Query 017230
Match_columns 375
No_of_seqs 185 out of 918
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 18.3 98 0.0033 20.9 2.9 22 292-313 7-28 (41)
2 4ar0_A Type IV pilus biogenesi 13.8 1E+02 0.0035 25.4 2.6 12 8-19 4-15 (128)
3 1qle_C Cytochrome C oxidase po 12.4 5.5E+02 0.019 23.6 7.6 75 286-361 134-214 (273)
4 3n2f_G Na+/K+ ATPase gamma sub 12.0 63 0.0021 20.6 0.6 28 64-91 4-31 (31)
5 2l2l_B Methyl-CPG-binding doma 11.3 16 0.00056 24.1 -2.4 25 12-36 3-27 (36)
6 1m56_C Cytochrome C oxidase; m 11.2 7.9E+02 0.027 22.4 8.2 45 317-361 159-207 (266)
7 1v54_C Cytochrome C oxidase po 10.4 6.1E+02 0.021 23.1 7.1 63 299-361 135-202 (261)
8 2jo1_A Phospholemman; FXYD1, N 10.1 2.5E+02 0.0086 21.1 3.4 29 65-93 11-39 (72)
9 2l6x_A GPR, green-light absorb 10.0 9E+02 0.031 21.7 8.0 44 318-367 103-146 (243)
10 4aps_A DI-OR tripeptide H+ sym 9.1 5.1E+02 0.017 24.3 6.3 52 288-339 319-370 (491)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=18.27 E-value=98 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.4
Q ss_pred cccchHHHHHHHHHHHHHHHHh
Q 017230 292 LLSSVSSILSTIIGVHFGHVII 313 (375)
Q Consensus 292 lLstlpai~~~llG~~aG~~l~ 313 (375)
-|||-|-+++..+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 3799999999999999998764
No 2
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=13.81 E-value=1e+02 Score=25.37 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=8.0
Q ss_pred cccCCCcccCCC
Q 017230 8 TTHHHPLIISEP 19 (375)
Q Consensus 8 ~~~~~~~~~~~~ 19 (375)
..||||+.-.|-
T Consensus 4 ~~~~~p~~~~~~ 15 (128)
T 4ar0_A 4 HHHHHPMSDYDI 15 (128)
T ss_dssp SCSSSCSCSTTC
T ss_pred cccCCCCcccCC
Confidence 468899964443
No 3
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=12.38 E-value=5.5e+02 Score=23.63 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=38.6
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHhhc---c-CCCCCcccCCChhHHHH
Q 017230 286 PFEPEGLLSSVSSILSTIIGVHFGHVIIH--TKGHLARLKQWVTMGFALLIFGLTLHF---T-NAIPLNKQLYTLSYVCV 359 (375)
Q Consensus 286 ~~DPEGlLstlpai~~~llG~~aG~~l~~--~~~~~~r~~~ll~~G~~ll~~G~ll~~---~-~~~PinK~LWT~SfvL~ 359 (375)
+.||-++ ..++.++...-|+.+...... .++++++.+.++...+++.+....++. . ..+-++.+.+.++|-+.
T Consensus 134 ~~~~~~l-pllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~l 212 (273)
T 1qle_C 134 TFDPWHL-PLINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMA 212 (273)
T ss_dssp CCCTTTH-HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHHH
T ss_pred cCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 4566432 123333333344444433221 234455566666666666555555432 1 24667888888888777
Q ss_pred HH
Q 017230 360 TS 361 (375)
Q Consensus 360 T~ 361 (375)
|+
T Consensus 213 TG 214 (273)
T 1qle_C 213 TG 214 (273)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=11.98 E-value=63 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.3
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 017230 64 HAPWNGCNLADFVMPFFLFIVGVAIALA 91 (375)
Q Consensus 64 ha~W~G~t~~DlvfP~FlFl~G~si~ls 91 (375)
+-+|+......+++-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 3456667777788888888888877653
No 5
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=11.31 E-value=16 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=20.8
Q ss_pred CCcccCCCCcchhhhccccccchhH
Q 017230 12 HPLIISEPDVSDQQEKSHLKTQRLA 36 (375)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~Ri~ 36 (375)
+++.|+|.|+-.|++......+|++
T Consensus 3 ~~~~Vte~DIr~QE~rV~~aR~rL~ 27 (36)
T 2l2l_B 3 KAFIVTDEDIRKQEERVQQVRKKLE 27 (36)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeCHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999888887777765
No 6
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=11.25 E-value=7.9e+02 Score=22.43 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccCCChhHHHHHH
Q 017230 317 GHLARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVTS 361 (375)
Q Consensus 317 ~~~~r~~~ll~~G~~ll~~G~ll~~~----~~~PinK~LWT~SfvL~T~ 361 (375)
+++++.+.++...+++.+....++.. ..+-++.+.+.++|-+.|+
T Consensus 159 ~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~lTG 207 (266)
T 1m56_C 159 NNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMATG 207 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 44555666666666665555554321 2466788888888877764
No 7
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=10.39 E-value=6.1e+02 Score=23.14 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccCCChhHHHHHH
Q 017230 299 ILSTIIGVHFGHVIIH-TKGHLARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVTS 361 (375)
Q Consensus 299 i~~~llG~~aG~~l~~-~~~~~~r~~~ll~~G~~ll~~G~ll~~~----~~~PinK~LWT~SfvL~T~ 361 (375)
++...-|+.+...... .++++++.+.++...+++.+....++.. ..+-++.+.+.++|-+.|+
T Consensus 135 ~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~lTG 202 (261)
T 1v54_C 135 SVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATG 202 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 3333345444433221 2344555666666666665555554321 2466778888777777654
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.12 E-value=2.5e+02 Score=21.11 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 017230 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (375)
Q Consensus 65 a~W~G~t~~DlvfP~FlFl~G~si~ls~~ 93 (375)
-+|+-+....++|-..+|++|+.+.+|-+
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 35666677889999999999999999974
No 9
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=9.99 E-value=9e+02 Score=21.66 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCChhHHHHHHHHHHHH
Q 017230 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALV 367 (375)
Q Consensus 318 ~~~r~~~ll~~G~~ll~~G~ll~~~~~~PinK~LWT~SfvL~T~G~a~ll 367 (375)
.++.+.+++.+.++|++.|++=.. .+.+|-.| |++=+.++..++
T Consensus 103 ~~~~~~~li~as~vMiv~G~~g~~---~~~~kw~~---f~is~~~~l~Il 146 (243)
T 2l6x_A 103 AGSLFKKLLVGSLVMLVFGYMGEA---GIMAAWPA---FIIGCLAWVYMI 146 (243)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---CSSCTTTH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---hcccHHHH---HHHHHHHHHHHH
Confidence 334455678899999999998766 34556666 444444444443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.07 E-value=5.1e+02 Score=24.26 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Q 017230 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 339 (375)
Q Consensus 288 DPEGlLstlpai~~~llG~~aG~~l~~~~~~~~r~~~ll~~G~~ll~~G~ll 339 (375)
.+.|++.++..++..+.+...|++..+...++....+.+..|.++..+++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 3567888899999988888888865433222222223344555555555543
Done!