Query 017229
Match_columns 375
No_of_seqs 130 out of 219
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7l_A Vacuolar ATP synthase s 100.0 4E-132 1E-136 993.7 40.5 370 2-374 8-392 (392)
2 3rrk_A V-type ATPase 116 kDa s 97.0 0.11 3.6E-06 50.5 21.0 196 120-336 99-307 (357)
3 2p22_C Protein SRN2; endosome, 48.4 10 0.00035 34.2 2.9 47 34-80 24-74 (192)
4 2a2f_X Exocyst complex compone 46.4 8 0.00027 37.5 2.0 104 63-168 14-123 (325)
5 3ghg_A Fibrinogen alpha chain; 33.7 34 0.0012 35.4 4.3 78 56-161 52-130 (562)
6 3gwk_C SAG1039, putative uncha 30.5 1.7E+02 0.0058 21.9 9.7 87 48-153 9-95 (98)
7 2lci_A Protein OR36; structura 30.2 59 0.002 26.3 4.3 72 184-269 55-126 (134)
8 4ioe_A Secreted protein ESXB; 26.0 2E+02 0.0068 21.2 7.1 81 47-146 9-89 (93)
9 2zqm_A Prefoldin beta subunit 25.6 1.5E+02 0.005 23.3 6.1 41 115-155 65-112 (117)
10 3htk_A Structural maintenance 25.3 1.8E+02 0.0061 20.4 6.2 37 117-153 2-38 (60)
11 1v9m_A V-type ATP synthase sub 24.5 63 0.0022 30.0 4.2 39 276-315 267-315 (323)
12 3ghg_C Fibrinogen gamma chain; 23.6 3.5E+02 0.012 26.9 9.6 92 54-156 24-134 (411)
13 1ng7_A Poliovirus 3A-N, genome 22.3 35 0.0012 25.2 1.5 16 234-249 32-47 (60)
14 3u0c_A Invasin IPAB, 62 kDa an 21.2 1.9E+02 0.0066 25.5 6.3 38 120-157 96-133 (201)
15 1m1j_C Fibrinogen gamma chain; 20.7 3.7E+02 0.013 26.6 9.1 29 54-82 24-52 (409)
No 1
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=3.9e-132 Score=993.73 Aligned_cols=370 Identities=33% Similarity=0.568 Sum_probs=340.5
Q ss_pred CceEEEEeecCCCC----hHHHHHH-HHHHhccCCCCCCceeccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHH
Q 017229 2 ASRYWVVSLPVQNS----AASVWNR-LQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQ 76 (375)
Q Consensus 2 ~~~~~LvslP~~~~----~~~~~~~-L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~ 76 (375)
+++|||||+|.+++ ++++|+. |+..+++. .+.+++|+||+|||||||+||+|||||+|+|++||++++||+++
T Consensus 8 ~~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~f~IP~lkvGTLDsLv~lsDdL~Kld~~ve~v~~Ki~~~ 85 (392)
T 1u7l_A 8 ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGG--RAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEI 85 (392)
T ss_dssp CCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGG--TSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCCCccHHHHHHHHHHhhccCC--CCccccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998643 4488887 88887754 37889999999999999999999999999999999999999999
Q ss_pred HHHhhcc-ccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017229 77 IEELERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 77 ~~~l~~~-~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (375)
+++++++ .++..+++ +||+++++||++|+||++|||.++||+||+++|++++++||+|+|+|+++||++|++|++++|
T Consensus 86 ~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~R 164 (392)
T 1u7l_A 86 LQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 164 (392)
T ss_dssp HHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999865 45567788 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccccccCccCCCCCCcc-ccCcceEEEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHH
Q 017229 156 KQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVAD 234 (375)
Q Consensus 156 K~~GnL~~rsL~diV~~edfv-dsEyLtTllV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~ 234 (375)
|++|||++|||++||+||||| |||||||++|||||++++||+++||||++|||||||++|++|+||+||+||+|||+++
T Consensus 165 K~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~~ 244 (392)
T 1u7l_A 165 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 244 (392)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred ccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeccCcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCC
Q 017229 235 NFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPS 314 (375)
Q Consensus 235 eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~ 314 (375)
||+++|||+||+||||+|+|+.++++++|+++++++++++|++|+|||++||||+|++|||||||||||||||||||||+
T Consensus 245 eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~ 324 (392)
T 1u7l_A 245 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH 324 (392)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCChHHHHHHHHHHhcCCCCCCCcCC-------CCCCccCCCC-CCCcccceEEEEEec
Q 017229 315 FLACVLAPSVKGEKKVRSILEELCGNANSTFWKSE-------DDGGMMAGLG-GDADSHPYVSFTINL 374 (375)
Q Consensus 315 F~~~li~p~~k~~kkl~~~L~~~f~~l~~~~~~~~-------~~~~~~~g~~-~~~ey~pyV~~~i~~ 374 (375)
|++++|+|++|++||+|++|.++|+|||+++++.+ ++.++.+|+. +++||||||+|+|++
T Consensus 325 F~a~li~p~~k~~kKlr~~L~~~f~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~pyV~~~i~~ 392 (392)
T 1u7l_A 325 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 392 (392)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred ceEEEEEeCCccHHHHHHHHHHHhccccccccccccccccccccchhhccccCCCcccceeEEEEEeC
Confidence 99999999999999999999999999999888654 2222234543 478999999999985
No 2
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=96.96 E-value=0.11 Score=50.48 Aligned_cols=196 Identities=10% Similarity=0.012 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhCCC-ccccccCccCCCCCCccccCcceEEEEEe-cCCChH
Q 017229 120 EIVDGIHTLVAKIEDDLKVRVAEYNNVRSQ---LNAINRKQSG-SLAVRDLSNLVKPEDIITSEHLVTLLAVV-PKYSQK 194 (375)
Q Consensus 120 elv~~i~~ev~~id~dlk~k~~~Yn~~K~~---l~~~~RK~~G-nL~~rsL~diV~~edfvdsEyLtTllV~V-Pk~~~~ 194 (375)
+.++.+.+++..+++.+...-+....++.. +..+.-= + +|- -+-++--+...| |+....
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~--~~~ld--------------~~~~~g~~~g~ip~~~~~~ 162 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL--AHGLD--------------ESPRLGVIPFLVAKPEELE 162 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTT--------------TCTTEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hccCC--------------ccceeeeeeEEecChhhHH
Confidence 335566666666666666666666666666 5554322 2 332 244565566689 688888
Q ss_pred HHHHHhcccCC--ccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeccCc------CCHHHHHHHHHHHHH
Q 017229 195 DWLASYETLTS--YVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFE------YSSEAQESRNQELEK 266 (375)
Q Consensus 195 ~w~~~YEtL~~--~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~re~kf~vRdF~------y~ee~~~~~~~e~~~ 266 (375)
.|.+..+..++ ++. .+.+|.+++.+-|..-+...++....|+..+|..=++- --.+.+++.+++++.
T Consensus 163 ~~~~~l~~~~~~~~~~-----~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~ 237 (357)
T 3rrk_A 163 AVRKALQEALADRFVL-----EAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARL 237 (357)
T ss_dssp HHHHHHHHHHTTSCEE-----EEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEE-----EeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHH
Confidence 99887776432 333 34567776666666668889999999999998765543 223566789999999
Q ss_pred HHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCceEEEEecCCCChHHHHHHHHH
Q 017229 267 LVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEE 336 (375)
Q Consensus 267 l~~~~~~~~~~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~~~li~p~~k~~kkl~~~L~~ 336 (375)
++++.++....|.++++....++-..+-.+...+-.-+....++-=-+...+--+.+.+...++++.|.+
T Consensus 238 l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gWvp~~~~~~~~~~l~~ 307 (357)
T 3rrk_A 238 APEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGKVEEALGR 307 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEECTTTHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcEEEEEEEeeHHHHHHHHHHHHh
Confidence 9999999999999988877777666666666655555555554432233333344567889999999988
No 3
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=48.43 E-value=10 Score=34.17 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCceeccCCC-CCCCChhhhHhhhhhh-HhhhhhHHHH--HHHHHHHHHHh
Q 017229 34 TPLYRFNIPN-LRVGTLDSLLALSDDL-VKSNSFVESV--SHKIRRQIEEL 80 (375)
Q Consensus 34 ~~~~~f~iP~-fKvGTLDsLv~lsDeL-~K~D~~~e~~--v~Ki~~~~~~l 80 (375)
+++..|++|+ ++--|.+.|-.+.++= .+++.++... ++.+...+.++
T Consensus 24 ~~~~~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l 74 (192)
T 2p22_C 24 EKSKNIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF 74 (192)
T ss_dssp --CCCCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH
T ss_pred CcccCCCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3467899997 9999999999999998 8888887655 55555544444
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=46.45 E-value=8 Score=37.51 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccceeECC-CChhhhhccccccc-----ccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017229 63 NSFVESVSHKIRRQIEELERVSGIESSSLSVDG-VPVDTYLTRFVWDE-----AKYPTMSPLREIVDGIHTLVAKIEDDL 136 (375)
Q Consensus 63 D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~-~~~~~Yl~~F~Wd~-----aKyp~~~~l~elv~~i~~ev~~id~dl 136 (375)
|.+.|-++++....+.+++.+++ ...+.|+. ...+..+..|.|.+ ..||..-|-..++=.+...+.+.-++.
T Consensus 14 d~Y~elLl~~~~~~f~~il~~D~--y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~ 91 (325)
T 2a2f_X 14 DHYNEVLLQRWVHVFREILDKEQ--FLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFMYAC 91 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHHHHH
Confidence 78899999999999999886543 66777766 45777789999965 568988888888877777777766665
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCccccccCcc
Q 017229 137 KVRVAEYNNVRSQLNAINRKQSGSLAVRDLSN 168 (375)
Q Consensus 137 k~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~d 168 (375)
=.=...++.--++...+-||....|.+|.+++
T Consensus 92 ~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~ 123 (325)
T 2a2f_X 92 MKFAEELTLSPNEVAAMVRKAANLLLTRSFSG 123 (325)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 44444443333444555566566666654444
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.74 E-value=34 Score=35.39 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=54.2
Q ss_pred hhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q 017229 56 SDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDD 135 (375)
Q Consensus 56 sDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ev~~id~d 135 (375)
=.-|.|.|.=+...|.+|.+.+.++-.+. .++.+| .+.+.+.|.+.+.+.- +
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKns-----------Kdseqy----------------~k~~~E~Lr~rq~q~~-d 103 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNN-----------KDSHSL----------------TTNIMEILRGDFSSAN-N 103 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHH-----------HHHHHH----------------HHHHHHTTSSHHHHHH-H
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhc-----------hhHHHH----------------HHHHHHHHHHHHHhhh-c
Confidence 35678889999999999999999984321 223333 2566666766666665 6
Q ss_pred HHHHHHHHH-HHHHHHHHhhhhCCCcc
Q 017229 136 LKVRVAEYN-NVRSQLNAINRKQSGSL 161 (375)
Q Consensus 136 lk~k~~~Yn-~~K~~l~~~~RK~~GnL 161 (375)
..+.+.+|+ +++.+++.|+++-..++
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777787 78888888777755443
No 6
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.55 E-value=1.7e+02 Score=21.91 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=66.4
Q ss_pred ChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHHH
Q 017229 48 TLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHT 127 (375)
Q Consensus 48 TLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ 127 (375)
|.+.|-..+.++...-..+++.+..+...+..|... -.|..-+.|...|+ .+..-+..+..
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~---------W~G~a~~aF~~~~~----------~~~~~~~~~~~ 69 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDEN---------WDGSTFDSFEAQFN----------ELSPKITEFAQ 69 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------BCSSTTHHHHHHHH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------cCcHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 678899999999999999999999998888887532 24566667776553 24445666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017229 128 LVAKIEDDLKVRVAEYNNVRSQLNAI 153 (375)
Q Consensus 128 ev~~id~dlk~k~~~Yn~~K~~l~~~ 153 (375)
.+..|...|+.....|.++-.++++.
T Consensus 70 ~L~~i~~~L~~~a~~~~~~D~~~A~~ 95 (98)
T 3gwk_C 70 LLEDINQQLLKVADIIEQTDADIASQ 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888899999999988877664
No 7
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.16 E-value=59 Score=26.33 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=50.0
Q ss_pred EEEEecCCChHHHHHHhcccCCccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeccCcCCHHHHHHHHHH
Q 017229 184 LLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQE 263 (375)
Q Consensus 184 llV~VPk~~~~~w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e 263 (375)
+++--.|...++-+.---+|.-.|. .+.+|.+ -.-.++|+.+....||-||.-.-|+++..-.++-
T Consensus 55 liisndkqllkemlelisklgykvf-----lllqdqd---------eneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 55 LIISNDKQLLKEMLELISKLGYKVF-----LLLQDQD---------ENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEE-----EEEECSC---------HHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHhCceeE-----EEeecCc---------hhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 3444455666776666666665554 4556665 3456899999999999999999999988766655
Q ss_pred HHHHHH
Q 017229 264 LEKLVH 269 (375)
Q Consensus 264 ~~~l~~ 269 (375)
..++.+
T Consensus 121 mqkags 126 (134)
T 2lci_A 121 MQKAGS 126 (134)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 555443
No 8
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.01 E-value=2e+02 Score=21.19 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=58.0
Q ss_pred CChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCCChhhhhcccccccccCCCCCCHHHHHHHHH
Q 017229 47 GTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIH 126 (375)
Q Consensus 47 GTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~ 126 (375)
-|.+.|-..+.++...-..+++.+..+...+..|... -.|..-..|...|+ .+..-+..+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~---------W~G~a~~af~~~~~----------~~~~~~~~~~ 69 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ---------WAGATQAKFRGEFI----------QSKQAMQQYI 69 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SCHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cCchhhHHHHHHHH----------HHHHHHHHHH
Confidence 4789999999999999999999999999999888632 12445555665442 3344455566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017229 127 TLVAKIEDDLKVRVAEYNNV 146 (375)
Q Consensus 127 ~ev~~id~dlk~k~~~Yn~~ 146 (375)
..+..|...|+.....|.++
T Consensus 70 ~~L~~i~~~L~~~A~~~~~~ 89 (93)
T 4ioe_A 70 PILEGISTDLKRIADKFRNT 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777665
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.61 E-value=1.5e+02 Score=23.33 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Q 017229 115 MSPLREIVDGIHTLVAKIEDD-------LKVRVAEYNNVRSQLNAINR 155 (375)
Q Consensus 115 ~~~l~elv~~i~~ev~~id~d-------lk~k~~~Yn~~K~~l~~~~R 155 (375)
.++..+....|.+....|+.. +...-..+++++.+|.++-.
T Consensus 65 ~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555555544 45555555566666655543
No 10
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.28 E-value=1.8e+02 Score=20.37 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017229 117 PLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (375)
Q Consensus 117 ~l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~ 153 (375)
|+.+-+..+...+....+.++.+-+.|..++.++.++
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666555555555555555555543
No 11
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=24.46 E-value=63 Score=29.98 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=28.8
Q ss_pred hHHHHHHHhhh----h-HHHHHHHHHH-----HHhhhhhhhhhccCCCCc
Q 017229 276 SSLLQWCYTSY----G-EVFSSWMHFC-----AVRVFAESILRYGLPPSF 315 (375)
Q Consensus 276 ~~L~r~~~~~f----s-e~f~awiHiK-----alRvFVESVLRYGLP~~F 315 (375)
..+.++++.++ | ..+.+|++.| -||.=+|++ |||||++.
T Consensus 267 ~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~-~~~l~~e~ 315 (323)
T 1v9m_A 267 CVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRA-YFGLPRAQ 315 (323)
T ss_dssp HHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCCHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHH
Confidence 34444555443 3 7889999988 899999976 89999864
No 12
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.60 E-value=3.5e+02 Score=26.92 Aligned_cols=92 Identities=7% Similarity=0.147 Sum_probs=54.0
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCCChhhhhc--ccccccccCCCCCC--------------
Q 017229 54 ALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLT--RFVWDEAKYPTMSP-------------- 117 (375)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~--~F~Wd~aKyp~~~~-------------- 117 (375)
+++|-|.|..+-|...+..+.+.+.++.+... ...+||+ +=.|..+.=+....
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts-----------~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTS-----------EVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 67899999999999988888888888865321 1222332 22344433322211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017229 118 ---LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRK 156 (375)
Q Consensus 118 ---l~elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK 156 (375)
+..++......+..|..-+....+.-++++..+++++.+
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333444455555555566666666777777777655
No 13
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=22.35 E-value=35 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCeecc
Q 017229 234 DNFRIAAREKGFQIRD 249 (375)
Q Consensus 234 ~eF~~~~re~kf~vRd 249 (375)
++.++.|+++||++-+
T Consensus 32 ~eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 32 QEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHCCceecc
Confidence 5889999999999853
No 14
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=21.24 E-value=1.9e+02 Score=25.55 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 017229 120 EIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQ 157 (375)
Q Consensus 120 elv~~i~~ev~~id~dlk~k~~~Yn~~K~~l~~~~RK~ 157 (375)
+-+....++.+...++++.-..+|+++++..+++++|-
T Consensus 96 D~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKv 133 (201)
T 3u0c_A 96 DKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKI 133 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33445556778899999999999999999999999884
No 15
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.71 E-value=3.7e+02 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=22.2
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhc
Q 017229 54 ALSDDLVKSNSFVESVSHKIRRQIEELER 82 (375)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~ 82 (375)
+++|-|.|...-|..-++.+++++.++..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56777888888888888888777777754
Done!