Query 017230
Match_columns 375
No_of_seqs 185 out of 918
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 1.8E-76 3.9E-81 574.8 15.1 364 1-375 108-474 (549)
2 COG4299 Uncharacterized protei 100.0 1.8E-59 3.9E-64 442.2 19.2 269 32-374 5-277 (371)
3 PF07786 DUF1624: Protein of u 99.9 2E-21 4.4E-26 181.2 18.6 113 34-158 1-118 (223)
4 COG3503 Predicted membrane pro 99.7 2.5E-16 5.3E-21 152.0 16.1 120 33-164 14-138 (323)
5 COG2311 Predicted membrane pro 99.4 6.2E-13 1.3E-17 134.0 12.1 124 26-169 4-143 (394)
6 PRK10835 hypothetical protein; 98.9 6.8E-09 1.5E-13 104.9 12.2 103 38-166 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.6 7E-06 1.5E-10 82.8 21.0 82 34-119 1-85 (358)
8 COG4645 Uncharacterized protei 97.7 0.0002 4.3E-09 71.2 10.1 84 27-114 16-102 (410)
9 PF01757 Acyl_transf_3: Acyltr 97.7 0.0054 1.2E-07 57.1 19.2 83 36-118 2-90 (340)
10 PF06423 GWT1: GWT1; InterPro 97.4 0.00078 1.7E-08 59.1 8.9 84 289-373 3-95 (136)
11 PRK03854 opgC glucans biosynth 97.2 0.002 4.4E-08 64.7 10.1 90 29-119 3-101 (375)
12 COG3274 Predicted O-acyltransf 95.7 0.93 2E-05 45.4 17.7 56 32-87 2-64 (332)
13 COG1835 Predicted acyltransfer 92.7 0.072 1.6E-06 53.8 2.5 70 25-100 5-76 (386)
14 COG3594 NolL Fucose 4-O-acetyl 86.9 0.92 2E-05 45.8 4.8 51 31-87 1-54 (343)
15 PF05857 TraX: TraX protein; 78.8 56 0.0012 30.4 13.2 102 37-159 2-103 (219)
16 COG5062 Uncharacterized membra 67.8 26 0.00057 35.8 8.3 78 32-120 108-190 (429)
17 PF11255 DUF3054: Protein of u 51.0 86 0.0019 26.7 7.5 79 287-369 24-105 (112)
18 PRK05771 V-type ATP synthase s 46.3 47 0.001 36.3 6.5 20 287-309 344-363 (646)
19 PRK13706 conjugal transfer pil 38.7 58 0.0013 31.7 5.1 79 19-112 15-96 (248)
20 KOG4683 Uncharacterized conser 35.1 31 0.00068 35.5 2.8 46 187-234 297-343 (549)
21 PF11654 DUF2665: Protein of u 33.7 54 0.0012 23.9 3.0 31 78-108 9-41 (47)
22 COG3619 Predicted membrane pro 32.7 1.1E+02 0.0023 29.4 5.8 58 63-122 49-106 (226)
23 PF15345 TMEM51: Transmembrane 31.3 21 0.00045 34.3 0.7 21 352-372 58-78 (233)
24 PF13828 DUF4190: Domain of un 28.3 70 0.0015 24.4 3.1 19 321-339 40-58 (62)
25 COG4763 Predicted membrane pro 26.4 18 0.00038 36.4 -0.6 63 23-88 10-76 (388)
26 TIGR02230 ATPase_gene1 F0F1-AT 25.1 2.2E+02 0.0048 23.9 5.7 27 288-314 40-68 (100)
27 PF03596 Cad: Cadmium resistan 22.4 1.6E+02 0.0035 27.4 4.9 68 44-117 99-174 (191)
28 PF10295 DUF2406: Uncharacteri 22.2 66 0.0014 25.3 1.9 26 15-45 39-64 (69)
29 PRK13882 conjugal transfer pro 22.1 7E+02 0.015 23.8 10.6 69 37-112 10-79 (232)
30 PF00510 COX3: Cytochrome c ox 21.5 3.7E+02 0.0081 25.8 7.5 45 317-361 151-199 (258)
31 KOG2532 Permease of the major 20.4 1.9E+02 0.0042 30.4 5.6 24 289-312 295-318 (466)
32 COG4068 Uncharacterized protei 20.4 1.7E+02 0.0037 22.4 3.7 33 307-339 28-60 (64)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-76 Score=574.77 Aligned_cols=364 Identities=42% Similarity=0.736 Sum_probs=309.4
Q ss_pred CcccccccccCCCcccCCCCcchhhhc--cccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHH
Q 017230 1 MSEIKAETTHHHPLIISEPDVSDQQEK--SHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMP 78 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP 78 (375)
|.|||.|..|.|-+--...|.|.-+|+ .+++++|+.|||++||+++++||+||+.|+.||..+|++|||++++|+|||
T Consensus 108 ~~~ik~~~~~d~~~~E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmP 187 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYDEAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMP 187 (549)
T ss_pred HHHHhhccchhhhhccchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHH
Confidence 458899988887765444444444443 445567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHH
Q 017230 79 FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (375)
Q Consensus 79 ~FlFl~G~si~ls~~r~~~~~~~~~~i~~R~l~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all 158 (375)
+|+|++|+|+++|+++...|.+..||...|..+|++.|++++++|.+..+++|++.|.+++|++|||||+|++|++.|++
T Consensus 188 fFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~ 267 (549)
T KOG4683|consen 188 FFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAIL 267 (549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccccCC-CCC
Q 017230 159 EIFTKDVQDKDQSVGRFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLN-PPC 237 (375)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~y~~l~~~l~vp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 237 (375)
..+..+... .+ ..||-+++...+..|-+..++-+||++.+-..+...+.+++.|.++||.+|..+ |.|
T Consensus 268 ~~~~~~~~~-~~----------~S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~C 336 (549)
T KOG4683|consen 268 HTLCCRPIS-PQ----------RSWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKC 336 (549)
T ss_pred hhhccCCCc-cc----------cchhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCc
Confidence 877765211 11 113334444444444444444444444433333333444445555555555554 459
Q ss_pred ChhhhhhhhhcCccccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHhcccc
Q 017230 238 NAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKG 317 (375)
Q Consensus 238 n~a~~iDr~vlG~~HlY~~p~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~DPEGlLstlpai~~~llG~~aG~~l~~~~~ 317 (375)
|+++|.||+++|.+|||++|+|||+|+|++++|++|+++.|+|+||+.||||||+||++.|++++++|.++|+++.+.++
T Consensus 337 nAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~ 416 (549)
T KOG4683|consen 337 NAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKN 416 (549)
T ss_pred cchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCChhHHHHHHHHHHHHHHHHHHhC
Q 017230 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALV 375 (375)
Q Consensus 318 ~~~r~~~ll~~G~~ll~~G~ll~~~~~~PinK~LWT~SfvL~T~G~a~llLa~~y~li 375 (375)
+..|+++|...+.++.++|..+++.+.+|+||+|||.||+.+|+|.|+++++..|++|
T Consensus 417 ~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~i 474 (549)
T KOG4683|consen 417 FQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFI 474 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987789999999999999999999999999999875
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.8e-59 Score=442.17 Aligned_cols=269 Identities=32% Similarity=0.493 Sum_probs=238.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccC---CCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 017230 32 TQRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (375)
Q Consensus 32 ~~Ri~sLD~lRGlai~~MIlvn~~~---~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~R 108 (375)
.-|+.|+|++||+++++||+||+.+ ..|+++.|++|.|+|++|+|||+|+|++|.+|++|.+|..+.+....++.||
T Consensus 5 a~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RR 84 (371)
T COG4299 5 AFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRR 84 (371)
T ss_pred hhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHH
Confidence 4799999999999999999999975 3788999999999999999999999999999999999988777788999999
Q ss_pred HHHHHHHHHHHhhccCCCCCccccccc-ccceeehhhHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhHHHHHH
Q 017230 109 TLKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLM 187 (375)
Q Consensus 109 ~l~L~~lGl~l~~~~~~~~~~~~~~~~-~~~~r~~GVLqrIgl~Yll~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
...+|++|++++.+ +... .|.++ .+.+|.+||||||++||+++++....+++ |+||+.
T Consensus 85 aa~~f~Lg~Lm~~F-~~~~---~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~l 143 (371)
T COG4299 85 AAERFALGYLMGAF-VTVR---DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALL 143 (371)
T ss_pred HHHHHHHHHHhhhc-cccc---eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHH
Confidence 99999999999864 2211 12344 67899999999999999999998877654 589999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccccCCCCCChhhhhhhhhcCccccccCcccccccccCC
Q 017230 188 AACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQ 267 (375)
Q Consensus 188 ~~~ll~~y~~l~~~l~vp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~a~~iDr~vlG~~HlY~~p~~~~~~~~~~ 267 (375)
+.+++++||+++...|+|+.| ++..+|...++|+...+.||+|..
T Consensus 144 aavLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~----------- 188 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA----------- 188 (371)
T ss_pred HHHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc-----------
Confidence 999999999988777888654 334578999999999999999974
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 017230 268 DSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPL 347 (375)
Q Consensus 268 ~~p~~g~~~~~~~~~~~~~~DPEGlLstlpai~~~llG~~aG~~l~~~~~~~~r~~~ll~~G~~ll~~G~ll~~~~~~Pi 347 (375)
+ +.|||||++||+|++++++.|++++|.++++..+.+....+.+.|++++++|+.|.. .+||
T Consensus 189 ----d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi 250 (371)
T COG4299 189 ----D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPI 250 (371)
T ss_pred ----c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--cccc
Confidence 1 358999999999999999999999999997766667777889999999999999986 6999
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHh
Q 017230 348 NKQLYTLSYVCVTSGAAALVFSAIYAL 374 (375)
Q Consensus 348 nK~LWT~SfvL~T~G~a~llLa~~y~l 374 (375)
||+|||||||++|+|++.++++.||-+
T Consensus 251 ~KkLWTssyvl~t~G~~llllaac~~l 277 (371)
T COG4299 251 SKKLWTSSYVLYTAGLGLLLLAACWVL 277 (371)
T ss_pred chhhcCCceeehhhhHHHHHHHHHHHH
Confidence 999999999999999999999999965
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.88 E-value=2e-21 Score=181.24 Aligned_cols=113 Identities=33% Similarity=0.390 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCC-ccc-cc-cC--CCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 017230 34 RLASLDIFRGLAVALMILVDHAGGD-WPE-IS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (375)
Q Consensus 34 Ri~sLD~lRGlai~~MIlvn~~~~~-~~~-l~-ha--~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~R 108 (375)
|+.++|++||+|+++|+++|...+. +.. .+ +. .+......|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 8999999999999999999987531 111 11 11 233456789999999999999999999877655 788999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHH
Q 017230 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (375)
Q Consensus 109 ~l~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all 158 (375)
+++|+++|++++...+ ...++...++||||+||++|++++++
T Consensus 77 ~~~l~~~g~~i~~~~~--------~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTF--------FFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCCceeehhHHHHHHHHHHHHHHH
Confidence 9999999999986521 12346667999999999999998877
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.71 E-value=2.5e-16 Score=152.02 Aligned_cols=120 Identities=27% Similarity=0.318 Sum_probs=94.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCCC--ccccccCCC-cc--hhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 017230 33 QRLASLDIFRGLAVALMILVDHAGGD--WPEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIF 107 (375)
Q Consensus 33 ~Ri~sLD~lRGlai~~MIlvn~~~~~--~~~l~ha~W-~G--~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~ 107 (375)
+|+.+||++||++|+.|++.|...+. ....+.+.- .| ..++..++|.|+|++|+|..++.+|+..| .++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 89999999999999999999976542 112222111 11 35789999999999999999998876553 788999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHHHHHhcc
Q 017230 108 RTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKD 164 (375)
Q Consensus 108 R~l~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all~l~~~~ 164 (375)
|+++|+.+++.+... ||..-++++.++|||+.||++.++...+. ++++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP~ 138 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLPR 138 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCch
Confidence 999999999999876 33233588999999999999999887654 5554
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.44 E-value=6.2e-13 Score=133.97 Aligned_cols=124 Identities=26% Similarity=0.437 Sum_probs=96.0
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCccc----cccCCC-cch-----hhHHH-----HHHHHHHHHHHHHHH
Q 017230 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPW-NGC-----NLADF-----VMPFFLFIVGVAIAL 90 (375)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~----l~ha~W-~G~-----t~~Dl-----vfP~FlFl~G~si~l 90 (375)
++|..+++|+.++|++||+|+++++++|...+.+|- ..+..| .+. -+.|+ +.|+|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 567788999999999999999999999986554431 112222 111 12333 489999999999999
Q ss_pred HhccCCchhHH-HHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHHHHHhccccccc
Q 017230 91 ALKRIPDRADA-VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKD 169 (375)
Q Consensus 91 s~~r~~~~~~~-~~~i~~R~l~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all~l~~~~~~~~~ 169 (375)
..+|+.+|++. ....+||...|+.+|++|..++|+ ++|-+.|.+++++.+.++++++|+
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~--------------------GDIL~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD--------------------GDILLAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHHHhccccH
Confidence 99988777654 555799999999999999877665 344599999999999999887764
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.94 E-value=6.8e-09 Score=104.89 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCccc-------ccc--CCCcch--hhH-----HHHHHHHHHHHHHHHHHHhccCCchhHH
Q 017230 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNGC--NLA-----DFVMPFFLFIVGVAIALALKRIPDRADA 101 (375)
Q Consensus 38 LD~lRGlai~~MIlvn~~~~~~~~-------l~h--a~W~G~--t~~-----DlvfP~FlFl~G~si~ls~~r~~~~~~~ 101 (375)
+|++||+|+++++++|.+....|. ..+ +.+|.. .+. .-.+|+|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999975432221 111 111111 122 335899999999999999875321
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHHHHHhcccc
Q 017230 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (375)
Q Consensus 102 ~~~i~~R~l~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all~l~~~~~~ 166 (375)
...||...|+++|++|...+|++ ||| ..|.+++++.+.+.+.+
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~G----------------DIL----~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWDG----------------DIL----LAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHccc----------------hHH----HHHHHHHHHHHHHHhcc
Confidence 35699999999999997655543 556 88888888888777753
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=7e-06 Score=82.82 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHH
Q 017230 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDR---ADAVKKVIFRTL 110 (375)
Q Consensus 34 Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~---~~~~~~i~~R~l 110 (375)
|...||.+||++++.|..-|.+++.+..+++.++ .+.| .+..|+|++|++..+.+.|+.+| ....+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999766666666654433444333 4444 24689999999999999876543 246788999999
Q ss_pred HHHHHHHHH
Q 017230 111 KLLFWGILL 119 (375)
Q Consensus 111 ~L~~lGl~l 119 (375)
+|...-+++
T Consensus 77 ~lY~a~i~l 85 (358)
T PF10129_consen 77 QLYVAHIAL 85 (358)
T ss_pred HHHHHHHHH
Confidence 887766554
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0002 Score=71.20 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=60.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCch-hH--HHH
Q 017230 27 KSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDR-AD--AVK 103 (375)
Q Consensus 27 ~~~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~-~~--~~~ 103 (375)
..+...+|...||++||++++.|.+-|.++..+..++|.+. .+.|- +-.|+|++|+++.+.+.|+.-+ ++ ...
T Consensus 16 ~~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~l 91 (410)
T COG4645 16 RRAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTL 91 (410)
T ss_pred cccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHH
Confidence 33445689999999999999877665556644444566553 34442 3579999999999999876533 33 345
Q ss_pred HHHHHHHHHHH
Q 017230 104 KVIFRTLKLLF 114 (375)
Q Consensus 104 ~i~~R~l~L~~ 114 (375)
|+++|+..|..
T Consensus 92 kiWrRA~~LY~ 102 (410)
T COG4645 92 KIWRRAMVLYV 102 (410)
T ss_pred HHHHHHHHHHH
Confidence 89999999887
No 9
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.71 E-value=0.0054 Score=57.13 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccc-cccCCCcc--h---hhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 017230 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPWNG--C---NLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (375)
Q Consensus 36 ~sLD~lRGlai~~MIlvn~~~~~~~~-l~ha~W~G--~---t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~R~ 109 (375)
.++|.+||++++++++.|........ ........ . .......|+|.+++|+.+....+++++..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 58999999999999998875532111 11100000 0 456678899999999999811112222223444445555
Q ss_pred HHHHHHHHH
Q 017230 110 LKLLFWGIL 118 (375)
Q Consensus 110 l~L~~lGl~ 118 (375)
...+++..+
T Consensus 82 ~~~~~~~~~ 90 (340)
T PF01757_consen 82 LIPYLFWSL 90 (340)
T ss_pred hHHHHHHHH
Confidence 544444433
No 10
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.44 E-value=0.00078 Score=59.11 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=67.4
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhcccchH---------HHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCChhHHHH
Q 017230 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHL---------ARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 359 (375)
Q Consensus 289 PEGlLstlpai~~~llG~~aG~~l~~~~~~~---------~r~~~ll~~G~~ll~~G~ll~~~~~~PinK~LWT~SfvL~ 359 (375)
-||++|.+.-++.=++|+..|+.+...+... ++..+++.+.+++-++-.+++.. ..|+..|+...+||++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSY-IEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHhcchHHHHH
Confidence 5999999999999999999999986443322 33445666677777777777543 7999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017230 360 TSGAAALVFSAIYA 373 (375)
Q Consensus 360 T~G~a~llLa~~y~ 373 (375)
+.+.....+++++.
T Consensus 82 v~a~n~~~l~~~~~ 95 (136)
T PF06423_consen 82 VLAFNTFFLALYLL 95 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888765
No 11
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.20 E-value=0.002 Score=64.69 Aligned_cols=90 Identities=21% Similarity=0.165 Sum_probs=59.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCC--Ccc--c--cccCCCcch--hhHH-HHHHHHHHHHHHHHHHHhccCCchh
Q 017230 29 HLKTQRLASLDIFRGLAVALMILVDHAGG--DWP--E--ISHAPWNGC--NLAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (375)
Q Consensus 29 ~~~~~Ri~sLD~lRGlai~~MIlvn~~~~--~~~--~--l~ha~W~G~--t~~D-lvfP~FlFl~G~si~ls~~r~~~~~ 99 (375)
+++++|...+|.+|++++++.++.|.... ..+ . .+.+.|... ...+ ..+|+|.|++|+....+.+|+. .+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~~-~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRYP-PK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-HH
Confidence 45578999999999999999999887421 110 0 111223111 0111 3589999999999888765543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017230 100 DAVKKVIFRTLKLLFWGILL 119 (375)
Q Consensus 100 ~~~~~i~~R~l~L~~lGl~l 119 (375)
+..++-++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 66677788887777776543
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=95.74 E-value=0.93 Score=45.36 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCC-Cccc-c-ccCCC---cch-hhHHHHHHHHHHHHHHH
Q 017230 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPE-I-SHAPW---NGC-NLADFVMPFFLFIVGVA 87 (375)
Q Consensus 32 ~~Ri~sLD~lRGlai~~MIlvn~~~~-~~~~-l-~ha~W---~G~-t~~DlvfP~FlFl~G~s 87 (375)
.+|+.++|++|++|++..+.+|.... .+.. + +...| |+. +..-.+.|+|+++.|.-
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL 64 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL 64 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999888887543 1211 1 12224 443 45667899999999975
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=92.74 E-value=0.072 Score=53.77 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=45.8
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCC--cchhhHHHHHHHHHHHHHHHHHHHhccCCchhH
Q 017230 25 QEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPW--NGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (375)
Q Consensus 25 ~~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W--~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~ 100 (375)
+......++|+.+||.+||+|+++.++.|......+. +..+ +|..-. .+|..++|+-+.-.+.++.++++
T Consensus 5 ~~~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~~g~~gV----diFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 5 MTAINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVGRGVLGV----DLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCccccccccce----eEeeeccHHHHHHHHHHHhhcCC
Confidence 3344455789999999999999998888875432211 1111 122222 36999999999998866554433
No 14
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=86.92 E-value=0.92 Score=45.82 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=37.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCcc---hhhHHHHHHHHHHHHHHH
Q 017230 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNG---CNLADFVMPFFLFIVGVA 87 (375)
Q Consensus 31 ~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G---~t~~DlvfP~FlFl~G~s 87 (375)
+++|..++|+.||+-|++.++-|..+...| |.- .....+-+|+|.|++|.-
T Consensus 1 ~~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 1 MKKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred CchhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 368999999999999999999887553221 321 224455689999999975
No 15
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=78.83 E-value=56 Score=30.36 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Q 017230 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWG 116 (375)
Q Consensus 37 sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~R~l~L~~lG 116 (375)
|-|.+.=+|++.|++-|...-. ....+| -..+.-+.||+|.|+..-+..- ++..+|..+|.+. ++
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~---~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~---~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLF---FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLI---FA 66 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccc---cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHH---HH
Confidence 4688899999999998876221 222223 2236678899999999877554 2345677777544 44
Q ss_pred HHHhhccCCCCCcccccccccceeehhhHHHHHHHHHHHHHHH
Q 017230 117 ILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVE 159 (375)
Q Consensus 117 l~l~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yll~all~ 159 (375)
++-+.++... .. ........+|+-.++++..+...+.
T Consensus 67 lis~ip~~l~-----~~-~~~~~~~~NI~fTl~lg~~~l~~~~ 103 (219)
T PF05857_consen 67 LISQIPFDLA-----FG-KFFDWLSQNILFTLALGLLALYLLD 103 (219)
T ss_pred HHHHHHHHHH-----hh-cccccccccHHHHHHHHHHHHHHHH
Confidence 4443321110 00 1112344577766666555555444
No 16
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=67.83 E-value=26 Score=35.78 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHHHHHHHH----HhccCCCcc-ccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q 017230 32 TQRLASLDIFRGLAVALMIL----VDHAGGDWP-EISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVI 106 (375)
Q Consensus 32 ~~Ri~sLD~lRGlai~~MIl----vn~~~~~~~-~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~ 106 (375)
+.|..++|..|+..+..-+. |+.+- +| -+..++--|.++-|+-.-.|+|-.|+-- .|.++ ++.+
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp~--fprRlgKsetwGtsLMDiGVGSFvynsGivs----~Raks-----K~~l 176 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFPF--FPRRLGKSETWGTSLMDIGVGSFVYNSGIVS----TRAKS-----KRKL 176 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeecccc--chHhhhhhhcccceeeecccceeEeccceee----cccCc-----cHHH
Confidence 45788999999965533222 22221 11 1333443478899999899999888752 12222 2368
Q ss_pred HHHHHHHHHHHHHh
Q 017230 107 FRTLKLLFWGILLQ 120 (375)
Q Consensus 107 ~R~l~L~~lGl~l~ 120 (375)
|-++.|+.+|++=.
T Consensus 177 kn~lillflGflR~ 190 (429)
T COG5062 177 KNALILLFLGFLRY 190 (429)
T ss_pred HhhhHHHHHHHHHH
Confidence 88999999999743
No 17
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=50.97 E-value=86 Score=26.67 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCCCCcccch-HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHH-HHHHHHHHHhhccCCCCCcccCCChhHHHHHHHH
Q 017230 287 FEPEGLLSSV-SSILSTIIGVHFGHVIIHT-KGHLARLKQWVTMG-FALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGA 363 (375)
Q Consensus 287 ~DPEGlLstl-pai~~~llG~~aG~~l~~~-~~~~~r~~~ll~~G-~~ll~~G~ll~~~~~~PinK~LWT~SfvL~T~G~ 363 (375)
.+|.|++.|. |.++-.++|.......++. ++..++....-... +.-..+|+++.. . .+...-..||++++.+.
T Consensus 24 ~~~~~~l~Ta~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~~a~~vG~~LR~---~-~~~~~~~~~FiiVa~~~ 99 (112)
T PF11255_consen 24 LSPAGVLRTAWPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVWLVAVPVGMALRA---L-LFGGGPAWSFIIVALVF 99 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH---H-HhCCCCCcchHHHHHHH
Confidence 4667777765 6555555554444333321 11112221111111 233566777764 2 55666678999999998
Q ss_pred HHHHHH
Q 017230 364 AALVFS 369 (375)
Q Consensus 364 a~llLa 369 (375)
..++|.
T Consensus 100 ~~vlL~ 105 (112)
T PF11255_consen 100 LAVLLL 105 (112)
T ss_pred HHHHHH
Confidence 887775
No 18
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.27 E-value=47 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=9.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHH
Q 017230 287 FEPEGLLSSVSSILSTIIGVHFG 309 (375)
Q Consensus 287 ~DPEGlLstlpai~~~llG~~aG 309 (375)
.||.-++.. ....++|+..|
T Consensus 344 iDPT~~~ai---~f~lfFGmM~g 363 (646)
T PRK05771 344 IDPTPFLAI---FFPLFFGMMLG 363 (646)
T ss_pred cCCccHHHH---HHHHHHHHHHH
Confidence 688665432 12344455444
No 19
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=38.72 E-value=58 Score=31.66 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCcchhhhcc---ccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccC
Q 017230 19 PDVSDQQEKS---HLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRI 95 (375)
Q Consensus 19 ~~~~~~~~~~---~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~ 95 (375)
|.+.|++.++ .++ -++|.+.=+|++.|++-|...... ...+|- ..+.-+.||+|.|.-|+=++. .
T Consensus 15 ~~~~~~~~~~~l~~~~----g~~dlLK~IAli~M~iDHi~~~~~---~~~~~l-~~iGRlAfPiFafVeGfNla~----h 82 (248)
T PRK13706 15 AARTDTWLQSLLVWSP----GQRDIIKTVALVLMVLDHINRILH---LDQEWM-FLAGRGAFPLFALVWGLNLSR----H 82 (248)
T ss_pred hhhhhhhHHHHhcCCc----chhHHHHHHHHHHHHHHHHHHHhC---CcHHHH-HHHHHHHHHHHHHHHHHhhcc----c
Confidence 4455555554 222 367999999999999977643211 112221 135567899999955553221 1
Q ss_pred CchhHHHHHHHHHHHHH
Q 017230 96 PDRADAVKKVIFRTLKL 112 (375)
Q Consensus 96 ~~~~~~~~~i~~R~l~L 112 (375)
.+..+|..+|....
T Consensus 83 ---T~~r~kY~~RL~if 96 (248)
T PRK13706 83 ---AHIRQPAINRLWGW 96 (248)
T ss_pred ---cchHHHHHHHHHHH
Confidence 13346667775543
No 20
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.09 E-value=31 Score=35.52 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccCCCC-CCcCccccccccccccCC
Q 017230 187 MAACVLVVYLALLYGTYVPDWQFTIINKDS-ADYGKVFNVTCGVRAKLN 234 (375)
Q Consensus 187 ~~~~ll~~y~~l~~~l~vp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 234 (375)
+-..++..|..++|++-+|+||-+|.+|+| .|+.. .+.|-..|..+
T Consensus 297 ~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~--~P~CnAvGy~D 343 (549)
T KOG4683|consen 297 VLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNA--HPKCNAVGYAD 343 (549)
T ss_pred HHHHhhhhhhceecccccCCCCcccccCCcccccCC--CCCccchhhhH
Confidence 345566778889999999999999999987 33222 24565444443
No 21
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=33.69 E-value=54 Score=23.87 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccCCch--hHHHHHHHHH
Q 017230 78 PFFLFIVGVAIALALKRIPDR--ADAVKKVIFR 108 (375)
Q Consensus 78 P~FlFl~G~si~ls~~r~~~~--~~~~~~i~~R 108 (375)
|+|...+|++.++...++..+ ++....+++|
T Consensus 9 P~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 889999999999999876543 3444444443
No 22
>COG3619 Predicted membrane protein [Function unknown]
Probab=32.66 E-value=1.1e+02 Score=29.43 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=40.2
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 017230 63 SHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (375)
Q Consensus 63 ~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~~~~~~~~~~i~~R~l~L~~lGl~l~~~ 122 (375)
+-++++.....+...|++.|++|+...-.++|+..| ...-.+.+...++.+++.....
T Consensus 49 ~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 49 ELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 344556567789999999999999988888776544 2233456666677776665443
No 23
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.31 E-value=21 Score=34.32 Aligned_cols=21 Identities=38% Similarity=0.630 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 017230 352 YTLSYVCVTSGAAALVFSAIY 372 (375)
Q Consensus 352 WT~SfvL~T~G~a~llLa~~y 372 (375)
-|.-|||+.+|+++|+|++|.
T Consensus 58 ~SVAyVLVG~Gv~LLLLSICL 78 (233)
T PF15345_consen 58 FSVAYVLVGSGVALLLLSICL 78 (233)
T ss_pred EEEEEehhhHHHHHHHHHHHH
Confidence 467899999999999999985
No 24
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=28.35 E-value=70 Score=24.37 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017230 321 RLKQWVTMGFALLIFGLTL 339 (375)
Q Consensus 321 r~~~ll~~G~~ll~~G~ll 339 (375)
+-+-+...|+++-.++.++
T Consensus 40 ~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 40 RGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 3344566777776666554
No 25
>COG4763 Predicted membrane protein [Function unknown]
Probab=26.42 E-value=18 Score=36.39 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=41.5
Q ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHHhccCCCccc---cccCCCcchhhHH-HHHHHHHHHHHHHH
Q 017230 23 DQQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE---ISHAPWNGCNLAD-FVMPFFLFIVGVAI 88 (375)
Q Consensus 23 ~~~~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~~~~~~~---l~ha~W~G~t~~D-lvfP~FlFl~G~si 88 (375)
.||..-++.|+|..-+|...|+.|++.++.|..-..|+. +.|-- + .+.| +=+|.|....|.-.
T Consensus 10 Papdgfamnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l-~--~~l~p~rmP~Ffl~sg~F~ 76 (388)
T COG4763 10 PAPDGFAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL-S--EVLSPCRMPYFFLYSGPFR 76 (388)
T ss_pred CCCCccccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH-H--HhhchhhhHHHHHHhhHHH
Confidence 345555667999999999999999988887765444432 22311 1 1223 33788888888653
No 26
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.05 E-value=2.2e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=19.1
Q ss_pred CCCCcccchHH--HHHHHHHHHHHHHHhc
Q 017230 288 EPEGLLSSVSS--ILSTIIGVHFGHVIIH 314 (375)
Q Consensus 288 DPEGlLstlpa--i~~~llG~~aG~~l~~ 314 (375)
.--|++|++.+ ++.+++|++.|++|-+
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777654 4578889999999864
No 27
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=22.37 E-value=1.6e+02 Score=27.41 Aligned_cols=68 Identities=28% Similarity=0.493 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCCC---c-cccccCCCcchhhHHHHH--HHHHHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHH
Q 017230 44 LAVALMILVDHAGGD---W-PEISHAPWNGCNLADFVM--PFFLFIVGVAIALALK--RIPDRADAVKKVIFRTLKLLFW 115 (375)
Q Consensus 44 lai~~MIlvn~~~~~---~-~~l~ha~W~G~t~~Dlvf--P~FlFl~G~si~ls~~--r~~~~~~~~~~i~~R~l~L~~l 115 (375)
.+|+.+-+.| .++. | |-+....| .++.. -.|+.++|+-..++.+ |.+.-++...|.-++......+
T Consensus 99 ~~Va~iTiAn-GgDNigIYiP~Fa~~s~-----~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v~I 172 (191)
T PF03596_consen 99 LTVAAITIAN-GGDNIGIYIPLFASLSL-----AELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIVYI 172 (191)
T ss_pred HHhhhhhhhc-CCCeEEEeehhhhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHHHH
Confidence 5666666677 5542 2 33444333 33333 3466666666666553 2222233444444444444444
Q ss_pred HH
Q 017230 116 GI 117 (375)
Q Consensus 116 Gl 117 (375)
|+
T Consensus 173 ~L 174 (191)
T PF03596_consen 173 GL 174 (191)
T ss_pred Hh
Confidence 44
No 28
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=22.19 E-value=66 Score=25.28 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=16.3
Q ss_pred ccCCCCcchhhhccccccchhHHHHHHHHHH
Q 017230 15 IISEPDVSDQQEKSHLKTQRLASLDIFRGLA 45 (375)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~Ri~sLD~lRGla 45 (375)
.|.+||.|..+ +++==.=||.+|||=
T Consensus 39 ~I~~PD~SNPT-----R~R~ERPLDTIRsFE 64 (69)
T PF10295_consen 39 PITDPDRSNPT-----RSRDERPLDTIRSFE 64 (69)
T ss_pred ccCCCCCCCCC-----cccccCchHHHHHHH
Confidence 47788887532 222123589999984
No 29
>PRK13882 conjugal transfer protein TrbP; Provisional
Probab=22.14 E-value=7e+02 Score=23.84 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Q 017230 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRI-PDRADAVKKVIFRTLKL 112 (375)
Q Consensus 37 sLD~lRGlai~~MIlvn~~~~~~~~l~ha~W~G~t~~DlvfP~FlFl~G~si~ls~~r~-~~~~~~~~~i~~R~l~L 112 (375)
+.|.+.=+|++.|.+-|...-..+. ....| ..+.-++||+|.|+...=++ |. -...+..+|..+|....
T Consensus 10 ~~~~LK~IAli~M~iDHi~~~~~~~-~~~~~--~~iGR~AfPiF~f~lv~nl~----~eGf~hT~n~~kY~~RL~if 79 (232)
T PRK13882 10 TREALKWLALLLMTGDHVNKYLFNG-TLPVL--FEAGRVALPLFVFVLAYNLA----RPGALERGDYGRTMKRLALF 79 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCC-ChHHH--HHhhHHHHHHHHHHHHHhhc----cccchhcccHHHHHHHHHHH
Confidence 5688999999999997754311110 01112 23667889999999873211 11 11123456777775543
No 30
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=21.52 E-value=3.7e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccCCChhHHHHHH
Q 017230 317 GHLARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVTS 361 (375)
Q Consensus 317 ~~~~r~~~ll~~G~~ll~~G~ll~~~----~~~PinK~LWT~SfvL~T~ 361 (375)
+++++.+.++...+++.++...++.. ..+-++.+.+.+.|-+.|+
T Consensus 151 ~~~~~~~~~L~~t~~LG~~Fl~~Q~~Ey~~~~~~~~~~~~gS~fy~lTG 199 (258)
T PF00510_consen 151 GNRKAARLWLLLTILLGLLFLVLQVYEYSHAGFTISDSVYGSFFYLLTG 199 (258)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhhH
Confidence 34455556666666555555544321 3577788888888877663
No 31
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.39 E-value=1.9e+02 Score=30.37 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCCcccchHHHHHHHHHHHHHHHH
Q 017230 289 PEGLLSSVSSILSTIIGVHFGHVI 312 (375)
Q Consensus 289 PEGlLstlpai~~~llG~~aG~~l 312 (375)
.-|++|.+|.++.....+.+|.+-
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~ls 318 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLS 318 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999874
No 32
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.36 E-value=1.7e+02 Score=22.42 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Q 017230 307 HFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 339 (375)
Q Consensus 307 ~aG~~l~~~~~~~~r~~~ll~~G~~ll~~G~ll 339 (375)
-+|+++...+.++++...++....++++++..|
T Consensus 28 ~C~eil~ker~R~r~~~~~~~li~aLi~v~vvL 60 (64)
T COG4068 28 ECGEILNKERKRQRNFMILMFLILALILVMVVL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888643333333333333333345555544
Done!