BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017234
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A F M ++ I PD + ++I GD+V A LF M
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+S T+ I+G+ G++ + + I AG S NV TY +LI G K D
Sbjct: 414 C-KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS + EM +G+ P+I ++ GLC ++ + G + L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ G +D+ +E L+ + P ++ F+ ++ + L L+D E + M +
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 351 GLS 353
G++
Sbjct: 591 GIA 593
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K ++ A V M G P+ + +LI GD+ +A L M +PN
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG-LQPNI 491
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY++ ++G GN++ K AAG + + TY +L+ K+ + D +E
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
M+ G+ P+I ++ G C L+ + L ++L G N LVK YC
Sbjct: 552 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I ++ + A H+ ME +G PD +++++ G++ L E+M
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM- 307
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPNS Y + I + + + ++ I G + Y +LI G K D
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +F+ EM S I P + ++ G C + + G + + +L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ YC+ G + + + + SP V+ +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+KP+S ++ S+I LC + A F M+ + P++ Y I GF
Sbjct: 307 MKRKGLKPNSYIYGSII-GLLCRICKLAEAEEAFSEMIR-QGILPDTVVYTTLIDGFCKR 364
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++ A +K++ + + +V TY ++I G + D + + EM G+ P
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ G C + ++ G N L+ C+ G +D E L + K
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P + ++ I+ S +++ VG GL+
Sbjct: 485 IGLQPNIFT--YNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + EA G+ D+ + +L+ A SG++ A + + M+ + +P
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTI 561
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ K +A G + N T+ SL+ + + Y++
Sbjct: 562 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 621
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P E +++G C R + + + G G+ ++ + L+K + + +
Sbjct: 622 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681
Query: 300 VDELEEQLETLTK 312
E E + + +
Sbjct: 682 FLEAREVFDQMRR 694
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 5/189 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ ++ L+ + +S KAQ +L+ L K L+ + L G +++
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED- 579
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ M A+GI P++ FNSL+ ++ A ++++ M S P+ KTY+
Sbjct: 580 --GEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS-RGVGPDGKTYEN 636
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G N+ + GFSV+V TY LI G LK + F +++M G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 245 IIPSIPILE 253
+ I +
Sbjct: 697 LAADKEIFD 705
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS A+ VF G+ + A +N +I G + A L +++ +
Sbjct: 217 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELK 275
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y P+ +Y ++G+ G +D + K G N Y S+I +
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + EM+ GI+P + +++G C R + F
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/145 (18%), Positives = 61/145 (42%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +Y+ I LG + + G++ +V +Y ++++G + + D V +
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E M G+ P+ I ++ LC KL + ++ G + + L+ +C+
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH 322
G + + + + +P+VL +
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTY 389
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 3/251 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + +F+ +G+K D VF+S I + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A +++ M+ + PN TY I G G + Y + G ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + S YE+M+ +G P + I +++GL + + F +LG +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+N + L+ +C L R DE + + P+V F+ ++R+ + RL++
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEGRLEEAL 551
Query: 342 YSVGRMGKQGL 352
+ RM K GL
Sbjct: 552 FLFFRMFKMGL 562
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 3/238 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K + + +L +++ N+ D C +I L K + A F ++ ++PD
Sbjct: 578 KHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIV 637
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N++IC + A +FE++ + PN+ T I ++D + ++
Sbjct: 638 TYNTMICGYCSLRRLDEAERIFELL-KVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSI 696
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G N TY L+ K+ D + + +EEM GI PSI +++GLC R +
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+D + + + L++ YC++GR+ E E + + P+ LL
Sbjct: 757 VDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQ 814
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 53/146 (36%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T+ I+GF G +D + G ++ Y +LI G KA +
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ + + G+ + + ++ L K +L G N L+K C+
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQ 403
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
GR+ E + K P ++ +
Sbjct: 404 DGRIYEAFGMYGQILKRGMEPSIVTY 429
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 2/250 (0%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
++ALI L K E + + KG + Y+ LI + + A T
Sbjct: 249 YNALINGLCKEHDYKG--AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G P+ +SL+ C G AL L+ M+ +PN Y+ + GF S G
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ ++ G S N++TY SLI+G K D + +M++ G P++ +
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++E LC K +S ++ + + +K C+ GR+D E+ + +
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486
Query: 314 NQSPEVLLHF 323
++ P ++ +
Sbjct: 487 HRCPPNIVTY 496
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M+ G +P+ +N L+ A LC + V + +S++ P++ +Y IS
Sbjct: 168 VYRDMKRDGFEPNVFTYNVLLKA-LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G V +A F V Y +LI+G K D+ EM+ GI P++
Sbjct: 227 CEVGLVKE-----GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNV 281
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK-CYCELGRVDELE 304
++ LC +++ SFL +L G N LVK C+ D L+
Sbjct: 282 ISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALD 337
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 97/268 (36%), Gaps = 46/268 (17%)
Query: 57 TTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
TT D++D+ F + +++ L+ S + + ++++ G +
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI--GCSPNIR 388
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI K ++ A++++ M G P+ V+ +++ A A SL EIM
Sbjct: 389 TYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIM 448
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------AANIAA------------ 208
S E P+ T++AFI G G +D K + NI
Sbjct: 449 -SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKAN 507
Query: 209 ---------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
G + TY +L+HGS A + +MM G P +
Sbjct: 508 RIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMN 567
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ C + K +R L + G K
Sbjct: 568 MIILAYCKQGKAERAAQMLDLVSCGRRK 595
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V AL F+ + +S +K T++ I + G VD++ GF + +
Sbjct: 56 VPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFI 115
Query: 219 SLI----HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
S+I L R +V+ FY + G PS+ I VL+ L ++ + +
Sbjct: 116 SVISVYRQVGLAER---AVEMFY-RIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRD 171
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ G++ N L+K C+ +VD ++ L ++ P+ +
Sbjct: 172 MKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAV 217
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 139/325 (42%), Gaps = 41/325 (12%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369
Query: 295 -------------------------CELGR-VDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
C R VDE E + + C P+ FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGL 352
I +YA S R+ + E ++ +M + G
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF 452
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 31/285 (10%)
Query: 82 QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
Q+ PK+A +EW +KM G E A +I G+ NV A+ ++ + +
Sbjct: 222 QNGVPKRA---VEW-FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWR 277
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
D+ F++LI SG+ L+++E M + KPN Y+ I S+G A
Sbjct: 278 IDAVTFSTLIRIYGVSGNYDGCLNIYEEM-KALGVKPNLVIYNRLID---SMGR--AKRP 331
Query: 201 W-----YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
W Y I GF+ N TY +L+ +AR D Y EM G+ ++ IL
Sbjct: 332 WQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTV-ILYNT 390
Query: 256 LEGLCA-RRKLDRVKSFLKFLLG------GGWKINENMAQKLVKCYCELGRVDELEEQLE 308
L +CA R +D + + W + L+ Y GRV E E L
Sbjct: 391 LLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFS-----SLITVYACSGRVSEAEAALL 445
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + P L + +I+ Y + ++DDV + ++ + G++
Sbjct: 446 QMREAGFEP--TLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 488
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 374
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C + V A +F+ M + E P+S T+ + I+ ++
Sbjct: 375 EMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 434
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 435 GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY+ I
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF +D + + G N TY +LIHG +ARD D+ +++M+S G+
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + +++ C+ G+V++ +
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
+L+ P+V+++ SG R
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCR 552
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K ++ A+++FT ME +G++P+ ++SLI +CLC+ + + S +
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI-SCLCNYERWSDASRLLSDM 321
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T++A I F G + K Y I ++ TY SLI+G
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D +E M+S P++ ++ G C +++D
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ + +++++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + ++ + I + NV
Sbjct: 273 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ Y+EM+ I P I ++ G C +LD K + +
Sbjct: 332 TFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ R+DE E +++
Sbjct: 392 ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 7/284 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 84 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 199
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I V++ LC R D + + G + N L+ C C R + L
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +P V+ F+ +I + +L + E M K+ +
Sbjct: 320 DMIERKINPNVVT--FNALIDAFVKEGKLVEAEKLYDEMIKRSI 361
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ P+ +N+L+ +G + A+ +FE +
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 497
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + +P TY+ I G G V+ + + G +V Y ++I G +
Sbjct: 498 RS-KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + +M G +P
Sbjct: 557 EEADALFRKMREDGPLP 573
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
FS Y ++ L + D + M+ +PSI K+L + +K D V
Sbjct: 46 FSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVI 105
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
S + + G N L+ C+C ++ L + K P ++ S ++
Sbjct: 106 SLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT--LSSLLN 163
Query: 330 LYALSDRLDDVEYSVGRMGKQG 351
Y R+ D V +M + G
Sbjct: 164 GYCHGKRISDAVALVDQMVEMG 185
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 43/296 (14%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVF 131
++ A+I L L L L+KM KG E+ + Y +I K +++ A +F
Sbjct: 217 TYGAVINGLCKRGEPDLALNL---LNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLF 273
Query: 132 TSMEAQGIKPDSAVFNSLICACLCS----------------------------------- 156
ME +GIKPD +N LI +CLC+
Sbjct: 274 NKMETKGIKPDVFTYNPLI-SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332
Query: 157 -GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G +V A L++ MV S+ P+ Y+ I GF V+ + + G N
Sbjct: 333 EGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 392
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LIHG +ARD D+ +++M+S G+ P I +L+GLC ++ +++
Sbjct: 393 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
K++ +++ C+ G+V++ + +L+ P V+ + SG R
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ PD +N L+ +G+V TAL +FE M
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM- 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ K + TY I G V+ + + G NV TY +++ G +
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 512
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ D + EM G +P+
Sbjct: 513 EEADALFVEMKEDGPLPN 530
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 87 KKAQLVLEWRL-DKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
K+ +LV +L D+M+K D Y LI K + V M VF M +G+ ++
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
+ +LI + D A +F+ MVS + P+ TY+ + G + GNV+ +
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVS-DGVHPDIMTYNILLDGLCNNGNVETALVVFE 450
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+++ TY ++I KA + + + G+ P++ ++ G C +
Sbjct: 451 YMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 509
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV A+ VF M+ + +K D + ++I A +G V LF +S + KPN TY
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF-CSLSLKGVKPNVVTY 499
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+SGF G + + + G N TY +LI L+ D + +EM S
Sbjct: 500 TTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRS 559
Query: 243 LG 244
G
Sbjct: 560 CG 561
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/215 (16%), Positives = 87/215 (40%), Gaps = 14/215 (6%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
++++ +I+L ++QN+ + +++T ++F + C + AL++
Sbjct: 88 MNKFDLVISLGEQMQNLGISHNLYTY----------SIFINYFCR---RSQLSLALAILG 134
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 135 KMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
E M+ G P + V+ GLC R + D + L + G + + +
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C+ +D+ + + P+V +
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY I
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYSTLI 405
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 465
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL + ++L + + +++ C+ G+V++ E
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
L+ SP V+ + SG R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCR 550
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 4/228 (1%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I K +++ A+++FT M+ +GI+PD ++SLI +CLC
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI-SCLC 304
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N L+ + + D + + + P +L +
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++N++I + AL+LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +P+ TY + IS + G ++ + I + NV T+ +LI +K
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQ 426
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V M +F M +G+ ++ + +LI + D A +F+ MV
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY+ + G G + + + ++ TY +I G KA
Sbjct: 461 SVGVH-PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + + G+ P++ ++ G C + + S LK + G N L
Sbjct: 520 EDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ G + E ++ + C
Sbjct: 580 IRARLRDGDREASAELIKEMRSC 602
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I L G +N + AM VF ++ ++PD +N +I +G V LF +S
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF-CNLSL 531
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ PN Y+ ISGF G+ + + G N TY +LI L+ D ++
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 592 SAELIKEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 631
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 15/220 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE------YKPNSK 180
A+ +F M P FN L+ A V ++ FE+++S E +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSA-------VAKMNKFELVISLGEQMQTLGISHDLY 119
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY FI+ F + A + G+ ++ T SL++G ++ ++M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ +G P ++ GL K + + ++ G + + +V C+ G +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 301 DELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
D L+ + K +V+++ G+ + + D L+
Sbjct: 240 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
T LQ + K A + + LD M++ N D Y C A GKV AM VF+
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYAKQGKVDQ---AMLVFSK 396
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG+ P++ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 454
Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
NKW A + G +N + S+I K ++ +E M+ +G+ P
Sbjct: 455 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ ++ G C K+D L ++ G K N L+ YC++ R+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 308 ETLTKCNQSPEVLLH 322
+ + SP+++ +
Sbjct: 570 KEMESSGVSPDIITY 584
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LFE+MV KPN TY+ I+G+ G +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKM 527
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K + ++ G N TY +LI+G K + ++EM S G+ P I +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+GL R+ K + G +I + ++ C+ D+ + + L
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 73/299 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------------- 157
Y +IA K Q + AM V +M G+ PD +NS++ SG
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 158 ------DVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSS---- 191
DVVT A +F+ M + KP TY + G+++
Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGAL 352
Query: 192 -------------------------------LGNVDAMNKWYAANIAAGFSVNVQTYESL 220
G VD ++ G + N TY ++
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I K+ + ++E+M+ G+ P + ++ GLC K +R + + +L G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+N ++ +C+ GRV E E+ E + + P V+ ++ +I Y L+ ++D+
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT--YNTLINGYCLAGKMDE 529
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +N+LI +G + A+ L MVS KPN+ TY I+G+
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYSTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ + ++G S ++ TY ++ G + R + Y + G +
Sbjct: 557 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC + D + L K+ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 2/192 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G P+ +N L+ AL L +M P+ +Y I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + FLK + G + + L+ C+ GR E +
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 308 ETLTKCNQSPEV 319
+++TK PE+
Sbjct: 325 DSMTKRGLKPEI 336
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 5/227 (2%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+H+ G PD + ++I GD A S + M+ P+ TY++ I+
Sbjct: 181 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD-RGILPDVVTYNSIIA 239
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+D + + G + TY S++HG + F ++M S G+ P
Sbjct: 240 ALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP 299
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +++ LC + + + G K L++ Y G + E+ L
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359
Query: 308 ETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + + P+ H+ FS +I YA ++D +M +QGL+
Sbjct: 360 DLMVRNGIHPD---HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 27/169 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV--SSEEYKPNSKTYDA 184
A HVF + +G N + A + A+S + M ++E P+ TY
Sbjct: 34 ARHVFDELLRRGRGASIYGLNRAL-ADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGI 92
Query: 185 FIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSV 233
I GF++LGNV I GF V+ + L+ G R D++
Sbjct: 93 LIGCCCRAGRLDLGFAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL---GGG 279
D M LG IP++ +L+GLC + L + GGG
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGG 191
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K+ + A+ +F ME+ G+ PD +N ++ + A L+ + +
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY-VRI 607
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + TY+ + G D + + + +T+ +I LK
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + S G++P+ + E + + L+ + + G ++ M +
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFI 727
Query: 291 VKCYCELGRV 300
V+ + G +
Sbjct: 728 VRELLQRGEI 737
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 3/247 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ F+++ LI L + + L R+ ++KG + L Y ++ K ++
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRM--VVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + ME I+P ++N++I A +V AL+LF M ++ +PN TY++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSL 297
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I + G ++ + I + NV T+ +LI +K ++ Y+EM+ I
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I ++ G C +LD K + ++ N L+K +C+ RVDE E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 306 QLETLTK 312
+++
Sbjct: 418 LFREMSQ 424
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY+ I
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 403
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF VD + + G N TY +LIHG +AR+ D+ +++M+S G++
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL 463
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC K++ ++L + + +++ C+ G+V++ +
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
+L+ P V+ + SG R
Sbjct: 524 FCSLSLKGVKPNVVTYTTMMSGFCR 548
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 9/298 (3%)
Query: 60 DSVDIFA--FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLI 115
D+V++F S F + L S+ K + L L + ++ G L Y+ LI
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEE 174
+ + A+ V M G +PD NSL+ C G+ ++ A+SL MV
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG-FCHGNRISDAVSLVGQMVEMG- 181
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y+P+S T++ I G + G ++ TY +++G K D D
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++M I P + I +++ LC + ++ + + G + N L++C
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C GR + L + + +P V+ FS +I + +L + E M K+ +
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A VF M + G+ PD ++ L+ +G V TAL +FE +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ 493
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY+ I G G V+ + + G NV TY +++ G +
Sbjct: 494 RSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + EM G +P
Sbjct: 553 EEADALFREMKEEGPLP 569
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 1/152 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V M +F M +G+ ++ + +LI + + A +F+ MV
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G V+ + + ++ TY +I G KA
Sbjct: 459 S-DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + + G+ P++ ++ G C +
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y ++A+ + + A + +M G+ P A N LI A C G V L +F +
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF-LE 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+S TY ISG G +D K + + + V TY SLI+G +++
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN 242
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R+ EEM S GI P++ +++GLC + + + ++ G + N
Sbjct: 243 VDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ C+ ++ E E L+ + P+ L+
Sbjct: 303 LITGLCKEQKIQEAVELLDRMNLQGLKPDAGLY 335
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V + +F M +G PDS + +LI G + A LF MV ++ P TY
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTY 230
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMM 241
+ I+G NVD ++ + G NV TY SL+ G K R +++ F E MM
Sbjct: 231 TSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMM 289
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P++ ++ GLC +K+ L + G K + + K++ +C + +
Sbjct: 290 ARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFR 349
Query: 302 ELEEQLETLTKCNQSPEVL 320
E L+ + +P L
Sbjct: 350 EAANFLDEMILGGITPNRL 368
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ + + A +FT M + P + SLI S +V A+ E M
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM- 253
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY + + G G + + +A G N+ TY +LI G K +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-------WKIN 283
+ M G+ P + KV+ G CA K +FL ++ GG W I+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 284 ENMAQKLVKCYC 295
+ ++V+ C
Sbjct: 374 VKTSNEVVRGLC 385
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGD 158
M +G + Y LI K Q + A+ + M QG+KPD+ ++ +I C S
Sbjct: 289 MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKF 348
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN------KWYAANIAAGFSV 212
A L E+++ PN T++ + + + N Y + + G SV
Sbjct: 349 REAANFLDEMILGG--ITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISV 406
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
V+T ESL+ K +F + +E+++ G IPS
Sbjct: 407 EVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPS 442
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ + + + A V M +G P+ V+N+LI + + +
Sbjct: 332 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 391
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MV S+ S TY+ I G+ G D + ++ GF+VN +
Sbjct: 392 GSLNKAIEIKDLMV-SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ S+I FDS RF EM+ + P +L ++ GLC K + L
Sbjct: 451 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 510
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ ++ + L+ CE G++DE
Sbjct: 511 NKGFVVDTRTSNALLHGLCEAGKLDE 536
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ PD +F + I A G V A+ LF M PN T++ I G G D
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD 325
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + TY L+ G +A+ +EM G P++ + ++
Sbjct: 326 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 385
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ L++ ++ G + + L+K YC+ G+ D E L+ +
Sbjct: 386 DSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + F M ++ ++P++ V+N LI A SG + AL L E M
Sbjct: 626 YSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM- 684
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PNS TY + I G S + V+ + G NV Y +LI G K
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 744
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
V+ EM S + P+ I V+ G AR
Sbjct: 745 VKVECLLREMHSKNVHPN-KITYTVMIGGYAR 775
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 3/215 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + +G D +N+LI C + A + MV KP++ TY I
Sbjct: 537 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 595
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ V+ +++ G +V TY +I G KA + F++EMMS +
Sbjct: 596 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 655
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + ++ C +L + + G N L+K + RV+E +
Sbjct: 656 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLL 715
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
E + P V ++ +I Y ++ VE
Sbjct: 716 FEEMRMEGLEPNVF--HYTALIDGYGKLGQMVKVE 748
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 13/259 (5%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI S +++ S KA + + + K L S Y LI K
Sbjct: 373 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQA 429
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 430 DNAERLLKEMLSIGFNVNQGSFTSVICL-LCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 488
Query: 185 FISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISG G + A+ W+ + GF V+ +T +L+HG +A D R +E++
Sbjct: 489 LISGLCKHGKHSKALELWFQF-LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 547
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G + ++ G C ++KLD FL ++ G K + L+ C L ++++
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---CGLFNMNKV 604
Query: 304 EEQLETLTKCNQS---PEV 319
EE ++ C ++ P+V
Sbjct: 605 EEAIQFWDDCKRNGMLPDV 623
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A +F M +G++P+ +
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 733 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 792 KGIVPDSITYKEFIYGYLK 810
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 4/236 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + Y+ LI + V A+ + + G+ PD ++ +I C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ F+ M+S + +PN+ Y+ I + G + + G S N
Sbjct: 636 AERTEEGQEFFDEMMS-KNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 694
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + +EEM G+ P++ +++G ++ +V+ L+ +
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 754
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
N+ ++ Y G V E L + + P+ + + F G ++
Sbjct: 755 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLK 810
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 73 SWDALITSLQS-SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ +LI + S ++A+L+ E + ++G E + Y LI GK+ + +
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFE---EMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 751
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M ++ + P+ + +I G+V A L M + P+S TY FI G+
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLK 810
Query: 192 LGNV 195
G V
Sbjct: 811 QGGV 814
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ CLI+ K +P A+ +F M +G KPD FNSLI LC D + AL L M
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG-LCEVDEIKHALWLLRDM 520
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+S E N+ TY+ I+ F G + K + G ++ TY SLI G +A +
Sbjct: 521 IS-EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +E+M+ G PS ++ GLC ++ F K ++ G +
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 290 LVKCYCELGRVDE 302
L+ C GR+++
Sbjct: 640 LINGLCRAGRIED 652
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 4/282 (1%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L LE D KG + + Y L+ K+ + A +V M A G+KP++ FN LI
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
A + A+ +F M + KP+ T+++ ISG + + I+ G
Sbjct: 467 SAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N TY +LI+ L+ + + EM+ G +++GLC ++D+ +S
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ +L G + L+ C G V+E E + + +P+++ F+ +I
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT--FNSLING 643
Query: 331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESWFIWKVGF 372
+ R++D ++ +G+ + + SW + K GF
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW-LCKGGF 684
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 6/176 (3%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S + P T+ + F ++ +D+ G N Y++LIH K +
Sbjct: 210 SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 269
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ EEM +G +P V+ GLC +++ + +L G+ ++ L+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM 329
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
C++GRVD ++ + K PE+++ F+ +I + RLDD + + M
Sbjct: 330 NGLCKIGRVDAAKDLFYRIPK----PEIVI--FNTLIHGFVTHGRLDDAKAVLSDM 379
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 8/242 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ + M G PD+ FN +I LC D + + +
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRM 313
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY ++G +G VDA + + + +LIHG +
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP----EIVIFNTLIHGFVTHGRL 369
Query: 231 DSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M+ S GI+P + ++ G + L + G K N
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV +C+LG++DE L ++ P + F+ +I + R+ + M +
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTV--GFNCLISAFCKEHRIPEAVEIFREMPR 487
Query: 350 QG 351
+G
Sbjct: 488 KG 489
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 1/165 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
GI PD +NSLI G V AL + M ++ KPN +Y + GF LG +D
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM-RNKGCKPNVYSYTILVDGFCKLGKIDE 442
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
A G N + LI K + EM G P + ++
Sbjct: 443 AYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS 502
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GLC ++ L+ ++ G N L+ + G + E
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ V M +G KP+ + L+ G + A ++ M S++ KPN+ ++
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM-SADGLKPNTVGFN 463
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
IS F + + + G +V T+ SLI G + + +M+S
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 523
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G++ + ++ R ++ + + ++ G ++E L+K C G VD+
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Query: 304 EEQLETLTKCNQSP 317
E + + +P
Sbjct: 584 RSLFEKMLRDGHAP 597
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 3/168 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
KP+ +FN+LI + G + A ++ MV+S P+ TY++ I G+ G V
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ G NV +Y L+ G K D EM + G+ P+ ++
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
C ++ + + G K + L+ CE VDE++ L
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE---VDEIKHAL 514
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S S + LI L S + +E++ + +L+G+ + + LI + + +
Sbjct: 598 SNISCNILINGLCRSG--MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++A+GI PD+ FN+L+ + LC G V L + + PN +T+ +
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLM-SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Query: 190 SSLGNVDAMNKWYAA 204
+D + AA
Sbjct: 715 IPQETLDRRRFYNAA 729
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V M+ +G+K + ++ +I + D A ++FE MV
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E KP+ Y+ IS F +GN+D + +T+ +IHG K+ D
Sbjct: 547 -KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDM 605
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G +P++ ++ GL +R++++ L + G NE+ K+
Sbjct: 606 RRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 665
Query: 291 VKCYCELG 298
++ Y +G
Sbjct: 666 MQGYASVG 673
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 707 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 762
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 763 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 822
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++GI P + +L L +R + V + K ++ G ++ A
Sbjct: 823 EEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 882
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
KC C++ EL E L+ + S H F
Sbjct: 883 KCLCKIEASGGELTETLQKTFPPDWSSHHHHHGF 916
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+ ALS M
Sbjct: 311 EFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 370
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GFS G+ +A + W+ ++N Y +I+ + +
Sbjct: 371 -KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + EM GI I I +++G
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMDG 458
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ VF M G P FN LI + + A+ + + M + N TY +
Sbjct: 608 SLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG-VSANEHTYTKIM 666
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G++S+G+ +++ G V++ TYE+L+ K+ S +EM + I
Sbjct: 667 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 726
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ + +++G R + ++ + G K + + + + G ++ +
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT 786
Query: 307 LETLTKCNQSPEV 319
+E + P +
Sbjct: 787 IEEMEALGVKPNI 799
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 12/291 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI SL S K L L +++ G + + Y LI A +
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+ P+ +N+LI G + A+ + E+M S + PN++TY+ I G+
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNELIKGYCKS 441
Query: 193 GNVDAM---NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
AM NK + +V TY SLI G ++ +FDS R M G++P
Sbjct: 442 NVHKAMGVLNKMLERKVLP----DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++ LC ++++ L G N M L+ YC+ G+VDE LE
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
+ N P L F+ +I +L + +M K GL + D
Sbjct: 558 MLSKNCLPNSLT--FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT 606
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
D+VD+ S+ +++ LI S+ KA VL L++ + + + Y
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD---VVTYNS 467
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI + N A + + M +G+ PD + S+I + S V A LF+ + +
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL-EQK 526
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN Y A I G+ G VD + ++ N T+ +LIHG
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E+M+ +G+ P++ ++ L D S + +L G K + + ++
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
YC GR+ + E+ + + + SP+ L +S +I+ Y
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPD--LFTYSSLIKGYG 683
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 3/231 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM V M + + PD +NSLI SG+ +A L +M + P+ TY
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM-NDRGLVPDQWTY 500
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I V+ + + G + NV Y +LI G KA D E+M+S
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+P+ ++ GLCA KL + ++ G + + L+ + G D
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDH 620
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + + P+ H ++ I+ Y RL D E + +M + G+S
Sbjct: 621 AYSRFQQMLSSGTKPDA--HTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+ ++G+ LGNV+ N++ + + AG + TY SLI G + +D DS +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ EM G + ++ GLC R++D
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 5/217 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ NV A + + G+ PD + SLI D+ +A +F M + + N
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-PLKGCRRNE 288
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I G +D AM+ + F V+TY LI + +
Sbjct: 289 VAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT-VRTYTVLIKSLCGSERKSEALNLVK 347
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM GI P+I +++ LC++ K ++ + L +L G N L+ YC+ G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+++ + +E + SP ++ +I+ Y S+
Sbjct: 408 MIEDAVDVVELMESRKLSPNT--RTYNELIKGYCKSN 442
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 107/270 (39%), Gaps = 24/270 (8%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
+ +++ALI L + K +LE ++ K+ G + + LI K + A
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKI--GLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F M + G KPD+ + + I G ++ A + M P+ TY + I G+
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM-RENGVSPDLFTYSSLIKGY 682
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR------------------DFD 231
LG + G + T+ SLI L+ + +FD
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFD 742
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV--KSFLKFLLGGGWKINENMAQK 289
+V E+M+ + P+ EK++ G+C L RV K F G +E +
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL-RVAEKVFDHMQRNEGISPSELVFNA 801
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ C C+L + +E + ++ + P++
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 3/215 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
V+ M + P+ +N ++ G+V A +V + P+ TY + I G
Sbjct: 204 QVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG-LDPDFFTYTSLIMG 262
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ ++D+ K + G N Y LIHG AR D + +M P+
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++ LC + + +K + G K N + L+ C + ++ E L
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 309 TLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVE 341
+ + P V+ + +G + + D +D VE
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ D +FN++I +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 198 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ +++M+ I P I ++ G C +LD+ K +F+
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + + L+K +C+ RV++ E
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD +NSLI + A +FE MVS + + P+ TY+ I
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 333 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC---LDE 110
IK ++D DIF +NS LI KA+ + E+ + K C LD
Sbjct: 282 IKRSIDP-DIFTYNS-------LINGFCMHDRLDKAKQMFEFMVSK------DCFPDLDT 327
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 388 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G + L
Sbjct: 447 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTL 506
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 507 IRAHLRDGDKAASAELIREMRSC 529
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 9 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 124
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I +++ LC R +D + K + G + N L+ C C GR + + L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 309 TLTKCNQSPEVL 320
+ + +P ++
Sbjct: 245 DMIEKKINPNLV 256
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ V M + GI PD++ + L+ G+V A+ L E M Y N+
Sbjct: 118 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKM-EDHGYPSNT 176
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G LG+++ ++ + G + N TY L+ + K R D + +E
Sbjct: 177 VTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDE 236
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ G P++ +L G C + D + + L G+K N L++C C GR
Sbjct: 237 IIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGR 296
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+E L + +++P V+ ++ +I A R + + M K F+
Sbjct: 297 WEEANSLLAEMDGGDRAPSVVT--YNILINSLAFHGRTEQALQVLKEMSKGNHQFR 350
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + ++ +++A I SL + K +
Sbjct: 352 TATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGSLCEHNSKVQE---A 407
Query: 95 WRLDKMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + + L + C D Y +I + N A + M G PD+ +++LI
Sbjct: 408 FYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRG 467
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G A+ + IM SE KP ++A I G + D + + +
Sbjct: 468 LCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMP 527
Query: 213 NVQTYESLIHG 223
N TY L+ G
Sbjct: 528 NETTYAILVEG 538
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G NV L++ KA R E M+S GIIP ++ LC R +
Sbjct: 98 VTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNV 157
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
++ + G+ N LV+ C LG +++ + +E L + +P + F
Sbjct: 158 GYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSF 216
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 11/235 (4%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
++KG E L Y L+ K AM +F + A+G K + +N L+ C G
Sbjct: 238 IVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRW 297
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD----AMNKWYAANIAAGFSVNVQ 215
A SL M + P+ TY+ I+ + G + + + N F V
Sbjct: 298 EEANSLLAEMDGGDR-APSVVTYNILINSLAFHGRTEQALQVLKEMSKGN--HQFRVTAT 354
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-KLDRVKSFLKF 274
+Y +I K D V + +EM+ P+ + LC K+ ++
Sbjct: 355 SYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAI-GSLCEHNSKVQEAFYIIQS 413
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
L + + ++ C G + L +T+C P+ H +S +IR
Sbjct: 414 LSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDA--HTYSALIR 466
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 103/216 (47%), Gaps = 2/216 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ D +FN++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 273 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ Y++M+ I P I ++ G C +LD+ K +F+
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+ + L+K +C+ RV++ E ++
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 427
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD +NSL+ + A +FE MVS + + P+ TY+ I
Sbjct: 349 AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 523
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE--- 110
IK ++D DIF +NS L+ KA+ + E+ + K C +
Sbjct: 357 IKRSIDP-DIFTYNS-------LVNGFCMHDRLDKAKQMFEFMVSK------DCFPDVVT 402
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 463 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G N L
Sbjct: 522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 581
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 582 IRAHLRDGDKAASAELIREMRSC 604
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 3/211 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + + A+ + M G +P +SL+ C G ++ A++L + M
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQM 181
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V Y+P++ T+ I G + G N+ TY +++G K D
Sbjct: 182 VEMG-YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M + I + I +++ LC R +D + K + G + N
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ C C GR + + L + + +P ++
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 96 RLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R D + K +E+ L Y LIA K+ A V MEA+G PD+ FN
Sbjct: 660 RADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFN 719
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ V ALS + +M+ + PN TY+ I G S G + ++KW + +
Sbjct: 720 SLMHGYFVGSHVRKALSTYSVMMEAG-ISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKS 778
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY +LI G K + Y EM++ G++P ++ K+ +
Sbjct: 779 RGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQ 838
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ LK + G N + ++ C+L
Sbjct: 839 ARELLKEMGKRGVSPNTSTYCTMISGLCKL 868
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +++ M +GI D V+ L+ +GD+ A F++++ + PN TY A +
Sbjct: 315 ALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQV-PNVVTYTALV 373
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ + + NV TY S+I+G +K + +M ++
Sbjct: 374 DGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVV 433
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P+ V++GL K + K + G + N + LV +GR+ E++
Sbjct: 434 PNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 491
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G PD F+S+I LC G V L + PN TY +
Sbjct: 249 YRDMVMSGFDPDVVTFSSIINR-LCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLF 307
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
Y+ + G V++ Y L+ G KA D ++ ++ ++ +P++
Sbjct: 308 KANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC L + + +L N ++ Y + G ++E L +
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKM 427
Query: 311 TKCNQSP 317
N P
Sbjct: 428 EDQNVVP 434
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++M G+ PDS ++NSLI +G V +SL + + P+ + I
Sbjct: 79 AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 138
Query: 187 SGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
F +G + +A ++ S++ TY ++I G + D +F EM+ +G
Sbjct: 139 HSFCKVGRLS-----FAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMG 193
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
I+P +++G C R K+ +
Sbjct: 194 ILPDTVSYNTLIDGFCKVGNFVRAKALV 221
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 74 WDAL-ITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVF 131
WD + L S K ++ +W M KG E + + ++ K + + ++
Sbjct: 539 WDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLW 598
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M++ GIKP S + +++ LC +G + A+ + M+ E + PN TY F+ S
Sbjct: 599 DKMKSCGIKP-SLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSS 656
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
DA+ K + ++ G ++ Q Y +LI K +M + G IP
Sbjct: 657 KHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTV 716
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G + + S ++ G N +++ + G + E+++ L +
Sbjct: 717 TFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEM 776
Query: 311 TKCNQSPE 318
P+
Sbjct: 777 KSRGMRPD 784
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAM 128
F++ +I L + K ++ +E + L G N LD + G+++ V
Sbjct: 437 FTYGTVIDGLFKAG--KEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK--- 491
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFIS 187
+ M ++G+ D + SLI GD AL+ E M E P + +Y+ IS
Sbjct: 492 GLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM--QERGMPWDVVSYNVLIS 549
Query: 188 GFSSLGNVDAMNKW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V A W Y G ++ T+ +++ K D + + + +++M S GI
Sbjct: 550 GMLKFGKVGA--DWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK 607
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
PS+ V+ LC K++ L ++
Sbjct: 608 PSLMSCNIVVGMLCENGKMEEAIHILNQMM 637
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+++ M A G+ PD N LI + G + A+SL V S ++ TY+ ISG
Sbjct: 118 IYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS----IDTVTYNTVISGL 173
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G D ++ + + G + +Y +LI G K +F +E+ L +I
Sbjct: 174 CEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHT 233
Query: 250 PIL 252
+L
Sbjct: 234 ILL 236
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M GI PD+ +N+LI G+ V A +L + E + N T+ +
Sbjct: 182 AYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVD-----EISELNLITHTILL 236
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S + N+ A+ + Y + +GF +V T+ S+I+ K EM + +
Sbjct: 237 SSYY---NLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVY 293
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++ L + ++ G ++ + L+ + G + E E+
Sbjct: 294 PNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKT 353
Query: 307 LETLTKCNQSPEVLLH 322
+ L + NQ P V+ +
Sbjct: 354 FKMLLEDNQVPNVVTY 369
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 177 PNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVD 234
P+S+ +++ I F+ G V D ++ Y+ IA G S +V LIH K ++
Sbjct: 93 PDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAIS 152
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++S+ + V+ GLC D FL ++ G + L+ +
Sbjct: 153 LLRNRVISIDTVT----YNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGF 208
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
C++G + ++ +++ N +L S L+A+ + D+
Sbjct: 209 CKVGNFVRAKALVDEISELNLITHTIL--LSSYYNLHAIEEAYRDM 252
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A+ + ME GI PD +NSLI SG A + M E Y P+
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY-PDV 256
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++A I G V ++Y I ++ TY LI+G D + +
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G P + ++ G C +K++ + G N L++ YC G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
++ EE + C P ++ +
Sbjct: 377 LNVAEEIFRRMVFCGVHPNIITY 399
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + M + I PD FN+LI AC+ G V A +E M+ P+ TY I
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR-RSLDPDIVTYSLLI 298
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +D + + ++ G +V TY LI+G K++ + + + EM G++
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ +++G C KL+ + + ++ G N L+ C+ G++++
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 307 LETLTKCNQSPEVLLH 322
L + K +++ +
Sbjct: 419 LADMQKNGMDADIVTY 434
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V M +F M +G+ ++ + LI +G + A +F MV
Sbjct: 329 YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY+ + G G ++ A G ++ TY +I G KA +
Sbjct: 389 FCGVH-PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
Y + G++P I ++ GL
Sbjct: 448 ADAWDIYCSLNCQGLMPDIWTYTTMMLGL 476
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A +F M G+ P+ +N L+ +G + AL + M
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM- 422
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ TY+ I G G V DA + + + N G ++ TY +++ G K
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN-CQGLMPDIWTYTTMMLGLYKKGL 481
Query: 230 FDSVDRFYEEMMSLGIIPS 248
D + +M GI+P+
Sbjct: 482 RREADALFRKMKEDGILPN 500
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 3/189 (1%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+L LF MV P+ + +S S + D + + G N+ T L+
Sbjct: 65 SLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILL 123
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + F +M+ LG PSI +L G C ++ ++G G+K
Sbjct: 124 NCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYK 183
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N + ++ C+ +VD + L + K P+V+ ++ +I S R D
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVT--YNSLISGLCSSGRWSDAT 241
Query: 342 YSVGRMGKQ 350
V M K+
Sbjct: 242 RMVSCMTKR 250
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY+ I
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 402
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G N TY +LI G +A D D + +++M+S G+
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC KL++ ++L + + +++ C+ G+V++ +
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
+L+ P V+++ SG R
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCR 547
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 6/250 (2%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I +NV A+++FT M+ +GI+P+ +NSLI CLC
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 301
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 333 LSDRLDDVEY 342
L L EY
Sbjct: 481 LEKALVVFEY 490
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ +G + L
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL---IDRMVARGCQPDLFT 222
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++ ++I A +V AL+LF M
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM- 281
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I + G ++ + I + NV T+ +LI +K
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQ 423
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + +P A+ V M G +PD +SL+ C G ++ A++L + M
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQM 176
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E Y+PN+ T++ I G +A G ++ TY ++++G K D
Sbjct: 177 FVME-YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++M I + I +++ LC + ++ + + G + N
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L++C C GR + L + + +P V+ FS +I + +L + E M K
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIK 353
Query: 350 QGL 352
+ +
Sbjct: 354 RSI 356
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 1/152 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V M +F M +G+ ++ +N+LI +GD A +F+ MV
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 457
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G G ++ + + ++ TY +I G KA
Sbjct: 458 S-DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 516
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + + G+ P++ I ++ G C +
Sbjct: 517 EDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF ++ ++PD +N +I +G V LF +S + KPN Y I
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF-CSLSLKGVKPNVIIYTTMI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF G + + + G N TY +LI L+ D + +EM S G +
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V+ L R KS+L+ L
Sbjct: 603 GDASTISMVINMLHDGR---LEKSYLEML 628
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+++ MEA IK + +FN++I + V A+ LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I+ + G ++ + + + NV T+ +LI K
Sbjct: 285 ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ +EEM+ I P ++ G C +LD K KF++ N L
Sbjct: 345 VEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ +C+ RV++ E +++
Sbjct: 405 INGFCKCKRVEDGVELFREMSQ 426
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + I PD+ +N LI + A +F+ MVS ++ PN +TY+ I+GF
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCK 412
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + + G N TY ++I G +A D DS +++M+S + I
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L GLC+ KLD K+L ++N + +++ C+ G+V E
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 7/319 (2%)
Query: 27 LCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA--FNSSQFSWDALITSLQSS 84
LC + S +S++ +L+ +S I D+VD+F S F L S+
Sbjct: 33 LCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSA 92
Query: 85 SPK--KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
K K +LV+ G L Y+ I + + A+ V M G +PD
Sbjct: 93 VAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPD 152
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+SL+ S + A++L + MV YKP++ T+ I G
Sbjct: 153 IVTLSSLLNGYCHSKRISDAVALVDQMVEMG-YKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ G ++ TY ++++G K D D +M + I ++ I +++ LC
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKY 271
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
R ++ + G + N L+ C C GR + L + + +P V+
Sbjct: 272 RHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVT- 330
Query: 323 FFSGIIRLYALSDRLDDVE 341
F+ +I + +L + E
Sbjct: 331 -FNALIDAFFKEGKLVEAE 348
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 4/185 (2%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y LI K + V + +F M +G+ ++ + ++I +GD +A +F+
Sbjct: 398 IQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFK 457
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
MVS+ + TY + G S G +D + + +N+ Y ++I G KA
Sbjct: 458 QMVSN-RVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKA 516
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
V ++ SL I P + ++ GLC++R L + + G N
Sbjct: 517 ---GKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573
Query: 288 QKLVK 292
L++
Sbjct: 574 NTLIR 578
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ++ ++ + ++N++I +G V A LF S KP+ TY+ I
Sbjct: 487 ALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF----CSLSIKPDVVTYNTMI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG S + + + G N TY +LI +L+ D + +EM S G +
Sbjct: 543 SGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFV 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V L R LD KSFL L
Sbjct: 603 GDASTISLVTNMLHDGR-LD--KSFLNML 628
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWR 96
N L++ L + +K ++ +D+ ++ ++++++I+ L + K+A VL+
Sbjct: 299 NTLVNGLCKA--GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ + N Y LI+ K V A + + ++GI PD FNSLI +
Sbjct: 357 ITRDCSPNTVT---YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQ 215
+ A+ LFE M S+ +P+ TY+ I S G +D A+N ++ G + +V
Sbjct: 414 RNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVI 471
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + ++EM G+ + +++GLC R+++ + +
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+ G K ++ L+ +C G + + + ++ +T P+++ + SG+ +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+V++ A++ M Q G PD FN+L+ +G V A+ + ++M+ E Y P
Sbjct: 273 GRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ-EGYDP 328
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY++ ISG LG V + I S N TY +LI K +
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ S GI+P + +++GLC R + + G + +E L+ C
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 298 GRVDE---LEEQLETLTKCNQS 316
G++DE + +Q+E L+ C +S
Sbjct: 449 GKLDEALNMLKQME-LSGCARS 469
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ LI SL S L + +++ L G + Y LI K A +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME--LSGCARSVITYNTLIDGFCKANKTREAEEI 492
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ME G+ +S +N+LI S V A L + M+ E KP+ TY++ ++ F
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM-EGQKPDKYTYNSLLTHFC 551
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++ A + G ++ TY +LI G KA + + + GI +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH 611
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLL 276
V++GL +RK + + +L
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREML 637
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GIKPD + FN LI A + + A+ + E M S P+ KT+ + G+ G
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTVMQGYIEEG 238
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPIL 252
++D + + G S + + ++HG K + F +EM + G P
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ GLC + + +L G+ + ++ C+LG V E E L+ +
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 313 CNQSPEVLLH 322
+ SP + +
Sbjct: 359 RDCSPNTVTY 368
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 3/211 (1%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+N AM +F M ++G +PD +N LI + G + AL++ + M S + +
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR-SVI 471
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I GF + + G S N TY +LI G K+R + + ++M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G P +L C + + ++ + G + + L+ C+ GRV
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 301 DELEEQLET--LTKCNQSPEVLLHFFSGIIR 329
+ + L + + N +P G+ R
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KPD+ +N ++ L G+ + + + +S KP+ T++ I +
Sbjct: 149 GLKPDTHFYNRML-NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G + +T+ +++ G ++ D D R E+M+ G S + ++
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVH 267
Query: 258 GLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C +++ +F++ + G+ ++ LV C+ G V E ++ + +
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 317 PEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
P+V + SG+ +L + + ++ ++ + R
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 57/140 (40%)
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LS+ + M+ KP++ Y+ ++ ++ + +A G +V T+ LI
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+A E+M S G++P V++G LD + ++ G
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257
Query: 283 NENMAQKLVKCYCELGRVDE 302
+ +V +C+ GRV++
Sbjct: 258 SNVSVNVIVHGFCKEGRVED 277
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 28/306 (9%)
Query: 5 CRVLSVAKSSRYLLMPLRF--DRLLCNTNTNS----TSVSSSNPLISRLLQVPVSQIKTT 58
CR LS A S+ +M L + D ++ NT N VS + L+ R++++ T
Sbjct: 136 CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLIT 195
Query: 59 LDS-VDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L++ V+ N LI + + + ++ L+ M K ++ L
Sbjct: 196 LNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL--------- 246
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYK 176
AM + ME + IK D AV S+I LC G + A +LF M + +K
Sbjct: 247 ---------AMELLRKMEERNIKLD-AVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFK 295
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ TY+ I GF + G D K I S NV T+ LI +K D+
Sbjct: 296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EMM GI P+ +++G C +L+ + ++ G + L+ YC+
Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCK 415
Query: 297 LGRVDE 302
R+D+
Sbjct: 416 ANRIDD 421
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+GKV + A+ + M G +P+ + ++ SG A+ L M
Sbjct: 203 LCLNGKVSD---AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + GF ++ TY +LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL LK ++ G N L+ +
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ R++E + ++ + P+++ F+ +I Y ++R+DD
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMT--FNILINGYCKANRIDD 421
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 3/234 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ + + +A + G +PD+ +FN+L+ V AL L + MV +KP
Sbjct: 135 RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM-GHKPTL 193
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++G G V + GF N TY +++ K+ +
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M I +++GLC LD + + G+K + L+ +C GR
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
D+ + L + K SP V+ FS +I + +L + + + M ++G++
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVT--FSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ ++ +N+L+ SG +
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MV S +P+ +Y + G G ++ + + + +++ Y +I
Sbjct: 457 AKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIII 515
Query: 222 HGSLKARDFD 231
HG A D
Sbjct: 516 HGMCNASKVD 525
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M ++G PD FN LI + + L LF M S N+ TY+ +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM-SLRGVIANTVTYNTLV 445
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ K + ++ ++ +Y+ L+ G + + + ++ +
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I I ++ G+C K+D L G K++ ++ C + + +
Sbjct: 506 LDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADIL 565
Query: 307 LETLTKCNQSPEVLLH 322
+T+ +P+ L +
Sbjct: 566 FRKMTEEGHAPDELTY 581
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +++ A+ VF ME +GI+ D+ +N+LI SG A L MV + PN
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDPNV 254
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I F GN+ Y I NV TY SLI+G ++
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKF----LLGGGWKINENMAQKLVKCY 294
M+S G P + ++ G C +++ D +K F + L+G + N L+ Y
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT-----LIHGY 369
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G+++ ++ + C SP+++ +
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTY 397
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFE 167
+ LI K N+ A +++ M + + P+ +NSLI C C GD A +F+
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD---AKYMFD 313
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MVS + P+ TY+ I+GF V+ K + G + TY +LIHG +A
Sbjct: 314 LMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 372
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + + M+ G+ P I +L+ LC K+++ ++ L ++
Sbjct: 373 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 432
Query: 288 QKLVKCYCELGRVDELEEQ---LETLTKCNQSPEVLLHF--FSGIIR 329
+++ C R D+L+E +LT+ P+ + + SG+ R
Sbjct: 433 NIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCR 476
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF ++ T SL++G + F + M G +P++ I V+ GLC R L+
Sbjct: 144 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 203
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ G + + L+ GR + L + K P V+ FF+ +I
Sbjct: 204 LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI--FFTALI 261
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A SLF M+ S P+ + ++ + + D + Y G S ++ ++ LI
Sbjct: 63 AFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
H + +MM LG PSI L +L G C + S + + G G+
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 181
Query: 282 INENMAQKLVKCYCE 296
N + ++ C+
Sbjct: 182 PNVVIYNTVINGLCK 196
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 18/301 (5%)
Query: 5 CRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRL-LQVPVSQIKTTLDSVD 63
CR L +A S+ ++ L ++ NT T ST LI+ L L+ VS+ +D +
Sbjct: 136 CRKLCLAFSAMGKIIKLGYEP---NTITFST-------LINGLCLEGRVSEALELVDRMV 185
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQ 122
+ + L+ L S + ++L +DKM++ G + Y ++ + K
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLL---IDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
AM + ME + IK D AV S+I LC G + A +LF M + N T
Sbjct: 243 QTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIIT 300
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I GF + G D K I + NV T+ LI +K + ++EM+
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
GI P +++G C LD+ + ++ G N L+ YC+ R+D
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 420
Query: 302 E 302
+
Sbjct: 421 D 421
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 5/211 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M + I P+ F+ LI + + G + A L + M+ P++ TY + I GF
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGF 378
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
++D N+ ++ G N++T+ LI+G KA D + +M G++
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C KL+ K + ++ N + L+ C+ G E E+ LE
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG---ESEKALEI 495
Query: 310 LTKCNQSP-EVLLHFFSGIIRLYALSDRLDD 339
K +S E+ + ++ II + ++DD
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDD 526
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ LSGK AM + M G +P++ + ++ SG A+ L M
Sbjct: 203 LCLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + G + N+ TY LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL + K ++ G + L+ +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ +D+ + ++ + P + F+ +I Y ++R+DD
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNI--RTFNILINGYCKANRIDD 421
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 1/215 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ D+ +N+LI G +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MVS + PN TY + G G + + + + +++ Y +I
Sbjct: 457 AKELFQEMVS-RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG A D + + G+ P + ++ GLC + L + + + G
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L++ + G + + +E L +C S
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 3/270 (1%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
+ K+ LVL LKG L + +I + + + A + G +P++
Sbjct: 99 AKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNT 158
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
F++LI G V AL L + MV +KP+ T + ++G G
Sbjct: 159 ITFSTLINGLCLEGRVSEALELVDRMVEM-GHKPDLITINTLVNGLCLSGKEAEAMLLID 217
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G N TY +++ K+ +M I +++GLC
Sbjct: 218 KMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
LD + + G N L+ +C GR D+ + L + K +P V+
Sbjct: 278 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT-- 335
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
FS +I + +L + E M +G++
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIA 365
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F +E ++ D ++N +I + V A LF + + KP KTY+ I
Sbjct: 492 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF-CSLPLKGVKPGVKTYNIMI 550
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + G + + TY LI L D + EE+ G
Sbjct: 551 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++ V++ L R KSFL L
Sbjct: 611 VDASTIKMVIDMLSDGR---LKKSFLDML 636
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ KG + L
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL---IDRMVAKGCQPDLVT 223
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A ++ ME ++P ++N++I + AL+LF+ M
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY + IS + G ++ + I + +V T+ +LI +K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I PSI ++ G C +LD K +F++ + L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQ 424
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I P ++SLI + A +FE MVS + P+ TY+ I
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLI 403
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G N TY LI G +A D D ++EM+S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + +++ C+ G+V++ +
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
L+ P+V+ + SG R
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCR 548
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + +P A+ V M G +P+ +SL+ S + A++L + M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y+PN+ T++ I G +A G ++ TY +++G K D
Sbjct: 179 VTG-YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M + P + I +++GLC + +D + K + G + N L
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P+V FS +I + +L + E M K+
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFT--FSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 351 GL 352
+
Sbjct: 356 SI 357
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 479 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 534
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 595 KEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 629
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEW-RLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ L+ L ++ +KA +V E+ + KM E + Y +I K V +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKM----EPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ++ +G+KPD +N++I G A +LF+ M + PNS Y+ I
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM-KEDGTLPNSGCYNTLIRARL 582
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQT 216
G+ +A + + GF+ + T
Sbjct: 583 RDGDREASAELIKEMRSCGFAGDAST 608
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 23/304 (7%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF-----SWDALITSLQSSSPK 87
N SV S LI +L+ +S SV +A N F +++ALI SL K
Sbjct: 86 NEASVKLSPALIEEVLK-KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESL----GK 140
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALS-GKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
Q L W L +K + E LI+ + + V A+ F ME G K +S+ F
Sbjct: 141 IKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDF 200
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS---SLGNVDAMNKWYA 203
N ++ S +V A +F+ M + ++P+ K+Y + G+ +L VD +N+
Sbjct: 201 NRMLDTLSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMK 259
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
GF +V Y +I+ KA+ ++ RF+ EM PS I ++ GL + +
Sbjct: 260 DE---GFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEK 316
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL-----EEQLETLTKCNQSPE 318
KL+ F + G+ + LV YC R+++ E +L+ + ++ +
Sbjct: 317 KLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYD 376
Query: 319 VLLH 322
++LH
Sbjct: 377 IILH 380
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 85/236 (36%), Gaps = 37/236 (15%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y +I K + A+ F ME + KP +F SLI +
Sbjct: 261 EGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLND 320
Query: 162 ALSLFEIMVSS-----------------------EEYK-----------PNSKTYDAFIS 187
AL FE SS + YK PN++TYD +
Sbjct: 321 ALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILH 380
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
L + + Y V TYE ++ D + ++EM G++P
Sbjct: 381 ---HLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLP 437
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
+ + ++ LC KLD + +L G + +M +L + + GR D++
Sbjct: 438 GMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKV 493
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 116/280 (41%), Gaps = 13/280 (4%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQN 123
F SS F+ L T +S + AQ V DKM K E + Y L+ G+ N
Sbjct: 193 FKMESSDFN-RMLDTLSKSRNVGDAQKVF----DKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ V M+ +G +PD + +I A + A+ F M KP+ +
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM-EQRNCKPSPHIFC 306
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I+G S ++ +++ + ++GF + TY +L+ ++ + + +EM
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P+ + +L L ++ R K + + + + +V+ +C R+D
Sbjct: 367 GVGPNARTYDIILHHLI---RMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMA 423
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV-EY 342
+ + + P +H FS +I ++LD+ EY
Sbjct: 424 IKIWDEMKGKGVLPG--MHMFSSLITALCHENKLDEACEY 461
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A+ M ++G PD +N+++ A G V A+ + +SS+ P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN-QLSSKGCSPVL 449
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G + G K A + TY SL+ G + D +F+ E
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+GI P+ ++ GLC R+ DR FL F++ G K NE L++ G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Query: 300 VDELEEQLETLTKCNQS 316
E E L L CN+
Sbjct: 570 AKEALELLNEL--CNKG 584
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 4/194 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +E G PD +N +I +G++ ALS+ + M S P+ TY+ +
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTIL 211
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + + +V TY LI + + + +EM G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G+C +LD FL + G + N +++ C GR + E+
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 307 LETLTKCNQSPEVL 320
L + + SP V+
Sbjct: 332 LADMLRKGFSPSVV 345
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 4/205 (1%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ AM V M + PD + LI A V A+ L + M P
Sbjct: 217 SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGCTP 272
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ ++G G +D K+ ++G NV T+ ++ + ++
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G PS+ ++ LC + L R L+ + G + N L+ +C+
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH 322
++D E LE + P+++ +
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTY 417
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G P FN LI G + A+ + E M +PNS +Y+ +
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PQHGCQPNSLSYNPLL 386
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +D ++ ++ G ++ TY +++ K + ++ S G
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCS 446
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + V++GL K + L + K + LV G+VDE
Sbjct: 447 PVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG L Y +I K A+ + M A+ +KPD+ ++SL+ G V
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ F +PN+ T+++ + G D + I G N +Y LI
Sbjct: 503 AIKFFH-EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561
Query: 222 HG 223
G
Sbjct: 562 EG 563
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 12/208 (5%)
Query: 147 NSLICACLCSGDVVTALSLF-----EIMVSSEEYKPNSKTYDAFISGFSSL--GNVDAMN 199
N L +C SG + + + L +++ S K S + F +L G ++
Sbjct: 28 NKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKFETLSSGYSNSNG 87
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +++ + F++ + + ++ + + +F E M+ G +P I ++ G
Sbjct: 88 NGHYSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGF 147
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C K + L+ L G G + ++ YC+ G E+ L L + + SP+V
Sbjct: 148 CRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAG---EINNALSVLDRMSVSPDV 204
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ ++ I+R S +L + RM
Sbjct: 205 VT--YNTILRSLCDSGKLKQAMEVLDRM 230
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ + V A+ F E GI+P++ FNS++ S A+ M+
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMI 546
Query: 171 SSEEYKPNSKTYDAFISGFSSLG 193
+ KPN +Y I G + G
Sbjct: 547 -NRGCKPNETSYTILIEGLAYEG 568
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + I P+ +NSLI + A +F +MVS ++ P+ TY+ I
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLI 387
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF V + + G N TY +LIHG +A D D+ +++M+S G+
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + + + + C+ G+V++ +
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507
Query: 307 LETLTKCNQSPEVLLH 322
+L+ P+V+ +
Sbjct: 508 FCSLSLKGVKPDVIAY 523
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 3/249 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+S+ +D + + ++ L+ L + + L R+ ++KG + L Y
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM--VVKGCQPDLVTY 208
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+I K A+++ ME I+ D +++++I + V AL+LF M
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-D 267
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
++ +P+ TY + IS + G ++ + + + NV T+ SLI K
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ ++EM+ I P+I ++ G C +LD + ++ + L+
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 292 KCYCELGRV 300
+C+ +V
Sbjct: 388 NGFCKAKKV 396
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 5/256 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
KK LV+ + + G L Y +I + + FA+ + M G P
Sbjct: 79 KKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL 138
Query: 147 NSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
NSL+ C G+ ++ A++L + MV Y+P++ T+ + G
Sbjct: 139 NSLLNG-FCHGNRISEAVALVDQMVEM-GYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G ++ TY ++I+G K + D +M I + I V++ LC R +
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + + G + + L+ C C GR + L + + +P V+ F+
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT--FN 314
Query: 326 GIIRLYALSDRLDDVE 341
+I +A +L + E
Sbjct: 315 SLIDAFAKEGKLIEAE 330
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 3/214 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEI 168
E++ L++ K++ + ME G+ + +N +I CLC ++ AL++
Sbjct: 67 EFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI-NCLCRRSQLSFALAILGK 125
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 126 MMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 184
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
E M+ G P + V+ GLC R + D + L + G + + +
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C+ VD+ + P+V +
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ LF MV S + P+ + +S + + D + + G S N+ TY +I
Sbjct: 49 AVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI 107
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + +MM LG PSI L +L G C ++ + + ++ G++
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 167
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV++ +F S+ +G+KPD +N++I G A +LF I + + P
Sbjct: 498 AGKVED---GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLF-IKMKEDGPLP 553
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+S TY+ I G+ A + + F+ + TY
Sbjct: 554 DSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY 593
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I P+ ++SLI + A + E+M+ ++ PN TY+ I
Sbjct: 342 AEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVVTYNTLI 400
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF VD + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 460
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+I +L+GLC KL + ++L
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+++FT ME +G++P+ ++SLI +CLC+ G A L M+ + PN T+ A
Sbjct: 272 ALNLFTEMENKGVRPNVITYSSLI-SCLCNYGRWSDASRLLSDMIE-RKINPNLVTFSAL 329
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F G + K Y I N+ TY SLI+G + E M+
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P++ ++ G C +++D+ + + G N L+ + + D +
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 306 QLETLTKCNQSPEVLLH 322
+ + P +L +
Sbjct: 450 VFKQMVSVGVHPNILTY 466
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ + +++++I +
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + G ++ + I + N+
Sbjct: 266 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ YEEM+ I P+I ++ G C +L K L+ +
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ RVD+ E +++
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M G +PD NSL+ C G+ ++ A++L + MV YKP++ T+ I G
Sbjct: 139 MMKLGYEPDIVTLNSLLNG-FCHGNRISDAVALVDQMVEMG-YKPDTVTFTTLIHGLFLH 196
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ G ++ TY ++++G K D D +M + I ++ I
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V++ LC R D + + G + N L+ C C GR + L + +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+P ++ FS +I + +L E
Sbjct: 317 RKINPNLVT--FSALIDAFVKKGKLVKAE 343
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +N+LI + V + LF M S N+ TY I GF + D
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ ++ G N+ TY L+ G K +E + + P I ++EG+C
Sbjct: 450 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 509
Query: 261 ARRK 264
K
Sbjct: 510 KAGK 513
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM++ + + G KPD ++N+++ A+ +++ M E +P+ T
Sbjct: 244 KNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM-KEEGVEPDQIT 302
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I G S G V+ + + AG+ + TY SL++G + + EEM
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEME 362
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P+ +L GLC R +D+ + + G K+ N LV+ + G+V
Sbjct: 363 ARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVA 422
Query: 302 ELEE 305
E E
Sbjct: 423 EAYE 426
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A +M G +PD+A + SL+ G+ + ALSL E M
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEM- 361
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ PN TY+ + G +D + Y ++G + Y +L+ +K+
Sbjct: 362 EARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ V L ++ G + ++ V+ CE GRVDE ++ ++ LT+ + P+ + F
Sbjct: 140 ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNF 199
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 5/291 (1%)
Query: 65 FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
N + +++ LI + P+++ +L+ L++ + + L+ K +
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
V A V ME G++PD+ +N++ + G+ V A S + E MV E+ KPN +T
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ G+ G V ++ N+ + SLI+G ++ D D +D M
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + V+ + +++ K ++ G K + + L K Y +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKK 383
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
EE LETL P V++ F+ +I + + +DD +M K G+S
Sbjct: 384 AEELLETLI-VESRPNVVI--FTTVISGWCSNGSMDDAMRVFNKMCKFGVS 431
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M G+KPD+ ++ L + + + A L E ++ E +PN + I
Sbjct: 349 AAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIV--ESRPNVVIFTTVI 406
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG+ S G++D + + G S N++T+E+L+ G L+ + + + M G+
Sbjct: 407 SGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVK 466
Query: 247 P 247
P
Sbjct: 467 P 467
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
++KM+ ++ + C I + G + V + M+ ++ + VFNSLI +
Sbjct: 247 VEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFV 306
Query: 155 CSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+V+ + E++ +E K + TY ++ +SS G ++ + + + AG
Sbjct: 307 ---EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ Y L G ++A++ + E ++ + P++ I V+ G C+ +D
Sbjct: 364 DAHAYSILAKGYVRAKEPKKAEELLETLI-VESRPNVVIFTTVISGWCSNGSMDDAMRVF 422
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ G N + L+ Y E+ + + EE L+ + C PE
Sbjct: 423 NKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPE 468
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P +AQ V + + G+ L Y L+A + + + +E G K
Sbjct: 56 IERGRPHEAQTVFKTLAET---GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK 112
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
DS FN++I A SG++ A+ + + P + TY+ I G+ G + ++
Sbjct: 113 LDSIFFNAVINAFSESGNMEDAVQAL-LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 201 WYAANIAAG---FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N++T+ L+ K + + ++M G+ P +
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 258 GLCARRKLDRVKSFL--KFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + R +S + K ++ K N +V YC GRV
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRV 276
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 82/192 (42%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K N+ A V+ M +GIKPD + + L GD A L E MV
Sbjct: 447 YTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMV 506
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+++ + P+ Y+ I G +GN+ ++ G + TY ++I G L+ F
Sbjct: 507 ATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQF 566
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ + PS+ ++ G +L++ + + G + N L
Sbjct: 567 KMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNAL 626
Query: 291 VKCYCELGRVDE 302
+ C+ G +DE
Sbjct: 627 LYGMCKAGNIDE 638
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 4/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F + A I P +N+LI SG++ A L E M + + P+ TY + GF
Sbjct: 396 LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF-PDVITYTTLVKGF 454
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPS 248
GN+ + Y + G + Y + G L+ D D R +EEM++ P
Sbjct: 455 VKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPD 514
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++GLC L + F + + G + +++ Y E G+ +
Sbjct: 515 LTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYD 574
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + P V+ +F +I +A + RL+ M K+G+
Sbjct: 575 EMLRKRLYPSVITYFV--LIYGHAKAGRLEQAFQYSTEMKKRGV 616
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ +M GI P FN+++ +C +GD+ ++ + + + + TY+ I+GF
Sbjct: 225 VYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIW-LEMKRRNIEFSEVTYNILINGF 283
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ +++ +GF+V ++ LI G K FD +EM++ GI P+
Sbjct: 284 SKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTT 343
Query: 250 PILEKVLEGLCARRKLDRVKSFL 272
+ LC ++D + L
Sbjct: 344 STYNIYICALCDFGRIDDARELL 366
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 16/181 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A M G FN LI G A + + M+
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ Y P + TY+ +I G +D + ++ A +V +Y +L+HG +K F
Sbjct: 336 NAGIY-PTTSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKF 390
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++++ + I PSI +++GLC L+ G ++ E M +L
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLE-----------GAQRLKEEMTTQL 439
Query: 291 V 291
+
Sbjct: 440 I 440
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 2/211 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M +G P N ++ S + A +++E M+ P T++ +
Sbjct: 191 FEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIE-HGIMPTVITFNTMLDSCF 249
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G+++ ++K + + TY LI+G K + RF+ +M G +
Sbjct: 250 KAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPY 309
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++EG C + D +L G + + C+ GR+D+ E L ++
Sbjct: 310 SFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM 369
Query: 311 TKCN-QSPEVLLHFFSGIIRLYALSDRLDDV 340
+ S L+H + + + S DD+
Sbjct: 370 AAPDVVSYNTLMHGYIKMGKFVEASLLFDDL 400
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 2/228 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
LD ML+ ++ C I + + + A ++ M++ G+KPD FN+L A
Sbjct: 447 LDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYA 506
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G TA + + + KPN +T ++G+ G ++ +++ G N+
Sbjct: 507 RIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 566
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
+ SLI G L D D V + M G+ P + ++ + + R +
Sbjct: 567 FVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD 626
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L GG + + L K Y G ++ E+ L + K P V+++
Sbjct: 627 MLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDA 184
A+ F M+ G+ P+ VFNSLI L D+ + ++M EE+ KP+ T+
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLM---EEFGVKPDVVTFST 606
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++ +SS+G++ + Y + G ++ + L G +A + + ++ +M G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDEL 303
+ P++ I +++ G C+ ++ + K + G G N + L+ + E + +
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKA 726
Query: 304 EEQLETLTKCNQSP 317
EE L+ + N P
Sbjct: 727 EELLKDMEGKNVVP 740
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 158/384 (41%), Gaps = 42/384 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 288 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 347
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L +++K ++ L + +I S + N+
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL--FNAIINASSESGNL 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L ++M+ E +PN +T +
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 185 FISGFSSLGNV-DAMNKWYA--------------------ANIAAGFSV----------- 212
+ + + + +A N Y A I + +
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525
Query: 213 ----NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
NV+T ++++G + + RF+ M LG+ P++ + +++G +D V
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ + G K + L+ + +G + EE + + P++ H FS +
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI--HAFSILA 643
Query: 329 RLYALSDRLDDVEYSVGRMGKQGL 352
+ YA + + E + +M K G+
Sbjct: 644 KGYARAGEPEKAEQILNQMRKFGV 667
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++T M GI PD F+ L +G+ A + M +PN Y ISG
Sbjct: 622 EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM-RKFGVRPNVVIYTQIISG 680
Query: 189 FSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ S G + AM + G S N+ TYE+LI G +A+ + ++M ++P
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVP 740
Query: 248 SIPILEKVLEG 258
+ ++ + +G
Sbjct: 741 TRKTMQLIADG 751
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 1/175 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++G++P +N ++ S + TA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L FE M + P+ T++ I+GF +D K + +V +Y ++I
Sbjct: 275 LRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIK 333
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
G L D R +EEM S GI P+ +L GLC K+ K+ LK ++
Sbjct: 334 GYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 1/210 (0%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
D + LI GK V ++ +F M+ G++ +NSL L G + A F
Sbjct: 186 DMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNK 245
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
MV SE +P TY+ + GF ++ +++ G S + T+ ++I+G + +
Sbjct: 246 MV-SEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFK 304
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D ++ + EM I PS+ +++G A ++D + + G + N
Sbjct: 305 KMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYS 364
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ C+ G++ E + L+ + + +P+
Sbjct: 365 TLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+++G+ D +N LI LC + + L + PN TY+ I
Sbjct: 247 AIELLDHMKSKGVDADVCTYNMLIHD-LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GFS+ G V ++ ++ G S N T+ +LI G + +F + + M + G+
Sbjct: 306 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L+GLC + D + F + G + ++ C+ G +DE
Sbjct: 366 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L ++K P+++ +S +I + R + V R+ + GLS
Sbjct: 426 LNEMSKDGIDPDIVT--YSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD + ++ +++ LI L +S+ K L+L +M+ NE Y LI
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---TYNTLING 307
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V A + M + G+ P+ FN+LI + G+ AL +F M+ ++ P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTP 366
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y + G D +Y G V TY +I G K D
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLL 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM GI P I ++ G C + K + + G N + L+ C +
Sbjct: 427 NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRM 486
Query: 298 GRVDE 302
G + E
Sbjct: 487 GCLKE 491
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV A + + G+ P+ ++++LI C G + A+ ++E M+
Sbjct: 441 YSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 500
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + T++ ++ G V ++ + G N +++ LI+G + +
Sbjct: 501 L-EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM +G P+ +L+GLC L + FLK L ++ M L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619
Query: 291 VKCYCELGRV 300
+ C+ G +
Sbjct: 620 LTAMCKSGNL 629
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/337 (19%), Positives = 123/337 (36%), Gaps = 43/337 (12%)
Query: 57 TTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACL 114
+ D + + + F++ +L+ L K L + K L + +D Y L
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGL----CKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL--------- 165
+ K N+ A+ +F M + I PDS + SLI G V A+
Sbjct: 620 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 679
Query: 166 --------------------------FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
F + + + P+ T +A I G+S +G ++ N
Sbjct: 680 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTN 739
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
N+ TY L+HG K +D + Y ++ GI+P ++ G+
Sbjct: 740 DLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGI 799
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C L+ LK + G +++ L+ C G ++ + ++ +T S +
Sbjct: 800 CESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDK 859
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
++ + + R + + M KQG+S +S
Sbjct: 860 --DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPES 894
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV M TS GI P++ F+ LI SG+ + A S+F+ M + P
Sbjct: 521 AGKVAEAEEFMRCMTS---DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH-P 576
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + + G G++ K+ + A +V+ Y +L+ K+ + +
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRK 264
EM+ I+P ++ GLC + K
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGK 663
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A GK + M+ + P A F +L+ C +G+V+ AL L +++S+
Sbjct: 939 LAKCGKADEATLLLRFMLKMK---LVPTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCG 994
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDS 232
K + +Y+ I+G + G++ + Y GF N TY++LI G L AR+ F
Sbjct: 995 LKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLL-ARETAFSG 1053
Query: 233 VDRFYEEMMSLGIIPSIPI 251
D +++++ G I S+ +
Sbjct: 1054 ADIILKDLLARGFITSMSL 1072
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 7/255 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + +++ALI S K L + + ++ KG Y L L G +N
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEA--KGLTPSEVSYGVL--LDGLCKNA 382
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
F A + M+ G+ + +I +G + A+ L M S + P+ TY
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTY 441
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I+GF +G + G S N Y +LI+ + R YE M+
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G ++ LC K+ + F++ + G N L+ Y G +
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 303 LEEQLETLTKCNQSP 317
+ +TK P
Sbjct: 562 AFSVFDEMTKVGHHP 576
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G +Q+ ++ +F M G P N+++ + + SG+ V+ S + M+ + P+
Sbjct: 137 GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLK-RKICPD 192
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I+ + G+ + + +G++ + TY +++H K F + +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G+ + ++ LC ++ + L+ + NE L+ + G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + L + SP
Sbjct: 313 KVLIASQLLNEMLSFGLSP 331
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 1/163 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M QGI P+S + LI GD+ TA + E M++ + PN A +
Sbjct: 881 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRAL 939
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G D + + ++ +L+H K + M + G+ +
Sbjct: 940 AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ GLCA+ + + + G G+ N + L++
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIR 1042
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 58/143 (40%)
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M + N YD I + G + + + GF+ +V T +++ +K+
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKS 171
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ SV F +EM+ I P + ++ LCA ++ ++ + G+
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231
Query: 288 QKLVKCYCELGRVDELEEQLETL 310
++ YC+ GR E L+ +
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHM 254
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSI 199
Query: 186 ISGFSSLGN----VDAMNKWYAANIAA-------------------------------GF 210
++G G+ +D + K N+ A G
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 377
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGL 399
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 426 FQEMVSHGVLPDVMTY 441
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 312 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 1/198 (0%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V+ V M VF ++ +G+ ++ ++ L+ SG + A LF+ MVS P+
Sbjct: 381 VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS-HGVLPDVM 439
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY + G G ++ + + + + + Y ++I G K + + +
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G+ P++ ++ GLC + L L+ + G N+ L++ + G +
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDL 559
Query: 301 DELEEQLETLTKCNQSPE 318
+ +E + C S +
Sbjct: 560 TASAKLIEEMKSCGFSAD 577
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 40/192 (20%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE---- 173
SGK++ A +F M + G+ PD + L+ +G + AL +FE + S+
Sbjct: 416 SGKIK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472
Query: 174 ------------------------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
KPN TY ISG G++ N
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 532
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G + N TY +LI L+ D + + EEM S G ++ V++ L +
Sbjct: 533 KMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLS-G 591
Query: 264 KLDRVKSFLKFL 275
+LD KSFL L
Sbjct: 592 ELD--KSFLDML 601
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 19/238 (7%)
Query: 73 SWDALIT-SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ LI S + +KA+ L+W + K + + Y+ +I K + A+ +F
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPD---VFSYSTVINDLAKAGKLDDALELF 207
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +G+ PD +N LI L D TA+ L++ ++ PN KT++ ISG S
Sbjct: 208 DEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSK 267
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD K + ++ TY SLIHG A + D + + E+ +
Sbjct: 268 CGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVT 327
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-------QKLVKCYCELGRVDE 302
+L G C + ++K L+ W+I E+ L+K E G++DE
Sbjct: 328 YNTMLGGFC---RCGKIKESLEL-----WRIMEHKNSVNIVSYNILIKGLLENGKIDE 377
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 15/257 (5%)
Query: 53 SQIKTTLDSVDIFAFNSSQ--FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
+IK +L+ I +S S++ LI L + K + + WRL + D+
Sbjct: 339 GKIKESLELWRIMEHKNSVNIVSYNILIKGLLENG-KIDEATMIWRL---MPAKGYAADK 394
Query: 111 YACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
I + G N V A+ V +E+ G D + S+I CLC + S
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII-DCLCKKKRLEEASNLVK 453
Query: 169 MVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+S + NS +A I G S LG + N G V +Y LI G
Sbjct: 454 EMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN---GCRPTVVSYNILICGLC 510
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
KA F F +EM+ G P + +L GLC RK+D L G + +
Sbjct: 511 KAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVM 570
Query: 286 MAQKLVKCYCELGRVDE 302
M L+ C +G++D+
Sbjct: 571 MHNILIHGLCSVGKLDD 587
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G KPD ++ L+C + AL L+ + S + + ++ I G S+G
Sbjct: 525 MLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVG 583
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D A + N+ TY +L+ G K D + + M +G+ P I
Sbjct: 584 KLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYN 643
Query: 254 KVLEGLCARRKLDRVKSFL 272
+++GLC R + F
Sbjct: 644 TIMKGLCMCRGVSYAMEFF 662
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 5/227 (2%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I + G ++N + A ++ M A+G D + I +G V AL + + + SS
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + Y + I ++ + G +N +LI G ++
Sbjct: 424 GGH-LDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGE 482
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
F EM G P++ ++ GLC K +F+K +L GWK + L+
Sbjct: 483 ASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLC 542
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRL 337
C ++D E + +V++H G+ + L D +
Sbjct: 543 GLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAM 589
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL +F+ M +P ++Y+ ++ F + +A AG + N+QTY LI
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
S K ++F+ F + M G P + V+ L KLD
Sbjct: 157 KMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLD 201
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y+ L+ + + + A+ ++ G++ D + N LI G + A+++
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMA 593
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M N TY+ + GF +G+ + + G ++ +Y +++ G
Sbjct: 594 NM-EHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMC 652
Query: 228 RDFDSVDRFYEEMMSLGIIPSI 249
R F+++ + GI P++
Sbjct: 653 RGVSYAMEFFDDARNHGIFPTV 674
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/106 (15%), Positives = 57/106 (53%)
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++Y +L++ ++A+ + V+ + + G+ P++ +++ C +++ ++ + FL
Sbjct: 114 IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLD 173
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ G+K + ++ + G++D+ E + +++ +P+V
Sbjct: 174 WMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDV 219
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + A+ + M G++P+ FN+LI + + A +F M
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEM- 334
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY+ I+G+S G+ + ++Y + G ++ TY +LI G K
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT 394
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+F +E+ ++P+ ++ G C R+ DR K ++ G NE L
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454
Query: 291 VKCYCELGRVDELEEQLETLTK 312
V +C D + L + +
Sbjct: 455 VSAFCRNEDFDGASQVLREMVR 476
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+ + + ME G + +N+LI G + +AL L +M S +P
Sbjct: 251 SGKLDK---GIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSG-LQP 306
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T++ I GF + +K + A + N TY +LI+G + D + RFY
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
E+M+ GI I ++ GLC + K + F+K L
Sbjct: 367 EDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKEL 404
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A + M GI+ D +N+LI LC + F +
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFG-LCKQAKTRKAAQFVKEL 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I G N D + Y + I +G N QT+ L+ + DF
Sbjct: 405 DKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDF 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
D + EM+ I + +V GL + K VK L+ + G
Sbjct: 465 DGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEG 511
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 3/201 (1%)
Query: 148 SLICACLCSGDVVTALSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
S++ L +G V +F+ ++ S E + +D+ F+ L +
Sbjct: 136 SILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMK 195
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF V++ + + L D RFY EM I P+ L V+ G C KLD
Sbjct: 196 DYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLD 255
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
+ L+ + G++ + L+ +CE G + + + K P V+ F+
Sbjct: 256 KGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVT--FNT 313
Query: 327 IIRLYALSDRLDDVEYSVGRM 347
+I + + +L + G M
Sbjct: 314 LIHGFCRAMKLQEASKVFGEM 334
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ +N+ A VF+++ +G+KP++ ++ LI C + D AL + M SS + N
Sbjct: 490 RQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSN-IEVNG 548
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I+G +G + A I V+ +Y S+I G K + DS YE
Sbjct: 549 VVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE 608
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM GI P++ ++ GLC ++D+ + G K++ L+ +C+
Sbjct: 609 EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 3/212 (1%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A++V L+K LK N Y+ LI + + A+ V M + I+ + V+ +
Sbjct: 497 ARIVFSNILEKGLKPNNYT---YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQT 553
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I G A L M+ + + +Y++ I GF G +D+ Y
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN 613
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G S NV TY SL++G K D +EM + G+ IP +++G C R ++
Sbjct: 614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESA 673
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ LL G ++ + L+ + LG +
Sbjct: 674 SALFSELLEEGLNPSQPIYNSLISGFRNLGNM 705
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+ +G+K D + +LI ++ +A +LF ++ E P+ Y++ I
Sbjct: 638 ALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLE-EGLNPSQPIYNSLI 696
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF +LGN+ A Y + G ++ TY +LI G LK + Y EM ++G++
Sbjct: 697 SGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLV 756
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I ++ GL + + +V + + N + ++ + G +DE
Sbjct: 757 PDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDE 812
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
LE R + KG + + Y LI K N+ A +F+ + +G+ P ++NSLI
Sbjct: 639 LEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISG 698
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++V AL L++ M+ + + + TY I G GN+ ++ Y A G
Sbjct: 699 FRNLGNMVAALDLYKKML-KDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVP 757
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ Y +++G K F V + +EEM + P++ I V+ G LD
Sbjct: 758 DEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLD 811
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
N SQ +++LI+ ++ A L L KMLK C L Y LI K N+
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDL---YKKMLKDGLRCDLGTYTTLIDGLLKDGNL 740
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A ++T M+A G+ PD ++ ++ G V + +FE M PN Y+A
Sbjct: 741 ILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM-KKNNVTPNVLIYNA 799
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
I+G GN+D + + + G + T++ L+ G +
Sbjct: 800 VIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQV 840
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 6/231 (2%)
Query: 75 DALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCL---DEYACLIALSGKVQNVPFAMHV 130
D+L+ SL + K L + L + +K + C+ + Y +I S K N+ A+ +
Sbjct: 267 DSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRL 326
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M + GI + SLI + D+V+AL LF+ M E PNS T+ I F
Sbjct: 327 KDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKM-EKEGPSPNSVTFSVLIEWFR 385
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G ++ ++Y G + +V ++I G LK + + + ++E G + ++
Sbjct: 386 KNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETG-LANVF 444
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ +L LC + K D L + G N ++ +C +D
Sbjct: 445 VCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMD 495
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V + +G +PDS +++ + AC + D+ A SL M + P+ +TY + I
Sbjct: 252 ALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVI 311
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-------FDSVDR---- 235
GN+D + ++ G S+NV SLI G K D FD +++
Sbjct: 312 LASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371
Query: 236 ------------------------FYEEMMSLGIIPSIPILEKVLEG-LCARRKLDRVKS 270
FY++M LG+ PS+ + +++G L ++ + +K
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
F + G N + ++ C+ G+ DE E L + P V+
Sbjct: 432 FDESFETG--LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVV 479
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF VN + + L++ K R D +M+ L +IP P + + L L R L
Sbjct: 158 GFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEA 217
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLH 322
K ++ G + Q L++ R ++ E LE L++ P+ LL+
Sbjct: 218 KELYSRMVAIGVDGDNVTTQLLMRASL---REEKPAEALEVLSRAIERGAEPDSLLY 271
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
Query: 142 DSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
++ + N +C + S G A L M S PN +Y+ + G N+D
Sbjct: 437 ETGLANVFVCNTILSWLCKQGKTDEATELLSKM-ESRGIGPNVVSYNNVMLGHCRQKNMD 495
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++ + G N TY LI G + D + M S I + + + ++
Sbjct: 496 LARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTII 555
Query: 257 EGLCARRKLDRVKSFLKFLL 276
GLC + + + L ++
Sbjct: 556 NGLCKVGQTSKARELLANMI 575
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M++ G + Y LI G+ + AM+VF M+ G +PD + +LI
Sbjct: 382 LDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAK 441
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+ +++ M + P++ TY I+ G++ A ++ + + G + N+
Sbjct: 442 AGFLDIAMDMYQRMQEAG-LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLV 500
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +I KAR++++ + Y +M + G P V+E L L+ + +
Sbjct: 501 TFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM 560
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G VD+ + + + + P V S +R++ +
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620
Query: 334 SD 335
S+
Sbjct: 621 SE 622
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
F++ +I L K L RL + + +G L + +IAL K +N A+
Sbjct: 465 FTYSVIINCLG----KAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ M+ G +PD ++ ++ G + A +F M + + P+ Y + +
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM-QRKNWVPDEPVYGLLVDLW 579
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
GNVD +WY A + AG NV T SL+ L+ + M++LG+ PS+
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 3/210 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIM 169
Y LI + K + AM ++ M+ G+ PD+ + S+I CL +G + A LF M
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTY-SVIINCLGKAGHLPAAHRLFCEM 490
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + PN T++ I+ + N + K Y AGF + TY ++
Sbjct: 491 VG-QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGF 549
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + + EM +P P+ +++ +D+ + + +L G + N
Sbjct: 550 LEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNS 609
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + + R+ E L+++ P +
Sbjct: 610 LLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA LI G+ + A+ VF M G++P +N L+ A SG V A ++F+ M
Sbjct: 317 YALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMR 376
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ +Y +S + + +++ K++ GF N+ TY +LI G KA D
Sbjct: 377 RDRIF-PDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDV 435
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLE--GLC 260
+ + YE+M GI + IL +++ G C
Sbjct: 436 EKMMEVYEKMRLSGIKANQTILTTIMDASGRC 467
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 9/226 (3%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L KM G+ + Y L+ G+ A +F M++ G +P SA+ +I
Sbjct: 165 LSKM--GSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEP-SAITYQIILKTFVE 221
Query: 157 GDVVT-ALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
GD A +FE ++ ++ KP+ K Y I + GN + K +++ + G +
Sbjct: 222 GDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQS 281
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY SL+ + V + Y++M I P + +++ R+ + S +
Sbjct: 282 TVTYNSLMSFET---SYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 338
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+L G + L+ + G V++ + +++ + P++
Sbjct: 339 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDL 384
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 103/266 (38%), Gaps = 28/266 (10%)
Query: 75 DALITSLQSSSPKKAQLVLEWRLDKMLKGN---------ESCLDE-----------YACL 114
+A+ +QSS P+ + + + L ++G+ E+ LDE Y +
Sbjct: 194 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 253
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
I + K N A VF+SM +G+ + +NSL+ +V +++ M S+
Sbjct: 254 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSD- 309
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+P+ +Y I + + + + AG + Y L+ + +
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 369
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++ M I P + +L ++ + F K + G++ N L+K Y
Sbjct: 370 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGY 429
Query: 295 CELGRVDELEEQLETL----TKCNQS 316
+ V+++ E E + K NQ+
Sbjct: 430 AKANDVEKMMEVYEKMRLSGIKANQT 455
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +P + + M+ G+KP+ +++L+ A C ++ F + +
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA-FCKEGMMQQAIKFYVDM 393
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + I +GN+ + + G NV TY +LI G A
Sbjct: 394 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 453
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +M + G+IP++ ++ G + +DR L L G G K + +
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C L +++ + + + +C L++
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A+ + M G+ P+ + SLI A G++ A L E++ E+ N TY A
Sbjct: 386 AIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTAL 443
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G + + + AG N+ +Y +LIHG +KA++ D E+ GI
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + + + GLC+ K++ K + + G K N + L+ Y + G E
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTE 560
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 7/258 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K +V A +F M+ +G+ PD+ +NS+I G + + FE M
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM- 323
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P+ TY+A I+ F G + ++Y G NV +Y +L+ K
Sbjct: 324 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 383
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+FY +M +G++P+ +++ C L +L G + N L
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ R+ E EE + P L ++ +I + + +D + + +
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPN--LASYNALIHGFVKAKNMDRALELLNELKGR 501
Query: 351 GLSFKSAEDVEMESWFIW 368
G+ D+ + FIW
Sbjct: 502 GIK----PDLLLYGTFIW 515
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 2/203 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y L+ K N +H+ M+ I+ F LI LC +V+ A+ F +
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG-LCKNKLVSKAVDYFNRI 603
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ + N+ + A I G V+A + + G + Y SL+ G+ K +
Sbjct: 604 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGN 663
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++M +G+ + ++ GL +L + +SFL+ ++G G +E +
Sbjct: 664 VLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCIS 723
Query: 290 LVKCYCELGRVDELEEQLETLTK 312
++K + ELG +DE E L K
Sbjct: 724 VLKKHYELGCIDEAVELQSYLMK 746
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 14/187 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F+ M+ + P + N L+ G F+ M+ + +P TY+ I
Sbjct: 211 AIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGA-RPTVFTYNIMI 269
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+V+A + G + TY S+I G K D F+EEM +
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE 329
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-------------ENMAQKLVKC 293
P + ++ C KL F + + G G K N E M Q+ +K
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 294 YCELGRV 300
Y ++ RV
Sbjct: 390 YVDMRRV 396
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 4/243 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL ++ K L +RL ++ML+ G E + Y LI + + A +F M+
Sbjct: 406 TSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT 465
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+ P+ A +N+LI + + ++ AL L + KP+ Y FI G SL ++
Sbjct: 466 AGVIPNLASYNALIHGFVKAKNMDRALELLNEL-KGRGIKPDLLLYGTFIWGLCSLEKIE 524
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A G N Y +L+ K+ + +EM L I ++ ++
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 584
Query: 257 EGLCARRKLDR-VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+GLC + + + V F + G + N + ++ C+ +V+ E + +
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644
Query: 316 SPE 318
P+
Sbjct: 645 VPD 647
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/146 (16%), Positives = 60/146 (41%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +DA S LG ++ + ++ ++ L+H K D V RF
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+++M+ G P++ +++ +C ++ + + + G + ++ + +
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
+GR+D+ E + P+V+ +
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITY 335
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + ME G +PD ++N++I G V A+ LF+ M + + ++ TY++ +
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAVTYNSLV 216
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G + + NV T+ ++I +K F + YEEM +
Sbjct: 217 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 276
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC ++D K L ++ G + L+ +C+ RVDE +
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ + + + ++ II+ Y + R D + RM
Sbjct: 337 FREMAQRGLVGDTIT--YNTIIQGYFQAGRPDAAQEIFSRM 375
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 111/287 (38%), Gaps = 68/287 (23%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------------- 157
Y +I S K+ V A+ +F ME G++ D+ +NSL+ CSG
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236
Query: 158 ------DVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVD 196
+V+T ++ ++ V ++ P+ TY++ I+G G VD
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G +V TY +LI+G K++ D + + EM G++ ++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 257 EGLCARRKLD---------------RVKSFLKFLLGGGWKIN------ENMAQK------ 289
+G + D R S L + L W++ ENM +
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDI 416
Query: 290 -----LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
++ C++G V++ + +L+ P+V+ + SG R
Sbjct: 417 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+ M++ +P+ ++ L+ + V AL LFE M SE + + TY+ I
Sbjct: 368 AQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE-IELDITTYNIVI 423
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GNV+ + + G +V +Y ++I G + R +D D Y +M G++
Sbjct: 424 HGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483
Query: 247 P 247
P
Sbjct: 484 P 484
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 14/200 (7%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F++++LI L +A+ +L+ + K CL + Y LI K + V
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMVTK------GCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M +G+ D+ +N++I +G A +F M S +PN +TY +
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS----RPNIRTYSILLY 389
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V+ + + +++ TY +IHG K + + + + G+ P
Sbjct: 390 GLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKP 449
Query: 248 SIPILEKVLEGLCARRKLDR 267
+ ++ G C +R+ D+
Sbjct: 450 DVVSYTTMISGFCRKRQWDK 469
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 46/257 (17%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNES----CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ 137
++ S K++ + LE +D K +S + +++ +++ K +N + +F ME
Sbjct: 39 RTFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVC 98
Query: 138 GIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
GI D +N +I C C CS F+ S +G +
Sbjct: 99 GIGHDLYSYNIVINCLCRCS---------------------------RFVIALSVVGKM- 130
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ G+ +V T SLI+G + R FD++D +M +G P + I +
Sbjct: 131 ---------MKFGYEPDVVTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTI 180
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G C ++ + G + + LV C GR + + + +
Sbjct: 181 IDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240
Query: 316 SPEVLLHFFSGIIRLYA 332
P V+ F+ +I ++
Sbjct: 241 VPNVIT--FTAVIDVFV 255
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++NV A + M ++G P +AVFN ++ AC +GD+ A + ++M S KP+
Sbjct: 384 RMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLM-ESRGLKPDV 442
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ISG++ G +D + A ++ TY +LI G K ++D + E
Sbjct: 443 YTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNE 502
Query: 240 MMSLGIIPSIPILEKVLEGLCAR 262
M G+ P+ K+++ C +
Sbjct: 503 MDRFGVQPNADEYNKLIQSFCLK 525
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 44/270 (16%)
Query: 95 WRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
W L K + ESC L+ LIAL GK+ A VF+ E G P++ + L
Sbjct: 214 WDLVKEIGEKESCGVLNLEILNELIALFGKLGKSKAAFDVFSKTEEFGFTPNAKTY-YLT 272
Query: 151 CACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
LC + A S+ E M+ S +S +GN+ W+ A
Sbjct: 273 LEALCKRSFMDWACSVCEKMLKS-----------GVLSEGEQMGNIIT---WFCKEGKAE 318
Query: 210 FSVNVQTYESLIHGSLKAR----------DFDSVDRFYEEMMS--------LGIIPSIPI 251
+ +V SL R D F +EM+ GI P
Sbjct: 319 EAYSVYELAKTKEKSLPPRFVATLITALCKNDGTITFAQEMLGDLSGEARRRGIKP---- 374
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
V+ LC R + K+ L ++ G + +V + G +DE +E L+ +
Sbjct: 375 FSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLME 434
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
P+V + ++ II YA +D+ +
Sbjct: 435 SRGLKPDV--YTYTVIISGYAKGGMMDEAQ 462
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 6/172 (3%)
Query: 146 FNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
F + + LC D + E++ +S E + K + I + NV
Sbjct: 338 FVATLITALCKNDGTITFAQ-EMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLL 396
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
I+ G + + ++H K D D + M S G+ P + ++ G
Sbjct: 397 DMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGG 456
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+D + L K++ L++ YC +++E +E L+ L + ++
Sbjct: 457 MMDEAQEILAEAKKKHKKLSPVTYHALIRGYC---KIEEYDEALKLLNEMDR 505
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 138/327 (42%), Gaps = 40/327 (12%)
Query: 48 LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC 107
L+ VS+ +D + + F + ++ ++ L S L L ++++ + ++
Sbjct: 187 LKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE--RNIKAS 244
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---------- 157
+ +Y+ +I K + A+ +F ME +GIK D ++SLI G
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 158 ---------DVVTALSLFEIMV-------SSEEYK--------PNSKTYDAFISGFSSLG 193
DVVT +L ++ V + E Y P++ TY++ I GF
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ N+ + ++ G ++ TY LI+ KA+ D R + E+ S G+IP+
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G C KL+ K + ++ G + L+ C+ G EL + LE K
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG---ELNKALEIFEKM 481
Query: 314 NQSPEVL-LHFFSGIIRLYALSDRLDD 339
+S L + ++ II + ++DD
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKVDD 508
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 3/211 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI PD+ +NSLI + A +F++MVS + +P+ TY I
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS-KGCEPDIVTYSILI 392
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + VD + + + G N TY +L+ G ++ ++ ++EM+S G+
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ +L+GLC +L++ + + + + ++ C +VD+
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+L+ P+V+ + G+ + +LS+
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 543
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M ++G +PD ++ LI + + V + LF +SS+ PN+ TY+ +
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR-EISSKGLIPNTITYNTLV 427
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++A + + ++ G +V TY L+ G + + +E+M +
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I I ++ G+C K+D S L G K + ++ C+ G + E +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 307 LETLTKCNQSPE 318
+ + +P+
Sbjct: 548 FRKMKEDGCTPD 559
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 3/267 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K+ LVL + L G E + +I + + + FA V G +PD+ F
Sbjct: 84 KQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITF 143
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
++L+ G V A++L + MV ++ +P+ T I+G G V +
Sbjct: 144 STLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSEALVLIDRMV 202
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF + TY +++ K+ + + +M I S+ V++ LC D
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
S + G K + L+ C G+ D+ + L + N P+V+ FS
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT--FSA 320
Query: 327 IIRLYALSDRLDDVEYSVGRMGKQGLS 353
+I ++ +L + + M +G++
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIA 347
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M+ + ++N +I + V A SLF +S + KP+ TY+ I
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF-CSLSDKGVKPDVVTYNVMI 532
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ + + G + + TY LI L S EEM G
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++ V++ L RR LD KSFL L
Sbjct: 593 ADSSTIKMVIDMLSDRR-LD--KSFLDML 618
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
K + P+ + ++ +I + + VE + +M + GL
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGL 612
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 5/230 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A V + M+ IKP+ N+++ +C + +F + +
Sbjct: 409 YNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGG-MCRHHGLNMAVVFFMDM 467
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RD 229
E K N TY I S+ NV+ WY + AG S + + Y +LI G + RD
Sbjct: 468 EKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRD 527
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D++ R E++ G + ++ C + ++V L + G K +
Sbjct: 528 HDAI-RVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNT 586
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L+ + + + +E +E + + P V + +I Y LD+
Sbjct: 587 LISFFGKHKDFESVERMMEQMREDGLDPTVTT--YGAVIDAYCSVGELDE 634
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ GK ++ + M G+ P + ++I A G++ AL LF+ M
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG 643
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ Y+ I+ FS LGN NV+TY +L +
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG 703
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++ + +EM+ P+ +E ++E L +L +++ F++
Sbjct: 704 ETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQ 746
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINEN--MAQKLVKCYCELG 298
K+N N + L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDA 184
A+ VF M G+ P+ FN +I +GD+ AL L M +S PN+ TY++
Sbjct: 237 ALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNS 296
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+GF G +D + + +G N +TY +L+ +A D R +EM S G
Sbjct: 297 VINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKG 356
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ + I ++ L ++ S L+ + +I+ +V+ C G V E
Sbjct: 357 LVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAV 416
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
E +++ +++ H + ++ + +L + +G M QGLS +
Sbjct: 417 EFQRQISEKKLVEDIVCH--NTLMHHFVRDKKLACADQILGSMLVQGLSLDA 466
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 33/294 (11%)
Query: 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
S S +NPLISR+L+ S K L+ ++W L+S++ K++ E
Sbjct: 52 SSSLTNPLISRVLREFRSSPKLALEF----------YNW-----VLRSNTVAKSENRFEA 96
Query: 96 R--LDKMLKGN---ESCLDEYACLIALSG-KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+ +L G+ + L A L+++ G K+ + + S +A G PD VF+SL
Sbjct: 97 SCVMIHLLVGSRRFDDALSIMANLMSVEGEKLSPLHVLSGLIRSYQACGSSPD--VFDSL 154
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ AC +GD A + E +E + + + F+ ++ +D K Y + G
Sbjct: 155 VRACTQNGDAQGAYEVIE-QTRAEGFCVSVHALNNFMGCLLNVNEIDRFWKVYKEMDSLG 213
Query: 210 FSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ NV T+ +I+ K ++ F+++ FY M+ G+ P++ +++G C +
Sbjct: 214 YVENVNTFNLVIYSFCKESKLFEALSVFY-RMLKCGVWPNVVSFNMMIDGACKTGDMRFA 272
Query: 269 KSFL-KFLLGGGWKINENMA--QKLVKCYCELGRVDELE----EQLETLTKCNQ 315
L K + G ++ N ++ +C+ GR+D E + +++ CN+
Sbjct: 273 LQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNE 326
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + SM QG+ D+ F +LI L G + AL +++ M+ + N Y++ +
Sbjct: 450 ADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNK-TSNLVIYNSIV 508
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G A A + A ++ TY +L++ SLK + + D +M
Sbjct: 509 NGLSKRGMAGAAE----AVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGE 564
Query: 247 PSIPIL--EKVLEGLCARRKLDRVKSFLKFLLGGG 279
S+ ++ ++ LC ++ K LKF++ G
Sbjct: 565 KSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERG 599
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 77/183 (42%), Gaps = 3/183 (1%)
Query: 87 KKAQLVLEWRL-DKMLKGNESCLDE-YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L L R+ M+K C + Y L+ G+ + A+ + M ++G+ ++
Sbjct: 303 KAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTV 362
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
++NS++ GD+ A+S+ M +S+ + + T + G G V ++
Sbjct: 363 IYNSIVYWLFMEGDIEGAMSVLRDM-NSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ 421
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++ + +L+H ++ + D+ M+ G+ +++G K
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGK 481
Query: 265 LDR 267
L+R
Sbjct: 482 LER 484
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 17/258 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +A +F +M ++G P+ +++LI +G V A +FE M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 615
Query: 171 SSEEY---------------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S++ +PN TY A + GF V+ K A G N
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 675
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y++LI G K D EM G ++ +++ ++ D L +
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
L N + +++ C++G+ DE + ++ + + P V+ ++ +I + +
Sbjct: 736 LENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT--YTAMIDGFGMIG 793
Query: 336 RLDDVEYSVGRMGKQGLS 353
+++ + RMG +G++
Sbjct: 794 KIETCLELLERMGSKGVA 811
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 19/242 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M QG PD++ ++ ++ + + A LFE M + TY +
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMV 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ KW+ G + NV TY +LIH LKA+ + +E M+S G +
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----------------L 290
P+I +++G C ++++ + + G + +M K L
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ RV+E + L+ ++ P ++ + +I +LD+ + M +
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEMSEH 703
Query: 351 GL 352
G
Sbjct: 704 GF 705
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
++VP F + +P+ + +L+ S V A L + M S E +PN
Sbjct: 618 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIV 676
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
YDA I G +G +D + GF + TY SLI K + D + +M+
Sbjct: 677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKML 736
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ I ++++GLC K D ++ + G + N ++ + +G+++
Sbjct: 737 ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIE 796
Query: 302 ELEEQLETLTKCNQSP 317
E LE + +P
Sbjct: 797 TCLELLERMGSKGVAP 812
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 13/210 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G P +FNSL+ A SGD A L + MV + P Y+ I
Sbjct: 359 VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG-HMPGYVVYNILIG-- 415
Query: 190 SSLGNVDAMN--------KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
S G+ D++N K Y+ +AAG +N S A ++ EM+
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G IP KVL LC K++ + + GG + +V +C+ G ++
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ + + + +P V+ ++ +I Y
Sbjct: 536 QARKWFNEMREVGCTPNVVT--YTALIHAY 563
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 5/209 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + + LD++ + +Q +DALI L + +AQ E + + G + L
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ---EVKTEMSEHGFPATLYT 711
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV+ A V + M P+ ++ +I G A L ++M
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM- 770
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY A I GF +G ++ + + G + N TY LI K
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EEM KV+EG
Sbjct: 831 DVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M A P+ +++L+C CL + + +M+ Y P+ K +++ +
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY-PSPKIFNSLV 379
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI------HGSLKARDFDSVDRFYEEM 240
+ + G+ K + G Y LI SL D ++ Y EM
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ G++ + + LC+ K ++ S ++ ++G G+ + + K++ C ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 301 D 301
+
Sbjct: 500 E 500
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 10/186 (5%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P + +N LI A L D + + SL +S + + T F +G
Sbjct: 232 RPSRSTYNCLIQAFL-KADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG------ 284
Query: 200 KWYAANI---AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
KW A F + Y LI G +A F+ F M + +P++ +L
Sbjct: 285 KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G +++L R K L ++ G + + LV YC G + L+ + KC
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 317 PEVLLH 322
P +++
Sbjct: 405 PGYVVY 410
>sp|Q3ECH5|PP107_ARATH Pentatricopeptide repeat-containing protein At1g66345,
mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=1
SV=1
Length = 544
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y + + + +V A + + ME G+ P FN LI G L E+MV
Sbjct: 342 YTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMV 401
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ ++ + S + NV+ N+ +I GF + TY LI G ++ D
Sbjct: 402 T-RGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDI 460
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + EM + P + ++ GLC K++ + +LK + + N ++ L
Sbjct: 461 DQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDAL 520
Query: 291 VKCYCELG 298
+K + ++G
Sbjct: 521 IKAFQKIG 528
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++NV A + T +G PD ++ LI + D+ AL LF M EY+ S
Sbjct: 421 KIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEM----EYRKMS 476
Query: 180 KTYDAF---ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
++ F I G + G V+A K+ N Y++LI K D + DR
Sbjct: 477 PGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIGDKTNADRV 536
Query: 237 YEEMMSL 243
Y EM+S+
Sbjct: 537 YNEMISV 543
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 129/322 (40%), Gaps = 48/322 (14%)
Query: 24 DRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIF------AFNSSQFSWDAL 77
D L ++ ++ +SSS PL+ LL ++I+ D+F F S + + L
Sbjct: 146 DSDLVDSLLDTYEISSSTPLVFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTL 205
Query: 78 ITSLQSSSPKKAQLVLEWRL-----DKMLKGNESCLDEYACLIALSGKVQNVPFAMH--- 129
I SS K LV WR+ DK + NE + ++ G+++ V +
Sbjct: 206 IH--YSSKSKIDDLV--WRIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLLDRIC 261
Query: 130 --------------VFTSMEAQGIKP---------------DSAVFNSLICACLCSGDVV 160
VF +E I+ D+ ++ ++ A GD+V
Sbjct: 262 GKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLV 321
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
+A +F+ M+ + NS Y F+ G+V + + +G S +T+ L
Sbjct: 322 SARKVFDEMLQ-RGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCL 380
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I G + + + E M++ G++PS ++++ + ++R L + G+
Sbjct: 381 IGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGF 440
Query: 281 KINENMAQKLVKCYCELGRVDE 302
+E+ L++ + E +D+
Sbjct: 441 VPDEHTYSHLIRGFIEGNDIDQ 462
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 31/285 (10%)
Query: 1 MALACRVLSVAKSSRYLL-MPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTL 59
MA A R L + RYL+ R +L+ + S S +NP ++ Q+ + I +L
Sbjct: 1 MASALRRLVEQQQWRYLVSQSTRSPKLIHGFFSFS---SKTNPNPNKQQQILIDYISKSL 57
Query: 60 DSVDIFAFNSSQFSW----DALITS--LQSSSPKKAQLVLEW-RLDKMLKGNESCLDEYA 112
S D + S++FS D+LI + L+ +P+ A+ L + + + YA
Sbjct: 58 QSNDTWETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRNLRHGIKSYA 117
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I + K + + A + S PDS + +SL L +EI S+
Sbjct: 118 LTIHILVKARLLIDARALIESSLLNS-PPDSDLVDSL-------------LDTYEISSST 163
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+D + ++ + ++ + GF+++V T +LIH S K++ D
Sbjct: 164 ------PLVFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDL 217
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
V R YE + I P+ + +++ LC +L V L + G
Sbjct: 218 VWRIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLLDRICG 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,966,776
Number of Sequences: 539616
Number of extensions: 4991718
Number of successful extensions: 16540
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 13375
Number of HSP's gapped (non-prelim): 1838
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)