Query 017230
Match_columns 375
No_of_seqs 185 out of 918
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 11:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 26.2 26 0.0019 22.0 2.9 22 292-313 7-28 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 18.2 1.5E+02 0.011 25.1 7.5 75 286-361 121-200 (259)
3 d1m56c_ f.25.1.1 (C:) Bacteria 15.0 2.1E+02 0.015 24.0 7.7 18 344-361 189-206 (265)
4 d1l0ba2 c.15.1.3 (A:1705-1801) 6.4 29 0.0021 25.9 -1.4 16 10-25 44-59 (97)
5 d1fftc_ f.25.1.1 (C:) Cytochro 6.4 1.8E+02 0.013 22.7 3.7 45 317-361 75-126 (185)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 5.0 5.7E+02 0.041 20.7 6.4 25 290-314 61-85 (447)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 4.8 2.8E+02 0.021 15.5 2.6 14 353-366 3-16 (30)
8 d1q90r_ f.23.12.1 (R:) ISP sub 4.2 4.2E+02 0.031 16.0 3.6 21 318-338 8-28 (39)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 4.2 7.8E+02 0.057 19.7 6.8 22 292-313 289-310 (447)
10 d1uaza_ f.13.1.1 (A:) Archaerh 4.1 6E+02 0.043 20.5 5.7 33 318-351 110-142 (236)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=26.16 E-value=26 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.4
Q ss_pred cccchHHHHHHHHHHHHHHHHh
Q 017230 292 LLSSVSSILSTIIGVHFGHVII 313 (375)
Q Consensus 292 lLstlpai~~~llG~~aG~~l~ 313 (375)
-|||-|.+++..+++.||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998764
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.25 E-value=1.5e+02 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=42.6
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccCCChhHHHHH
Q 017230 286 PFEPEGLLSSVSSILSTIIGVHFGHVIIH-TKGHLARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVT 360 (375)
Q Consensus 286 ~~DPEGlLstlpai~~~llG~~aG~~l~~-~~~~~~r~~~ll~~G~~ll~~G~ll~~~----~~~PinK~LWT~SfvL~T 360 (375)
+.||.++ ..++.++...-|..+...... +++++++.++++...+++.++....+.. ..+.++.+.+.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 3455543 345555656666655444332 2344555566666666665555544321 256778888888887776
Q ss_pred H
Q 017230 361 S 361 (375)
Q Consensus 361 ~ 361 (375)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.01 E-value=2.1e+02 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCCCcccCCChhHHHHHH
Q 017230 344 AIPLNKQLYTLSYVCVTS 361 (375)
Q Consensus 344 ~~PinK~LWT~SfvL~T~ 361 (375)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 577888888888888765
No 4
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.41 E-value=29 Score=25.88 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=7.8
Q ss_pred cCCCcccCCCCcchhh
Q 017230 10 HHHPLIISEPDVSDQQ 25 (375)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (375)
..||+||.+||...+.
T Consensus 44 ~~~~viVvqpda~t~~ 59 (97)
T d1l0ba2 44 GAHPIVLVQPSAWTED 59 (97)
T ss_dssp SSCCEEEEC-------
T ss_pred CCeeEEEEcCCccccc
Confidence 4599999999976443
No 5
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=6.38 E-value=1.8e+02 Score=22.73 Aligned_cols=45 Identities=4% Similarity=0.219 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc-------cCCCCCcccCCChhHHHHHH
Q 017230 317 GHLARLKQWVTMGFALLIFGLTLHF-------TNAIPLNKQLYTLSYVCVTS 361 (375)
Q Consensus 317 ~~~~r~~~ll~~G~~ll~~G~ll~~-------~~~~PinK~LWT~SfvL~T~ 361 (375)
+.+++.+.++....++.++-+..+. ......+-+.+.+.|-++|+
T Consensus 75 ~~~~~~~~~L~~t~~lG~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 75 NNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp CCGGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcccccccccchhhHHHHHH
Confidence 3444555555544444333322211 12477788888888877664
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.96 E-value=5.7e+02 Score=20.72 Aligned_cols=25 Identities=24% Similarity=0.056 Sum_probs=19.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHhc
Q 017230 290 EGLLSSVSSILSTIIGVHFGHVIIH 314 (375)
Q Consensus 290 EGlLstlpai~~~llG~~aG~~l~~ 314 (375)
-|++.++..++..+....+|.+..+
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888887653
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.79 E-value=2.8e+02 Score=15.48 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=7.9
Q ss_pred ChhHHHHHHHHHHH
Q 017230 353 TLSYVCVTSGAAAL 366 (375)
Q Consensus 353 T~SfvL~T~G~a~l 366 (375)
|..||+.-+.+-.+
T Consensus 3 ~i~yv~ifac~i~l 16 (30)
T d2axtt1 3 TITYVFIFACIIAL 16 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 45677765554333
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.24 E-value=4.2e+02 Score=15.98 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 017230 318 HLARLKQWVTMGFALLIFGLT 338 (375)
Q Consensus 318 ~~~r~~~ll~~G~~ll~~G~l 338 (375)
.++.+.+++..|.+-+..+.+
T Consensus 8 grR~~MNLll~G~~~~~~~g~ 28 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLPITTL 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhhhhh
Confidence 355667777777666554443
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=7.8e+02 Score=19.74 Aligned_cols=22 Identities=5% Similarity=-0.237 Sum_probs=11.6
Q ss_pred cccchHHHHHHHHHHHHHHHHh
Q 017230 292 LLSSVSSILSTIIGVHFGHVII 313 (375)
Q Consensus 292 lLstlpai~~~llG~~aG~~l~ 313 (375)
....+..++.+.....+|.+..
T Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~ 310 (447)
T d1pw4a_ 289 WAYFLYEYAGIPGTLLCGWMSD 310 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhhhhhhhhhh
Confidence 4455555555555555555543
No 10
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.15 E-value=6e+02 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccC
Q 017230 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQL 351 (375)
Q Consensus 318 ~~~r~~~ll~~G~~ll~~G~ll~~~~~~PinK~L 351 (375)
.+..+.+++.+.++|++.|++=... .-|..|-.
T Consensus 110 ~~~~~~~li~a~~~Miv~G~~ge~~-~~~~~~~~ 142 (236)
T d1uaza_ 110 DRVSIGTLVGVDALMIVTGLVGALS-HTPLARYT 142 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-SSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhHH
Confidence 3445667788889999999886652 23444433
Done!