Query 017226
Match_columns 375
No_of_seqs 120 out of 1102
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 11:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017226.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017226hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 13.0 40 0.0029 20.5 1.5 28 174-205 18-45 (56)
2 d1qnta1 a.4.2.1 (A:92-176) O6- 11.4 75 0.0054 20.9 2.7 25 3-27 16-40 (85)
3 d1sfea1 a.4.2.1 (A:93-176) Ada 11.2 76 0.0056 20.8 2.7 24 3-26 16-39 (84)
4 d1mgta1 a.4.2.1 (A:89-169) O6- 6.7 83 0.0061 20.5 1.3 15 3-17 17-31 (81)
5 d1q90r_ f.23.12.1 (R:) ISP sub 5.3 1.9E+02 0.014 15.8 2.0 14 315-328 19-32 (39)
6 d1ppjc1 f.32.1.1 (C:261-379) M 4.8 5E+02 0.036 17.6 4.9 23 303-328 23-46 (119)
7 d1jb0l_ f.31.1.1 (L:) Photosys 3.4 4.7E+02 0.034 18.7 3.6 26 145-170 122-147 (151)
8 d1ciya3 f.1.3.1 (A:33-255) del 2.9 4.8E+02 0.035 19.7 3.5 26 292-317 7-32 (223)
9 d1v54d_ f.23.1.1 (D:) Mitochon 2.4 6.4E+02 0.047 17.8 3.3 24 167-193 66-89 (144)
10 d3cx5c1 f.32.1.1 (C:262-385) M 2.4 8.9E+02 0.065 16.2 5.1 22 303-327 23-45 (124)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.03 E-value=40 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=16.9
Q ss_pred CccchHHHhhHHHHHHHHHHHhhhhccccccc
Q 017226 174 PANQTMKKASTMSIITTTIFYLFCGGFGYAAF 205 (375)
Q Consensus 174 p~~~~~~~~~~~s~~~~~~~y~~vg~~GY~~f 205 (375)
|+++.|.++... +.+-..++|+.||..+
T Consensus 18 P~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 18 PTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 577888775433 3334456677777654
No 2
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.36 E-value=75 Score=20.88 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhHH
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWACS 27 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v~ 27 (375)
|.....||.|+|+.+--++..+.+.
T Consensus 16 P~G~v~TYg~iA~~~g~p~aaRaVg 40 (85)
T d1qnta1 16 KFGEVISYQQLAALAGNPKAARAVG 40 (85)
T ss_dssp CTTCCEEHHHHHHHTTCTTCHHHHH
T ss_pred CCCCcccHHHHHHHcCCcchHHHHH
Confidence 4556789999998865555544443
No 3
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=76 Score=20.79 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHhhCcCcchhH
Q 017226 3 PKSPSHNLKKEIINVSGKTNAWAC 26 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~~G~~~~~~v 26 (375)
|.-+..||.|+|+.+--++..+.+
T Consensus 16 p~G~v~TYg~iA~~~g~~~a~RaV 39 (84)
T d1sfea1 16 PCGETVSYQQLANAIGKPKAVRAV 39 (84)
T ss_dssp CTTCCEEHHHHHHHTTCTTCHHHH
T ss_pred CCCCeeeHHHHHHHhCCcccHHHH
Confidence 445678999999877555544443
No 4
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=6.75 E-value=83 Score=20.46 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHHHHh
Q 017226 3 PKSPSHNLKKEIINV 17 (375)
Q Consensus 3 ~~~~~~sY~~l~~~~ 17 (375)
|..+..||.|+|+.+
T Consensus 17 P~G~v~TYg~iA~~~ 31 (81)
T d1mgta1 17 KRGSVITYGDLAKAL 31 (81)
T ss_dssp CTTCCEEHHHHHHHT
T ss_pred CCCCeEeHHHHHHHc
Confidence 445678999999855
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.26 E-value=1.9e+02 Score=15.85 Aligned_cols=14 Identities=21% Similarity=0.104 Sum_probs=6.1
Q ss_pred hhhhhhhhhhhhhh
Q 017226 315 GGVIFWPLTIYFPV 328 (375)
Q Consensus 315 Gs~~~~~l~fi~P~ 328 (375)
|+++........|-
T Consensus 19 G~~~~~~~g~l~py 32 (39)
T d1q90r_ 19 GGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hccchhhhhhccce
Confidence 44444444444443
No 6
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.81 E-value=5e+02 Score=17.64 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=13.8
Q ss_pred hccC-hHHHHHHHhhhhhhhhhhhhhh
Q 017226 303 SFPY-FNQVLGVIGGVIFWPLTIYFPV 328 (375)
Q Consensus 303 ~vp~-~~~v~~lvGs~~~~~l~fi~P~ 328 (375)
.+|| ++-++.+++|+. +-+.+|-
T Consensus 23 sipnK~gGvl~m~~si~---il~~lP~ 46 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSIL---ILALIPL 46 (119)
T ss_dssp TCSSHHHHHHHHHHHHH---GGGTHHH
T ss_pred cCCchhHHHHHHHHHHH---HHHHHHH
Confidence 4776 777777776654 3444443
No 7
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=3.43 E-value=4.7e+02 Score=18.71 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHHHhhhHHhhcCCchhHHHHHhhhC
Q 017226 145 VAQALGDIAFAYPYSLILIEIQDTLK 170 (375)
Q Consensus 145 ~~~~~~~~~faf~~h~~~~~i~~~m~ 170 (375)
++.+.|-..|||..-.+..-+..-|+
T Consensus 122 ~~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 122 FVGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhccccHHHHHHHHHcchHHHHHHHH
Confidence 45688999999988888776665554
No 8
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=2.87 E-value=4.8e+02 Score=19.71 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHhhh
Q 017226 292 VYVVSVTAIAMSFPYFNQVLGVIGGV 317 (375)
Q Consensus 292 ~~~~~~~~iA~~vp~~~~v~~lvGs~ 317 (375)
.+-+..++++.++|..+.+++++|-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 34466777888899999888766544
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.38 E-value=6.4e+02 Score=17.81 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=13.9
Q ss_pred hhhCCCCCccchHHHhhHHHHHHHHHH
Q 017226 167 DTLKSPPPANQTMKKASTMSIITTTIF 193 (375)
Q Consensus 167 ~~m~~p~p~~~~~~~~~~~s~~~~~~~ 193 (375)
.||+.|+ ..++.++..+++.+.+-
T Consensus 66 ae~~~p~---gewK~v~g~~~~~i~~s 89 (144)
T d1v54d_ 66 AEMNRST---NEWKTVVGAAMFFIGFT 89 (144)
T ss_dssp HHHTCCC---SHHHHHHHHHHHHHHHH
T ss_pred ccccCCC---CchhHHHHHHHHHHHHH
Confidence 7888763 45666665554444333
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.37 E-value=8.9e+02 Score=16.24 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=12.7
Q ss_pred hccC-hHHHHHHHhhhhhhhhhhhhh
Q 017226 303 SFPY-FNQVLGVIGGVIFWPLTIYFP 327 (375)
Q Consensus 303 ~vp~-~~~v~~lvGs~~~~~l~fi~P 327 (375)
.+|+ ++-++.+++|+. +-+.+|
T Consensus 23 siP~k~~Gvl~~~~si~---il~~lP 45 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAIL---VLLVLP 45 (124)
T ss_dssp TSSSHHHHHHHHHHHHH---GGGGHH
T ss_pred cCCcchhhhHHHHHHHH---HHHHHH
Confidence 4676 666666666554 334445
Done!