Query 017226
Match_columns 375
No_of_seqs 120 out of 1102
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.8 9.6E-08 3.3E-12 93.2 15.6 182 7-207 70-252 (445)
2 4djk_A Probable glutamate/gamm 98.4 3.8E-06 1.3E-10 83.3 15.4 186 7-207 72-262 (511)
3 3gia_A Uncharacterized protein 98.3 5E-05 1.7E-09 73.8 20.5 176 7-206 69-248 (444)
4 2jln_A MHP1; hydantoin, transp 97.1 0.00092 3.2E-08 66.1 7.5 89 4-103 85-173 (501)
5 3dh4_A Sodium/glucose cotransp 95.7 0.41 1.4E-05 47.4 17.3 87 4-104 79-166 (530)
6 2xq2_A Sodium/glucose cotransp 94.2 1.6 5.5E-05 43.7 17.0 86 4-103 108-194 (593)
7 1afo_A Glycophorin A; integral 30.7 89 0.003 18.7 4.4 23 349-371 13-35 (40)
8 2wsw_A BCCT family betaine/car 13.8 1.9E+02 0.0065 28.0 4.9 98 29-127 411-509 (509)
9 4ain_A Glycine betaine transpo 13.5 2.6E+02 0.0089 27.3 5.8 67 35-103 418-487 (539)
10 3mp7_B Preprotein translocase 12.7 1.1E+02 0.0036 20.4 1.9 27 174-204 25-51 (61)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.78 E-value=9.6e-08 Score=93.16 Aligned_cols=182 Identities=8% Similarity=0.012 Sum_probs=102.1
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHHh
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLIL 85 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~v~lpl 85 (375)
.-++-+..++.+|++......+...+.......++....++.+...++.. ++ .+. .+.+... ..++-.
T Consensus 70 ~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~--~~~~~~~~~~~~~~ 138 (445)
T 3l1l_A 70 PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------KD--PWV--LTITCVVVLWIFVL 138 (445)
T ss_dssp TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-------GS--HHH--HHHHHHHHHHHHHH
T ss_pred CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-------cc--cHH--HHHHHHHHHHHHHH
Confidence 34667778999999988888888877776666666666655544332210 00 011 1111111 111222
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhHHHH
Q 017226 86 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 165 (375)
Q Consensus 86 ~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i 165 (375)
...+..|..+.++.+.....+...++.++..+... ++. .. .+++. ........++..++....|+|.|.......
T Consensus 139 in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 213 (445)
T 3l1l_A 139 LNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF--RGE-TY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVA 213 (445)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC--CCC-CC-CCC------------HHHHHHHHHHTTTTTTHHHHG
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Chh-hc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 23345556655554443322222221122222111 110 00 01110 011112345788899999999999999999
Q ss_pred HhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226 166 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 207 (375)
Q Consensus 166 ~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~ 207 (375)
.+|+||| +|+.+|++..+...+.++|....+......+.
T Consensus 214 ~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 214 AGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp GGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9999987 37899999999999999999888766555543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.42 E-value=3.8e-06 Score=83.32 Aligned_cols=186 Identities=10% Similarity=-0.066 Sum_probs=99.0
Q ss_pred CCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCc-hhhHHHH-HHHHH
Q 017226 7 SHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT-YYMLIFG-AVQLI 84 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~ii~~-~v~lp 84 (375)
.-..-.-+++.+|++......+...+.......++....++.+..++. .. + ...+.. .+.+..+ +.++-
T Consensus 72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p-~----~~~~~~~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WP-A----LNEDPITKTIAALIILWALA 142 (511)
T ss_dssp --CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CG-G----GTSCSSHHHHHHHHHHHHHH
T ss_pred CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-c----cccCcHHHHHHHHHHHHHHH
Confidence 345556777899998888888877777766666666666655433210 00 0 001111 1222111 12222
Q ss_pred hhcCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccccccccCchhHHHHHHHHHhhhHHhhcCCchh
Q 017226 85 LSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 161 (375)
Q Consensus 85 l~~~r~l~~L~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~ 161 (375)
+.-.+..|....+..+.....+. ..++.++..+.....+++. +.+..++ .+..+..+...++....|+|.|...
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~G~e~ 219 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF---FPDFSKVGTLVVFVAFILSYMGVEA 219 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC---CCCTTSTTTTTTHHHHHHHHTTGGG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc---CCCcccchHHHHHHHHHHHHhhHHH
Confidence 33345666666665543322111 0111111222111111100 0000111 0010111234456778999999999
Q ss_pred HHHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhccccccccC
Q 017226 162 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 207 (375)
Q Consensus 162 ~~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG~ 207 (375)
.....+|+|||+ |+.+|++..++..+.++|....+.-....++
T Consensus 220 ~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 220 SATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp GTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 999999999972 7899999999999999999888776666654
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.32 E-value=5e-05 Score=73.77 Aligned_cols=176 Identities=9% Similarity=-0.000 Sum_probs=98.1
Q ss_pred CCCHHHHHHHhhCcCc-chhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH---HHH
Q 017226 7 SHNLKKEIINVSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG---AVQ 82 (375)
Q Consensus 7 ~~sY~~l~~~~~G~~~-~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~---~v~ 82 (375)
....-+.+++.+|++. .-++.+...+.....+..+....++.+..+++. . ....+..+.+ .++
T Consensus 69 ~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~ 135 (444)
T 3gia_A 69 NAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----P---------INTFNIAITEIGIVAF 135 (444)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C---------CCHHHHHHHHHHHHHH
T ss_pred CCcHHHhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C---------CchHHHHHHHHHHHHH
Confidence 3456678889999862 112334444444555556666666666554421 0 0112211111 112
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhHHHHHHHHHhhhHHhhcCCchhH
Q 017226 83 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 162 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~ 162 (375)
+-....+..|..+.++.+.....+...++.++..+... ++.+ ..+ . ..+..+.+++.+++...|+|.|....
T Consensus 136 ~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~~--~-~~~~g~~~~~~~~~~~~~a~~G~e~~ 207 (444)
T 3gia_A 136 FTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VIP--D-LAPSAVSGMIFASAIFFLSYMGFGVI 207 (444)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TSC--C-CSHHHHHHHHHHHHHGGGGGTHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cCC--C-CCCcchHHHHHHHHHHHHHHHhHHHH
Confidence 22233345555555554443322222111122222221 1111 110 0 11234456788888899999999999
Q ss_pred HHHHhhhCCCCCccchHHHhhHHHHHHHHHHHhhhhcccccccc
Q 017226 163 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 206 (375)
Q Consensus 163 ~~i~~~m~~p~p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~fG 206 (375)
....+|+||| +|+.+|++..+...+.++|....+......+
T Consensus 208 ~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 208 TNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999987 3679999999999999999987766554444
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.07 E-value=0.00092 Score=66.14 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 83 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~l 83 (375)
|.+. +|.++.|..||++|..+..+...+.++|-........++.+..+++... +. .+...+.++++++.+
T Consensus 85 ~~Gl-~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~~ 154 (501)
T 2jln_A 85 RWGI-NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQV 154 (501)
T ss_dssp HHCC-CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHH
T ss_pred hcCC-ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHHH
Confidence 3444 5999999999999999999999999999999999999999988875421 10 012234555666666
Q ss_pred HhhcCCCCCchhHHHHHHHH
Q 017226 84 ILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 84 pl~~~r~l~~L~~~S~~~~~ 103 (375)
+..+ .-++.++++..++..
T Consensus 155 ~~~~-~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 155 VTTF-YGITFIRWMNVFASP 173 (501)
T ss_dssp HHHT-THHHHHHHHHHHHHH
T ss_pred HHHH-hCHHHHHHHHHHHHH
Confidence 7764 456777777766654
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.72 E-value=0.41 Score=47.35 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHH-HHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~-~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|..|.-++-||++.+.+..+...+ +.+.-+.+-+...+..++.++. ++...-+++.+++.
T Consensus 79 ~~~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~ 144 (530)
T 3dh4_A 79 EKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFA 144 (530)
T ss_dssp HTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHH
T ss_pred HcCCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence 45788999999999999888777665443 2222222223333333333321 22222344455566
Q ss_pred HHhhcCCCCCchhHHHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAAVM 104 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~~ 104 (375)
.--+..--++...++..+=.+.
T Consensus 145 ~~Yt~~GGl~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 145 LVYSIYGGLSAVVWTDVIQVFF 166 (530)
T ss_dssp HHTTC------CCSHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHH
Confidence 6777788888888887765543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.25 E-value=1.6 Score=43.69 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHhhCcCcchhHHHHHHH-HHhhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 017226 4 KSPSHNLKKEIINVSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 82 (375)
Q Consensus 4 ~~~~~sY~~l~~~~~G~~~~~~v~i~~~~-~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~ 82 (375)
|.+..|..|.-++=||++.+.+..+...+ +.+....+.+...+..++.++. ++...-+++.+++.
T Consensus 108 r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~ 173 (593)
T 2xq2_A 108 EKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFA 173 (593)
T ss_dssp HTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHH
Confidence 45788999999999998877666655443 2332223333334555555442 12222334455666
Q ss_pred HHhhcCCCCCchhHHHHHHHH
Q 017226 83 LILSQAPDFHNIQSLSVIAAV 103 (375)
Q Consensus 83 lpl~~~r~l~~L~~~S~~~~~ 103 (375)
.-.+..--++...++-.+=.+
T Consensus 174 ~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 174 LVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHTTC---CCHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHH
Confidence 677788888888877765544
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=30.67 E-value=89 Score=18.68 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017226 349 VFSYVCFIVSTFGLVGSIQGIIS 371 (375)
Q Consensus 349 ~i~~~g~~~~v~gt~~si~~ii~ 371 (375)
.++++|+.+++.|+.-.|.--+.
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887766654443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=13.83 E-value=1.9e+02 Score=28.04 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHhhcccc-CCCCccccccCchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 017226 29 FVHVGLYGTAIAYTVTSAISMRAIQKSNCYHR-EGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFA 107 (375)
Q Consensus 29 ~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~l~~L~~~S~~~~~~~~~ 107 (375)
.......-.++.|.+..+|+...+....+.+. ++.++|..+.+-.|.++.+.+..-|.+...++.|+-.+.++.+ =+.
T Consensus 411 i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~al-Pf~ 489 (509)
T 2wsw_A 411 ATMWGFFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGC-PLF 489 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hHH
Q ss_pred HHHHhhhheeeeeecCCccc
Q 017226 108 YSFIGFGLGVAKVIGNGFVM 127 (375)
Q Consensus 108 ~~~i~~~~~i~~~~~~~~~~ 127 (375)
.+.+.+..+..|....+.+|
T Consensus 490 ~v~l~~~~sl~k~l~~d~~~ 509 (509)
T 2wsw_A 490 FVNIMVTLSFIKDAKVHWKD 509 (509)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhcCC
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=13.49 E-value=2.6e+02 Score=27.27 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=41.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhhcCCC---CCchhHHHHHHHH
Q 017226 35 YGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD---FHNIQSLSVIAAV 103 (375)
Q Consensus 35 ~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~lpl~~~r~---l~~L~~~S~~~~~ 103 (375)
.-.++.|.+..+|+...++..++.+ |.++|..+.+-.|.++.+.+..-|.+... ++.|+-.+.++.+
T Consensus 418 iili~~FfvTSaDS~s~vl~~~ss~--g~~~p~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt~~ii~al 487 (539)
T 4ain_A 418 MILLGTFFITSADSASTVMGTMSQH--GQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAAT 487 (539)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHTT--TCSSCCHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHcC--CCCCCCcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHh
Confidence 3456678889999999988875532 22233234444566666665555555554 8888888776644
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.71 E-value=1.1e+02 Score=20.40 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=16.1
Q ss_pred CccchHHHhhHHHHHHHHHHHhhhhcccccc
Q 017226 174 PANQTMKKASTMSIITTTIFYLFCGGFGYAA 204 (375)
Q Consensus 174 p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~ 204 (375)
|+++.|.++...+ .+-..++|+.||..
T Consensus 25 Pd~~Ef~~iak~~----~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 25 PNWATYKRAAKIT----GLGIILIGLIGMLI 51 (61)
T ss_dssp CCTTHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5778888865543 23344556666653
Done!