKAVAVSDTINGI 193 (523)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHH
Confidence 44555666677777777765544
No 72
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=79.77 E-value=3.2 Score=40.37 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 017226 6 PSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 85 (375)
Q Consensus 6 ~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl 85 (375)
+..--.+++++.||+.|+.+..+.+.+-|++++++.+...+|.++++.+. .+.+.|.++..++..-+
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~i 319 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIV 319 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHH
Confidence 34445688999999999999999999999999999999999988877531 33455666655554444
Q ss_pred hcCCCCCchhHHH
Q 017226 86 SQAPDFHNIQSLS 98 (375)
Q Consensus 86 ~~~r~l~~L~~~S 98 (375)
+.. .++++-..+
T Consensus 320 a~~-Gl~~Ii~~~ 331 (378)
T TIGR00796 320 ANL-GLTQIISIS 331 (378)
T ss_pred HHh-CHHHHHHHH
Confidence 432 444444443
No 73
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=76.36 E-value=6.3 Score=38.93 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=53.9
Q ss_pred CHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhc
Q 017226 9 NLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ 87 (375)
Q Consensus 9 sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~ 87 (375)
-..+++++.+|+.|..+..+++.+-|+-+|++-....+|.++++.+. .+.+.|.++++++-..++.
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999998752 3456677776665555443
No 74
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=75.75 E-value=0.69 Score=45.90 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHh
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 55 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~ 55 (375)
+|++. ++..++|..||.+|..+..+...+.+.|=...-..+.++.+..+.+.
T Consensus 67 ~r~Gl-~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 67 PRTGL-PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp HCC----HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCC-CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444 67778899999999999999999999999999999999999999875
No 75
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=72.99 E-value=12 Score=36.13 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHH
Q 017226 2 GPKSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 50 (375)
Q Consensus 2 ~~~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~ 50 (375)
+-|.+-+|.+|++++-.|+++|.+..+.....+.-+..++....++.+.
T Consensus 108 SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 108 SVRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5577889999999999999999999999999999999999888877643
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=71.56 E-value=1.3e+02 Score=30.96 Aligned_cols=84 Identities=6% Similarity=-0.101 Sum_probs=53.8
Q ss_pred CCCCCCHHHHHHHhhCcC-cchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~-~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|-.|.-++=||++ .+....+...+..+.-....+.-.+..++.+.. ++...-+++.+++.
T Consensus 91 r~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~ 156 (552)
T TIGR03648 91 KFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIV 156 (552)
T ss_pred HCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
Confidence 456788889889999865 577777777777776666666666666666552 11222234444555
Q ss_pred HHhhcCCCCCchhHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIA 101 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~ 101 (375)
.--+..-=++...++-.+=
T Consensus 157 ~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 157 FFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 5566666777776666544
No 77
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=67.36 E-value=12 Score=36.57 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=53.3
Q ss_pred HHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhc
Q 017226 10 LKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ 87 (375)
Q Consensus 10 Y~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~ 87 (375)
-.+..++.||+-|+.+..+++.+-|+-+++.-+...+|.++++.+. .+.+.|..+++++-+.++-
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan 329 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999998863 4456677777766544443
No 78
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=66.21 E-value=8.1 Score=33.93 Aligned_cols=155 Identities=14% Similarity=0.230 Sum_probs=84.2
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhcc-ccCC-CCcccc------cc--------
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY-HREG-HEAACE------YS-------- 70 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~-~~~~-~~~~~~------~~-------- 70 (375)
....+|.+..-|.+.+-.+..+++++++||-...|--.+-.+.-++.-.-.. ..-+ ..|+|+ |.
T Consensus 129 kvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmda 208 (319)
T KOG3832|consen 129 KVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDA 208 (319)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHH
Confidence 4457788888999999999999999999999999988877766555432100 0001 112332 11
Q ss_pred CchhhHHHHHH-HHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHh
Q 017226 71 DTYYMLIFGAV-QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQAL 149 (375)
Q Consensus 71 ~~~~~ii~~~v-~lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
.|.+++++.++ ++|+.+. ++.+-+++-.+...+--+ .++ .+.+.... +. ..|.+ +. .++....-++-.-+
T Consensus 209 yr~flaiftlll~lpftf~-diqktk~iqiltslmrw~-~~~-~g~~l~tm-qa-eedaa-~a---~p~arc~cgfgkl~ 279 (319)
T KOG3832|consen 209 YRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWA-AFI-LGISLATM-QA-EEDAA-AA---HPPARCFCGFGKLF 279 (319)
T ss_pred HHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHH-hcc-chhhhhhh-hh-ccccc-cc---CCcccccccccccc
Confidence 22334444433 3565543 555555555444332211 011 11111110 10 11111 11 12233333445567
Q ss_pred hhHHhhcCCchhHHHHHhhhC
Q 017226 150 GDIAFAYPYSLILIEIQDTLK 170 (375)
Q Consensus 150 ~~~~faf~~h~~~~~i~~~m~ 170 (375)
+...|+|.||.+.|.....++
T Consensus 280 ~~aly~~~a~cmapda~gagq 300 (319)
T KOG3832|consen 280 GCALYAFMAHCMAPDAIGAGQ 300 (319)
T ss_pred chhhHHHHhhccCCCCCCCCe
Confidence 888999999999998777665
No 79
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=50.55 E-value=27 Score=34.66 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=50.6
Q ss_pred HHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcC
Q 017226 11 KKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 88 (375)
Q Consensus 11 ~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~ 88 (375)
....++.+|++++.+..+.+.+-|+-++++-..-.++.+++..+ .+.+.|.++..++..+++.+
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999998777652 23456676666666666543
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=46.75 E-value=2.7e+02 Score=26.63 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhc
Q 017226 8 HNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ 87 (375)
Q Consensus 8 ~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~ 87 (375)
++-.|..++-+|++..++.-+...+.+.....+-+.-.+.-++.+.. .+...|.++.++..+-+.+
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888777777777766666665554431 2234455555544444444
Q ss_pred --CCCCCchhHHHH
Q 017226 88 --APDFHNIQSLSV 99 (375)
Q Consensus 88 --~r~l~~L~~~S~ 99 (375)
.++.|.+.....
T Consensus 108 ~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 108 LSSGGYRRLERILK 121 (358)
T ss_pred HHhccchHHHHHHH
Confidence 677777776654
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=46.24 E-value=3.1e+02 Score=27.25 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI 52 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l 52 (375)
..+-.|+.++-+|++..++.-+...+-+.+..++-++-.+.-++.+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999988777766666666666666555554444433
No 82
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=44.40 E-value=54 Score=29.49 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhccChHHHHHHH---------hhhhhhhhhhhhhhHHHHHhcCcch------hhHHHHHHHHHHHHHH
Q 017226 291 TVYVVSVTAIAMSFPYFNQVLGVI---------GGVIFWPLTIYFPVEMYFKQMNIEA------WTRKWVMLRVFSYVCF 355 (375)
Q Consensus 291 ~~~~~~~~~iA~~vp~~~~v~~lv---------Gs~~~~~l~fi~P~l~~~~~~~~~~------~~~~~~~~~~i~~~g~ 355 (375)
-..++.++++|..++.++-++... ||.+|.-+.++= |+.+-|... -..+|+ -|+++++|+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wL-wwi~~vlG~ 234 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWL-WWIFLVLGL 234 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHH-HHHHHHHHH
Confidence 345567788888888888777664 888887777775 333311111 122444 366778888
Q ss_pred HHHHHHHHH
Q 017226 356 IVSTFGLVG 364 (375)
Q Consensus 356 ~~~v~gt~~ 364 (375)
+...-|++.
T Consensus 235 ll~lr~~i~ 243 (262)
T KOG4812|consen 235 LLFLRGFIN 243 (262)
T ss_pred HHHHHHHHh
Confidence 888777754
No 83
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=41.63 E-value=3.4e+02 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=18.0
Q ss_pred ChHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 017226 306 YFNQVLGVIGGVIFWPLTIYFPVEMYFK 333 (375)
Q Consensus 306 ~~~~v~~lvGs~~~~~l~fi~P~l~~~~ 333 (375)
.++.+++ .+...+.+++|..+-+.
T Consensus 323 Gl~~Ii~----~~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 323 GLTQIIS----ISIPVLMIIYPLAIVLI 346 (378)
T ss_pred CHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 7777777 46678889999876655
No 84
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=35.81 E-value=1.5e+02 Score=31.58 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=35.0
Q ss_pred HhhhHHhhcCCchhHHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhh-ccccc--------cccCccCCcccc
Q 017226 148 ALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG-GFGYA--------AFGDNTPGNLLT 215 (375)
Q Consensus 148 ~~~~~~faf~~h~~~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg-~~GY~--------~fG~~v~~~il~ 215 (375)
-+|++.=|-.|...=-+-..++|+|| +..|.....+.+.+..+|+.-. +||-- -||+.+.+|..-
T Consensus 415 LvgIfFPsVTGImaGSNrSGDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVv 488 (1075)
T KOG2082|consen 415 LVGIFFPSVTGIMAGSNRSGDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVV 488 (1075)
T ss_pred HHHhhccccceeeecCCCCccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEE
Confidence 34444333333332223345788863 5567777777777888875433 23322 256666666443
No 85
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=32.67 E-value=1e+02 Score=25.81 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=35.4
Q ss_pred HHHhhhhhhhhhhhhhhHHHHH-h---c--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017226 312 GVIGGVIFWPLTIYFPVEMYFK-Q---M--NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 372 (375)
Q Consensus 312 ~lvGs~~~~~l~fi~P~l~~~~-~---~--~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~ 372 (375)
+++|+-.+....|..|.+.+.- . + +.++ . +-.+ -+++|+..+++|+..+-....++
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~-~-~pfl---Sf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR-Q-KPFL---SFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc-c-Ccch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778889999877753 1 1 1112 1 1122 25789999999988877766654
No 86
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.76 E-value=69 Score=20.85 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHHHHhhhhccccccccCc
Q 017226 179 MKKASTMSIITTTIFYLFCGGFGYAAFGDN 208 (375)
Q Consensus 179 ~~~~~~~s~~~~~~~y~~vg~~GY~~fG~~ 208 (375)
|..+...++.+.+++-.++|..-|-+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 444556666677777777777778888864
No 87
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=26.58 E-value=6.1e+02 Score=24.76 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHH--HHHHHHH
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI--FGAVQLI 84 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii--~~~v~lp 84 (375)
.++-.|++++-++++.++..-+...+...+...+-+.-.+.-++.++. .+...+.++ ...+.+.
T Consensus 63 g~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g--------------~p~~~~v~~~~~~~~~~~ 128 (390)
T TIGR01197 63 GLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH--------------IPLWGGVLITIVDVFLFL 128 (390)
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CcHHHHHHHHHHHHHHHH
Confidence 357889999999998777666555555555444444434334333321 112222222 2333344
Q ss_pred hhcCCCCCchhHHH
Q 017226 85 LSQAPDFHNIQSLS 98 (375)
Q Consensus 85 l~~~r~l~~L~~~S 98 (375)
+.+.++.+.+..+-
T Consensus 129 ~~~~~~yr~~E~~~ 142 (390)
T TIGR01197 129 FLDKPGLRILEAFV 142 (390)
T ss_pred HHHhCCceeHHHHH
Confidence 55567777777763
No 88
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.50 E-value=2.3e+02 Score=21.93 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017226 348 RVFSYVCFIVSTFGLVGS 365 (375)
Q Consensus 348 ~~i~~~g~~~~v~gt~~s 365 (375)
..++++|+++++...|.-
T Consensus 78 l~~lllGv~~G~~n~w~w 95 (100)
T TIGR02230 78 LTMLIVGVVIGCLNAWHW 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335677877777766543
No 89
>CHL00020 psbN photosystem II protein N
Probab=25.68 E-value=63 Score=20.72 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHhhhhccccccccCc
Q 017226 182 ASTMSIITTTIFYLFCGGFGYAAFGDN 208 (375)
Q Consensus 182 ~~~~s~~~~~~~y~~vg~~GY~~fG~~ 208 (375)
+...++.+.+++-.++|..-|-+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 344556666777777777778888864
No 90
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=24.18 E-value=1.7e+02 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=16.0
Q ss_pred HHhhhhhh-hhhhhhhhHHHHHhcCcchhhHHHHH
Q 017226 313 VIGGVIFW-PLTIYFPVEMYFKQMNIEAWTRKWVM 346 (375)
Q Consensus 313 lvGs~~~~-~l~fi~P~l~~~~~~~~~~~~~~~~~ 346 (375)
|.||..+. .++|.+|.+ ++ ||++....|..
T Consensus 75 lLGa~ac~a~~~fmfpVl---~l-kPrkFiLlwTm 105 (201)
T COG5102 75 LLGAGACSAFLYFMFPVL---RL-KPRKFILLWTM 105 (201)
T ss_pred HhhhHHHHHHHHHHHHHH---hc-CccceeeehhH
Confidence 34555554 667777753 22 45555555643
No 91
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=23.94 E-value=2.6e+02 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHh-cC-cchhhHHHHHHH
Q 017226 312 GVIGGVIFWPLTIYFPVEMYFKQ-MN-IEAWTRKWVMLR 348 (375)
Q Consensus 312 ~lvGs~~~~~l~fi~P~l~~~~~-~~-~~~~~~~~~~~~ 348 (375)
++.+...+..++++.|+.--.|. ++ .++..++|..-|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YW 40 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYW 40 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45667778899999999888885 32 223344565444
No 92
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.57 E-value=1.7e+02 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017226 349 VFSYVCFIVSTFGLVGSIQGIIS 371 (375)
Q Consensus 349 ~i~~~g~~~~v~gt~~si~~ii~ 371 (375)
+.|++|++++++|+..-|.-.++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 34667777777776655544443
No 93
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.85 E-value=1.4e+02 Score=31.39 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcc
Q 017226 164 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 200 (375)
Q Consensus 164 ~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~ 200 (375)
..-.|+|+| + +..|+....+...++++|.++.+.
T Consensus 315 nMSgELk~P--S-kSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 315 NMSGELKAP--S-KSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred CcCccccCc--c-ccCCccchHHHHHHHHHHHHHHHH
Confidence 345899987 4 678998999999999999887764
No 94
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=20.55 E-value=3.9e+02 Score=26.47 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=53.1
Q ss_pred HhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCCCCchh
Q 017226 16 NVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 95 (375)
Q Consensus 16 ~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~~L~ 95 (375)
..+|.++.+++.+++.++.|.+.+++.....++++.+.+. +. . .+.+-+++ +...++..+.+++.+.
T Consensus 301 ~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~---------~~--~-~~~~ri~~-i~~~~~G~~~~~~~vW 367 (416)
T PF01235_consen 301 TVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG---------KK--A-IWIYRILF-IAMVFIGAVIDLDLVW 367 (416)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------ce--E-EEeeeehh-hhhhhhhhcccchhHH
Confidence 3457789999999999999999999999999998888721 00 0 11111122 2223334445777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 017226 96 SLSVIAAVMSFAYSFI 111 (375)
Q Consensus 96 ~~S~~~~~~~~~~~~i 111 (375)
.++=+++.+.....++
T Consensus 368 ~~~Di~~~lmai~Nli 383 (416)
T PF01235_consen 368 DLADIANGLMAIPNLI 383 (416)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666655444433
No 95
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=20.42 E-value=2.3e+02 Score=24.82 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHhcCcchh--------hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017226 309 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAW--------TRK--WVMLRVFSYVCFIVSTFGLVGSIQGIIS 371 (375)
Q Consensus 309 ~v~~lvGs~~~~~l~fi~P~l~~~~~~~~~~~--------~~~--~~~~~~i~~~g~~~~v~gt~~si~~ii~ 371 (375)
...-..|++.+.=+..++|+...+..+|.+-- ..| -....+...+|+++.+.....|...+.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556778888888889999999998543110 111 1223445566777777777777766654
No 96
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.36 E-value=71 Score=20.53 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhhhhccccccccC
Q 017226 183 STMSIITTTIFYLFCGGFGYAAFGD 207 (375)
Q Consensus 183 ~~~s~~~~~~~y~~vg~~GY~~fG~ 207 (375)
...++.+.+++-.++|..-|-+||.
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCC
Confidence 3445556666666777777888885
Done!