Query 017229
Match_columns 375
No_of_seqs 130 out of 219
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2909 Vacuolar H+-ATPase V1 100.0 3E-131 6E-136 953.3 35.1 373 2-375 1-377 (381)
2 PF03223 V-ATPase_C: V-ATPase 100.0 9E-128 2E-132 959.9 34.2 363 5-368 1-371 (371)
3 COG5127 Vacuolar H+-ATPase V1 100.0 3.4E-96 7E-101 699.5 30.0 368 3-374 4-383 (383)
4 PRK05771 V-type ATP synthase s 97.4 0.037 7.9E-07 60.1 22.6 213 117-339 83-299 (646)
5 PF01496 V_ATPase_I: V-type AT 95.6 0.099 2.2E-06 57.8 11.6 164 177-340 137-315 (759)
6 COG4996 Predicted phosphatase 79.8 6.2 0.00013 35.3 6.4 78 216-340 32-109 (164)
7 PF06783 UPF0239: Uncharacteri 64.7 2 4.3E-05 35.2 -0.2 11 301-311 16-26 (85)
8 PF01785 Closter_coat: Closter 43.0 23 0.00049 32.7 3.0 44 274-318 95-139 (188)
9 PF01920 Prefoldin_2: Prefoldi 39.3 2E+02 0.0043 23.0 9.3 85 54-154 9-96 (106)
10 PRK15364 pathogenicity island 35.1 2.9E+02 0.0063 26.0 8.7 60 90-156 111-182 (196)
11 cd07646 I-BAR_IMD_IRSp53 Inver 31.5 4.5E+02 0.0098 25.5 9.7 38 123-160 110-147 (232)
12 COG5163 NOP7 Protein required 29.2 46 0.001 34.8 2.9 30 285-316 220-249 (591)
13 COG1298 FlhA Flagellar biosynt 27.2 66 0.0014 35.7 3.8 135 115-270 505-642 (696)
14 KOG3725 SH3 domain protein SH3 26.4 1.7E+02 0.0036 29.1 6.0 61 246-309 186-247 (375)
15 PF12826 HHH_2: Helix-hairpin- 26.3 58 0.0012 24.7 2.3 35 45-79 22-57 (64)
16 TIGR03422 mito_frataxin fratax 26.3 1.6E+02 0.0035 24.5 5.2 68 63-130 3-96 (97)
17 cd07645 I-BAR_IMD_BAIAP2L1 Inv 26.0 6.1E+02 0.013 24.5 9.9 37 124-160 109-145 (226)
18 PF08285 DPM3: Dolichol-phosph 25.4 75 0.0016 26.3 3.0 32 242-273 55-86 (91)
19 KOG3973 Uncharacterized conser 24.8 2E+02 0.0043 29.8 6.3 128 18-168 165-293 (465)
20 cd00890 Prefoldin Prefoldin is 24.5 2.1E+02 0.0047 23.8 5.8 37 117-153 91-127 (129)
21 PRK03947 prefoldin subunit alp 24.1 2.5E+02 0.0054 24.2 6.2 48 107-154 81-128 (140)
22 smart00502 BBC B-Box C-termina 24.0 3.9E+02 0.0084 21.5 7.6 61 257-317 52-112 (127)
23 PF10367 Vps39_2: Vacuolar sor 23.7 3.2E+02 0.007 21.7 6.5 77 112-191 20-99 (109)
24 COG4010 Uncharacterized protei 22.4 1.9E+02 0.0041 26.3 5.1 59 247-308 37-95 (170)
25 cd00632 Prefoldin_beta Prefold 22.2 2.7E+02 0.0059 22.9 5.9 42 114-155 57-98 (105)
26 PF05278 PEARLI-4: Arabidopsis 22.0 1.1E+02 0.0023 30.4 3.8 130 18-154 97-234 (269)
27 PF15513 DUF4651: Domain of un 21.6 85 0.0018 24.3 2.4 44 325-369 2-52 (62)
28 cd00632 Prefoldin_beta Prefold 21.1 3.4E+02 0.0073 22.3 6.2 40 116-155 66-105 (105)
29 PF05529 Bap31: B-cell recepto 21.0 6.3E+02 0.014 22.9 8.8 38 118-155 152-189 (192)
30 PRK15356 type III secretion sy 20.9 50 0.0011 26.5 1.1 24 289-312 19-42 (75)
31 PF06657 Cep57_MT_bd: Centroso 20.9 98 0.0021 24.8 2.8 42 114-155 11-52 (79)
32 PF05667 DUF812: Protein of un 20.5 84 0.0018 34.4 3.0 50 122-171 449-498 (594)
No 1
>KOG2909 consensus Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=2.8e-131 Score=953.29 Aligned_cols=373 Identities=46% Similarity=0.787 Sum_probs=360.1
Q ss_pred CceEEEEeecCCCC-hHHHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHh
Q 017229 2 ASRYWVVSLPVQNS-AASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEEL 80 (375)
Q Consensus 2 ~~~~~LvslP~~~~-~~~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l 80 (375)
|++|||||+|++++ +.++|+.+...+++.+..+.+++|+||+|||||||+||++||||+|+|++||++++||.+++.+.
T Consensus 1 Ms~fwliSlP~~~~~~~~~~d~i~~~~sk~s~~~~vs~F~IP~fkvgsLD~Lv~~se~L~Kld~~~e~~i~ki~~~~~~~ 80 (381)
T KOG2909|consen 1 MSEFWLISLPGEKTGNQQTWDRINDLTSKRSNLSTVSKFNIPDFKVGSLDVLVGLSEELGKLDTFVEGLIKKIAGYLKEV 80 (381)
T ss_pred CcceEEEeCCcCCcccccHHHHHHHHHhccccccccccccCCCcccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56999999999766 78999999999988877899999999999999999999999999999999999999999999888
Q ss_pred hcc-ccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 017229 81 ERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSG 159 (375)
Q Consensus 81 ~~~-~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~G 159 (375)
+++ ++++.+++.+||+|+++|+++|+||++|||.++||++++++|+++++|||+|+|+|+++||++|+||++++||++|
T Consensus 81 le~~s~~~~~~l~~n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~~G 160 (381)
T KOG2909|consen 81 LEDSSGKVGENLMANGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKKTG 160 (381)
T ss_pred HhhcccchhhceeeCCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccC
Confidence 875 7778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHH
Q 017229 160 SLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRI 238 (375)
Q Consensus 160 nL~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~ 238 (375)
||++|||++||+||||| |||||+|++|||||++++||+++||||++||||||+++|.||+||.||+||||||.+|+|++
T Consensus 161 sL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~V~lFkk~~edFr~ 240 (381)
T KOG2909|consen 161 SLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFTVTLFKKVAEDFRT 240 (381)
T ss_pred ChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEEEEEeehhHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEE
Q 017229 239 AAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLAC 318 (375)
Q Consensus 239 ~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~ 318 (375)
+|||+||+||||.|++++++++++|++++++++++|+++|+|||++||||+|++|||||||||||||||||||||+|+++
T Consensus 241 ~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~~~Llr~~kv~fsEvF~~wiHiKaLRvfVESVlRYGLP~~F~a~ 320 (381)
T KOG2909|consen 241 KAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMRGPLLRWLKVNFSEVFIAWIHIKALRVFVESVLRYGLPPNFQAV 320 (381)
T ss_pred HHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHhcCCCCCCCcC-CCCCCccCCCCCCCcccceEEEEEecC
Q 017229 319 VLAPSVKGEKKVRSILEELCGNANSTFWKS-EDDGGMMAGLGGDADSHPYVSFTINLV 375 (375)
Q Consensus 319 li~p~~k~~kkl~~~L~~~f~~l~~~~~~~-~~~~~~~~g~~~~~ey~pyV~~~i~~~ 375 (375)
+++|++|+.+|+|.+|.++|+|||+++++. |.+.+ |||+.+++||+|||+|+|++.
T Consensus 321 ~~~p~kKs~~k~r~iL~~~~~~ld~~~~~~~da~~~-~~glnld~ey~PfV~~~I~~~ 377 (381)
T KOG2909|consen 321 LLQPNKKSEKKLRSILISLYGHLDSNAAAVYDASVD-IPGLNLDEEYFPFVFFTINLY 377 (381)
T ss_pred eecCCchhHHHHHHHHHHHhccccccchhhcccccc-CCCCCCCCceeeEEEEEeccc
Confidence 999999999999999999999999998743 33345 999988899999999999873
No 2
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=100.00 E-value=8.8e-128 Score=959.88 Aligned_cols=363 Identities=50% Similarity=0.833 Sum_probs=287.9
Q ss_pred EEEEeecCCCChHHH-HHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhcc
Q 017229 5 YWVVSLPVQNSAASV-WNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERV 83 (375)
Q Consensus 5 ~~LvslP~~~~~~~~-~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~ 83 (375)
|||||+|+++++++. |+.|+..++..+..+.+++|+||+||+||||+||.|||||+|+|++||++++||++++++++++
T Consensus 1 ywLvs~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~IP~lKvgTLDsLv~lsDeL~KlD~~~e~~~~Ki~~~~~~l~~~ 80 (371)
T PF03223_consen 1 YWLVSLPNEKSSQQSIWEKLQLVTSKSNNLSTVSKFNIPDLKVGTLDSLVQLSDELAKLDSFVESVVRKIERQLRDLLEG 80 (371)
T ss_dssp EEEEEEETT---TTS--HHHHHHHTGGGGTSEEEE------B-S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS
T ss_pred CEEEECCCCCCCcchHHHHHHHHhhccCCCCceeeecCCcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999997666554 9999998765566788999999999999999999999999999999999999999999999875
Q ss_pred -ccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccc
Q 017229 84 -SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLA 162 (375)
Q Consensus 84 -~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~ 162 (375)
.++..+++.+||+|+++||++|+||++|||+++||+||+++|++++++||+|+|+|+++||++|++|++++||++|||+
T Consensus 81 ~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKy~~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~ 160 (371)
T PF03223_consen 81 DKDKLQENLLVNGVSLEQYLTRFQWDDAKYPTRRPLKELVDIISKEVSQIDNDLKSKSSAYNNAKSNLQALERKQTGNLS 160 (371)
T ss_dssp S-SSS--S--BTTB-HHHHHHT----TTTS-TTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-TT
T ss_pred cccceeeEEEECCCcHHHHHHHheehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 4556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHHHHH
Q 017229 163 VRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAR 241 (375)
Q Consensus 163 ~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~r 241 (375)
+|||++||+|+||| |||||||++|||||++++||+++||||++|||||||++|++|+||+||+||||||+++||+++||
T Consensus 161 ~rsL~~iV~~ed~v~dSEyL~Tl~VvVPk~~~~ewl~~YEtL~~~VVPrSs~~i~eD~ey~L~~VtlFkk~~~eF~~~~r 240 (371)
T PF03223_consen 161 VRSLSDIVKPEDFVLDSEYLTTLLVVVPKNSVKEWLKSYETLTDMVVPRSSKKIAEDSEYVLFSVTLFKKVVDEFKNKCR 240 (371)
T ss_dssp TS--TTT--GGGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTTB-TT--EEEEE-SSEEEEEEEEEGGGHHHHHHHHH
T ss_pred cccHHhhCCHHhcccccccceEEEEEechhhHHHHHHHHhccCCccCCChHHhhhcCCCeEEEEEEEEeccHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEEEEe
Q 017229 242 EKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLA 321 (375)
Q Consensus 242 e~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~li~ 321 (375)
|+||+||||+|+|+.++++++|+++++++++++|+.|+|||++||||+|+||||||||||||||||||||||+|++++|+
T Consensus 241 e~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~F~a~ll~ 320 (371)
T PF03223_consen 241 EKKFIVRDFKYDEEESEEEKEEREKLETEEKKQWGELLRWCKTNFSEAFSAWIHLKALRVFVESVLRYGLPPNFQAFLLK 320 (371)
T ss_dssp HTT-EEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS--EEEEEEE
T ss_pred HcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCCCcCCC----CCCccCCC-CCCCcccceE
Q 017229 322 PSVKGEKKVRSILEELCGNANSTFWKSED----DGGMMAGL-GGDADSHPYV 368 (375)
Q Consensus 322 p~~k~~kkl~~~L~~~f~~l~~~~~~~~~----~~~~~~g~-~~~~ey~pyV 368 (375)
|++|++||+|++|.++|+||++++++.+. ..+ .||+ .+++||||||
T Consensus 321 p~~k~~kKl~~~L~~~f~~l~~~~~~~~~~~~~~~~-~~~l~~~~~ey~pyV 371 (371)
T PF03223_consen 321 PNKKKEKKLRKELNKLFGYLGSNAFSYDKEGEINVD-DPGLSLGDQEYYPYV 371 (371)
T ss_dssp E-TT-HHHHHHHHHHHHGGGG-TT-------------------------SSE
T ss_pred eCCchHHHHHHHHHHHhccccccccccccccccccC-CccccCCCCccCCCC
Confidence 99999999999999999999998775432 123 6787 4689999998
No 3
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=3.4e-96 Score=699.47 Aligned_cols=368 Identities=28% Similarity=0.429 Sum_probs=336.4
Q ss_pred ceEEEEeecCC--CChHHHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHh
Q 017229 3 SRYWVVSLPVQ--NSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEEL 80 (375)
Q Consensus 3 ~~~~LvslP~~--~~~~~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l 80 (375)
+.|||||+|.. |+..+ ++....+-++. +.+++|.||.||+|+||.||.+|++|+|+|.+|++.+.||.++++.+
T Consensus 4 sdFilvslP~~~~Gs~~d--~d~~~~l~ggr--stvs~f~~P~Fk~~SLd~lI~qsE~L~k~d~qc~~aIsKi~~i~~g~ 79 (383)
T COG5127 4 SDFILVSLPVEEDGSRPD--EDQIWDLYGGR--STVSRFLLPSFKGVSLDGLINQSERLGKLDKQCEGAISKILKIFMGY 79 (383)
T ss_pred cceEEEeccccccCCCCc--HHHHHHHhcCc--cccccccCCCccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 68999999983 33322 45555454444 66899999999999999999999999999999999999999999999
Q ss_pred hccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 017229 81 ERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGS 160 (375)
Q Consensus 81 ~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~Gn 160 (375)
+.+.......+-++..+.++|+..|+||+.+|..+++|++++.+|..|..+|++|+|+|+++|+.||++++++|||++||
T Consensus 80 ~~ss~gd~~~~~iv~~~~pEy~~~f~W~~~~F~~nKsI~~~i~li~~E~~~~~~d~r~~~~~f~~Ak~~~~~~qrk~~G~ 159 (383)
T COG5127 80 CRSSNGDRVGKGIVYGSTPEYGDFFEWDRQSFVTNKSIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRGS 159 (383)
T ss_pred hccccccccccccccCCchhhhhhhhcchhheeccccHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccCC
Confidence 87544344444455555569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHHH
Q 017229 161 LAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIA 239 (375)
Q Consensus 161 L~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~ 239 (375)
|++|||++||++|||| +|||||+++|||||+.+++|+++||||++.|+|+|+++|.+|+||.||+|++|||.+++|+++
T Consensus 160 Ls~~sL~~IV~~eDvv~gse~Lt~v~vaVpk~l~~~F~~syeTls~~V~p~sa~kv~~D~EyvLf~V~vfkk~~~~f~t~ 239 (383)
T COG5127 160 LSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEEDFRTM 239 (383)
T ss_pred hhhhhHhhhcCchhhccchhhheeeEEEehhhhhHHHHhhhhhcCcccChhHHhhhcCccceEEEEEEEEecChHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEEE
Q 017229 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACV 319 (375)
Q Consensus 240 ~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~l 319 (375)
|||.||+||||+|+++..++++.|+++++..++++...|+|+..++|+|+|+.|||||+|||||||||||||||+|..++
T Consensus 240 are~kf~vref~~~~~l~e~~~~e~d~Aa~ke~~m~~~L~r~a~va~~evF~~wiHiK~LrvyVESvlRYGLPp~f~~~I 319 (383)
T COG5127 240 AREEKFMVREFDKNMVLSEEMIAERDRAAEKESAMEKILMRFAHVALTEVFRIWIHIKLLRVYVESVLRYGLPPEFMFFI 319 (383)
T ss_pred HHhcCcchhhcchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHHHHHHHHhcCCCCCCCcCC-----C-C---CCccCCCCCCCcccceEEEEEec
Q 017229 320 LAPSVKGEKKVRSILEELCGNANSTFWKSE-----D-D---GGMMAGLGGDADSHPYVSFTINL 374 (375)
Q Consensus 320 i~p~~k~~kkl~~~L~~~f~~l~~~~~~~~-----~-~---~~~~~g~~~~~ey~pyV~~~i~~ 374 (375)
++|.+|++.|++..|.+.|++|++|.+..+ + . .++++.+..|+||.|||+|-+|.
T Consensus 320 ~~~~~KsesKvk~~li~~~~~l~~n~i~~~k~g~~n~~~~~l~~~a~l~~d~EyePFVlfvfNy 383 (383)
T COG5127 320 TRGEKKSESKVKAQLIAIAKNLPSNRIVYEKEGDNNDEGEILFAFAELSTDGEYEPFVLFVFNY 383 (383)
T ss_pred eccCccchHHHHHHHHHHHhhcCCCcchhccccCCcccchHHHHHHhccccccccceEEEEecC
Confidence 999999999999999999999999988432 1 1 22355565688999999997763
No 4
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=97.37 E-value=0.037 Score=60.08 Aligned_cols=213 Identities=16% Similarity=0.251 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccccccCccC-CCCCCccccCcceEEEEEecCCChHH
Q 017229 117 PLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNL-VKPEDIITSEHLVTLLAVVPKYSQKD 195 (375)
Q Consensus 117 ~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~di-V~~edfvdsEyLtTllV~VPk~~~~~ 195 (375)
+..++.+....+..+++++++...+..++++++++.++.... .++.+.++ +..+++-+++|+...+-.||+...+.
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~---~l~~~~~ld~~l~~~~~~~~~~~~~G~i~~~~~~~ 159 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE---RLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEE 159 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhcCCCCHHHhCCCCcEEEEEEEecchhhhh
Confidence 455555556666666666666666666666666666554322 12222222 11122236788888899999877654
Q ss_pred HHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeccCc---CCHHHHHHHHHHHHHHHHHHH
Q 017229 196 WLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFE---YSSEAQESRNQELEKLVHDQE 272 (375)
Q Consensus 196 w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~re~kf~vRdF~---y~ee~~~~~~~e~~~l~~~~~ 272 (375)
..++....++ ..+.++.++.-+-|+.-+...++....|+..+|..-++- --.+.+++.++++++++++.+
T Consensus 160 --~~~~~~~~~~-----~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~ 232 (646)
T PRK05771 160 --LKLESDVENV-----EYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERE 232 (646)
T ss_pred --HHhhccCceE-----EEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222 245577777766666667888999999999887655442 246777889999999999999
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEEEEecCCCChHHHHHHHHHHhc
Q 017229 273 SLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCG 339 (375)
Q Consensus 273 ~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~li~p~~k~~kkl~~~L~~~f~ 339 (375)
+....+.++++..-..+...+-.+...+-..+...+.+-=-++..+-=..+.+...++++.|.+..+
T Consensus 233 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~ 299 (646)
T PRK05771 233 SLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG 299 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHHHHHhcC
Confidence 9999999977655544444666666666666666665553333333333567889999999999775
No 5
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=95.61 E-value=0.099 Score=57.81 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=95.2
Q ss_pred ccCcceE--EEEEecCCChHHHHHHhcccCCc-cccCCc--ccccccCC----eeEEEE-EEecccHHHHHHHHHHcCCe
Q 017229 177 TSEHLVT--LLAVVPKYSQKDWLASYETLTSY-VVPRSS--KLLYEDNE----YALYTV-TLFGRVADNFRIAAREKGFQ 246 (375)
Q Consensus 177 dsEyLtT--llV~VPk~~~~~w~~~YEtL~~~-VVPrSs--~~i~eD~e----~~L~~V-~lFkk~~~eF~~~~re~kf~ 246 (375)
+++++.. ++=+||+.....|.+..++.+.- +.-+.+ ..+..|.. -..|-| ..=++..++....|+..+|.
T Consensus 137 ~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~ 216 (759)
T PF01496_consen 137 SSKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFE 216 (759)
T ss_dssp ---------------HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--
T ss_pred cccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCce
Confidence 4455544 67789999999999998876654 222221 22333332 233333 33477889999999999997
Q ss_pred eccCcCC----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCC-CceEEEEe
Q 017229 247 IRDFEYS----SEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPP-SFLACVLA 321 (375)
Q Consensus 247 vRdF~y~----ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~-~F~~~li~ 321 (375)
.=++..+ .+.+++.++++++++++.++....+.++++..-.++...+..+...+---+..-+.+--. ++..+--.
T Consensus 217 ~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~GW 296 (759)
T PF01496_consen 217 RYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTETNVFILEGW 296 (759)
T ss_dssp B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SEEEEEE
T ss_pred ecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEEEe
Confidence 7655332 366777888999999999999999998888777777666677776666566666666555 45544455
Q ss_pred cCCCChHHHHHHHHHHhcC
Q 017229 322 PSVKGEKKVRSILEELCGN 340 (375)
Q Consensus 322 p~~k~~kkl~~~L~~~f~~ 340 (375)
.+.+..+++++.|.+....
T Consensus 297 vP~~~~~~l~~~l~~~~~~ 315 (759)
T PF01496_consen 297 VPEKDVEELKKALEEATDG 315 (759)
T ss_dssp E-TTTHHHHHHT--SS-EE
T ss_pred ccHHHHHHHHHHHHhhccc
Confidence 6778899999999887654
No 6
>COG4996 Predicted phosphatase [General function prediction only]
Probab=79.83 E-value=6.2 Score=35.28 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=59.4
Q ss_pred cccCCeeEEEEEEecccHHHHHHHHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHH
Q 017229 216 YEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMH 295 (375)
Q Consensus 216 ~eD~e~~L~~V~lFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiH 295 (375)
.+|+.-. -|++|+ .+.+|..-||..|+++--|.++-+..+
T Consensus 32 i~Ds~G~--ev~L~~-~v~~~l~warnsG~i~~~~sWN~~~kA------------------------------------- 71 (164)
T COG4996 32 IEDSKGR--EVHLFP-DVKETLKWARNSGYILGLASWNFEDKA------------------------------------- 71 (164)
T ss_pred eecCCCe--EEEEcH-HHHHHHHHHHhCCcEEEEeecCchHHH-------------------------------------
Confidence 3666432 356665 777899999999999999999976633
Q ss_pred HHHHhhhhhhhhhccCCCCceEEEEecCCCChHHHHHHHHHHhcC
Q 017229 296 FCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGN 340 (375)
Q Consensus 296 iKalRvFVESVLRYGLP~~F~~~li~p~~k~~kkl~~~L~~~f~~ 340 (375)
+||||+| |+-.=|-..+++|.|.+-+-|-+.|..+-..
T Consensus 72 ~~aLral-------~~~~yFhy~ViePhP~K~~ML~~llr~i~~e 109 (164)
T COG4996 72 IKALRAL-------DLLQYFHYIVIEPHPYKFLMLSQLLREINTE 109 (164)
T ss_pred HHHHHHh-------chhhhEEEEEecCCChhHHHHHHHHHHHHHh
Confidence 6788876 6667799999999998877777766665543
No 7
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=64.66 E-value=2 Score=35.16 Aligned_cols=11 Identities=64% Similarity=1.183 Sum_probs=9.9
Q ss_pred hhhhhhhhccC
Q 017229 301 VFAESILRYGL 311 (375)
Q Consensus 301 vFVESVLRYGL 311 (375)
.|.|.||||||
T Consensus 16 t~~e~llRYGL 26 (85)
T PF06783_consen 16 TFFENLLRYGL 26 (85)
T ss_pred hHHHHHHHHHH
Confidence 47899999999
No 8
>PF01785 Closter_coat: Closterovirus coat protein; InterPro: IPR002679 This family consist of coat proteins from closterovirus, which belong to the Closteroviridae, which have a positive strand ssRNA genome with no DNA stage during replication. The viral coat protein encapsulates and protects the viral genome. Both the large cp1 and smaller cp2 coat protein originate from the same primary transcript []. Members of the Closterovirus include Beet yellows virus (BYV) (Sugar beet yellows virus) and Grapevine leafroll-associated virus 7.; GO: 0044423 virion part
Probab=42.95 E-value=23 Score=32.69 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHHh-hhhhhhhhccCCCCceEE
Q 017229 274 LRSSLLQWCYTSYGEVFSSWMHFCAVR-VFAESILRYGLPPSFLAC 318 (375)
Q Consensus 274 ~~~~L~r~~~~~fse~f~awiHiKalR-vFVESVLRYGLP~~F~~~ 318 (375)
-.+++.|||| .|++.+..|+....+. ---=-..+.|+|+.|...
T Consensus 95 ~~N~lR~f~R-~~~~~~~~l~~~g~~~~p~~~~aak~Gvp~~y~yl 139 (188)
T PF01785_consen 95 YPNPLRQFMR-SFEAEILDLLRSGKLKLPNGKLAAKHGVPPQYWYL 139 (188)
T ss_pred CCcHHHHHHH-HhHHHHHHHHHhCCccccccchHHHcCCCCCccCc
Confidence 3467778887 5888888999888888 488889999999998764
No 9
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.29 E-value=2e+02 Score=23.04 Aligned_cols=85 Identities=15% Similarity=0.300 Sum_probs=46.6
Q ss_pred hhhhhhHhhhhhHHHH---HHHHHHHHHHhhccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHH
Q 017229 54 ALSDDLVKSNSFVESV---SHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVA 130 (375)
Q Consensus 54 ~lsDeL~K~D~~~e~~---v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~ 130 (375)
.+..+|..+.+.+..+ ++.+...+.+|..-++...-...|++. |+ ..+..++.+.|.+...
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~----fv------------~~~~~~~~~~L~~~~~ 72 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKM----FV------------KQDKEEAIEELEERIE 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTE----EE------------EEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHH----HH------------HhhHHHHHHHHHHHHH
Confidence 3445566666555554 444555555655433322344456654 22 3466666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 017229 131 KIEDDLKVRVAEYNNVRSQLNAIN 154 (375)
Q Consensus 131 ~id~dlk~k~~~Yn~~K~~l~~~~ 154 (375)
.++.+++........+..++..++
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555555544
No 10
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=35.09 E-value=2.9e+02 Score=25.96 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=38.5
Q ss_pred ceeECCCChhhhhcccccccccCCCCC-----CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017229 90 SLSVDGVPVDTYLTRFVWDEAKYPTMS-----PLREIVDGIHT-------LVAKIEDDLKVRVAEYNNVRSQLNAINRK 156 (375)
Q Consensus 90 ~l~v~~~~~~~Yl~~F~Wd~aKyp~~~-----~l~elv~~i~~-------ev~~id~dlk~k~~~Yn~~K~~l~~~~RK 156 (375)
.++|+|+++++|| +|||... .|.-+-..|.. -+++=-=.+....++||.+-+.+..++-+
T Consensus 111 gI~VdG~sid~Yl-------~k~~~~~~LdkG~LqAVKAALd~~snr~TD~vsQsQLqiQk~~QtyN~~vs~~nslqs~ 182 (196)
T PRK15364 111 GILIDGMTIDDYM-------AKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQITIQKMSQELNAVLTQLTGLISK 182 (196)
T ss_pred CceecccchHHHH-------hccCCccCCChhhHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999 5577433 23333333322 23333445678889999988888887744
No 11
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=31.47 E-value=4.5e+02 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 017229 123 DGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGS 160 (375)
Q Consensus 123 ~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~Gn 160 (375)
.-|.....+-..+.|.|..+|....+.|..+.||..|+
T Consensus 110 k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~ 147 (232)
T cd07646 110 RYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGS 147 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34556777888999999999999999999999998875
No 12
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=46 Score=34.80 Aligned_cols=30 Identities=33% Similarity=0.794 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCCce
Q 017229 285 SYGEVFSSWMHFCAVRVFAESILRYGLPPSFL 316 (375)
Q Consensus 285 ~fse~f~awiHiKalRvFVESVLRYGLP~~F~ 316 (375)
.|-|-|++++|.-.+.+|+|+=||| ||.|.
T Consensus 220 tflefy~~ll~fV~~Kly~~~gl~y--PpK~d 249 (591)
T COG5163 220 TFLEFYSTLLHFVSLKLYVEEGLDY--PPKFD 249 (591)
T ss_pred HHHHHHHHHHHHhhHHHHHhhcccC--Ccccc
Confidence 5889999999999999999999999 66654
No 13
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.19 E-value=66 Score=35.65 Aligned_cols=135 Identities=14% Similarity=0.246 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccccccCccCCCCCCccccCcceEEEEEecCCChH
Q 017229 115 MSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQK 194 (375)
Q Consensus 115 ~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~diV~~edfvdsEyLtTllV~VPk~~~~ 194 (375)
++-.++|+|.+.++.-++=+|+..+.-.|+.+..=|+++-|- -.++|+|..|+ +|+-..-|.+.--
T Consensus 505 rqevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E---~VsIRdl~tIl-----------Etlad~a~~~kd~ 570 (696)
T COG1298 505 RQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKE---RVSIRDLPTIL-----------ETLADYAPITKDP 570 (696)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHHHhc---CCccccHHHHH-----------HHHHHhcccCCCH
Confidence 345677888888888888888888888899999999998876 46788888774 2222222222211
Q ss_pred HHHHHhcccCCccccCCcccccc---cCCeeEEEEEEecccHHHHHHHHHHcCCeeccCcCCHHHHHHHHHHHHHHHHH
Q 017229 195 DWLASYETLTSYVVPRSSKLLYE---DNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHD 270 (375)
Q Consensus 195 ~w~~~YEtL~~~VVPrSs~~i~e---D~e~~L~~V~lFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~ 270 (375)
+ -|+..|=-+=+++|+. |++-.|+-+|+=-+...-+.+..++.+ ..+++..++...++..++..+...+
T Consensus 571 ~------~L~e~VR~~L~r~I~~~~~~~~~~L~VitL~~~~E~~l~~s~~~~~-~~~~~~i~p~~~~~l~~~v~~~~~~ 642 (696)
T COG1298 571 D------ELTEKVRQALGRQITQQLLDENGELEVITLDPSLEQLLLNSLQKGG-ELDELPLDPDLLEKLIRQVKEELER 642 (696)
T ss_pred H------HHHHHHHHHHHHHHHHHhhCcCCeEEEEEeChHHHHHHHHHHhccC-ccccccCChHHHHHHHHHHHHHHHH
Confidence 1 2344444445566653 555678888887777777777777777 8888889998888766666555443
No 14
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=26.40 E-value=1.7e+02 Score=29.11 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=43.2
Q ss_pred eeccCcCCHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhc
Q 017229 246 QIRDFEYSSE-AQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRY 309 (375)
Q Consensus 246 ~vRdF~y~ee-~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRY 309 (375)
.||.++-+-. .+++.++|+.-+++|..+| .+..|++--+-|..-. =|++.||=|||+-.-|
T Consensus 186 ~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQ-aEiTrLLLEGIsstH~--nhLrCL~dFVeaQmty 247 (375)
T KOG3725|consen 186 TVRNSKTSGGFTIEQAEQELRVAQAEFDRQ-AEITRLLLEGISSTHN--NHLRCLRDFVEAQMTY 247 (375)
T ss_pred ccccccccCcchHhHHHHHHHHHHHHHhHH-HHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHHH
Confidence 4676655542 3445667777788888776 5667777766665443 4899999999998877
No 15
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=26.31 E-value=58 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCChhhhHhhh-hhhHhhhhhHHHHHHHHHHHHHH
Q 017229 45 RVGTLDSLLALS-DDLVKSNSFVESVSHKIRRQIEE 79 (375)
Q Consensus 45 KvGTLDsLv~ls-DeL~K~D~~~e~~v~Ki~~~~~~ 79 (375)
++||+|.|+..+ |||.+++..=+.+.+.|.+.+.+
T Consensus 22 ~f~sl~~l~~a~~e~L~~i~gIG~~~A~si~~ff~~ 57 (64)
T PF12826_consen 22 HFGSLEALMNASVEELSAIPGIGPKIAQSIYEFFQD 57 (64)
T ss_dssp CCSCHHHHCC--HHHHCTSTT--HHHHHHHHHHHH-
T ss_pred HcCCHHHHHHcCHHHHhccCCcCHHHHHHHHHHHCC
Confidence 467899888775 67888887777777777777665
No 16
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=26.28 E-value=1.6e+02 Score=24.52 Aligned_cols=68 Identities=7% Similarity=0.164 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHhhccccc----------c-------ccceeECCCChhhhh---------cccccccccCCCCC
Q 017229 63 NSFVESVSHKIRRQIEELERVSGI----------E-------SSSLSVDGVPVDTYL---------TRFVWDEAKYPTMS 116 (375)
Q Consensus 63 D~~~e~~v~Ki~~~~~~l~~~~~~----------~-------~~~l~v~~~~~~~Yl---------~~F~Wd~aKyp~~~ 116 (375)
...++.++..|++.+.++.++... + .....||-+++-.=| .+|.|+..++-..|
T Consensus 3 ~~~ad~~L~~ie~~le~~~d~~~d~~~D~e~~~gVLti~~~~~~~~VINkQ~p~~QIWlsSp~sGp~hfd~~~~~Wi~~r 82 (97)
T TIGR03422 3 HKVADEYLDHLLDKLEELGESRPDLDFDVEYSSGVLTLELPSVGTYVINKQPPNKQIWLSSPVSGPKRYDYVNGEWIYLR 82 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccCCCEEEEEECCCCEEEEeCCChhhHHheecCCCCCcceeecCCEEEECC
Confidence 345666666777776654322110 0 122335555554443 48999999998888
Q ss_pred CHHHHHHHHHHHHH
Q 017229 117 PLREIVDGIHTLVA 130 (375)
Q Consensus 117 ~l~elv~~i~~ev~ 130 (375)
+=.+|.+.|+++++
T Consensus 83 ~g~~L~~~L~~e~~ 96 (97)
T TIGR03422 83 DGSSLTELLEEELS 96 (97)
T ss_pred CCChHHHHHHHHHc
Confidence 88888888888875
No 17
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=26.01 E-value=6.1e+02 Score=24.53 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 017229 124 GIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGS 160 (375)
Q Consensus 124 ~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~Gn 160 (375)
-|+.....-..+.|.|..++....+.|..+.||..|+
T Consensus 109 yi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~ 145 (226)
T cd07645 109 YMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGR 145 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3445566677889999999999999999999998874
No 18
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.44 E-value=75 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.6
Q ss_pred HcCCeeccCcCCHHHHHHHHHHHHHHHHHHHH
Q 017229 242 EKGFQIRDFEYSSEAQESRNQELEKLVHDQES 273 (375)
Q Consensus 242 e~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~ 273 (375)
.-||-|-.|+--||+.++.++|+++++++.++
T Consensus 55 ~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 55 TLGYGVATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999998865
No 19
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=24.77 E-value=2e+02 Score=29.77 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCCC
Q 017229 18 SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVP 97 (375)
Q Consensus 18 ~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~ 97 (375)
..|+.|+..+-..-.-.+-....-|=|| .+||. -.+.+++++++++-+...--..=+. ..
T Consensus 165 ~lfe~i~~kl~~ai~kv~p~~~~~PLlK-kpl~~-----a~w~~iE~~~~~~~~ey~~Rr~ll~--------------sR 224 (465)
T KOG3973|consen 165 KLFETIRQKLDGAIKKVSPSQRSHPLLK-KPLDE-----ATWPEIEKQCESFSREYYNRRLLLN--------------SR 224 (465)
T ss_pred HHHHHHHHHHHhHHhcCCHhhcCCchhc-CcCCh-----hhHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 4555555554211000112335557777 66664 3577888888887765543222111 11
Q ss_pred hhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhCCCccccccCcc
Q 017229 98 VDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDD-LKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSN 168 (375)
Q Consensus 98 ~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~d-lk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~d 168 (375)
++-=+++|.|++.- +.--.|+.++++.-+..|+.- ..+-++..=.|++.|..++|..++|.--|.-+-
T Consensus 225 L~vTVqSF~Wsdr~---k~~~~ei~~~~~~~~rei~~~K~~~dvahLLaArsdL~~I~ktSS~~~Re~Task 293 (465)
T KOG3973|consen 225 LKVTVQSFLWSDRL---KMHREEIQSILSARVREIGRVKANSDVAHLLAARSDLLYIQKTSSMDRRERTASK 293 (465)
T ss_pred HHHHHHhhcccHHH---HHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhhHHHHHhhcccchhhhhhhh
Confidence 23345788998742 222236667777666665431 122334555788888888888777765554333
No 20
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.50 E-value=2.1e+02 Score=23.75 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017229 117 PLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (375)
Q Consensus 117 ~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~ 153 (375)
.+.+=++.|.+.+.+++++++.+...++.++.+++.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555566666666777777777777666653
No 21
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.10 E-value=2.5e+02 Score=24.23 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=27.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017229 107 WDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (375)
Q Consensus 107 Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~ 154 (375)
|=-+-|=...++.|-++.|.+.+..++..++.-......++.+++.+.
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556677777777766666665555555555555555544443
No 22
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.98 E-value=3.9e+02 Score=21.54 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceE
Q 017229 257 QESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLA 317 (375)
Q Consensus 257 ~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~ 317 (375)
.+...+....+-.+.++........+...-..+=...--+..+.-|+|.+|..|=|+.|..
T Consensus 52 ~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~ 112 (127)
T smart00502 52 RNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLL 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3334444455555555555666666666677777777778889999999999999998763
No 23
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=23.65 E-value=3.2e+02 Score=21.68 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccccccCccCCCCCCc--c-ccCcceEEEEEe
Q 017229 112 YPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDI--I-TSEHLVTLLAVV 188 (375)
Q Consensus 112 yp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~diV~~edf--v-dsEyLtTllV~V 188 (375)
.|.+-||.++.+-|.+.+....+..+...-..+-++....+++++-. ..++=.-+|+++.. | +-.-....|++-
T Consensus 20 LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~---~~~~~~v~i~~~~~C~vC~k~l~~~~f~~~ 96 (109)
T PF10367_consen 20 LPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELV---KLRSRSVVITESTKCSVCGKPLGNSVFVVF 96 (109)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---hhcCceEEECCCCCccCcCCcCCCceEEEe
Confidence 48888999999999999999888888777777777766666554422 11222223333321 2 333334566666
Q ss_pred cCC
Q 017229 189 PKY 191 (375)
Q Consensus 189 Pk~ 191 (375)
|.+
T Consensus 97 p~~ 99 (109)
T PF10367_consen 97 PCG 99 (109)
T ss_pred CCC
Confidence 664
No 24
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.39 E-value=1.9e+02 Score=26.32 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=44.7
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 017229 247 IRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILR 308 (375)
Q Consensus 247 vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLR 308 (375)
.-=|+.|+... .+++.+..........+|.++|.+.=|++-.-|+..+-.-.=-|-+-|
T Consensus 37 l~~Y~~DPh~s---~~~L~~~~~~Ln~~Q~~L~~lcet~~~~l~e~~~~~~~~AaRgee~~~ 95 (170)
T COG4010 37 LNFYKSDPHNS---MKELKRINDMLNSIQEELLELCETVSSDLPEQWIEKLKRAARGEEVHR 95 (170)
T ss_pred HHHhccCCcch---HHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhcccccC
Confidence 33467777665 678888888888999999999999999999999987655443444444
No 25
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.24 E-value=2.7e+02 Score=22.92 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 114 ~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (375)
..++..++.+.|.+.+..|+..++.-...+..+...+..++.
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888777777777777777666666666666655543
No 26
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.04 E-value=1.1e+02 Score=30.38 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHh--hhhhHHHHHHHHHHHHHHhhccccccccceeEC-
Q 017229 18 SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVK--SNSFVESVSHKIRRQIEELERVSGIESSSLSVD- 94 (375)
Q Consensus 18 ~~~~~L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K--~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~- 94 (375)
..-..|+.-+.+.+..+.++.+.=|.||--=|+.|..+..+|.. +-..-+.-++++..++.|+... .+.|+
T Consensus 97 S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa------~vkV~W 170 (269)
T PF05278_consen 97 SQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESA------KVKVDW 170 (269)
T ss_pred hHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHc------CcchHH
Confidence 34445555556666667778888899999999999999999987 4678888899999999998632 12221
Q ss_pred -CCChhh---hhcccc-cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017229 95 -GVPVDT---YLTRFV-WDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (375)
Q Consensus 95 -~~~~~~---Yl~~F~-Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~ 154 (375)
...+++ +...+. |.++.=-.. -..-.+.....++....++++.+-..+.+++.++..+.
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~eke-~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEEKE-EKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMK 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222 211121 222221111 12223455567777777888888888887777776554
No 27
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.56 E-value=85 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHhcCCCC------CCCcCCCCCCccCCCCC-CCcccceEE
Q 017229 325 KGEKKVRSILEELCGNANS------TFWKSEDDGGMMAGLGG-DADSHPYVS 369 (375)
Q Consensus 325 k~~kkl~~~L~~~f~~l~~------~~~~~~~~~~~~~g~~~-~~ey~pyV~ 369 (375)
++..++.+.+.+.|++||. +.+.++.+.- .+|+++ |.--|-|++
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vLYvn~~eS~~~~~-~GGvV~eDgR~y~F~Y 52 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVLYVNPYESDEDRL-TGGVVMEDGRHYTFVY 52 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEEEEcccccCCCeE-eccEEEeCCCEEEEEE
Confidence 4567899999999999998 3333332211 346543 567777775
No 28
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.07 E-value=3.4e+02 Score=22.35 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229 116 SPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 116 ~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (375)
..|.+-++.|..++.+++..++......+++|.++..+++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677788899999999999999999999999999988763
No 29
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.01 E-value=6.3e+02 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229 118 LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 118 l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (375)
.++-.+..++++.++.++++.+-.+...+|.|..++++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777888999999999999999999999999988775
No 30
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=20.94 E-value=50 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCC
Q 017229 289 VFSSWMHFCAVRVFAESILRYGLP 312 (375)
Q Consensus 289 ~f~awiHiKalRvFVESVLRYGLP 312 (375)
+|--.|-=+-+|.-||++|+|||-
T Consensus 19 vlPqLIpD~~~r~vC~alllfGLn 42 (75)
T PRK15356 19 ALTVIVPDKKLQLVCLALLLAGLN 42 (75)
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcC
Confidence 344445557789999999999994
No 31
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.87 E-value=98 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 114 ~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (375)
+...|.+++..++.++.++--++....+.|+........-.|
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R 52 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKR 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHH
Confidence 445677777777777777777777777777766555444333
No 32
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.54 E-value=84 Score=34.41 Aligned_cols=50 Identities=16% Similarity=0.370 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccccccCccCCC
Q 017229 122 VDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVK 171 (375)
Q Consensus 122 v~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~diV~ 171 (375)
+..+..++..+..+++.|-..|++++..+..+.+...-+-=|+.+.+||+
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~ 498 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 45777889999999999999999999999998877666666777777764
Done!