Query 017234
Match_columns 375
No_of_seqs 408 out of 2772
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.4E-54 5.3E-59 423.2 40.8 327 35-367 435-765 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-53 2.4E-58 418.6 41.2 327 30-363 465-796 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.2E-48 1.1E-52 374.8 32.3 316 32-365 118-435 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.8E-47 6.1E-52 369.7 33.8 298 31-347 152-488 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.1E-46 6.7E-51 370.5 34.2 316 34-365 250-598 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-45 2.3E-50 366.7 32.7 315 34-367 149-500 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.7E-20 8E-25 168.9 33.9 290 52-356 51-353 (389)
8 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 163.5 33.4 268 78-358 43-317 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-18 2.9E-23 175.2 36.7 318 36-371 566-885 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-17 2.2E-22 168.8 39.1 231 110-350 569-799 (899)
11 PRK15174 Vi polysaccharide exp 99.8 5.8E-16 1.3E-20 148.9 38.2 297 41-350 46-347 (656)
12 PRK15174 Vi polysaccharide exp 99.8 9.6E-15 2.1E-19 140.5 38.1 296 40-350 79-381 (656)
13 KOG4422 Uncharacterized conser 99.7 4.6E-14 9.9E-19 121.0 29.0 307 36-352 115-464 (625)
14 TIGR00990 3a0801s09 mitochondr 99.7 5.2E-13 1.1E-17 128.7 36.1 294 45-350 135-496 (615)
15 KOG4422 Uncharacterized conser 99.7 4E-13 8.7E-18 115.3 28.6 237 34-279 204-463 (625)
16 KOG4626 O-linked N-acetylgluco 99.7 1.1E-13 2.3E-18 124.0 25.9 275 67-360 213-493 (966)
17 TIGR00990 3a0801s09 mitochondr 99.6 7.6E-13 1.7E-17 127.5 32.4 255 84-350 308-571 (615)
18 PRK11447 cellulose synthase su 99.6 4.3E-12 9.2E-17 130.4 37.2 305 47-361 361-752 (1157)
19 PF13429 TPR_15: Tetratricopep 99.6 3.4E-15 7.5E-20 129.6 11.9 258 78-349 15-276 (280)
20 KOG4626 O-linked N-acetylgluco 99.6 4.6E-13 9.9E-18 120.0 25.0 298 34-349 113-450 (966)
21 PRK11447 cellulose synthase su 99.6 7.5E-12 1.6E-16 128.6 36.2 257 81-350 362-700 (1157)
22 PRK10747 putative protoheme IX 99.6 1.6E-11 3.6E-16 111.6 32.8 293 40-349 85-389 (398)
23 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.3E-19 126.6 11.6 258 44-311 15-275 (280)
24 PRK10049 pgaA outer membrane p 99.6 9.9E-11 2.1E-15 115.3 38.1 306 39-358 51-428 (765)
25 PRK10049 pgaA outer membrane p 99.6 4.1E-11 9E-16 117.9 35.5 308 39-360 85-464 (765)
26 PRK09782 bacteriophage N4 rece 99.6 4.9E-11 1.1E-15 118.3 35.7 237 107-358 476-712 (987)
27 TIGR00540 hemY_coli hemY prote 99.6 2.8E-11 6E-16 110.7 31.1 296 39-349 84-398 (409)
28 PRK09782 bacteriophage N4 rece 99.5 4.9E-11 1.1E-15 118.3 32.6 265 70-350 476-740 (987)
29 PRK14574 hmsH outer membrane p 99.5 6.8E-10 1.5E-14 108.1 38.2 147 54-209 52-199 (822)
30 COG2956 Predicted N-acetylgluc 99.5 2.9E-10 6.4E-15 94.7 28.7 238 72-320 37-285 (389)
31 PRK10747 putative protoheme IX 99.5 1.7E-10 3.7E-15 105.0 29.0 250 48-312 129-389 (398)
32 KOG1126 DNA-binding cell divis 99.5 5.7E-11 1.2E-15 107.7 24.6 259 77-350 359-620 (638)
33 PF13041 PPR_2: PPR repeat fam 99.5 2E-13 4.3E-18 84.6 6.4 50 212-261 1-50 (50)
34 TIGR02521 type_IV_pilW type IV 99.5 1.8E-10 3.9E-15 96.8 26.4 201 142-349 30-231 (234)
35 TIGR00540 hemY_coli hemY prote 99.4 6.1E-10 1.3E-14 101.9 30.6 271 74-358 85-372 (409)
36 PRK14574 hmsH outer membrane p 99.4 4.4E-09 9.6E-14 102.6 37.5 120 42-171 73-197 (822)
37 PRK12370 invasion protein regu 99.4 2.3E-10 4.9E-15 108.6 28.2 265 70-352 255-537 (553)
38 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 96.8 24.8 201 107-312 30-231 (234)
39 COG2956 Predicted N-acetylgluc 99.4 2.1E-10 4.5E-15 95.6 23.8 225 120-353 47-281 (389)
40 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4E-14 92.5 30.0 300 40-358 85-398 (400)
41 PF13041 PPR_2: PPR repeat fam 99.4 8E-13 1.7E-17 81.9 6.4 49 177-225 1-49 (50)
42 PRK12370 invasion protein regu 99.4 1.6E-09 3.4E-14 102.9 29.7 235 105-350 253-502 (553)
43 KOG1155 Anaphase-promoting com 99.4 3E-09 6.5E-14 92.8 27.5 255 81-349 273-535 (559)
44 KOG1155 Anaphase-promoting com 99.4 1E-09 2.2E-14 95.7 24.2 165 179-349 330-494 (559)
45 KOG1126 DNA-binding cell divis 99.3 3.9E-10 8.5E-15 102.4 22.1 247 85-350 334-586 (638)
46 KOG4318 Bicoid mRNA stability 99.3 1.1E-10 2.5E-15 108.8 18.3 254 56-336 10-286 (1088)
47 KOG1129 TPR repeat-containing 99.3 3.5E-10 7.5E-15 94.4 18.0 231 111-350 226-458 (478)
48 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 99.4 23.5 241 108-348 199-477 (508)
49 KOG4318 Bicoid mRNA stability 99.3 3.3E-10 7.1E-15 105.8 19.5 247 30-299 18-286 (1088)
50 COG3071 HemY Uncharacterized e 99.3 2E-08 4.4E-13 86.2 28.7 268 37-317 116-394 (400)
51 KOG2076 RNA polymerase III tra 99.2 4.3E-08 9.2E-13 92.3 29.0 285 54-349 157-477 (895)
52 KOG1129 TPR repeat-containing 99.2 2.8E-09 6E-14 89.1 18.7 226 77-313 229-458 (478)
53 KOG2003 TPR repeat-containing 99.2 3.2E-08 7E-13 86.3 24.8 204 154-371 501-705 (840)
54 KOG2002 TPR-containing nuclear 99.2 7.3E-08 1.6E-12 91.4 28.1 274 70-352 413-711 (1018)
55 KOG2076 RNA polymerase III tra 99.2 2.2E-07 4.8E-12 87.6 30.1 271 70-348 206-510 (895)
56 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-07 3.4E-12 82.1 25.9 218 82-314 38-266 (296)
57 PF12569 NARP1: NMDA receptor- 99.1 4.6E-07 9.9E-12 84.0 29.9 255 81-352 15-293 (517)
58 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.7E-12 82.7 24.4 220 121-351 39-266 (296)
59 KOG1840 Kinesin light chain [C 99.1 9.2E-08 2E-12 87.6 24.3 251 61-311 187-477 (508)
60 COG3063 PilF Tfp pilus assembl 99.1 2.2E-07 4.7E-12 74.4 23.0 188 81-275 46-233 (250)
61 PF12569 NARP1: NMDA receptor- 99.1 6.4E-07 1.4E-11 83.0 28.7 290 46-350 13-334 (517)
62 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.7E-11 78.9 30.1 263 81-351 54-337 (355)
63 COG3063 PilF Tfp pilus assembl 99.0 1E-06 2.2E-11 70.6 24.5 199 110-313 37-236 (250)
64 KOG2002 TPR-containing nuclear 99.0 2.1E-06 4.5E-11 81.9 30.5 255 105-368 267-575 (1018)
65 KOG0495 HAT repeat protein [RN 99.0 1.1E-05 2.5E-10 73.9 32.6 283 54-346 424-710 (913)
66 KOG0495 HAT repeat protein [RN 99.0 5.5E-06 1.2E-10 76.0 30.1 257 81-350 595-880 (913)
67 KOG0547 Translocase of outer m 99.0 6.3E-07 1.4E-11 79.2 23.4 223 118-349 336-565 (606)
68 KOG1173 Anaphase-promoting com 98.9 1.6E-06 3.4E-11 78.1 25.3 260 54-329 262-530 (611)
69 KOG1174 Anaphase-promoting com 98.9 7.8E-06 1.7E-10 71.0 28.4 305 31-350 188-500 (564)
70 KOG2003 TPR repeat-containing 98.9 4E-07 8.6E-12 79.7 21.0 238 85-336 471-709 (840)
71 cd05804 StaR_like StaR_like; a 98.9 1.5E-05 3.4E-10 71.7 31.2 263 81-351 17-294 (355)
72 KOG0547 Translocase of outer m 98.9 5.8E-07 1.3E-11 79.4 20.6 221 81-312 337-565 (606)
73 PF04733 Coatomer_E: Coatomer 98.9 2.7E-07 5.8E-12 79.7 18.0 247 81-350 12-265 (290)
74 KOG1173 Anaphase-promoting com 98.9 9.5E-06 2.1E-10 73.2 27.9 268 82-364 256-530 (611)
75 PF12854 PPR_1: PPR repeat 98.9 3E-09 6.5E-14 59.2 3.7 32 209-240 2-33 (34)
76 KOG1070 rRNA processing protei 98.9 3.8E-06 8.2E-11 83.0 26.8 237 98-341 1448-1691(1710)
77 KOG1915 Cell cycle control pro 98.9 2.6E-05 5.7E-10 69.0 29.3 88 261-350 449-536 (677)
78 PF12854 PPR_1: PPR repeat 98.8 5.1E-09 1.1E-13 58.3 3.9 32 138-169 2-33 (34)
79 KOG1128 Uncharacterized conser 98.8 5.2E-06 1.1E-10 77.0 22.9 218 112-353 402-619 (777)
80 TIGR03302 OM_YfiO outer membra 98.7 7.1E-06 1.5E-10 69.3 21.7 61 289-350 171-232 (235)
81 PF04733 Coatomer_E: Coatomer 98.7 8.4E-07 1.8E-11 76.6 15.7 223 116-358 9-236 (290)
82 KOG1070 rRNA processing protei 98.7 1.8E-05 3.9E-10 78.4 25.2 235 71-310 1458-1697(1710)
83 PLN02789 farnesyltranstransfer 98.7 9.5E-05 2E-09 64.9 27.7 223 116-347 45-299 (320)
84 PRK15179 Vi polysaccharide bio 98.7 4E-05 8.7E-10 74.0 26.7 131 142-277 85-216 (694)
85 PLN02789 farnesyltranstransfer 98.7 9.1E-05 2E-09 65.0 26.7 228 82-321 49-308 (320)
86 KOG1174 Anaphase-promoting com 98.6 0.0001 2.2E-09 64.4 25.9 258 81-350 207-467 (564)
87 TIGR03302 OM_YfiO outer membra 98.6 1.5E-05 3.2E-10 67.3 20.7 185 106-313 31-232 (235)
88 KOG4340 Uncharacterized conser 98.6 2.5E-05 5.5E-10 65.1 20.6 200 31-245 4-209 (459)
89 KOG3081 Vesicle coat complex C 98.6 0.00011 2.3E-09 60.5 23.4 153 186-350 115-271 (299)
90 COG5010 TadD Flp pilus assembl 98.6 3.3E-05 7.2E-10 63.3 20.0 158 112-274 70-227 (257)
91 KOG2047 mRNA splicing factor [ 98.6 0.00062 1.3E-08 62.9 29.4 170 181-353 389-581 (835)
92 PRK10370 formate-dependent nit 98.5 3.6E-05 7.8E-10 62.8 19.8 119 156-278 52-173 (198)
93 KOG1125 TPR repeat-containing 98.5 2.6E-05 5.6E-10 70.7 19.8 224 116-349 293-526 (579)
94 PRK10370 formate-dependent nit 98.5 0.00012 2.5E-09 59.8 21.8 150 150-315 23-175 (198)
95 KOG1915 Cell cycle control pro 98.5 0.00078 1.7E-08 60.0 28.6 267 70-354 72-354 (677)
96 COG5010 TadD Flp pilus assembl 98.5 7.8E-05 1.7E-09 61.2 19.8 159 147-310 70-228 (257)
97 PRK15179 Vi polysaccharide bio 98.4 0.00012 2.5E-09 70.8 23.8 232 107-364 27-259 (694)
98 PRK04841 transcriptional regul 98.4 0.00023 5E-09 72.6 27.5 270 81-351 463-761 (903)
99 COG4783 Putative Zn-dependent 98.4 0.0011 2.3E-08 59.4 27.5 139 153-313 316-454 (484)
100 KOG0624 dsRNA-activated protei 98.4 0.00079 1.7E-08 57.6 26.8 256 81-349 49-335 (504)
101 PRK15359 type III secretion sy 98.4 3.2E-05 6.9E-10 59.7 15.8 87 188-276 33-119 (144)
102 COG4783 Putative Zn-dependent 98.4 0.00051 1.1E-08 61.4 24.9 183 140-350 271-454 (484)
103 KOG1156 N-terminal acetyltrans 98.4 0.00052 1.1E-08 63.3 25.3 294 54-362 25-329 (700)
104 KOG0985 Vesicle coat protein c 98.4 0.00056 1.2E-08 66.3 25.6 252 41-346 988-1245(1666)
105 PRK15359 type III secretion sy 98.4 2.8E-05 6E-10 60.0 14.4 94 217-312 27-120 (144)
106 KOG4340 Uncharacterized conser 98.4 9.6E-05 2.1E-09 61.8 18.0 260 36-310 43-336 (459)
107 TIGR00756 PPR pentatricopeptid 98.4 7.1E-07 1.5E-11 50.2 4.1 33 216-248 2-34 (35)
108 KOG4162 Predicted calmodulin-b 98.3 0.00082 1.8E-08 63.3 25.6 255 87-350 461-783 (799)
109 PRK14720 transcript cleavage f 98.3 0.00027 5.8E-09 69.4 23.4 236 66-332 25-268 (906)
110 KOG2047 mRNA splicing factor [ 98.3 0.002 4.4E-08 59.6 26.9 247 81-330 358-631 (835)
111 KOG2376 Signal recognition par 98.3 0.0025 5.4E-08 58.4 27.2 194 40-244 12-254 (652)
112 TIGR02552 LcrH_SycD type III s 98.3 5.8E-05 1.3E-09 57.6 15.0 91 220-312 23-113 (135)
113 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.4E-11 49.1 4.0 32 216-247 3-34 (34)
114 PRK04841 transcriptional regul 98.3 0.0018 3.9E-08 66.1 30.0 270 81-350 420-720 (903)
115 KOG2376 Signal recognition par 98.3 0.0005 1.1E-08 62.8 22.5 119 81-210 23-141 (652)
116 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 48.9 4.4 32 324-355 3-34 (35)
117 KOG4162 Predicted calmodulin-b 98.3 0.001 2.2E-08 62.6 24.9 253 54-314 462-784 (799)
118 KOG3785 Uncharacterized conser 98.3 0.00089 1.9E-08 57.5 22.4 92 255-350 399-490 (557)
119 KOG1125 TPR repeat-containing 98.3 0.00043 9.3E-09 63.1 21.7 251 81-343 296-564 (579)
120 KOG1128 Uncharacterized conser 98.3 9.1E-05 2E-09 69.0 17.4 206 81-312 409-615 (777)
121 KOG3081 Vesicle coat complex C 98.3 0.0012 2.6E-08 54.5 21.9 198 105-314 69-272 (299)
122 KOG3060 Uncharacterized conser 98.3 0.0016 3.5E-08 53.4 22.2 194 81-279 23-221 (289)
123 KOG3060 Uncharacterized conser 98.2 0.0017 3.7E-08 53.3 22.7 190 120-314 24-221 (289)
124 PF10037 MRP-S27: Mitochondria 98.2 2.6E-05 5.5E-10 70.2 13.3 122 105-227 63-186 (429)
125 PF13812 PPR_3: Pentatricopept 98.2 1.9E-06 4.2E-11 48.1 4.0 32 110-141 3-34 (34)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00011 2.4E-09 65.8 17.0 124 217-348 172-295 (395)
127 KOG3616 Selective LIM binding 98.2 0.00014 3.1E-09 67.9 17.8 193 115-344 739-931 (1636)
128 PF09976 TPR_21: Tetratricopep 98.2 0.0001 2.2E-09 57.0 14.8 127 215-347 13-144 (145)
129 PRK14720 transcript cleavage f 98.2 0.00044 9.6E-09 67.9 21.7 229 37-295 31-268 (906)
130 KOG1156 N-terminal acetyltrans 98.2 0.0033 7.1E-08 58.3 25.6 265 73-349 10-282 (700)
131 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.5E-09 55.9 13.7 99 107-208 16-114 (135)
132 PF10037 MRP-S27: Mitochondria 98.2 7.5E-05 1.6E-09 67.2 14.2 133 58-192 50-186 (429)
133 KOG1914 mRNA cleavage and poly 98.1 0.00092 2E-08 60.5 20.4 189 159-350 309-501 (656)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 65.4 15.1 124 111-241 172-295 (395)
135 PF08579 RPM2: Mitochondrial r 98.1 9.8E-05 2.1E-09 52.5 11.1 77 220-296 31-116 (120)
136 KOG3617 WD40 and TPR repeat-co 98.1 0.00043 9.3E-09 65.6 18.4 239 70-348 725-994 (1416)
137 KOG0985 Vesicle coat protein c 98.1 0.0026 5.6E-08 61.9 23.7 278 36-345 1020-1336(1666)
138 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.6E-09 54.7 14.2 124 111-239 15-143 (145)
139 PF01535 PPR: PPR repeat; Int 98.1 5.1E-06 1.1E-10 45.2 3.4 29 216-244 2-30 (31)
140 KOG1914 mRNA cleavage and poly 98.1 0.0085 1.9E-07 54.6 25.7 152 158-312 346-500 (656)
141 PF08579 RPM2: Mitochondrial r 98.0 6.7E-05 1.5E-09 53.3 9.2 77 113-190 30-115 (120)
142 KOG2053 Mitochondrial inherita 98.0 0.01 2.2E-07 57.2 26.1 75 119-197 54-128 (932)
143 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0036 7.9E-08 54.9 21.5 110 215-346 178-287 (319)
144 KOG3785 Uncharacterized conser 98.0 0.0018 3.9E-08 55.7 18.4 201 110-320 287-497 (557)
145 PF01535 PPR: PPR repeat; Int 98.0 1.1E-05 2.4E-10 43.8 3.6 29 324-352 3-31 (31)
146 KOG0548 Molecular co-chaperone 98.0 0.014 3.1E-07 53.0 28.5 125 223-351 307-456 (539)
147 PF06239 ECSIT: Evolutionarily 97.9 0.00021 4.5E-09 57.4 10.8 116 105-240 44-165 (228)
148 cd00189 TPR Tetratricopeptide 97.9 0.00035 7.7E-09 48.7 11.4 23 325-347 72-94 (100)
149 PF06239 ECSIT: Evolutionarily 97.9 0.00047 1E-08 55.4 12.6 105 140-264 44-153 (228)
150 PF05843 Suf: Suppressor of fo 97.9 0.00039 8.6E-09 60.1 13.3 129 181-312 3-135 (280)
151 KOG1127 TPR repeat-containing 97.9 0.0018 3.9E-08 62.8 18.4 220 81-309 469-696 (1238)
152 KOG3617 WD40 and TPR repeat-co 97.9 0.00063 1.4E-08 64.6 14.6 213 106-348 724-965 (1416)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0008 1.7E-08 49.7 13.0 99 252-350 5-105 (119)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00088 1.9E-08 49.5 13.0 98 111-208 5-105 (119)
155 cd00189 TPR Tetratricopeptide 97.8 0.0005 1.1E-08 48.0 10.9 15 293-307 77-91 (100)
156 KOG3616 Selective LIM binding 97.8 0.0028 6E-08 59.7 17.6 109 221-344 739-847 (1636)
157 KOG0548 Molecular co-chaperone 97.7 0.035 7.7E-07 50.6 22.6 222 74-314 227-456 (539)
158 KOG0624 dsRNA-activated protei 97.7 0.027 5.9E-07 48.5 25.4 85 154-242 166-251 (504)
159 PRK15363 pathogenicity island 97.7 0.0044 9.5E-08 47.6 14.6 85 224-310 45-129 (157)
160 CHL00033 ycf3 photosystem I as 97.7 0.0015 3.3E-08 51.9 12.6 61 182-242 38-100 (168)
161 PF14938 SNAP: Soluble NSF att 97.6 0.019 4.1E-07 49.8 20.1 126 221-347 121-263 (282)
162 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.4E-08 56.4 13.1 145 144-294 2-150 (280)
163 PLN03088 SGT1, suppressor of 97.6 0.0023 5E-08 57.4 14.6 87 189-277 12-98 (356)
164 PRK10866 outer membrane biogen 97.6 0.031 6.6E-07 47.2 20.7 186 142-349 31-240 (243)
165 PRK02603 photosystem I assembl 97.6 0.0084 1.8E-07 47.8 16.3 91 107-199 34-126 (172)
166 PF12895 Apc3: Anaphase-promot 97.6 9E-05 2E-09 51.2 4.3 17 186-202 32-48 (84)
167 PRK02603 photosystem I assembl 97.6 0.0061 1.3E-07 48.6 15.2 61 182-242 38-100 (172)
168 PRK15363 pathogenicity island 97.6 0.0046 1E-07 47.5 13.5 94 253-350 39-132 (157)
169 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.4E-09 50.0 5.2 47 263-309 3-50 (84)
170 KOG2280 Vacuolar assembly/sort 97.6 0.028 6.1E-07 53.3 20.8 269 54-346 491-795 (829)
171 PLN03088 SGT1, suppressor of 97.6 0.0037 7.9E-08 56.2 14.9 92 150-244 9-100 (356)
172 PRK10153 DNA-binding transcrip 97.5 0.013 2.8E-07 55.1 18.2 142 209-358 332-488 (517)
173 CHL00033 ycf3 photosystem I as 97.5 0.005 1.1E-07 48.9 13.5 95 250-347 36-139 (168)
174 KOG2053 Mitochondrial inherita 97.5 0.13 2.8E-06 50.0 30.0 215 54-279 27-256 (932)
175 PF14938 SNAP: Soluble NSF att 97.4 0.019 4.1E-07 49.9 17.4 131 218-364 98-239 (282)
176 PRK10866 outer membrane biogen 97.4 0.053 1.1E-06 45.8 18.9 52 222-273 183-236 (243)
177 KOG0553 TPR repeat-containing 97.3 0.0043 9.3E-08 52.3 11.5 95 223-321 90-184 (304)
178 PF12688 TPR_5: Tetratrico pep 97.3 0.013 2.8E-07 43.2 12.5 56 222-277 9-66 (120)
179 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.4E-08 43.5 6.0 48 193-241 5-52 (68)
180 PF12921 ATP13: Mitochondrial 97.3 0.0044 9.6E-08 46.2 9.8 97 107-224 1-98 (126)
181 PRK10153 DNA-binding transcrip 97.2 0.04 8.6E-07 52.0 18.0 136 104-243 333-482 (517)
182 PF12688 TPR_5: Tetratrico pep 97.2 0.03 6.6E-07 41.3 13.5 56 116-171 9-66 (120)
183 PF13432 TPR_16: Tetratricopep 97.2 0.003 6.5E-08 41.0 7.4 56 291-349 4-59 (65)
184 KOG2796 Uncharacterized conser 97.2 0.076 1.7E-06 44.2 16.6 136 181-317 179-319 (366)
185 KOG1127 TPR repeat-containing 97.1 0.065 1.4E-06 52.6 18.2 184 158-350 473-659 (1238)
186 PF13432 TPR_16: Tetratricopep 97.1 0.0027 5.9E-08 41.2 6.3 21 185-205 37-57 (65)
187 KOG2796 Uncharacterized conser 97.1 0.056 1.2E-06 45.0 14.8 133 144-278 178-315 (366)
188 PF03704 BTAD: Bacterial trans 97.0 0.02 4.2E-07 44.2 11.4 55 220-275 68-122 (146)
189 KOG1538 Uncharacterized conser 97.0 0.18 3.8E-06 47.4 18.6 93 251-354 749-850 (1081)
190 KOG0553 TPR repeat-containing 96.9 0.015 3.3E-07 49.1 11.0 153 186-349 88-244 (304)
191 PRK10803 tol-pal system protei 96.9 0.023 5E-07 48.4 12.4 86 225-312 154-245 (263)
192 PF14559 TPR_19: Tetratricopep 96.9 0.0026 5.6E-08 41.7 5.4 62 120-185 3-64 (68)
193 PF13525 YfiO: Outer membrane 96.9 0.17 3.7E-06 41.5 17.0 62 74-136 9-70 (203)
194 COG4700 Uncharacterized protei 96.9 0.15 3.2E-06 40.3 18.1 128 176-307 86-216 (251)
195 PF13414 TPR_11: TPR repeat; P 96.9 0.008 1.7E-07 39.5 7.5 64 283-349 2-66 (69)
196 PF04840 Vps16_C: Vps16, C-ter 96.9 0.28 6.1E-06 43.2 21.8 85 250-346 178-262 (319)
197 PF13281 DUF4071: Domain of un 96.8 0.33 7.3E-06 43.3 22.2 27 324-350 308-334 (374)
198 PRK10803 tol-pal system protei 96.8 0.031 6.7E-07 47.7 12.2 88 260-349 154-245 (263)
199 PF13414 TPR_11: TPR repeat; P 96.8 0.0065 1.4E-07 39.9 6.6 62 250-312 4-66 (69)
200 PF12921 ATP13: Mitochondrial 96.8 0.025 5.4E-07 42.2 10.2 51 210-260 48-99 (126)
201 PF03704 BTAD: Bacterial trans 96.8 0.008 1.7E-07 46.4 8.0 70 181-251 64-138 (146)
202 COG4235 Cytochrome c biogenesi 96.8 0.16 3.5E-06 43.2 15.9 100 213-314 155-257 (287)
203 PF13525 YfiO: Outer membrane 96.7 0.25 5.4E-06 40.5 19.8 182 150-340 12-197 (203)
204 PF13281 DUF4071: Domain of un 96.6 0.48 1E-05 42.4 20.5 82 107-189 140-227 (374)
205 PF13424 TPR_12: Tetratricopep 96.6 0.016 3.4E-07 39.1 7.4 64 285-348 6-73 (78)
206 PF13371 TPR_9: Tetratricopept 96.6 0.019 4.2E-07 38.1 7.7 53 189-242 5-57 (73)
207 COG4700 Uncharacterized protei 96.6 0.28 6E-06 38.8 18.4 128 140-270 86-214 (251)
208 KOG1130 Predicted G-alpha GTPa 96.5 0.11 2.4E-06 46.0 13.4 300 68-373 12-371 (639)
209 COG4235 Cytochrome c biogenesi 96.5 0.2 4.3E-06 42.7 14.5 102 140-244 153-257 (287)
210 PF13371 TPR_9: Tetratricopept 96.5 0.026 5.7E-07 37.4 7.8 55 293-350 4-58 (73)
211 PRK15331 chaperone protein Sic 96.3 0.37 8.1E-06 37.4 14.0 87 224-312 47-133 (165)
212 KOG3941 Intermediate in Toll s 96.2 0.049 1.1E-06 45.8 9.4 89 140-229 64-173 (406)
213 PF04053 Coatomer_WDAD: Coatom 96.2 0.15 3.3E-06 47.0 13.5 129 182-345 298-426 (443)
214 KOG3941 Intermediate in Toll s 96.2 0.1 2.3E-06 43.9 10.9 84 122-206 86-186 (406)
215 KOG0550 Molecular chaperone (D 96.1 0.91 2E-05 40.6 16.9 156 187-350 177-350 (486)
216 PF13424 TPR_12: Tetratricopep 96.0 0.037 8.1E-07 37.3 6.7 62 250-311 6-73 (78)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.45 9.7E-06 43.0 14.5 127 182-312 400-530 (660)
218 PF04053 Coatomer_WDAD: Coatom 96.0 0.46 9.9E-06 43.9 15.4 154 82-273 273-426 (443)
219 PRK15331 chaperone protein Sic 96.0 0.3 6.4E-06 38.0 11.8 90 186-277 44-133 (165)
220 PF07035 Mic1: Colon cancer-as 96.0 0.59 1.3E-05 36.6 15.0 135 129-278 15-149 (167)
221 KOG0543 FKBP-type peptidyl-pro 96.0 0.2 4.4E-06 44.4 12.3 97 250-350 258-355 (397)
222 PF09205 DUF1955: Domain of un 95.9 0.47 1E-05 35.2 12.2 62 253-315 90-151 (161)
223 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.3 2.7E-05 40.2 20.9 135 213-350 396-531 (660)
224 smart00299 CLH Clathrin heavy 95.9 0.41 8.9E-06 36.5 12.8 86 182-275 10-95 (140)
225 PF13170 DUF4003: Protein of u 95.9 1.1 2.4E-05 39.0 20.3 130 125-256 79-224 (297)
226 KOG2280 Vacuolar assembly/sort 95.8 1.9 4.1E-05 41.6 21.7 292 39-347 439-770 (829)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.3 6.5E-06 44.4 13.2 65 105-171 72-140 (453)
228 smart00299 CLH Clathrin heavy 95.8 0.62 1.3E-05 35.5 15.5 43 113-156 12-54 (140)
229 PF10300 DUF3808: Protein of u 95.7 1.6 3.4E-05 41.0 17.9 164 182-349 191-375 (468)
230 PF10300 DUF3808: Protein of u 95.6 0.85 1.8E-05 42.7 16.0 164 146-312 191-375 (468)
231 COG3898 Uncharacterized membra 95.6 1.6 3.4E-05 38.9 30.1 295 38-350 83-392 (531)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.11 2.5E-06 47.0 9.6 101 246-354 72-178 (453)
233 KOG2041 WD40 repeat protein [G 95.4 0.91 2E-05 43.3 15.0 94 248-350 851-952 (1189)
234 KOG2610 Uncharacterized conser 95.4 0.59 1.3E-05 40.6 12.7 152 120-275 115-273 (491)
235 COG1729 Uncharacterized protei 95.4 0.35 7.5E-06 40.7 11.1 90 261-350 153-244 (262)
236 COG3118 Thioredoxin domain-con 95.3 1.7 3.6E-05 37.2 15.7 194 68-272 98-295 (304)
237 PF13512 TPR_18: Tetratricopep 95.2 0.97 2.1E-05 34.3 12.3 56 259-314 20-77 (142)
238 COG1729 Uncharacterized protei 95.1 0.59 1.3E-05 39.4 11.5 96 145-243 144-244 (262)
239 PF13170 DUF4003: Protein of u 95.0 2.3 4.9E-05 37.1 21.9 20 267-286 200-219 (297)
240 COG3898 Uncharacterized membra 95.0 2.5 5.5E-05 37.6 24.5 247 53-317 137-396 (531)
241 PF04184 ST7: ST7 protein; In 94.9 3.2 6.9E-05 38.3 17.4 167 74-260 172-342 (539)
242 COG3118 Thioredoxin domain-con 94.9 2.2 4.9E-05 36.5 15.3 145 188-336 143-287 (304)
243 COG4105 ComL DNA uptake lipopr 94.7 2.2 4.7E-05 35.8 22.5 190 144-350 36-233 (254)
244 PF04184 ST7: ST7 protein; In 94.7 3.5 7.5E-05 38.1 17.6 82 249-331 259-341 (539)
245 COG3629 DnrI DNA-binding trans 94.5 0.51 1.1E-05 40.3 10.0 78 180-258 154-236 (280)
246 PF13512 TPR_18: Tetratricopep 94.4 1.5 3.2E-05 33.3 11.3 74 153-226 20-94 (142)
247 KOG0543 FKBP-type peptidyl-pro 94.3 1.3 2.8E-05 39.6 12.4 97 214-312 257-354 (397)
248 KOG1538 Uncharacterized conser 94.3 4 8.7E-05 38.9 15.9 218 39-278 600-846 (1081)
249 COG4785 NlpI Lipoprotein NlpI, 94.3 2.5 5.4E-05 34.5 12.7 29 143-171 99-127 (297)
250 KOG2610 Uncharacterized conser 94.2 3.2 6.9E-05 36.3 13.9 157 153-312 113-275 (491)
251 COG4649 Uncharacterized protei 94.2 2.2 4.8E-05 33.5 16.3 153 177-330 57-213 (221)
252 COG0457 NrfG FOG: TPR repeat [ 94.1 2.6 5.6E-05 34.3 25.7 64 108-171 59-123 (291)
253 KOG1464 COP9 signalosome, subu 94.1 3.2 6.9E-05 35.1 17.6 48 123-170 42-92 (440)
254 KOG2041 WD40 repeat protein [G 94.0 6.2 0.00014 38.1 17.9 203 105-347 689-904 (1189)
255 PF09205 DUF1955: Domain of un 93.9 2 4.3E-05 32.0 13.9 139 191-353 14-152 (161)
256 KOG1550 Extracellular protein 93.9 4.6 0.0001 38.9 16.4 184 159-353 228-429 (552)
257 PF08631 SPO22: Meiosis protei 93.8 4 8.7E-05 35.3 24.1 123 119-243 4-150 (278)
258 PF08631 SPO22: Meiosis protei 93.8 4 8.8E-05 35.3 25.5 164 81-249 4-192 (278)
259 PF13428 TPR_14: Tetratricopep 93.8 0.27 5.7E-06 28.8 5.2 22 186-207 8-29 (44)
260 PF13929 mRNA_stabil: mRNA sta 93.7 2.9 6.3E-05 35.8 12.9 148 146-296 134-290 (292)
261 KOG4555 TPR repeat-containing 93.6 2.2 4.7E-05 31.8 10.4 92 223-315 52-146 (175)
262 KOG1130 Predicted G-alpha GTPa 93.6 0.49 1.1E-05 42.2 8.4 231 116-348 25-302 (639)
263 COG4105 ComL DNA uptake lipopr 93.6 3.9 8.5E-05 34.3 18.9 56 221-276 174-231 (254)
264 KOG4555 TPR repeat-containing 93.3 2.6 5.6E-05 31.4 11.6 90 188-279 52-145 (175)
265 PRK11906 transcriptional regul 93.3 6.7 0.00014 36.1 16.1 158 144-307 252-430 (458)
266 COG3629 DnrI DNA-binding trans 93.3 1.4 3.1E-05 37.7 10.5 79 214-293 153-236 (280)
267 PF11207 DUF2989: Protein of u 93.2 0.64 1.4E-05 37.4 7.9 78 81-163 117-198 (203)
268 PF10602 RPN7: 26S proteasome 93.2 2.1 4.6E-05 34.1 11.0 98 250-347 37-139 (177)
269 PF10602 RPN7: 26S proteasome 93.1 1.9 4.1E-05 34.4 10.6 97 215-311 37-140 (177)
270 KOG4570 Uncharacterized conser 93.1 1.8 4E-05 37.3 10.7 104 138-243 59-164 (418)
271 PF09613 HrpB1_HrpK: Bacterial 93.0 3.5 7.5E-05 32.0 13.0 18 260-277 55-72 (160)
272 PF07035 Mic1: Colon cancer-as 92.9 3.7 8.1E-05 32.2 14.1 135 56-208 14-149 (167)
273 PF09613 HrpB1_HrpK: Bacterial 92.8 3.7 8.1E-05 31.8 12.7 51 191-243 22-73 (160)
274 PF13176 TPR_7: Tetratricopept 92.7 0.3 6.6E-06 27.1 4.0 25 324-348 2-26 (36)
275 PF02259 FAT: FAT domain; Int 92.5 7.4 0.00016 34.8 20.4 65 213-277 145-212 (352)
276 COG4649 Uncharacterized protei 92.5 4.3 9.3E-05 31.9 14.2 130 73-207 61-195 (221)
277 PF13428 TPR_14: Tetratricopep 92.2 0.6 1.3E-05 27.3 5.1 27 217-243 4-30 (44)
278 KOG1941 Acetylcholine receptor 91.8 8.9 0.00019 34.0 15.0 228 81-309 17-271 (518)
279 COG0457 NrfG FOG: TPR repeat [ 91.7 6.2 0.00013 31.9 26.0 225 121-350 36-265 (291)
280 PF13176 TPR_7: Tetratricopept 91.5 0.45 9.7E-06 26.4 3.8 23 146-168 2-24 (36)
281 KOG2114 Vacuolar assembly/sort 91.5 6.3 0.00014 38.8 13.3 177 109-310 335-516 (933)
282 KOG1585 Protein required for f 91.3 7.7 0.00017 32.4 12.2 55 252-307 193-250 (308)
283 KOG2114 Vacuolar assembly/sort 91.3 3.2 6.9E-05 40.7 11.2 138 81-240 379-516 (933)
284 KOG1920 IkappaB kinase complex 91.2 20 0.00044 36.9 20.4 110 217-348 942-1053(1265)
285 KOG1464 COP9 signalosome, subu 91.0 8.9 0.00019 32.5 21.5 206 64-270 19-252 (440)
286 PF02284 COX5A: Cytochrome c o 90.5 2.7 5.9E-05 29.7 7.5 49 265-313 26-74 (108)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 3 6.5E-05 29.2 7.5 49 264-312 22-70 (103)
288 PF13929 mRNA_stabil: mRNA sta 90.2 11 0.00024 32.4 16.8 130 192-321 141-280 (292)
289 TIGR02561 HrpB1_HrpK type III 90.2 6.9 0.00015 30.0 10.6 19 225-243 55-73 (153)
290 KOG4570 Uncharacterized conser 89.7 2.8 6.1E-05 36.2 8.5 106 61-172 54-164 (418)
291 KOG1941 Acetylcholine receptor 89.5 13 0.00027 33.1 12.3 227 120-347 18-272 (518)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 2.8 6E-05 29.3 6.6 44 127-170 26-69 (103)
293 KOG1585 Protein required for f 89.2 12 0.00026 31.3 16.5 209 108-344 31-250 (308)
294 PF00637 Clathrin: Region in C 89.2 0.14 3.1E-06 39.2 0.6 53 221-273 14-66 (143)
295 PF13431 TPR_17: Tetratricopep 89.1 0.64 1.4E-05 25.4 3.0 21 213-233 12-32 (34)
296 PF10579 Rapsyn_N: Rapsyn N-te 88.4 2.2 4.7E-05 28.6 5.5 49 296-344 18-66 (80)
297 PF02284 COX5A: Cytochrome c o 88.3 2.8 6.2E-05 29.6 6.3 44 128-171 30-73 (108)
298 PF11207 DUF2989: Protein of u 88.0 7.1 0.00015 31.6 9.3 71 232-303 124-197 (203)
299 PF07079 DUF1347: Protein of u 87.9 22 0.00047 32.7 27.2 304 38-349 47-408 (549)
300 PRK11906 transcriptional regul 87.7 23 0.0005 32.7 19.4 161 180-346 252-432 (458)
301 KOG0550 Molecular chaperone (D 87.5 22 0.00047 32.3 18.0 153 117-279 178-351 (486)
302 COG4455 ImpE Protein of avirul 87.5 6.3 0.00014 32.3 8.7 77 216-293 3-81 (273)
303 PF04097 Nic96: Nup93/Nic96; 87.3 31 0.00067 33.8 16.9 83 81-171 269-355 (613)
304 PF00515 TPR_1: Tetratricopept 87.2 1.5 3.3E-05 23.6 3.8 25 146-170 4-28 (34)
305 PF12862 Apc5: Anaphase-promot 87.1 7.2 0.00016 27.3 8.1 60 76-135 4-68 (94)
306 COG2909 MalT ATP-dependent tra 87.0 35 0.00076 34.2 21.4 221 54-274 433-684 (894)
307 KOG2297 Predicted translation 87.0 19 0.00042 31.2 14.8 19 285-303 322-340 (412)
308 PF13431 TPR_17: Tetratricopep 86.8 0.9 2E-05 24.8 2.7 25 104-128 9-33 (34)
309 PF00637 Clathrin: Region in C 86.7 0.49 1.1E-05 36.2 2.2 84 113-204 12-95 (143)
310 PRK15180 Vi polysaccharide bio 86.6 27 0.00059 32.4 13.5 125 115-244 296-421 (831)
311 PF07079 DUF1347: Protein of u 86.2 28 0.0006 32.1 23.1 112 74-191 49-179 (549)
312 PF13374 TPR_10: Tetratricopep 86.2 1.9 4E-05 24.4 4.1 26 145-170 4-29 (42)
313 PF13762 MNE1: Mitochondrial s 85.6 14 0.00031 28.2 12.8 82 182-263 42-129 (145)
314 cd08819 CARD_MDA5_2 Caspase ac 85.6 7.4 0.00016 26.7 7.0 66 268-341 21-86 (88)
315 PF13374 TPR_10: Tetratricopep 85.4 2.5 5.5E-05 23.8 4.4 25 251-275 4-28 (42)
316 COG2976 Uncharacterized protei 85.3 18 0.00039 29.2 10.2 130 69-209 52-189 (207)
317 COG2976 Uncharacterized protei 85.0 19 0.00041 29.1 13.6 133 213-351 53-189 (207)
318 PRK15180 Vi polysaccharide bio 84.8 33 0.00072 31.8 13.0 123 80-210 299-422 (831)
319 KOG0687 26S proteasome regulat 84.6 27 0.00059 30.6 13.4 135 174-312 65-209 (393)
320 PF00515 TPR_1: Tetratricopept 84.0 3.5 7.6E-05 22.1 4.3 25 324-348 4-28 (34)
321 COG4455 ImpE Protein of avirul 83.8 8.7 0.00019 31.5 7.8 77 181-258 3-81 (273)
322 PF07163 Pex26: Pex26 protein; 83.6 24 0.00051 30.3 10.5 87 219-307 88-181 (309)
323 KOG0276 Vesicle coat complex C 83.5 18 0.00039 34.4 10.7 133 108-274 614-746 (794)
324 PF07719 TPR_2: Tetratricopept 83.5 2.9 6.2E-05 22.3 3.8 23 148-170 6-28 (34)
325 PF07163 Pex26: Pex26 protein; 83.4 14 0.0003 31.6 9.1 88 148-237 88-181 (309)
326 TIGR02561 HrpB1_HrpK type III 83.3 18 0.0004 27.7 12.4 53 155-209 22-74 (153)
327 KOG0276 Vesicle coat complex C 82.5 23 0.00049 33.8 11.0 97 191-308 649-745 (794)
328 PF13181 TPR_8: Tetratricopept 81.9 4.4 9.5E-05 21.6 4.2 26 324-349 4-29 (34)
329 KOG1920 IkappaB kinase complex 81.6 72 0.0016 33.3 21.7 92 246-349 932-1027(1265)
330 PHA02875 ankyrin repeat protei 81.6 33 0.00072 31.5 12.3 213 44-285 6-231 (413)
331 PF07719 TPR_2: Tetratricopept 81.5 5 0.00011 21.3 4.3 24 325-348 5-28 (34)
332 TIGR03504 FimV_Cterm FimV C-te 81.1 4.2 9.2E-05 23.8 3.9 23 290-312 5-27 (44)
333 KOG1586 Protein required for f 80.9 32 0.00068 28.8 16.0 25 293-317 163-187 (288)
334 COG1747 Uncharacterized N-term 80.9 50 0.0011 31.0 20.6 180 106-294 64-249 (711)
335 KOG2582 COP9 signalosome, subu 80.8 41 0.0009 30.0 12.1 98 74-171 105-211 (422)
336 TIGR03504 FimV_Cterm FimV C-te 80.5 3.5 7.7E-05 24.1 3.5 27 326-352 4-30 (44)
337 COG3947 Response regulator con 79.9 39 0.00085 29.2 16.5 70 251-321 281-355 (361)
338 KOG1550 Extracellular protein 79.6 61 0.0013 31.3 18.7 154 118-279 259-427 (552)
339 KOG2066 Vacuolar assembly/sort 79.2 65 0.0014 31.9 13.0 149 115-276 363-532 (846)
340 PF02259 FAT: FAT domain; Int 79.1 46 0.001 29.6 21.6 162 80-243 39-213 (352)
341 COG5159 RPN6 26S proteasome re 77.5 46 0.001 28.7 11.1 128 221-348 10-152 (421)
342 KOG4077 Cytochrome c oxidase, 77.4 23 0.00051 26.2 7.5 48 266-313 66-113 (149)
343 PF13181 TPR_8: Tetratricopept 76.7 7.3 0.00016 20.7 4.0 27 145-171 3-29 (34)
344 PF07721 TPR_4: Tetratricopept 76.4 4.1 8.9E-05 20.5 2.7 18 327-344 7-24 (26)
345 COG2137 OraA Uncharacterized p 76.4 37 0.00079 27.0 10.5 111 233-349 54-166 (174)
346 PF13174 TPR_6: Tetratricopept 76.1 5.8 0.00013 20.8 3.5 20 329-348 8-27 (33)
347 PRK10564 maltose regulon perip 75.9 6.1 0.00013 34.1 5.0 29 324-352 260-288 (303)
348 COG1747 Uncharacterized N-term 75.5 73 0.0016 30.0 23.6 168 140-315 63-236 (711)
349 KOG4234 TPR repeat-containing 75.3 43 0.00094 27.3 9.1 90 223-314 104-198 (271)
350 cd00280 TRFH Telomeric Repeat 75.3 40 0.00088 26.9 11.3 68 159-229 85-158 (200)
351 KOG4077 Cytochrome c oxidase, 75.2 19 0.00042 26.7 6.6 43 129-171 70-112 (149)
352 PF10366 Vps39_1: Vacuolar sor 75.0 29 0.00062 25.1 7.9 26 324-349 42-67 (108)
353 TIGR02508 type_III_yscG type I 74.6 28 0.0006 24.7 9.0 78 195-279 21-98 (115)
354 COG2909 MalT ATP-dependent tra 74.0 1E+02 0.0023 31.1 25.7 306 40-354 287-651 (894)
355 PF10579 Rapsyn_N: Rapsyn N-te 73.8 14 0.0003 24.8 5.2 19 251-269 45-63 (80)
356 KOG3807 Predicted membrane pro 73.1 57 0.0012 28.8 10.0 52 260-311 286-338 (556)
357 COG4785 NlpI Lipoprotein NlpI, 72.8 53 0.0012 27.2 13.6 165 104-278 95-266 (297)
358 PF13762 MNE1: Mitochondrial s 72.7 41 0.00088 25.8 10.7 81 147-227 43-128 (145)
359 COG0735 Fur Fe2+/Zn2+ uptake r 72.1 29 0.00063 26.6 7.5 60 203-263 10-69 (145)
360 KOG2063 Vacuolar assembly/sort 71.7 48 0.001 33.6 10.6 26 146-171 507-532 (877)
361 PF10366 Vps39_1: Vacuolar sor 71.6 35 0.00076 24.6 8.1 26 252-277 42-67 (108)
362 PF11846 DUF3366: Domain of un 71.6 19 0.0004 29.1 6.8 32 176-207 141-172 (193)
363 PF14689 SPOB_a: Sensor_kinase 70.7 13 0.00028 23.7 4.5 45 125-171 7-51 (62)
364 PF11846 DUF3366: Domain of un 70.3 25 0.00055 28.4 7.3 52 261-312 120-172 (193)
365 KOG2908 26S proteasome regulat 70.0 69 0.0015 28.4 9.8 55 223-277 84-143 (380)
366 KOG4234 TPR repeat-containing 69.7 60 0.0013 26.5 9.0 89 152-243 104-197 (271)
367 PF11848 DUF3368: Domain of un 69.6 21 0.00046 21.3 5.1 31 261-291 14-44 (48)
368 COG5159 RPN6 26S proteasome re 68.9 77 0.0017 27.4 14.5 161 114-274 9-190 (421)
369 PF11663 Toxin_YhaV: Toxin wit 68.7 6.1 0.00013 29.5 3.0 31 226-258 107-137 (140)
370 PF09670 Cas_Cas02710: CRISPR- 68.1 97 0.0021 28.3 11.2 55 188-243 140-198 (379)
371 PRK10564 maltose regulon perip 68.1 15 0.00033 31.8 5.6 38 282-319 254-292 (303)
372 KOG0687 26S proteasome regulat 67.4 89 0.0019 27.6 16.2 136 210-349 66-209 (393)
373 PRK12356 glutaminase; Reviewed 67.3 67 0.0014 28.3 9.4 14 209-222 93-106 (319)
374 KOG4648 Uncharacterized conser 66.9 38 0.00082 30.0 7.7 93 186-283 104-197 (536)
375 PF11848 DUF3368: Domain of un 66.7 25 0.00054 21.0 5.0 26 193-218 16-41 (48)
376 PF11838 ERAP1_C: ERAP1-like C 65.5 96 0.0021 27.3 19.2 118 150-274 136-262 (324)
377 PF11838 ERAP1_C: ERAP1-like C 65.4 96 0.0021 27.3 20.4 111 195-309 146-262 (324)
378 PF14689 SPOB_a: Sensor_kinase 65.1 18 0.0004 23.0 4.4 26 324-349 26-51 (62)
379 KOG4648 Uncharacterized conser 64.9 62 0.0013 28.8 8.6 81 150-241 104-185 (536)
380 KOG2066 Vacuolar assembly/sort 64.7 1.6E+02 0.0034 29.5 20.9 73 78-159 363-439 (846)
381 PF08311 Mad3_BUB1_I: Mad3/BUB 64.4 57 0.0012 24.3 9.7 82 84-168 40-124 (126)
382 PF12862 Apc5: Anaphase-promot 64.4 41 0.00088 23.4 6.5 24 327-350 47-70 (94)
383 COG3947 Response regulator con 64.2 98 0.0021 26.9 16.2 223 115-349 94-341 (361)
384 KOG2908 26S proteasome regulat 63.8 95 0.002 27.6 9.5 79 82-160 87-174 (380)
385 KOG2063 Vacuolar assembly/sort 63.7 1.1E+02 0.0025 31.1 11.3 169 181-349 506-712 (877)
386 PF06552 TOM20_plant: Plant sp 63.6 24 0.00053 28.0 5.6 99 103-210 20-138 (186)
387 KOG0890 Protein kinase of the 63.3 2.8E+02 0.006 31.8 20.8 64 284-352 1670-1733(2382)
388 smart00028 TPR Tetratricopepti 63.0 16 0.00035 18.0 3.5 26 324-349 4-29 (34)
389 COG0735 Fur Fe2+/Zn2+ uptake r 62.8 52 0.0011 25.2 7.3 59 99-157 11-69 (145)
390 PHA02875 ankyrin repeat protei 62.5 1.3E+02 0.0028 27.7 14.8 181 43-249 38-230 (413)
391 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 62 0.0013 24.1 9.3 45 301-346 80-124 (126)
392 KOG1258 mRNA processing protei 61.5 1.6E+02 0.0034 28.4 25.7 304 34-351 42-396 (577)
393 PF09477 Type_III_YscG: Bacter 61.5 59 0.0013 23.4 8.9 38 195-233 22-59 (116)
394 KOG4507 Uncharacterized conser 61.2 83 0.0018 30.2 9.3 126 97-225 596-721 (886)
395 smart00638 LPD_N Lipoprotein N 60.5 1.7E+02 0.0037 28.4 23.1 232 68-311 307-558 (574)
396 PF08424 NRDE-2: NRDE-2, neces 60.3 1.2E+02 0.0027 26.8 19.5 99 176-276 16-129 (321)
397 PRK11619 lytic murein transgly 58.6 2E+02 0.0042 28.6 25.8 226 112-349 103-374 (644)
398 KOG2062 26S proteasome regulat 58.0 1.5E+02 0.0033 29.4 10.6 185 158-351 38-240 (929)
399 PRK14956 DNA polymerase III su 58.0 1.7E+02 0.0037 27.7 12.6 46 160-207 183-228 (484)
400 PF10345 Cohesin_load: Cohesin 57.6 2E+02 0.0043 28.3 21.6 194 106-310 28-251 (608)
401 PF11663 Toxin_YhaV: Toxin wit 57.4 15 0.00032 27.6 3.2 30 297-330 108-137 (140)
402 TIGR02508 type_III_yscG type I 57.1 68 0.0015 22.8 8.0 10 156-165 52-61 (115)
403 PF07575 Nucleopor_Nup85: Nup8 57.0 31 0.00067 33.5 6.3 85 191-277 371-466 (566)
404 PRK11639 zinc uptake transcrip 56.8 73 0.0016 25.1 7.4 48 111-158 28-75 (169)
405 PRK09687 putative lyase; Provi 55.4 1.4E+02 0.003 25.9 27.4 219 106-350 35-263 (280)
406 smart00638 LPD_N Lipoprotein N 55.3 2.1E+02 0.0045 27.8 26.3 214 106-328 308-541 (574)
407 PF11768 DUF3312: Protein of u 53.9 2.1E+02 0.0045 27.4 11.0 61 146-208 411-473 (545)
408 KOG4567 GTPase-activating prot 53.8 97 0.0021 27.1 7.8 70 234-308 263-342 (370)
409 KOG0991 Replication factor C, 53.8 1.4E+02 0.0029 25.3 10.9 140 110-260 132-283 (333)
410 PF04097 Nic96: Nup93/Nic96; 53.7 2.3E+02 0.005 27.9 20.0 65 69-137 110-181 (613)
411 KOG1258 mRNA processing protei 53.1 2.2E+02 0.0047 27.4 20.5 183 142-335 296-489 (577)
412 COG5187 RPN7 26S proteasome re 53.0 1.6E+02 0.0034 25.7 12.9 134 140-277 78-220 (412)
413 PRK09857 putative transposase; 52.7 1.6E+02 0.0035 25.8 10.0 64 287-353 209-272 (292)
414 KOG4279 Serine/threonine prote 52.6 2.4E+02 0.0052 28.2 10.9 198 128-345 145-368 (1226)
415 PF11817 Foie-gras_1: Foie gra 52.4 55 0.0012 27.7 6.5 58 183-240 182-244 (247)
416 PRK11639 zinc uptake transcrip 52.3 94 0.002 24.5 7.4 58 206-264 18-75 (169)
417 PRK10941 hypothetical protein; 52.1 1.6E+02 0.0034 25.5 10.1 61 287-350 184-244 (269)
418 PF11817 Foie-gras_1: Foie gra 52.0 1E+02 0.0023 26.0 8.1 52 255-306 184-240 (247)
419 PHA03100 ankyrin repeat protei 50.9 2.2E+02 0.0047 26.8 13.1 26 43-71 38-63 (480)
420 PF02847 MA3: MA3 domain; Int 50.4 92 0.002 22.3 6.8 17 152-168 11-27 (113)
421 KOG0890 Protein kinase of the 50.1 4.6E+02 0.0099 30.3 16.7 150 113-273 1388-1542(2382)
422 PF09454 Vps23_core: Vps23 cor 50.0 43 0.00093 21.6 4.1 29 251-279 10-38 (65)
423 PRK08691 DNA polymerase III su 49.9 2.4E+02 0.0052 28.2 10.9 47 159-207 180-226 (709)
424 KOG2034 Vacuolar sorting prote 49.2 3.1E+02 0.0066 28.0 17.1 169 151-346 366-555 (911)
425 PRK09857 putative transposase; 49.1 1.8E+02 0.0039 25.4 9.2 61 219-280 211-271 (292)
426 PF07575 Nucleopor_Nup85: Nup8 49.0 2.6E+02 0.0057 27.2 13.0 175 55-242 282-466 (566)
427 COG5108 RPO41 Mitochondrial DN 48.7 1.2E+02 0.0027 29.6 8.4 46 113-158 33-80 (1117)
428 PF10475 DUF2450: Protein of u 47.6 1.5E+02 0.0032 25.9 8.6 23 247-269 195-217 (291)
429 KOG0686 COP9 signalosome, subu 47.3 2.3E+02 0.005 26.0 13.7 176 108-291 150-351 (466)
430 PF10475 DUF2450: Protein of u 47.3 1.9E+02 0.0042 25.2 9.5 24 281-304 194-217 (291)
431 PRK14963 DNA polymerase III su 46.8 2.7E+02 0.0058 26.7 10.7 87 159-248 177-275 (504)
432 COG5108 RPO41 Mitochondrial DN 46.3 1.7E+02 0.0037 28.7 8.9 118 148-275 33-159 (1117)
433 cd07153 Fur_like Ferric uptake 46.2 64 0.0014 23.3 5.3 46 114-159 6-51 (116)
434 smart00777 Mad3_BUB1_I Mad3/BU 46.0 1.2E+02 0.0027 22.5 9.5 44 301-345 80-123 (125)
435 PF13934 ELYS: Nuclear pore co 45.8 1.8E+02 0.0039 24.3 10.6 22 220-241 114-135 (226)
436 cd08819 CARD_MDA5_2 Caspase ac 45.7 99 0.0021 21.3 6.6 14 157-170 50-63 (88)
437 PF02847 MA3: MA3 domain; Int 45.6 88 0.0019 22.4 5.9 21 220-240 8-28 (113)
438 COG5187 RPN7 26S proteasome re 45.3 2.1E+02 0.0045 25.0 13.4 100 211-312 112-220 (412)
439 cd07153 Fur_like Ferric uptake 45.2 65 0.0014 23.3 5.2 32 267-298 18-49 (116)
440 PRK11905 bifunctional proline 45.2 2.7E+02 0.0058 30.1 11.1 149 159-318 49-203 (1208)
441 PF12926 MOZART2: Mitotic-spin 44.9 1E+02 0.0022 21.2 7.8 43 200-242 29-71 (88)
442 PF03745 DUF309: Domain of unk 44.8 81 0.0017 20.1 5.3 13 228-240 13-25 (62)
443 KOG4567 GTPase-activating prot 44.6 1.5E+02 0.0032 26.1 7.5 71 199-274 263-343 (370)
444 KOG3807 Predicted membrane pro 44.5 90 0.002 27.6 6.4 55 152-209 284-341 (556)
445 PRK14958 DNA polymerase III su 44.3 3E+02 0.0064 26.4 12.0 83 163-248 184-279 (509)
446 PF06957 COPI_C: Coatomer (COP 44.3 1.2E+02 0.0026 28.1 7.5 45 306-350 285-329 (422)
447 PRK09687 putative lyase; Provi 43.8 2.2E+02 0.0047 24.7 30.6 222 68-315 34-265 (280)
448 cd08789 CARD_IPS-1_RIG-I Caspa 43.1 1.1E+02 0.0023 21.0 6.1 50 285-341 33-82 (84)
449 PF10255 Paf67: RNA polymerase 42.6 1.9E+02 0.0042 26.6 8.6 57 254-310 127-190 (404)
450 PRK12356 glutaminase; Reviewed 42.6 2.4E+02 0.0053 25.0 10.1 17 64-80 91-107 (319)
451 PRK06645 DNA polymerase III su 42.6 3.1E+02 0.0068 26.2 10.8 85 161-248 191-291 (507)
452 cd08326 CARD_CASP9 Caspase act 42.6 1.1E+02 0.0024 20.9 6.0 63 268-340 18-80 (84)
453 PF01475 FUR: Ferric uptake re 42.4 59 0.0013 23.7 4.6 48 112-159 11-58 (120)
454 PF04190 DUF410: Protein of un 42.4 2.2E+02 0.0048 24.4 18.8 82 178-278 89-170 (260)
455 COG2178 Predicted RNA-binding 42.3 1.9E+02 0.004 23.5 10.2 56 188-243 38-98 (204)
456 PRK09462 fur ferric uptake reg 42.3 1.5E+02 0.0033 22.6 7.8 34 230-263 33-66 (148)
457 PF15297 CKAP2_C: Cytoskeleton 42.1 2.6E+02 0.0056 25.1 9.1 56 264-321 118-177 (353)
458 PF14853 Fis1_TPR_C: Fis1 C-te 42.0 81 0.0018 19.3 5.1 20 293-312 10-29 (53)
459 PF04090 RNA_pol_I_TF: RNA pol 41.8 1.9E+02 0.0042 23.6 12.6 134 214-363 41-181 (199)
460 PF02631 RecX: RecX family; I 41.3 1.4E+02 0.003 21.8 9.3 106 231-344 9-116 (121)
461 PF14669 Asp_Glu_race_2: Putat 41.1 2E+02 0.0043 23.5 13.9 22 324-345 184-205 (233)
462 PF09797 NatB_MDM20: N-acetylt 40.6 2.8E+02 0.006 25.1 22.8 42 233-275 202-243 (365)
463 PF01475 FUR: Ferric uptake re 40.2 60 0.0013 23.7 4.3 44 220-263 13-56 (120)
464 PF11123 DNA_Packaging_2: DNA 40.1 1.1E+02 0.0024 20.2 4.8 33 123-156 12-44 (82)
465 PRK09462 fur ferric uptake reg 40.0 1.7E+02 0.0037 22.4 7.5 63 238-301 6-69 (148)
466 PF09454 Vps23_core: Vps23 cor 38.6 85 0.0018 20.2 4.2 33 177-209 6-38 (65)
467 KOG0376 Serine-threonine phosp 38.5 98 0.0021 28.8 6.0 50 155-207 16-66 (476)
468 KOG1463 26S proteasome regulat 38.1 3E+02 0.0065 24.7 12.1 59 218-276 132-195 (411)
469 PHA03100 ankyrin repeat protei 37.5 3.5E+02 0.0076 25.3 12.1 115 118-248 80-203 (480)
470 PF09477 Type_III_YscG: Bacter 37.2 1.6E+02 0.0035 21.3 8.2 78 229-313 21-98 (116)
471 PF09868 DUF2095: Uncharacteri 37.0 1.3E+02 0.0027 22.0 5.1 37 113-150 66-102 (128)
472 cd08812 CARD_RIG-I_like Caspas 36.1 1.4E+02 0.0031 20.5 7.5 40 295-340 45-85 (88)
473 KOG2659 LisH motif-containing 35.5 2.5E+02 0.0053 23.5 7.3 101 245-348 22-130 (228)
474 PF08542 Rep_fac_C: Replicatio 35.5 1.4E+02 0.0031 20.2 5.5 43 75-121 9-51 (89)
475 cd00245 Glm_e Coenzyme B12-dep 35.4 44 0.00096 30.8 3.4 154 157-319 25-202 (428)
476 KOG4814 Uncharacterized conser 35.3 3.1E+02 0.0068 26.9 8.8 98 73-171 357-456 (872)
477 PF10345 Cohesin_load: Cohesin 35.2 4.5E+02 0.0097 25.9 28.0 197 36-241 29-252 (608)
478 PF12926 MOZART2: Mitotic-spin 34.6 1.5E+02 0.0033 20.3 8.7 43 129-171 29-71 (88)
479 PRK11904 bifunctional proline 33.9 5.9E+02 0.013 27.1 11.5 150 159-318 47-204 (1038)
480 cd00280 TRFH Telomeric Repeat 33.8 2.5E+02 0.0055 22.6 12.7 48 265-312 85-139 (200)
481 PRK10941 hypothetical protein; 33.8 3.1E+02 0.0068 23.6 10.2 79 145-226 183-263 (269)
482 COG0819 TenA Putative transcri 33.5 2.8E+02 0.0061 23.0 8.1 26 207-232 102-127 (218)
483 PRK07764 DNA polymerase III su 33.4 5.6E+02 0.012 26.4 12.0 84 160-246 182-279 (824)
484 TIGR03581 EF_0839 conserved hy 32.1 1.4E+02 0.0031 24.6 5.3 34 230-263 137-177 (236)
485 COG4003 Uncharacterized protei 32.1 1.6E+02 0.0035 19.9 5.0 25 328-352 38-62 (98)
486 smart00386 HAT HAT (Half-A-TPR 32.0 75 0.0016 16.0 3.9 11 196-206 4-14 (33)
487 COG2812 DnaX DNA polymerase II 31.9 4.7E+02 0.01 25.1 11.2 83 127-214 183-280 (515)
488 PF09868 DUF2095: Uncharacteri 31.8 2E+02 0.0044 20.9 5.5 21 224-244 71-91 (128)
489 COG2178 Predicted RNA-binding 31.8 2.8E+02 0.0061 22.5 9.7 18 332-349 132-149 (204)
490 PRK13342 recombination factor 31.6 4.2E+02 0.0091 24.5 18.7 170 123-312 152-333 (413)
491 TIGR02710 CRISPR-associated pr 31.5 4.1E+02 0.0089 24.3 11.6 26 188-213 139-164 (380)
492 PF04190 DUF410: Protein of un 31.5 3.3E+02 0.0072 23.3 19.1 82 213-313 89-170 (260)
493 KOG3364 Membrane protein invol 31.3 2.4E+02 0.0052 21.5 10.6 67 246-313 29-100 (149)
494 COG0790 FOG: TPR repeat, SEL1 31.2 3.4E+02 0.0074 23.3 20.9 199 157-367 55-283 (292)
495 TIGR03362 VI_chp_7 type VI sec 31.1 2.5E+02 0.0054 24.7 7.2 59 291-349 220-278 (301)
496 KOG2297 Predicted translation 31.0 3.8E+02 0.0081 23.7 14.2 69 191-269 267-341 (412)
497 COG2812 DnaX DNA polymerase II 31.0 4.9E+02 0.011 25.0 9.7 87 158-249 179-280 (515)
498 PF14669 Asp_Glu_race_2: Putat 30.8 3E+02 0.0064 22.5 14.3 171 137-308 2-205 (233)
499 PF04762 IKI3: IKI3 family; I 30.8 6.5E+02 0.014 26.4 16.0 225 98-347 681-927 (928)
500 PF08870 DUF1832: Domain of un 30.6 1.4E+02 0.0031 21.7 4.8 17 161-177 7-23 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-54 Score=423.17 Aligned_cols=327 Identities=18% Similarity=0.220 Sum_probs=265.1
Q ss_pred ccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHH
Q 017234 35 TSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEY 111 (375)
Q Consensus 35 ~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~ 111 (375)
|+..+||.||.+|++.++. .+.++++.|.+.|+.||..+|+++|.+ ++.|+.++|.++ +++|...+. ||..+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v----f~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV----FHEMVNAGVEANVHTF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHcCCCCCHHHH
Confidence 7788888888888888766 668888888888888888888888888 688888888888 667776665 788888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCCChhcHHHHHHHHH
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS-EEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~ll~~~~ 190 (375)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|++++.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888642 467788888888888888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
+.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.|+..+ |+.+|.+|++.|++++|.++|++|.+.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt--yN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST--MNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888888888788887777 888888888888888888888888888
Q ss_pred CCCccCchhHHHHHHHH
Q 017234 351 GLSFKSAEDVEMESWFI 367 (375)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (375)
|+.||..++..+++.+.
T Consensus 749 Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 749 GLCPNTITYSILLVASE 765 (1060)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88777666655555443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-53 Score=418.59 Aligned_cols=327 Identities=15% Similarity=0.164 Sum_probs=315.0
Q ss_pred CCCCcccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-C
Q 017234 30 TNTNSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-S 106 (375)
Q Consensus 30 ~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~ 106 (375)
..+..|+..+||.||.+|++.+.. ++.++|++|.+.|+.||..+|+++|.+ ++.|++++|.++ +++|...+. |
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l----f~~M~~~Gv~P 540 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA----YGIMRSKNVKP 540 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH----HHHHHHcCCCC
Confidence 457889999999999999999977 889999999999999999999999999 899999999999 788887776 9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHH--CCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEA--QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 184 (375)
|..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.|+..+|+.
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tyns 619 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTI 619 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHH
Confidence 999999999999999999999999999986 68899999999999999999999999999999999 899999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
+++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.|+..+ |+.++.+|++.|++++|.++|
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T--y~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT--YSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhCCCCccCchhHHHH
Q 017234 345 GRMGKQGLSFKSAEDVEME 363 (375)
Q Consensus 345 ~~m~~~~~~~~~~~~~~~~ 363 (375)
++|.+.|+.|+...+..++
T Consensus 778 ~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHH
Confidence 9999999988766555554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-48 Score=374.84 Aligned_cols=316 Identities=15% Similarity=0.179 Sum_probs=233.5
Q ss_pred CCcccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHH
Q 017234 32 TNSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLD 109 (375)
Q Consensus 32 ~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~ 109 (375)
+..|+..+|+.++.+|++.+.. .+.+++..|.+.|+.||..+||.++.. ++.|++++|.++ |++|. .||..
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l----f~~m~---~~~~~ 190 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL----FDEMP---ERNLA 190 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH----HhcCC---CCCee
Confidence 3567888888888888888766 568888888888888888888888888 788888888888 56664 37888
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+ .|+.||..+|+.|+.+|
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~-~g~~~d~~~~n~Li~~y 269 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFVSCALIDMY 269 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH-hCCCccceeHHHHHHHH
Confidence 88888888888888888888888888888877777777777766666666666666666666 56667777777777777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (375)
++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 270 ~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 777777777777777643 4677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ |+..+ ||++|.+|++.|+.++|.++|++|.+
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t--~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS--WNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee--HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776654 34444 77777777777777777777777777
Q ss_pred CCCCccCchhHHHHHH
Q 017234 350 QGLSFKSAEDVEMESW 365 (375)
Q Consensus 350 ~~~~~~~~~~~~~~~~ 365 (375)
.|+.||..+...+++.
T Consensus 420 ~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 420 EGVAPNHVTFLAVLSA 435 (697)
T ss_pred hCCCCCHHHHHHHHHH
Confidence 7776655554444443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=369.68 Aligned_cols=298 Identities=15% Similarity=0.202 Sum_probs=202.9
Q ss_pred CCCcccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CC
Q 017234 31 NTNSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SC 107 (375)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~ 107 (375)
.+..|+..+||.|++.+++.+.. +|.++|++|. .||..+||++|.+ ++.|++++|.++ +++|...+. ||
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~l----f~~M~~~g~~p~ 223 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFAL----FREMWEDGSDAE 223 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHH----HHHHHHhCCCCC
Confidence 46778888889999888888866 7788888884 5888889888888 788888888888 556654443 44
Q ss_pred -----------------------------------HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHH
Q 017234 108 -----------------------------------LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (375)
Q Consensus 108 -----------------------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (375)
..+|+++|.+|++.|++++|.++|++|. ++|..+||.+|.+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~ 299 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHH
Confidence 4455556666666666666666666664 3466666666666
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
|++.|++++|.++|++|.+ .|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|++|+++|++.|++++
T Consensus 300 y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 6666666666666666665 566666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666666664 3566666666666666666666666666666666666666666666666666666666666666654
Q ss_pred -CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 313 -CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 313 -~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
.|+.|+..+ |+.++++|++.|++++|.+++++|
T Consensus 455 ~~g~~p~~~~--y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 455 NHRIKPRAMH--YACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred hcCCCCCccc--hHhHHHHHHhcCCHHHHHHHHHHC
Confidence 466666655 666666666666666666666554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-46 Score=370.52 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=188.2
Q ss_pred cccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CCHHH
Q 017234 34 STSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDE 110 (375)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~ 110 (375)
.|+..+||.+|.+|++.+.. ++.++|.+|...|+.||..||+.+|.+ ++.|+.+.+.++ +..|...|. ||..+
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l----~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM----HGYVVKTGFAVDVSV 325 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHhCCccchHH
Confidence 45666666666666666654 666666667666667776666666666 566666666666 455555554 66666
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
|++++.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+ .|+.||..||+.++.+|+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHh
Confidence 6666666666666666666666664 35666666666666666666666666666666 566666666666666666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---------------------------
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--------------------------- 243 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------------------- 243 (375)
+.|++++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.+.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666665555421
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 244 ---GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 244 ---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++||++|++.|++++|.++|+.+ .++..
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 2345555555555555555555555555544444444444333344444444444444444444443 23334
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHHH
Q 017234 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESW 365 (375)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 365 (375)
+ ||++|.+|++.|+.++|.++|++|.+.|+.||..++..+++.
T Consensus 556 s--~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 556 S--WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred h--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 4 555555555555555555566555555555555554444443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-45 Score=366.68 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=266.0
Q ss_pred cccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccH-----------------------------------HHH
Q 017234 34 STSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSW-----------------------------------DAL 77 (375)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~-----------------------------------~~l 77 (375)
.|+..+||.+|.+|++.+.. ++.++|++|...|+.||..|| |+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46777888888888887765 677777777777777766665 555
Q ss_pred HHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 78 ITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 78 i~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
|.+ ++.|++++|.++ |++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 229 i~~y~k~g~~~~A~~l----f~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 229 ITMYVKCGDVVSARLV----FDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred HHHHhcCCCHHHHHHH----HhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 555 566777777777 56664 3678888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
|+.+.|.+++..|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|.++
T Consensus 302 g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 302 GDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred CChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 888888888888888 78889999999999999999999999999988863 6888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 017234 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (375)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+.
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--- 453 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--- 453 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHHHHH
Q 017234 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESWFI 367 (375)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 367 (375)
+..+ |+.+|.+|++.|+.++|..+|++|.. ++.||..+..++++.+.
T Consensus 454 -d~vs--~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 454 -DVIS--WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred -Ceee--HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 4445 99999999999999999999999975 58777777766666543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.7e-20 Score=168.91 Aligned_cols=290 Identities=14% Similarity=0.035 Sum_probs=235.7
Q ss_pred cchHHHHHHHhhhccCCC-CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-C---CHHHHHHHHHHHhccCChh
Q 017234 52 VSQIKTTLDSVDIFAFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-S---CLDEYACLIALSGKVQNVP 125 (375)
Q Consensus 52 ~~~~~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~---~~~~~~~li~~~~~~~~~~ 125 (375)
..++...|.++... .| +..+|..+... ...|++++|...+ +.+..... + ...++..+...|.+.|+++
T Consensus 51 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~----~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 51 PDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIH----QNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34788999999764 34 34567777777 7999999999994 55544332 2 2357889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCCHHHHHHH
Q 017234 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKW 201 (375)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~ 201 (375)
.|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+ .+-.+. ...+..+...+.+.|++++|...
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999998763 45678999999999999999999999999987 322221 12355677788899999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017234 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281 (375)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 281 (375)
|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9999886533 567888899999999999999999999997643333567889999999999999999999999876 4
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHhCCCCccC
Q 017234 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL---SDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 282 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
|+...+..++..+.+.|++++|..+++++.+. .|+... ++.++..+.. .|+.+++..++++|.++++.|+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~--~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG--FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH--HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 67777788999999999999999999998875 577766 7777877764 56899999999999998887654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.4e-19 Score=163.55 Aligned_cols=268 Identities=14% Similarity=0.068 Sum_probs=222.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC---HhHHHHHHHHHH
Q 017234 78 ITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACL 154 (375)
Q Consensus 78 i~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~ 154 (375)
+.....|++++|... +.++...++.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.
T Consensus 43 ~~~~~~~~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 43 LNFLLNEQPDKAIDL----FIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHhcCChHHHHHH----HHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 333688999999999 6677777777888999999999999999999999999987642222 356889999999
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHccCCh
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDF 230 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~ 230 (375)
+.|++++|..+|+++.+. -+++..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999872 3456778999999999999999999999999987654322 2456777888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+-.....+++.++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 33466788888999999999999999999987642222467889999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCch
Q 017234 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (375)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 358 (375)
.+.. |+... +..++..+.+.|++++|..+++++.+. .|+.+.
T Consensus 276 ~~~~--p~~~~--~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~ 317 (389)
T PRK11788 276 LEEY--PGADL--LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG 317 (389)
T ss_pred HHhC--CCchH--HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH
Confidence 8854 55555 688999999999999999999999876 344443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=1.3e-18 Score=175.19 Aligned_cols=318 Identities=13% Similarity=0.031 Sum_probs=257.4
Q ss_pred cccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 017234 36 SVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~ 113 (375)
+...+..+...+...++. ++.++++.+.... ..+...|..+... ...|++++|... ++++....+.+...+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS----FKKLLALQPDSALALLL 640 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCChHHHHH
Confidence 445666777888888866 7788888886433 3456778888888 799999999999 55665556667888999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 193 (375)
+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.++++.+.+ . .+++...+..+...+...|
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCC
Confidence 9999999999999999999998764 44678999999999999999999999999987 3 3566778888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
++++|.+.|+++.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999998875 444777888999999999999999999998875 5567888889999999999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
++.+.. +.+..+++.+...+...|+ ++|...+++..+.. |+.... +..+...+...|++++|..+|+++.+.+
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~a~~~~-- 867 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAI-LDTLGWLLVEKGEADRALPLLRKAVNIA-- 867 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 998875 5678889999999999999 88999999988754 333322 6778888999999999999999999865
Q ss_pred ccCchhHHHHHHHHHHhh
Q 017234 354 FKSAEDVEMESWFIWKVG 371 (375)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (375)
|..+.....+....+..|
T Consensus 868 ~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 868 PEAAAIRYHLALALLATG 885 (899)
T ss_pred CCChHHHHHHHHHHHHcC
Confidence 446665555555544443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1e-17 Score=168.79 Aligned_cols=231 Identities=13% Similarity=0.083 Sum_probs=115.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
.+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++.+.|++++|...|+++.+. .+.+...+..+...+
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 33333344444444444444444443321 223444444444444444444444444444431 122333344444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (375)
.+.|++++|..+|+++.+.... +..++..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 4445555555555444443321 34445555555555555555555555554443 234445555555555666666666
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
..++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+.... +... +..+...|...|++++|...|+++.+
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVL--RTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH--HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6666655542 33355555666666666666666666666553321 1222 56666666667777777777777765
Q ss_pred C
Q 017234 350 Q 350 (375)
Q Consensus 350 ~ 350 (375)
.
T Consensus 799 ~ 799 (899)
T TIGR02917 799 K 799 (899)
T ss_pred h
Confidence 4
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=5.8e-16 Score=148.91 Aligned_cols=297 Identities=10% Similarity=0.030 Sum_probs=185.5
Q ss_pred HHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 017234 41 NPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119 (375)
Q Consensus 41 ~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~ 119 (375)
-.++-.+.+.|+. ++..++.......+.+....|...+.....|++++|... +++.....+.+...+..+...+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~----l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQV----VNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHH----HHHHHHhCCCChHHHHHHHHHHH
Confidence 3444555666655 667777777666666655555555444677888888877 55666666666777777777777
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 199 (375)
+.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHH
Confidence 7788888888777777652 2345667777777777777777777777665421 1222222222 3356667777777
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 017234 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR----VKSFLKFL 275 (375)
Q Consensus 200 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~ 275 (375)
..++.+.+....++...+..+..++...|++++|...+++..+.+ +.+...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 777776665433344444455566667777777777777766654 2345556666666666776664 56666666
Q ss_pred HhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 276 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.+.. +.+..++..+...+...|++++|...+++..+.. |+.... +..+..++.+.|++++|...|+++.+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a-~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYV-RAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6543 3345566666666777777777777776666543 333222 455666666677777777777666654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=9.6e-15 Score=140.53 Aligned_cols=296 Identities=7% Similarity=0.004 Sum_probs=231.3
Q ss_pred hHHHHHHhhcCCcc-hHHHHHHHhhhccCCCC-cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 40 SNPLISRLLQVPVS-QIKTTLDSVDIFAFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 40 ~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
...+.......++. .+...++.+.. ..|+ ...|..+... ...|++++|... +++.....+.+...+..+..
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~----l~~Al~l~P~~~~a~~~la~ 152 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADL----AEQAWLAFSGNSQIFALHLR 152 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCcHHHHHHHHH
Confidence 33333444445554 77888888865 4454 3345555555 699999999999 56666666678889999999
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHH
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 196 (375)
.+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+ ..-.++...+..+..++.+.|+++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHH
Confidence 999999999999999988766422 33344333 347889999999999999877 322233444555677889999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017234 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS----VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272 (375)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (375)
+|...+++..+.... +...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 230 eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999987654 78888899999999999986 899999998864 345778999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
++..+.. +.+...+..+..++.+.|++++|...++.+...+ |+.... +..+..++...|++++|...|++..+.
T Consensus 308 ~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~-~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 308 QQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW-NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998864 4456678888999999999999999999998854 443321 444567889999999999999998876
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=4.6e-14 Score=121.04 Aligned_cols=307 Identities=16% Similarity=0.151 Sum_probs=236.9
Q ss_pred cccchHHHHHHhhcCCcchHHHHHHHhhhccCCCCcccHHHHHHH-H--hcCChHHHHHHHHHHHHHhhcCC--------
Q 017234 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-L--QSSSPKKAQLVLEWRLDKMLKGN-------- 104 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~a~~~~~~~~~~m~~~~-------- 104 (375)
++.+-|.|+.-..+..-.++.-+++.|.+.|+.-+...--.|+.. + .+.++.-+..- | |-.|...+
T Consensus 115 ~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~--~-Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 115 QVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWE--E-FVGMRNFGEDSTSSWK 191 (625)
T ss_pred hhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHH--H-Hhhccccccccccccc
Confidence 344667777666665566788899999999888887777777766 3 33333322221 1 33444333
Q ss_pred ------------CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 017234 105 ------------ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172 (375)
Q Consensus 105 ------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (375)
+....+|.++|.++|+-.+.+.|.+++.+-.+...+.+..+||.+|.+-.-... .++..+|..
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis- 266 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS- 266 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-
Confidence 235788999999999999999999999999988889999999999986554332 789999998
Q ss_pred CCCCCChhcHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH-HHHHHHHHH----HC
Q 017234 173 EEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS-VDRFYEEMM----SL 243 (375)
Q Consensus 173 ~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~----~~ 243 (375)
..+.||..|||+++.+..+-|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++. .+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 7899999999999999999998764 66788999999999999999999999999998754 444444443 23
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCcCH---HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 244 GIIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKINE---NMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 244 ~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
...| |...|...+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|.....+.....++.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333 34567788889999999999999987765431 23332 3466778888999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
.-..|+..+ ...++++....|.++-.-+++..++..|.
T Consensus 427 ~~y~p~~~~--m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 427 SAYFPHSQT--MIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred ceecCCchh--HHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 777787777 78888999999999999899888888774
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=5.2e-13 Score=128.71 Aligned_cols=294 Identities=9% Similarity=-0.069 Sum_probs=223.5
Q ss_pred HHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 017234 45 SRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122 (375)
Q Consensus 45 ~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~ 122 (375)
..+.+.++. +|.+.+..... ..|+...|..+..+ .+.|++++|++. +++.....+.+..+|..+..++...|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~----~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVED----TTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 344455555 67777877654 45666778777777 799999999999 55565666678889999999999999
Q ss_pred ChhHHHHHHHHHHHCC----------------------------CCc-CHhHHHHH------------------------
Q 017234 123 NVPFAMHVFTSMEAQG----------------------------IKP-DSAVFNSL------------------------ 149 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g----------------------------~~p-~~~~~~~l------------------------ 149 (375)
++++|..-|......+ ..| +...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 9999987654432211 000 00000000
Q ss_pred ------HHHH------HcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh
Q 017234 150 ------ICAC------LCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216 (375)
Q Consensus 150 ------i~~~------~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (375)
+... ...+++++|.+.|+...+.....| ....+..+...+...|++++|...|++..+..+. +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHH
Confidence 0000 112578899999999987322334 3456788888899999999999999999886533 5678
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 296 (375)
|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++.++.. +.+...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 8899999999999999999999998864 4457889999999999999999999999998864 4457778888999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.|++++|...|++..+.. |+.... |+.+...+...|++++|+..|++..+.
T Consensus 446 ~g~~~eA~~~~~~al~~~--P~~~~~-~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF--PEAPDV-YNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CCCHHHHHHHHHHHHHhC--CCChHH-HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999999999988743 443222 888999999999999999999998865
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4e-13 Score=115.33 Aligned_cols=237 Identities=14% Similarity=0.198 Sum_probs=159.0
Q ss_pred cccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCC-CCHH
Q 017234 34 STSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNE-SCLD 109 (375)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~ 109 (375)
..+..++..+|.++|+.... +|.+++.+-.....+-+..+||.+|.+ +..| .++ +.+|.+... ||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~L----v~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKL----VAEMISQKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHH----HHHHHHhhcCCchH
Confidence 44556899999999998754 889999998888888999999999988 4444 344 667766665 9999
Q ss_pred HHHHHHHHHhccCChhH----HHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHH-HHHHHHHHHhC---CCCCC----
Q 017234 110 EYACLIALSGKVQNVPF----AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSS---EEYKP---- 177 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~---~~~~~---- 177 (375)
|+|+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... ..++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998766 56777889999999999999999999998887644 44455544431 12233
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCcC---HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAG----FSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 250 (375)
|..-|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|.-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 33446677778888888777777655443221 1111 1223444455555555555555566555544445555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
+...++++....|.++-.-++|..+...|
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 55555555555555555555555554444
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-13 Score=123.95 Aligned_cols=275 Identities=14% Similarity=0.170 Sum_probs=230.3
Q ss_pred CCCC-cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC-H
Q 017234 67 FNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-S 143 (375)
Q Consensus 67 ~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 143 (375)
.+|. ...|+.|--. -.+|+...|++- +++.....+.-...|-.|-..|...+.+++|...+.+.... .|+ .
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~----y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQH----YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHH----HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 4454 4567777666 488899999988 55666666656778999999999999999999999888765 454 5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
..+..+...|...|.+|-|+..|++..+ +.|+ ...|+.|.+++-..|++.+|++.+.+....... ...+.+.|..
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 6888899999999999999999999987 3455 468999999999999999999999998887543 6788999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCCh
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRV 300 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 300 (375)
.|...|.+++|..+|+...+- .|. ...++.|...|-..|++++|...|++.+. +.|+ ...|+.+...|...|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999988874 454 46789999999999999999999999987 5666 46799999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhH
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 360 (375)
+.|.+.+.+.+. +.|..... ++.|...|-..|++.+|++-+++.. .+.||.|+..
T Consensus 439 ~~A~q~y~rAI~--~nPt~AeA-hsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~ 493 (966)
T KOG4626|consen 439 SAAIQCYTRAIQ--INPTFAEA-HSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAY 493 (966)
T ss_pred HHHHHHHHHHHh--cCcHHHHH-HhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhh
Confidence 999999999887 44643333 8999999999999999999999987 5688888754
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=7.6e-13 Score=127.53 Aligned_cols=255 Identities=13% Similarity=-0.018 Sum_probs=204.1
Q ss_pred CChHHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 84 SSPKKAQLVLEWRLDKMLKGN---ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 84 ~~~~~a~~~~~~~~~~m~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
+++++|.+.| ++....+ +.+...|+.+...+...|++++|...+++..+.. +-+...|..+...+...|+++
T Consensus 308 ~~y~~A~~~~----~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 308 ESYEEAARAF----EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhHHHHHHHH----HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 5788888885 4444332 3456778888899999999999999999998763 224668889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+|...|++..+. -+.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++.
T Consensus 383 eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 383 KAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999873 2445678889999999999999999999999987643 6788888999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE------NMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
.+.. +.+...++.+...+...|++++|...|++..+..-..+. ..++.....+...|++++|.+++++..+.+
T Consensus 460 l~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 460 KKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8763 345678889999999999999999999998775311111 112222333445799999999999988754
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
|+.... +..+...+.+.|++++|+..|++..+.
T Consensus 539 --p~~~~a-~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 539 --PECDIA-VATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --CCcHHH-HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444332 888999999999999999999998765
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.63 E-value=4.3e-12 Score=130.40 Aligned_cols=305 Identities=10% Similarity=0.014 Sum_probs=202.2
Q ss_pred hhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH-----------
Q 017234 47 LLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC----------- 113 (375)
Q Consensus 47 l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~----------- 113 (375)
+.+.++. ++.+.+++...... .+...+..+... ...|++++|.+.|+ +.....+.+...+..
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~----~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ----QALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 3444544 67777777755422 123344445555 68888999988854 443333333333332
Q ss_pred -------------------------------HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHH
Q 017234 114 -------------------------------LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162 (375)
Q Consensus 114 -------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 162 (375)
+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 2334456788888888888887764 22566777888888888999999
Q ss_pred HHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----------------------------------
Q 017234 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA---------------------------------- 208 (375)
Q Consensus 163 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------------------------- 208 (375)
...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 515 ~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 98888887622 223333333333334444444444444332110
Q ss_pred -----CCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 017234 209 -----GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283 (375)
Q Consensus 209 -----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 283 (375)
..+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~ 670 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDS 670 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCC
Confidence 012355567778888889999999999999998874 4457788889999999999999999999887643 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-CCCCccCchh
Q 017234 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV---LLHFFSGIIRLYALSDRLDDVEYSVGRMGK-QGLSFKSAED 359 (375)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~ 359 (375)
..++..+..++...|++++|.++++.+......... ....+..+...+...|++++|...|++... .|+.|..|..
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 566777888888999999999999998775432211 112256667888899999999999988754 5677766665
Q ss_pred HH
Q 017234 360 VE 361 (375)
Q Consensus 360 ~~ 361 (375)
..
T Consensus 751 ~~ 752 (1157)
T PRK11447 751 ND 752 (1157)
T ss_pred ch
Confidence 33
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.4e-15 Score=129.60 Aligned_cols=258 Identities=19% Similarity=0.138 Sum_probs=112.3
Q ss_pred HHH-HhcCChHHHHHHHHHHHHH-hhcC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHH
Q 017234 78 ITS-LQSSSPKKAQLVLEWRLDK-MLKG-NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154 (375)
Q Consensus 78 i~~-~~~~~~~~a~~~~~~~~~~-m~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 154 (375)
... +..|++++|.++ +++ .... .+.|...|..+...+...++++.|.+.++++.+.+.. ++..+..++.. .
T Consensus 15 A~~~~~~~~~~~Al~~----L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEV----LKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-c
Confidence 444 699999999999 533 3333 2456677777777888899999999999999987633 67778888887 7
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHccCChHHH
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
..+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999887662 3667778888999999999999999999987543 345788899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.+.|++..+.. +.|......++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|...+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999874 2357788889999999999999999998887764 566778889999999999999999999998874
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
. |+.... ...+.+++...|+.++|.++.++..+
T Consensus 244 ~--p~d~~~-~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 N--PDDPLW-LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp S--TT-HHH-HHHHHHHHT-----------------
T ss_pred c--cccccc-cccccccccccccccccccccccccc
Confidence 4 433322 67889999999999999999987654
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=4.6e-13 Score=119.98 Aligned_cols=298 Identities=10% Similarity=0.044 Sum_probs=165.4
Q ss_pred cccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCC-CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCC---
Q 017234 34 STSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC--- 107 (375)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~--- 107 (375)
..-..+|.-+-+.+-..|.. ++..+++.+.. .+| .+..|..+..+ ..+|+.+.|.+.|. +-.+.++..
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~----~alqlnP~l~ca 186 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFF----EALQLNPDLYCA 186 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHH----HHHhcCcchhhh
Confidence 33455788888888888866 77888887754 455 35567667777 58888888888852 222222222
Q ss_pred -------------------------------HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHc
Q 017234 108 -------------------------------LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLC 155 (375)
Q Consensus 108 -------------------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 155 (375)
..+|+.|...+-..|++..|+.-|++..+. .|+ ...|-.|...|-.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 222333333444444444444444444433 222 3344555555555
Q ss_pred CCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHH
Q 017234 156 SGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (375)
Q Consensus 156 ~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 234 (375)
.+.+++|+.-|.+... ..|+ ...+..+...|...|+.+.|...+++..+..+. =+..|+.|..++-..|++.+|.
T Consensus 265 ~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHH
Confidence 5555555555554443 1232 233444444455555555555555555554221 2455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
+.|.+..... .-.....+.|...+...|.++.|..+|....+- .|. ...++.|...|-+.|++++|...+++...
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 6666665542 222445556666666666666666666665542 232 33456666666666666666666666655
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+.|..... |+.+...|-..|+.+.|.+.+.+.+.
T Consensus 417 -I~P~fAda-~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 417 -IKPTFADA-LSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred -cCchHHHH-HHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 44543332 66666666666666666666666554
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.61 E-value=7.5e-12 Score=128.62 Aligned_cols=257 Identities=10% Similarity=-0.002 Sum_probs=156.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHH-----------
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL----------- 149 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l----------- 149 (375)
.+.|++++|... +++.....+.+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 362 ~~~g~~~eA~~~----~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 362 LKANNLAQAERL----YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 366677777777 344444445556666677777777777777777777776542 1122222222
Q ss_pred -------------------------------HHHHHcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHH
Q 017234 150 -------------------------------ICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDA 197 (375)
Q Consensus 150 -------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 197 (375)
...+...|++++|++.|++..+. .| +...+..+...|.+.|++++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 22333456666666666666652 23 34455566666777777777
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC----------------------------------
Q 017234 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---------------------------------- 243 (375)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------------------------- 243 (375)
|...+++..+.... +...+..+...+...|+.++|...++.+...
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777766654322 3332222222233333333333333221100
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc
Q 017234 244 -----GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318 (375)
Q Consensus 244 -----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 318 (375)
..+++...+..+...+.+.|++++|...++++.+.. +.+...+..+...|...|++++|.+.++.+.+.. |+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~ 669 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--ND 669 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CC
Confidence 012334455566777778888888888888887764 4467778888888888899999998888877643 33
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.... +..+..++...|++++|.++++++...
T Consensus 670 ~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNT-QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHH-HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2222 556777788889999999999888764
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.6e-11 Score=111.60 Aligned_cols=293 Identities=9% Similarity=0.027 Sum_probs=211.7
Q ss_pred hHHHHHHhhcC--Ccc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHH--HHHH
Q 017234 40 SNPLISRLLQV--PVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYAC 113 (375)
Q Consensus 40 ~~~ll~~l~~~--~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~--~~~~ 113 (375)
...+..++... |+. ++.+.+..-......|... |-....+ ...|+++.+.+. +.++.+.. |+.. ..-.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~-~llaA~aA~~~g~~~~A~~~----l~~A~~~~-~~~~~~~~l~ 158 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVN-YLLAAEAAQQRGDEARANQH----LERAAELA-DNDQLPVEIT 158 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHCCCHHHHHHH----HHHHHhcC-CcchHHHHHH
Confidence 34445444333 443 5555555443332223222 2222333 699999999999 55655433 3332 2224
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh------hcHHHHHH
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS------KTYDAFIS 187 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~ll~ 187 (375)
....+...|+++.|.+.++++.+.. +-++.....+...|.+.|++++|.+++..+.+.....+.. .+|..++.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999998876 4468889999999999999999999999999833222221 13344444
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~ 312 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQ 312 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHH
Confidence 4445556677777777765543 347888999999999999999999999999884 455422 23444456699999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
+.+..+...+.. +-|...+..+.+.+.+.|++++|.+.|+...+. .|+... |..+...+.+.|+.++|.+++++-
T Consensus 313 al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~--~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 313 LEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYD--YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998764 556777889999999999999999999999884 577777 788999999999999999999887
Q ss_pred Hh
Q 017234 348 GK 349 (375)
Q Consensus 348 ~~ 349 (375)
..
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 54
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.1e-14 Score=126.56 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=116.1
Q ss_pred HHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHH-HHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 017234 44 ISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDA-LITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120 (375)
Q Consensus 44 l~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~-li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~ 120 (375)
-..+.+.++. +|.+++..-......|+...|-. +... ...++.+.|.+. ++++...+..++..+..++.. ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~a----y~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEA----YEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccc-cc
Confidence 4555566654 77888865544433344444444 4434 588899999999 566666666677778888888 79
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHH
Q 017234 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 200 (375)
.+++++|.+++....+. .+++..+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999887665 3677788889999999999999999999988644456778888899999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017234 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (375)
Q Consensus 201 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 280 (375)
.+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|...+++..+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999997644 68889999999999999999999998887764 4555678889999999999999999999998754
Q ss_pred CcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 281 KINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 281 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
+.|+.+...+..++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5588889999999999999999999987754
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=9.9e-11 Score=115.28 Aligned_cols=306 Identities=9% Similarity=-0.012 Sum_probs=173.5
Q ss_pred chHHHHHHhhcCCcc-hHHHHHHHhhhccCCCC-cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 017234 39 SSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (375)
Q Consensus 39 ~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li 115 (375)
.+..+-..+...++. ++.+.++..... .|+ ...+..+... ...|++++|... +++.....+.+.. +..+.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~----l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVK----AKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCCCHH-HHHHH
Confidence 345555555555544 556666665432 333 2233344444 577777777777 4555555555555 77777
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHH--------------------------------
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-------------------------------- 163 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-------------------------------- 163 (375)
.++...|+.++|+..+++..+.. +-+...+..+..++...|..++|+
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 77777777777777777777653 223444445555555444444333
Q ss_pred --------------HHHHHHHhCCCCCCChh-cHH----HHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHH
Q 017234 164 --------------SLFEIMVSSEEYKPNSK-TYD----AFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHG 223 (375)
Q Consensus 164 --------------~~~~~m~~~~~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~ 223 (375)
+.++.+.+...-.|+.. .+. ..+.++...|++++|...|+++.+.+.+ |+. .-..+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 33333332111112211 111 1123345567777788778777766532 221 12224567
Q ss_pred HHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCcC---HHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----------WKIN---ENM 286 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~---~~~ 286 (375)
|...|++++|+..|+++....... .......+..++...|++++|..+++.+.+.. -.|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 777777888877777776542111 12345556666777777777777777776542 0123 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCch
Q 017234 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (375)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 358 (375)
+..+...+...|+.++|+++++++.... |+... .+..+...+...|++++|++.+++..+. .|+.+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~-l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~ 428 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQG-LRIDYASVLQARGWPRAAENELKKAEVL--EPRNIN 428 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChH
Confidence 4556667777777777777777776643 43322 2667777777777777777777777654 344444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=4.1e-11 Score=117.92 Aligned_cols=308 Identities=9% Similarity=-0.006 Sum_probs=218.5
Q ss_pred chHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 39 SSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 39 ~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
....+...+...++. ++...+++.... .|+...|..+... ...|++++|+.. +++.....+.+...+..+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~----l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRA----MTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHH
Confidence 445555666777755 778888888654 4433226666666 689999999999 56666666667777777777
Q ss_pred HHhccCChhHHHHHHH----------------------------------------------HHHHC-CCCcCHh-HH--
Q 017234 117 LSGKVQNVPFAMHVFT----------------------------------------------SMEAQ-GIKPDSA-VF-- 146 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~----------------------------------------------~m~~~-g~~p~~~-~~-- 146 (375)
.+...++.+.|+..++ .+.+. ...|+.. .+
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 7766666665554443 33322 1112211 11
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHhCCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc---CHHhHHHH
Q 017234 147 --NSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV---NVQTYESL 220 (375)
Q Consensus 147 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l 220 (375)
...+..+...|++++|+..|+.+.+ .+- .|+. .-..+..+|...|++++|...|+++.+..... .......+
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 1113345677999999999999988 331 1322 22235778999999999999999987754221 13456677
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGI-----------IPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 286 (375)
..++...|++++|.++++.+..... .|+ ...+..+...+...|+.++|..+++++.... +.+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 7788999999999999999987531 123 2345667778889999999999999998764 556788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhH
Q 017234 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360 (375)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 360 (375)
+..+...+...|++++|++.+++..+.. |+.... +-.....+.+.|++++|..+++++++. .|+.+...
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l-~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~ 464 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE--PRNINL-EVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 9999999999999999999999998854 654433 556666899999999999999999975 45555443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.56 E-value=4.9e-11 Score=118.26 Aligned_cols=237 Identities=14% Similarity=0.064 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
+...|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...|+++.. .+|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHH
Confidence 66777777777776 7888888878777765 46654444445555688999999999988765 245555566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
.++.+.|+.++|...+++..+..+. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.+
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 7788889999999999888876532 3333434444455668999999999888876 456778888888888999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
+|...+++..+.. +.+...++.+..++...|++++|...+++..+.. |+.... +..+..++...|++++|...|++
T Consensus 627 eA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a-~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 627 AAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPAL-IRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888764 4456677888888888999999999998888743 444333 77888888999999999999988
Q ss_pred HHhCCCCccCch
Q 017234 347 MGKQGLSFKSAE 358 (375)
Q Consensus 347 m~~~~~~~~~~~ 358 (375)
..+. .|+...
T Consensus 703 Al~l--~P~~a~ 712 (987)
T PRK09782 703 VIDD--IDNQAL 712 (987)
T ss_pred HHhc--CCCCch
Confidence 8854 344433
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.8e-11 Score=110.66 Aligned_cols=296 Identities=7% Similarity=-0.045 Sum_probs=205.0
Q ss_pred chHHHHHHhhcC--Ccc-hHHHHHHHhhhccCCCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHH
Q 017234 39 SSNPLISRLLQV--PVS-QIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEY 111 (375)
Q Consensus 39 ~~~~ll~~l~~~--~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~ 111 (375)
....+..++... |+. .+.+.+....+. .|+...+ .++.+ ...|+++.+.+.+ .+..+..+ +.....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~-~llaA~aa~~~g~~~~A~~~l----~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLN-LIKAAEAAQQRGDEARANQHL----EEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHH-HHHHHHHHHHCCCHHHHHHHH----HHHHHhCCcCchHHH
Confidence 445566666443 333 566666655443 4443333 33433 4789999999995 44433222 223344
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHH-HHHHHH-
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD-AFISGF- 189 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~ll~~~- 189 (375)
-.....+...|+++.|...++.+.+.. +-+..++..+...+.+.|++++|.+++..+.+ .+.. +...+. .-..++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~-~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLF-DDEEFADLEQKAEI 233 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHH
Confidence 456888889999999999999999885 33677899999999999999999999999998 4433 333332 111221
Q ss_pred --HcCCCHHHHHHHHHHHHHCCCC---cCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHh
Q 017234 190 --SSLGNVDAMNKWYAANIAAGFS---VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---LEKVLEGLCA 261 (375)
Q Consensus 190 --~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~ 261 (375)
...+..++..+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. ||... ..........
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcC
Confidence 2223333334455555544321 388899999999999999999999999999874 44332 1112222345
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 017234 262 RRKLDRVKSFLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (375)
.++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+... +..+...+.+.|+.++
T Consensus 312 ~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--LAMAADAFDQAGDKAE 388 (409)
T ss_pred CCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--HHHHHHHHHHcCCHHH
Confidence 678888999888887653 3344 6677899999999999999999996555445677777 7799999999999999
Q ss_pred HHHHHHHHHh
Q 017234 340 VEYSVGRMGK 349 (375)
Q Consensus 340 A~~~~~~m~~ 349 (375)
|.+++++...
T Consensus 389 A~~~~~~~l~ 398 (409)
T TIGR00540 389 AAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.53 E-value=4.9e-11 Score=118.27 Aligned_cols=265 Identities=8% Similarity=-0.013 Sum_probs=201.7
Q ss_pred CcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHH
Q 017234 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (375)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (375)
+...|..+-.++..+++++|+..+. +..... |+......+...+.+.|++++|...|+++... +|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~----~Al~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWL----QAEQRQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHH----HHHHhC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 3455666666655689999999853 322222 45444444555667899999999999998655 5556667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
..++.+.|++++|...+++..+ .. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCC
Confidence 8889999999999999999987 32 2233333344445556699999999999998864 578889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
+++|...|++..... +.+...++.+..++...|+.++|...++...+.. +-+...+..+..++...|++++|+..+++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999875 4456788888889999999999999999998864 45678899999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+.. |+.... .........+..+++.|.+-+++....
T Consensus 703 Al~l~--P~~a~i-~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 703 VIDDI--DNQALI-TPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHhcC--CCCchh-hhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 98854 443221 334455566666777777777665543
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=6.8e-10 Score=108.13 Aligned_cols=147 Identities=7% Similarity=-0.047 Sum_probs=85.2
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (375)
.|.+.|.+..+..+.-....+ .++.. ...|+.++|... +++..............+...+...|+++.|.++++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~----~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDV----YERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHH----HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666442222111233 44444 566777777777 344432222233334444557777777777777777
Q ss_pred HHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 127 kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 127 SSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 777664 224566666677777777777777777777652 4555555444444444555555777777776654
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-10 Score=94.65 Aligned_cols=238 Identities=16% Similarity=0.159 Sum_probs=157.5
Q ss_pred ccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH------hH
Q 017234 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS------AV 145 (375)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~ 145 (375)
..|-.-++.+-++++++|.++ |-+|.+....+..+--+|-+.|.+.|..+.|+++...+.++ ||. ..
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdl----F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lA 109 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDL----FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLA 109 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHH----HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 345555666677778888888 55666666566666777778888888888888888777664 332 23
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC----HHhHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLI 221 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll 221 (375)
.-.|..-|...|-+|.|+++|..+.+ .+ .--......|+..|-...+|++|.++-+++.+.+.++. ..-|.-+.
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~d-e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVD-EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhc-ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 44556667777888888888887776 21 22234566777778888888888888877777665443 23345555
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
..+....+++.|..++.+....+ |+ +..=-.+.......|+++.|.+.|+...+.+...-+.+...|..+|...|+.
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 188 QQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 55566677777777777776653 22 2222234456667778888888887777766555556677777788888888
Q ss_pred HHHHHHHHHHHhCCCCCchH
Q 017234 301 DELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~ 320 (375)
++....+.++.+....++..
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHHccCCccHH
Confidence 77777777776654444443
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.7e-10 Score=104.98 Aligned_cols=250 Identities=8% Similarity=0.011 Sum_probs=196.9
Q ss_pred hcCCcc-hHHHHHHHhhhccCCCCcccHHHHHH--H-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 017234 48 LQVPVS-QIKTTLDSVDIFAFNSSQFSWDALIT--S-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123 (375)
Q Consensus 48 ~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~--~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~ 123 (375)
.+.++. ++...+.++.+ ..|+...+..+.. . ...|++++|... +++..+..+.++.++..+...|.+.|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~----l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHG----VDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHH----HHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 444444 67888888864 5555544443332 3 689999999999 677777788889999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCcCH-------hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHH
Q 017234 124 VPFAMHVFTSMEAQGIKPDS-------AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196 (375)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 196 (375)
++.|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+ ..+.+......+...+...|+.+
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999988755322 2344445555555667777888888765 23567778889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017234 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
+|.+++++..+. +|+... .++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+...
T Consensus 281 ~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998884 345522 23444556699999999999998874 3456678888999999999999999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 277 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 356 ~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 75 69999999999999999999999999987654
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.7e-11 Score=107.69 Aligned_cols=259 Identities=12% Similarity=0.072 Sum_probs=195.1
Q ss_pred HHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHH-HHHHCCCCcCHhHHHHHHHHHH
Q 017234 77 LITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT-SMEAQGIKPDSAVFNSLICACL 154 (375)
Q Consensus 77 li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~ 154 (375)
+-.+ +..+++++|...|+. +.+.....+.+..+|++.+..+-+. -++..+. .+.+.. +-.+.+|-++..+|.
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~-~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSL-VRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhh
Confidence 3344 688888898888543 1222222236788888888776432 2333332 222221 446889999999999
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHH
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
-.++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|......... +-.+|.-+...|.+.++++.|
T Consensus 433 LQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHH
Confidence 99999999999999987 456 6788999998899999999999999887763221 333444566789999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
+-.|++..+-+ +-+.+....+...+-+.|+.++|+++++++....- -|+-.--.-+..+...+++++|...++++++
T Consensus 509 e~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~- 585 (638)
T KOG1126|consen 509 EFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE- 585 (638)
T ss_pred HHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH-
Confidence 99999988765 34566677777788899999999999999987652 3444444456677788999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+.|+.... |..+...|.+.|+.+.|..-|.-+.+.
T Consensus 586 -~vP~es~v-~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 586 -LVPQESSV-FALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred -hCcchHHH-HHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66776665 889999999999999999988887754
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2e-13 Score=84.61 Aligned_cols=50 Identities=34% Similarity=0.598 Sum_probs=32.3
Q ss_pred cCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 017234 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (375)
Q Consensus 212 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (375)
||..+||++|.+|++.|++++|.++|++|++.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.8e-10 Score=96.84 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=137.9
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3456666777777777777777777777652 1334556666777777777777777777777766533 556667777
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
..+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 77777788888888887776642222 23456666677778888888888888877653 33456677777888888888
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
++|...+++..+.. ..+... +..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAES--LWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHH--HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888877652 122222 55667777788888888887777654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=6.1e-10 Score=101.86 Aligned_cols=271 Identities=9% Similarity=-0.029 Sum_probs=190.2
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH--hHHHH
Q 017234 74 WDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS--AVFNS 148 (375)
Q Consensus 74 ~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 148 (375)
+..+..+ +..|+++.|.+.+ .+..+..+.....+-....+..+.|+++.|.+.+.+..+.. |+. ...-.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l----~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~ 158 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLI----AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIA 158 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHH
Confidence 3445555 5899999999994 44444333234445566778889999999999999987653 444 34444
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH-HHHHHH---
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE-SLIHGS--- 224 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~--- 224 (375)
....+...|+++.|...++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 5788889999999999999999832 446678889999999999999999999999998764 333332 111222
Q ss_pred HccCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH-HHHHHHH--HHHcC
Q 017234 225 LKARDFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM-AQKLVKC--YCELG 298 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~--~~~~g 298 (375)
...+..+++.+.+..+..... +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCC
Confidence 233333333445555554421 2377888899999999999999999999998864 34331 1112222 23457
Q ss_pred ChHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCch
Q 017234 299 RVDELEEQLETLTKCNQSPEVL--LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (375)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 358 (375)
+.+.+.+.++...+.. |+.. .. ..++...+.+.|++++|.+.|++.......|+..+
T Consensus 314 ~~~~~~~~~e~~lk~~--p~~~~~~l-l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV--DDKPKCCI-NRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred ChHHHHHHHHHHHHhC--CCChhHHH-HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 7888999998887743 4444 32 56888999999999999999996545445555544
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=4.4e-09 Score=102.55 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=83.0
Q ss_pred HHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHH-H--H-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 42 PLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALI-T--S-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 42 ~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li-~--~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
.++..+...+.. +|...++... .|+...+..++ . . ...|++++|+++ ++++....+.++..+..++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiel----y~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALAL----WQSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCCCCHHHHHHHHH
Confidence 455555555544 6666666664 66555555544 2 2 366999999999 67777777777788888888
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
.+.+.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 889999999999999888776 45555554444444445566568888888877
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.3e-10 Score=108.64 Aligned_cols=265 Identities=10% Similarity=0.003 Sum_probs=188.2
Q ss_pred CcccHHHHHHH-H-----hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------ccCChhHHHHHHHHH
Q 017234 70 SQFSWDALITS-L-----QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG---------KVQNVPFAMHVFTSM 134 (375)
Q Consensus 70 ~~~~~~~li~~-~-----~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m 134 (375)
+...|...+.+ . ..+..++|.+. +++.....+.+...|..+..++. ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~----~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKL----LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHH----HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 44556666666 2 12345688888 55666666666777766665543 334588999999999
Q ss_pred HHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH
Q 017234 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214 (375)
Q Consensus 135 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (375)
.+.+ +-+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+. +.
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 9875 3367888888889999999999999999998721 334567888889999999999999999999987654 33
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVK 292 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 292 (375)
..+..++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...+.++... .|+ ....+.+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 334445555677899999999999987664 34 3455677778888999999999999987654 344 344555666
Q ss_pred HHHHcCChHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 293 CYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
.|...| ++|...++.+.+..- .+.... + +-..|.-.|+-+.+..+ +++.+.|.
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~--~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPG--L--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCch--H--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 777777 477777777655321 222221 3 33346677787777766 88887753
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.8e-10 Score=96.82 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 35566667777777777777777777776553 334566677777777777777777777777752 233445666677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
..+...|++++|.+.+++..+... ......+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 777777788888877777766422 1234556667777778888888888887777653 23455677777777788888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877665 244556666777777788888888877776654
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.1e-10 Score=95.55 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=183.4
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh------cHHHHHHHHHcCC
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK------TYDAFISGFSSLG 193 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~~~~ll~~~~~~~ 193 (375)
-+.+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+.+.+.+.+ .||.. ....|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999863 33556677888999999999999999999998 36542 3346677789999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 269 (375)
-+|.|+++|..+.+.+. --.....-|+..|...++|++|.++-+++.+.+-.+.. ..|..+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999988653 35677889999999999999999999999887644432 45777777777889999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.++....+.+ +-.+..--.+.+.+...|+++.|.+.++.+.+.+ |+....+-..|..+|.+.|+.++....+.++.+
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998875 3344445556688999999999999999999866 444444489999999999999999999999988
Q ss_pred CCCC
Q 017234 350 QGLS 353 (375)
Q Consensus 350 ~~~~ 353 (375)
..-.
T Consensus 278 ~~~g 281 (389)
T COG2956 278 TNTG 281 (389)
T ss_pred ccCC
Confidence 6543
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.9e-09 Score=92.49 Aligned_cols=300 Identities=10% Similarity=0.041 Sum_probs=215.4
Q ss_pred hHHHHHHhhcC--Ccc-hHHHHHHHhhhccCCCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcC-CCCCHHHHH
Q 017234 40 SNPLISRLLQV--PVS-QIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYA 112 (375)
Q Consensus 40 ~~~ll~~l~~~--~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~-~~~~~~~~~ 112 (375)
-..+..++.+- |+. +|.+++..-...+..|-. +.++.+ -..|+.+.+=.. +.+..+. +.++...+-
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l---~~l~aA~AA~qrgd~~~an~y----L~eaae~~~~~~l~v~l 157 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVL---AYLLAAEAAQQRGDEDRANRY----LAEAAELAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHH---HHHHHHHHHHhcccHHHHHHH----HHHHhccCCCchHHHHH
Confidence 34455555443 233 555666555555555533 333333 367777777776 4444433 446777777
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-------hcHHHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-------KTYDAF 185 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~l 185 (375)
+........|+++.|..-.+++.+.+ +.++........+|.+.|++.+...+...+.+ .+.--+. .+|+.+
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHH
Confidence 88888888888888888888887775 34677788888888888888888888888887 5554443 356777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
+.-....+..+.-...+++.... ...++..-.+++.-+.+.|+.++|.++.++..+++..|. -.....+.+.++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCc
Confidence 77766666666666677666544 233566677788888899999999999999888876665 2222355677888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
+.-.+..+.-.+.. +-++-.+.+|...|.+.+.|.+|...|+...+ ..|+..+ |+.+.+++.+.|+..+|.++++
T Consensus 311 ~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~--~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 311 EPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASD--YAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhh--HHHHHHHHHHcCChHHHHHHHH
Confidence 77777777765542 44568889999999999999999999997776 5577777 9999999999999999999999
Q ss_pred HHHhCCCCccCch
Q 017234 346 RMGKQGLSFKSAE 358 (375)
Q Consensus 346 ~m~~~~~~~~~~~ 358 (375)
+....-.+|+.|.
T Consensus 386 e~L~~~~~~~~~s 398 (400)
T COG3071 386 EALLLTRQPNLPS 398 (400)
T ss_pred HHHHHhcCCCCcc
Confidence 9887666666553
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=8e-13 Score=81.85 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=28.0
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1.6e-09 Score=102.94 Aligned_cols=235 Identities=9% Similarity=-0.039 Sum_probs=173.4
Q ss_pred CCCHHHHHHHHHHHhc-----cCChhHHHHHHHHHHHCCCCc-CHhHHHHHHHHHH---------cCCChHHHHHHHHHH
Q 017234 105 ESCLDEYACLIALSGK-----VQNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACL---------CSGDVVTALSLFEIM 169 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m 169 (375)
..+...|...+.+-.. .+++++|...|++..+. .| +...|..+..++. ..+++++|...+++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3566666666666422 23467899999999877 44 4556666655544 234589999999999
Q ss_pred HhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 017234 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249 (375)
Q Consensus 170 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 249 (375)
.+.. +-+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+.. +.
T Consensus 331 l~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 8722 345677778888889999999999999999998644 6778888999999999999999999999987522 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
..+..+...+...|++++|...++++.+..-+-++..+..+..++...|+.++|...++++... .|+.... .+.+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~-~~~l~~ 483 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA-VNLLYA 483 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH-HHHHHH
Confidence 3334445556778999999999999876542224556777888899999999999999988664 3433332 566666
Q ss_pred HHHhhCCHHHHHHHHHHHHhC
Q 017234 330 LYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.|...| +.|...++++.+.
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHhccH--HHHHHHHHHHHHH
Confidence 777777 5788877777653
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3e-09 Score=92.81 Aligned_cols=255 Identities=11% Similarity=0.107 Sum_probs=147.3
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHhccCChhH-HHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLIALSGKVQNVPF-AMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
+.+.+++.|..+ |+++.+..+ .|.++|+.++-.-.....+.- |..++. .. +--+.|+-.+.+-|.-.
T Consensus 273 y~~rDfD~a~s~----Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id----KyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 273 YNQRDFDQAESV----FEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID----KYRPETCCIIANYYSLR 343 (559)
T ss_pred hhhhhHHHHHHH----HHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc----cCCccceeeehhHHHHH
Confidence 466666666666 344444433 456666665544333222211 111111 11 22344555555556666
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
++.++|...|+...+. + +.....|+.+..-|....+...|.+-+...++..+. |-..|-.|..+|.-.+.+.-|+-.
T Consensus 344 ~eHEKAv~YFkRALkL-N-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL-N-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HhHHHHHHHHHHHHhc-C-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHH
Confidence 6777777777777651 1 223455666667777777777777777777666543 667777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----
Q 017234 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK---- 312 (375)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 312 (375)
|++..... +-|...|.+|..+|.+.++.++|...|......| ..+...+..|.+.|-+.++.++|.+.|+.-.+
T Consensus 421 fqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 421 FQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 77666543 3355677777777777777777777777776655 33556677777777777777777766665443
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.|...+.....---|..-+.+.+++++|.........
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1222221111111244555666667666665555443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-09 Score=95.66 Aligned_cols=165 Identities=9% Similarity=0.074 Sum_probs=144.4
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
+.|+..+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|...++...|.+-|+...+-+ +-|-..|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 346667778888888999999999999998754 67889999999999999999999999999875 5677899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHH
Q 017234 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (375)
|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......+-. +... +..|.+.|-+.++.+
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~--l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSA--LVRLAKLYEELKDLN 483 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHH--HHHHHHHHHHHHhHH
Confidence 999999999999999998864 568899999999999999999999999999886543 2233 889999999999999
Q ss_pred HHHHHHHHHHh
Q 017234 339 DVEYSVGRMGK 349 (375)
Q Consensus 339 ~A~~~~~~m~~ 349 (375)
+|...|++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99999987766
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=3.9e-10 Score=102.37 Aligned_cols=247 Identities=11% Similarity=0.053 Sum_probs=189.1
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCC--CcCHhHHHHHHHHHHcCCChHHH
Q 017234 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTA 162 (375)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a 162 (375)
+..+|...| ............+...+..+|-..+++++|.++|+...+... .-+..+|...+-.+-+.= +
T Consensus 334 ~~~~A~~~~----~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~ 405 (638)
T KOG1126|consen 334 NCREALNLF----EKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----A 405 (638)
T ss_pred HHHHHHHHH----HhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----H
Confidence 456777774 344343444557888899999999999999999999987531 126778888776553321 2
Q ss_pred HHH-HHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 163 LSL-FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 163 ~~~-~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
+.. -+++.+. -+-.+.+|.++.++|+-.++.+.|++.|++..+.... ...+|+.+-.-+....++|.|...|+...
T Consensus 406 Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 222 2333331 2445689999999999999999999999999986532 78999999999999999999999999887
Q ss_pred HCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc
Q 017234 242 SLGIIPSIPILEK---VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318 (375)
Q Consensus 242 ~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 318 (375)
. .|...|++ +...|.+.++++.|+-.|+.+.+-+ +-+.+....+...+-+.|+.|+|.+++++....+.+..
T Consensus 483 ~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 G----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred c----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 4 45555554 5567889999999999999998865 44667778888999999999999999999988665443
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
... |. -+..+...+++++|+..++++++-
T Consensus 558 l~~--~~-~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 558 LCK--YH-RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred hhH--HH-HHHHHHhhcchHHHHHHHHHHHHh
Confidence 333 44 356678889999999999999864
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=1.1e-10 Score=108.75 Aligned_cols=254 Identities=14% Similarity=0.107 Sum_probs=135.0
Q ss_pred HHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHH
Q 017234 56 KTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTS 133 (375)
Q Consensus 56 ~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 133 (375)
...+-.+...|+.|+.+||..+|.. |..|+.+.|- + +.-|.-... .+...|+.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-i----f~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-I----FPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-c----hhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 3677788888888888888888888 7788887777 6 444444443 46677888888888888877665
Q ss_pred HHHCCCCcCHhHHHHHHHHHHcCCChHH---HHHHHHHHHhC---CCCCCChhcH--------------HHHHHHHHcCC
Q 017234 134 MEAQGIKPDSAVFNSLICACLCSGDVVT---ALSLFEIMVSS---EEYKPNSKTY--------------DAFISGFSSLG 193 (375)
Q Consensus 134 m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~---~~~~~~~~~~--------------~~ll~~~~~~~ 193 (375)
.|...||..|..+|...||+.. +.+.+...... .|+..-..-+ ...+......|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 6788888888888888888644 22222222210 1110000000 01111112222
Q ss_pred CHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (375)
.|+.+.+++..+.... ..|..+ .++-+... +....++....+...-.|+..+|..++.+-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2333333332222110 001111 12222211 1122222222221111366666666666666666666666666
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCC
Q 017234 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336 (375)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (375)
.+|.+.|++.+..-|..|+-+ .++...++.++..|.+.|+.|+..| +.-.+..+.+.|+
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT--~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET--QADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch--hHHHHHhhhcchh
Confidence 666666666666555555544 5556666666666666666666666 5555555555443
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.5e-10 Score=94.38 Aligned_cols=231 Identities=10% Similarity=0.012 Sum_probs=195.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
-+.+.+.|.+.|.+.+|.+-|+.-.+. .|-+.||..|-++|.+..+++.|+.++.+-.+ .++-|+....-+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 367888999999999999999988877 67888999999999999999999999999887 23444444456778888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
..++.++|.++++...+.... ++.....+..+|...++++-|++.|+++...|+ -+...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 999999999999999887643 788888888999999999999999999999995 567889999989999999999999
Q ss_pred HHHHHHhCCCCcC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 271 FLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 271 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
-|.+.+..--.|+ ..+|..+-......||+..|.+.|+-....+..... .+|.|.-.-.+.|++++|..+++...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e---alnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE---ALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH---HHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999877644454 346778888888999999999999988876543322 28888888899999999999999877
Q ss_pred hC
Q 017234 349 KQ 350 (375)
Q Consensus 349 ~~ 350 (375)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 54
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.4e-09 Score=99.36 Aligned_cols=241 Identities=14% Similarity=0.141 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHC-----CC-CcCHh-HHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCC
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----GI-KPDSA-VFNSLICACLCSGDVVTALSLFEIMVSS-----EEY 175 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~ 175 (375)
..+...+...|...|+++.|+.++.+..+. |. .|... ..+.+...|...+++++|..+|+++... ...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666899999999999999999887653 21 23333 3344777888999999999999998762 111
Q ss_pred CC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCC-cC-HHhHHHHHHHHHccCChHHHHHHHHHHHHC---C
Q 017234 176 KP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFS-VN-VQTYESLIHGSLKARDFDSVDRFYEEMMSL---G 244 (375)
Q Consensus 176 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~ 244 (375)
.| -..+++.|..+|.+.|++++|...+++..+. |.. |. ...++.+...++..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2356778888899999999988887765431 211 22 234667778889999999999998776542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--Cc-CHHHHHHHHHHHHHcCChHHHHHHHHH----
Q 017234 245 IIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GW--KI-NENMAQKLVKCYCELGRVDELEEQLET---- 309 (375)
Q Consensus 245 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~---- 309 (375)
..+ -..+++.|...|...|++++|.++++.++.. +. .+ ....++.+...|.+.+.+.+|.++|.+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2367999999999999999999999988542 12 22 245688899999999999999999987
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
++..|......+.+|..|...|.+.|+++.|+++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445565554555569999999999999999999998776
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=3.3e-10 Score=105.78 Aligned_cols=247 Identities=14% Similarity=0.112 Sum_probs=175.0
Q ss_pred CCCCcccccchHHHHHHhhcCCcchHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCH
Q 017234 30 TNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCL 108 (375)
Q Consensus 30 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~ 108 (375)
..++.|+..||..+|..||..|+.++..+|.-|.-....-+...|+.++.+ -..++.+. ...|.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~En--------------pkep~a 83 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAEN--------------PKEPLA 83 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccC--------------CCCCch
Confidence 468899999999999999999999887799999777777778888888877 55555333 236788
Q ss_pred HHHHHHHHHHhccCChhH---HHHHHHHH----HHCCCCcCHhH--------------HHHHHHHHHcCCChHHHHHHHH
Q 017234 109 DEYACLIALSGKVQNVPF---AMHVFTSM----EAQGIKPDSAV--------------FNSLICACLCSGDVVTALSLFE 167 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~~--------------~~~li~~~~~~g~~~~a~~~~~ 167 (375)
.+|..|..+|..+||+.. +++.+..+ ...|+..-..- -.+.+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999765 22212211 12232211111 1223333444566667777666
Q ss_pred HHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 017234 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247 (375)
Q Consensus 168 ~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 247 (375)
.+....-..| +..+++-+.... ....++........-.|++.+|.+++.+-..+|+.+.|..++.+|++.|.+.
T Consensus 164 ~~Pvsa~~~p----~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWNAP----FQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCcccccch----HHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 6554211112 222344433332 2333444433332225899999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 017234 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (375)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (375)
+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88777777655 89999999999999999999999999998888877665
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=2e-08 Score=86.23 Aligned_cols=268 Identities=10% Similarity=0.048 Sum_probs=208.3
Q ss_pred ccchHHHH--HHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 017234 37 VSSSNPLI--SRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112 (375)
Q Consensus 37 ~~~~~~ll--~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~ 112 (375)
.++.+.++ .+.-+.++. ++-..+.+..+.-..++...+-+.... +.+|+.+.|..- +++.....+.++.+..
T Consensus 116 ~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~----v~~ll~~~pr~~~vlr 191 (400)
T COG3071 116 QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN----VDQLLEMTPRHPEVLR 191 (400)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH----HHHHHHhCcCChHHHH
Confidence 33444454 344444544 566777777665455666556555555 699999999999 6788778888899999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCH-------hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDS-------AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
....+|.+.|++....+++..+.+.|+-.+. .+|+.+++-....+..+.-...|++..+ ..+.++..-.++
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~ 269 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHH
Confidence 9999999999999999999999999876554 4688888877777777777788888876 345566667788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
+.-+.+.|+.++|.++.++-.+.+.+|+ -...-.+.+-++.+.-++..++-.+.. +-+...+.+|-..|.+.+.|
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHH
Confidence 8899999999999999999999887766 222334567788887777776665542 33447788999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
.+|...++...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|
T Consensus 345 ~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 345 GKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 9999999987764 6999999999999999999999999998876433333
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.22 E-value=4.3e-08 Score=92.28 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=167.9
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (375)
+|.+++.+..+.... ....|-+|-.. -.+|+.+++... +-.....++.|...|..+.....+.|++.+|.-.|.
T Consensus 157 eA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~----~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNF----WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred HHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHH----HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 667777777442222 33446666666 367777777776 333333444566777777777777777777777777
Q ss_pred HHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-----hcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-----KTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
+..+.. +++...+-.-+..|-+.|+...|..-|.++.+.. +|.. ..-...+..+...++.+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777664 4455555556667777788888877777777621 1211 1222345556666666777777766555
Q ss_pred C-CCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHH
Q 017234 208 A-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---------------------------IIPSIPILEKVLEGL 259 (375)
Q Consensus 208 ~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~li~~~ 259 (375)
. +-..+...+++++..+.+...++.|......+.... ..++... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 2 122355567777778888888888777776665511 1112111 1122233
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCH
Q 017234 260 CARRKLDRVKSFLKFLLGGGW--KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (375)
.+....+....+...+.+..+ .-+...|.-+..+|...|++++|..+|..+......-+... |-.+..+|...|.+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v--w~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV--WYKLARCYMELGEY 465 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh--hHHHHHHHHHHhhH
Confidence 344444444444444444442 23445566667777777777777777777665443333222 66677777777777
Q ss_pred HHHHHHHHHHHh
Q 017234 338 DDVEYSVGRMGK 349 (375)
Q Consensus 338 ~~A~~~~~~m~~ 349 (375)
++|.+.|+....
T Consensus 466 e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 466 EEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHHh
Confidence 777777776664
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.8e-09 Score=89.11 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=186.9
Q ss_pred HHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhH-HHHHHHHHH
Q 017234 77 LITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV-FNSLICACL 154 (375)
Q Consensus 77 li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~ 154 (375)
+-++ ++.|-+.+|.+.++..+. ..|-+.||..|-+.|.+-.++..|+.++.+-.+. -|-..| ..-+.+.+-
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~-----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLT-----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhh-----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 4455 699999999999632222 2356678888999999999999999999988776 454444 456777888
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHH
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 234 (375)
..++.++|.++|+...+.. +.++....++...|.-.++++.|+..+.++.+.|+. ++..|+.+.-+|...++++-++
T Consensus 302 am~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999998732 456677778888899999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 235 RFYEEMMSLGIIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 235 ~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.-|.+....--.|+. ..|-.+-......|++..|.+.|+..+..+ ..+...++.|.-.-.+.|+++.|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999888765433443 467778888889999999999999998775 45678899999888999999999999998876
Q ss_pred C
Q 017234 313 C 313 (375)
Q Consensus 313 ~ 313 (375)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 3
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.2e-08 Score=86.33 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=150.4
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHH
Q 017234 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
..+|++++|.+.|++... ..-.-....|| +.-.+-..|++++|++.|-++...-. .+..+...+.+.|-...+...|
T Consensus 501 f~ngd~dka~~~ykeal~-ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN-NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eecCcHHHHHHHHHHHHc-CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHH
Confidence 456888899988888876 21111112222 22345677888999988877654422 3677777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.+++-..... ++.|+...+.|...|-+.|+-.+|.+.+-+--. -++.+..+...|...|....-++++...|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 8887555432 345678889999999999999999888765543 2667888999999999999999999999998765
Q ss_pred CCCCchHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHhCCCCccCchhHHHHHHHHHHhh
Q 017234 314 NQSPEVLLHFFSGIIRLY-ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESWFIWKVG 371 (375)
Q Consensus 314 ~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 371 (375)
+.|+... |..+|..| .+.|+++.|++++++...+ .|.++.-+.++..++|
T Consensus 655 -iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~~hrk-----fpedldclkflvri~~ 705 (840)
T KOG2003|consen 655 -IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKDIHRK-----FPEDLDCLKFLVRIAG 705 (840)
T ss_pred -cCccHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh-----CccchHHHHHHHHHhc
Confidence 6687777 88777655 5679999999999998765 5666666777666655
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=7.3e-08 Score=91.44 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=157.1
Q ss_pred CcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHHC---CCCcCH--
Q 017234 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDS-- 143 (375)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~-- 143 (375)
|...|-.+-..+..+++..++..+..+.+.+...+. +.+...|.+.......|+++.|...|...+.. ...++.
T Consensus 413 d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 444555555557888888889998887776665554 67888999999999999999999999888755 122333
Q ss_pred ----hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 017234 144 ----AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218 (375)
Q Consensus 144 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 218 (375)
.+--.+..++-..++.+.|.+.|..+... -|+- ..|-.++......+...+|...+++..+..- .++..++
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHH
Confidence 23334555556667788888888887762 2433 2333333333344556666666666655432 2444555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCcCHH
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCA------------RRKLDRVKSFLKFLLGGGWKINEN 285 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~ 285 (375)
.+...+....++..|.+-|+..... ...+|..+.-.|.+.|.. .+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 5555555555555555544444332 112444444444443321 123445555555555443 33444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
.-|-+.-.++..|++..|..+|...++... .++ + |-.+.++|...|+|..|+++|+...++-.
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v--~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFED--V--WLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--e--eeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555556666666666665555433 111 1 44555566666666666666655544433
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=2.2e-07 Score=87.64 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=208.2
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
|...|..+-.. .+.|.+++|.-. +.+..+..+++...+---+..|-+.|+...|..-|.++.....+.|..-+..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~c----y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYC----YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHH----HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 56778877777 688999999998 6777778888888888888999999999999999999998753333333333
Q ss_pred ----HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc------------
Q 017234 149 ----LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV------------ 212 (375)
Q Consensus 149 ----li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------------ 212 (375)
++..+...++-+.|.+.++......+-..+...++.++..+.+...++.|.....++.....++
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 4555667788899999998887744455677788999999999999999999888887632222
Q ss_pred ---------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 213 ---------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 213 ---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
+..++ -++-++.+.+..+....+.....+..+ .-+...|.-+..++...|++..|..++..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22231 223344455555555556666666653 334578999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 276 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
......-+..+|-.+.++|...|.++.|.+.++...... |+..-. --.|-..+-+.|+.++|.+++..+.
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~-Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDA-RITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhh-hhhHHHHHHhcCCHHHHHHHHhccc
Confidence 887555678899999999999999999999999998854 433322 3457777899999999999999876
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.6e-07 Score=82.06 Aligned_cols=218 Identities=12% Similarity=-0.012 Sum_probs=148.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
..+..+.++.. +.++..... .....|..+...+.+.|+.+.|...|++..+.. +.+...|+.+...+...|
T Consensus 38 ~~~~~e~~i~~----~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 38 PTLQQEVILAR----LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred CchHHHHHHHH----HHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC
Confidence 33455666666 444443332 224567888888899999999999999988874 336788999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHH
Q 017234 158 DVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
++++|...|+...+ +.| +..++..+..++...|++++|.+.|++..+..+. +. ........+...+++++|...
T Consensus 113 ~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 113 NFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHH
Confidence 99999999999987 245 4567778888888899999999999998886533 22 222222334456789999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---cCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG---GWK---INENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
|++..... .|+...+ .+ .....|+...+ ..+..+.+. ... .....|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97655432 3332222 22 22335555444 344444422 111 12357888888999999999999999998
Q ss_pred HhCC
Q 017234 311 TKCN 314 (375)
Q Consensus 311 ~~~~ 314 (375)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 8754
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=4.6e-07 Score=83.96 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=186.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHH-HHHHHHHHcC---
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF-NSLICACLCS--- 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~--- 156 (375)
...|++++|++. +..-....+.....+......+.+.|+.++|..++..+.+.+ |+-..| ..+..+..-.
T Consensus 15 ~e~g~~~~AL~~----L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 15 EEAGDYEEALEH----LEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHCCCHHHHHHH----HHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 478999999999 554433334557777888999999999999999999999985 555554 4555554222
Q ss_pred --CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHH
Q 017234 157 --GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 157 --g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
.+.+...++|+++... -|.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 3578889999999873 36655555554344433333 3455666777888865 4477777777766666666
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHH
Q 017234 234 DRFYEEMMSL----G----------IIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCE 296 (375)
Q Consensus 234 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 296 (375)
.+++...... + -.|+. .++..+.+.|-..|++++|..++++.++.. |+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 6666665432 1 12343 456677788889999999999999999863 54 6788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
.|++++|.+.++..++.+..- ... -+-.+..+.+.|++++|.+++......+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~D-Ryi--NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLAD-RYI--NSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhh-HHH--HHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999866432 333 56778888999999999999999988776
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=1.2e-07 Score=82.72 Aligned_cols=220 Identities=11% Similarity=0.004 Sum_probs=158.1
Q ss_pred cCChhHHHHHHHHHHHCC-CCcC--HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHH
Q 017234 121 VQNVPFAMHVFTSMEAQG-IKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 197 (375)
.++.+.++.-+.++.... ..|+ ...|..+...+.+.|+.++|...|++..+. -+.+...|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 346677777777777542 1222 456888888999999999999999999872 24457889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
|.+.|++..+..+. +..+|..+..++...|++++|.+.|+...+.+ |+..........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999987644 67788889999999999999999999998864 4432222222234467889999999977654
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-----QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 278 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
.. .|+...+ . ......|+.+.+ +.++.+.+.. ..|. ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 3332222 2 233346666554 3555554321 1111 12238889999999999999999999999765
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=9.2e-08 Score=87.59 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=178.4
Q ss_pred HhhhccCCCCcc--cHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC---CCHHH-HHHHHHHHhccCChhHHHHHHHH
Q 017234 61 SVDIFAFNSSQF--SWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE---SCLDE-YACLIALSGKVQNVPFAMHVFTS 133 (375)
Q Consensus 61 ~m~~~~~~p~~~--~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~-~~~li~~~~~~~~~~~a~~~~~~ 133 (375)
.+...|..+... +...+... ..+|++++|..++.+.++....... |...+ .+.+...|...+++.+|..+|++
T Consensus 187 ~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 187 QAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred HHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444444332 33334444 5999999999999988887544433 33222 33466788999999999999998
Q ss_pred HHHC-----CC-Cc-CHhHHHHHHHHHHcCCChHHHHHHHHHHHhC----CC-CCCChh-cHHHHHHHHHcCCCHHHHHH
Q 017234 134 MEAQ-----GI-KP-DSAVFNSLICACLCSGDVVTALSLFEIMVSS----EE-YKPNSK-TYDAFISGFSSLGNVDAMNK 200 (375)
Q Consensus 134 m~~~-----g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~ 200 (375)
+... |- .| -..+++.|-.+|.+.|++++|...++...+- .+ ..|.+. .++.+...++..+++++|..
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 8742 21 12 2457888888999999999888877766541 11 122222 35667778899999999999
Q ss_pred HHHHHHHC---CCCc----CHHhHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHH
Q 017234 201 WYAANIAA---GFSV----NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-----G-IIP-SIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 201 ~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~ 266 (375)
++....+. -+.+ -..+++.|...|...|++++|.++|++.... | ..+ ....++.+...|.+.++.+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 98865432 1222 2468999999999999999999999988643 1 122 2456888889999999999
Q ss_pred HHHHHHHHHHh----CCC-CcC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 267 RVKSFLKFLLG----GGW-KIN-ENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 267 ~a~~~~~~~~~----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
.|.++|.+... .|. .|+ ..+|..|...|.+.|++++|.++.+.+.
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99988887532 221 233 4679999999999999999999988865
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=2.2e-07 Score=74.38 Aligned_cols=188 Identities=15% Similarity=0.083 Sum_probs=94.7
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
+..|+...|.+- +++..+..+.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|+....+|..|+++
T Consensus 46 L~~gd~~~A~~n----lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 46 LQQGDYAQAKKN----LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHCCCHHHHHHH----HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChH
Confidence 355555555555 344444445555555555555555555555555555555442 123445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+|...|++........--..||..+.-+..+.|+.+.|.+.|++-.+.... ...+.-.+.....+.|++-.|...++..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555555542222222344555555555555555555555555554332 3344444555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
...+. ++..+.-..|..--..|+.+.+.+.=.++
T Consensus 200 ~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 200 QQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred Hhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54442 44444444444444555555554444443
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=6.4e-07 Score=83.02 Aligned_cols=290 Identities=11% Similarity=0.079 Sum_probs=201.1
Q ss_pred HhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc-
Q 017234 46 RLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV- 121 (375)
Q Consensus 46 ~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~- 121 (375)
.+...|.. +|.+.+..- .+.-+|..+|.-.-.. .+.|+.++|... +..+...++.|..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~----y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKN--EKQILDKLAVLEKRAELLLKLGRKEEAEKI----YRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHCCCHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 34555655 666666553 3355666666554444 599999999999 6788888888888888888777333
Q ss_pred ----CChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH-HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHH
Q 017234 122 ----QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196 (375)
Q Consensus 122 ----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 196 (375)
.+.+...++++++.+. -|.......+.-.+.....+. .+..++..+.. .|+++ +|+.|-..|....+.+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHHHHHHcChhHHH
Confidence 2567788888888765 244444433333333322333 34556666666 56554 5666666677666666
Q ss_pred HHHHHHHHHHHC----C----------CCcCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 017234 197 AMNKWYAANIAA----G----------FSVNV--QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGL 259 (375)
Q Consensus 197 ~a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~ 259 (375)
-..+++...... + -+|+. .++.-+...|...|++++|++.+++..++ .|+ +..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666665432 1 12333 34566677888999999999999999987 466 57788888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHH------HHHHHHHHHHh
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH------FFSGIIRLYAL 333 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~~li~~~~~ 333 (375)
-+.|++++|.+.++...+.. .-|-.+-+-.+..+.+.|++++|.+++......+..|..... .......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 346777777888899999999999999998776654433221 12456788899
Q ss_pred hCCHHHHHHHHHHHHhC
Q 017234 334 SDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 334 ~g~~~~A~~~~~~m~~~ 350 (375)
.|++..|++-|....+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999998888777653
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.2e-06 Score=78.90 Aligned_cols=263 Identities=11% Similarity=-0.011 Sum_probs=164.4
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH---HHHHHhccCChhHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHcC
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC---LIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCS 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 156 (375)
...|++++|.+.+ ++.....+.|...+.. ........+....+.+.+.. .....|+ ......+...+...
T Consensus 54 ~~~g~~~~A~~~~----~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 54 WIAGDLPKALALL----EQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHcCCHHHHHHHH----HHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 5899999999994 4544445555555552 22222234555666666654 1122333 34555666788899
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCH--HhHHHHHHHHHccCChHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNV--QTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~--~~~~~ll~~~~~~g~~~~a 233 (375)
|++++|...+++..+. .+.+...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++|
T Consensus 128 G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 128 GQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred CCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999972 2445667788889999999999999999998775432 232 3456788899999999999
Q ss_pred HHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--CcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 234 DRFYEEMMSLGI-IPSIPIL-E--KVLEGLCARRKLDRVKSF--LKFLLGGGW--KINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 234 ~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
..++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999864432 1222211 1 233333444544333333 211111111 1112222356778889999999999
Q ss_pred HHHHHHhCCCC----Cc--hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 306 QLETLTKCNQS----PE--VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 306 ~~~~~~~~~~~----~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
+++.+...... .. .....--...-++...|++++|.+.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99988663222 00 111112222334568899999999998887653
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=1e-06 Score=70.60 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=152.5
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
+..-|.-.|.+.|+...|..-+++..+.+ +-+..+|..+...|-+.|+.+.|.+-|++.... -+-+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 45567778888888888888888888874 335668888888888888888888888888762 134556777888888
Q ss_pred HcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (375)
|..|++++|...|++....- ...-..+|..+.-+..+.|+++.|...|++-.+.. +-...+.-.+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888877641 11235678888888888888888888888888765 23346677788888888888888
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
..+++.....+. ++....-..|+.-.+.|+-+.+.+.=..+...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888877764 78888888888888888888877776666653
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.1e-06 Score=81.93 Aligned_cols=255 Identities=11% Similarity=0.026 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCC--cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcH
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (375)
..|+.+.+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|.+..+ ..|+..++
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l 343 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVL 343 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCccc
Confidence 344445555555555555555555555444433111 1122344455555555555555555544443 12332222
Q ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHCCCC-------------------------------------cCHHhHHHHHHH
Q 017234 183 --DAFISGFSSLGNVDAMNKWYAANIAAGFS-------------------------------------VNVQTYESLIHG 223 (375)
Q Consensus 183 --~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------------------------------------~~~~~~~~ll~~ 223 (375)
--|...|.+.|+.+.+...|+...+..+. .|...|-.+...
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 23344444555555544444444443211 134444444443
Q ss_pred HHccCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------cCHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEE----MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG---GWK------INENMAQKL 290 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~------~~~~~~~~l 290 (375)
+-.. +...++.+|.. +...+..+.....|.+.......|+++.|...|...... ... ++..+-..+
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 3332 22222444332 233444455566666666666777777777777666443 111 222233335
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHHHHHH
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESWFIW 368 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 368 (375)
.+.+-..++.+.|.+++..+.+.. |.-... |--+...-...+...+|...+++.....-. .|+..+++..+.+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~-ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~--np~arsl~G~~~l 575 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDA-YLRLGCMARDKNNLYEASLLLKDALNIDSS--NPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHH-HHHhhHHHHhccCcHHHHHHHHHHHhcccC--CcHHHHHHHHHHH
Confidence 555666667777777777666643 322221 333332223335666777777777654332 6666666653333
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.98 E-value=1.1e-05 Score=73.94 Aligned_cols=283 Identities=10% Similarity=0.047 Sum_probs=193.2
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVF 131 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (375)
.+..+++..+ ..+..+...|.+-... -.+|+.+...+++.+-+..+...|. -+...|-.=...|-..|..-.+..+.
T Consensus 424 nAkkvLNkaR-e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 424 NAKKVLNKAR-EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHHH-hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 4566666664 3466677778655555 5889999999998877778877776 67788888888888888888888888
Q ss_pred HHHHHCCCCcC--HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 132 TSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 132 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
......|+.-. ..||+.-...|.+.+.++-|..+|....+. ++-+...|......=-..|..+....+|++....-
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88887776532 457888888888888888888888887762 34445556666555556677777777777776654
Q ss_pred CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 017234 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289 (375)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (375)
+ .....|-....-+-..|+...|..++....+.. +-+...|-.-+..-....+++.|..+|.+.... .|+..+|.-
T Consensus 581 p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 581 P-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred C-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 3 356666666667777777777777777776654 224566666666677777777777777776553 456666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
-+..--..++.++|.+++++..+. -|+..-. |-.+.+.+-+.++++.|.+.|..
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKS--FPDFHKL-WLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHH-HHHHhHHHHHHHHHHHHHHHHHh
Confidence 566556667777777777666552 2332221 55666666666666666666544
No 66
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.97 E-value=5.5e-06 Score=75.97 Aligned_cols=257 Identities=9% Similarity=0.062 Sum_probs=160.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
...|+...|..+ +.+..+..+.+...|-..++.-....+++.|..+|.+.... .|+..+|..-+..-.-.+..+
T Consensus 595 w~agdv~~ar~i----l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 595 WKAGDVPAARVI----LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HhcCCcHHHHHH----HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 456666666666 34444444556666666666666666777777776666553 456666655555555566666
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+|.+++++..+. ++--...|-.+...+-+.++.+.|.+.|..-.+. ++-.+..|-.|...=-+.|.+-.|..+++.-
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 677666666652 2222234445555556666666666665543332 2234556666666666677788888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------------------------CCcCHHHHHHHH
Q 017234 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----------------------------WKINENMAQKLV 291 (375)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~li 291 (375)
...+ +-+...|-..|..-.+.|+.+.|..++.+.++.- +.-|+.+...+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 7765 4566778888888888888888888777765431 122444444555
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+-...++++|.+.|.+..+.+.... .+ |.-+...+..+|.-++-.++++.....
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~G-D~--wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNG-DA--WAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccc-hH--HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 566666677777777777776553332 22 666777777777777777777666543
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.3e-07 Score=79.20 Aligned_cols=223 Identities=9% Similarity=0.005 Sum_probs=168.8
Q ss_pred HhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHH
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 197 (375)
+.-.|+.-.|..-|+...+....++ ..|--+..+|....+.++..+.|++..+.. +.++.+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 3456888889999988887753322 237777788899999999999999998732 4456677777777777889999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
|..=|++.....+. +...|--+-.+.-+.+++++++..|++.+++- +-.+..|+.....+...+++++|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998887654 67777777777788889999999999998873 33467888889999999999999999998876
Q ss_pred CC-----C--CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 278 GG-----W--KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 278 ~~-----~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.. + .+.+.+.-.++..-- .+++..|..++.+..+.+ |..... |..|...-.+.|++++|+++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A-~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQA-YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 1 122233333333322 388999999999998855 433333 88899999999999999999987653
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.6e-06 Score=78.08 Aligned_cols=260 Identities=10% Similarity=0.079 Sum_probs=186.2
Q ss_pred hHHHHHHHhh-hccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017234 54 QIKTTLDSVD-IFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131 (375)
Q Consensus 54 ~~~~~~~~m~-~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (375)
+..++.+... ..++.++. +..-|.+ ...|+..+-..+ --++.+..+..+.+|-++...|.-.|+.++|.+.|
T Consensus 262 ~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~l----sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 262 ECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLL----SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHH----HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4466666653 33444443 3334445 677777666666 45666666677888888888888889999999999
Q ss_pred HHHHHCCCCcC-HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 017234 132 TSMEAQGIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210 (375)
Q Consensus 132 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 210 (375)
.+....+ |+ ...|-.....|+-.|..|+|+.-|...-+. ++-...-+--+.--|.+.+..+.|.+.|.+....-+
T Consensus 336 SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 336 SKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 8776542 32 457888888888889999998888877651 122222233344567788889999999988877654
Q ss_pred CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 017234 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL----G--IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284 (375)
Q Consensus 211 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 284 (375)
. |+...+-+.-..-..+.+.+|..+|+..+.. + ..-...+++.|..+|.+.+.+++|...+++.+... +-|.
T Consensus 412 ~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~ 489 (611)
T KOG1173|consen 412 S-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDA 489 (611)
T ss_pred C-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCch
Confidence 3 7888888877777788899999888877621 1 11245678888889999999999999999888764 5578
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
.++.++.-.|...|+++.|...|.+... +.|+..+ -..++.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~--~~~lL~ 530 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIF--ISELLK 530 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHH--HHHHHH
Confidence 8889988899999999999999988766 5676554 344444
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.8e-06 Score=71.04 Aligned_cols=305 Identities=14% Similarity=0.029 Sum_probs=199.9
Q ss_pred CCCcccccchHHHHHHhhcCC---cchHHHHHHHhhhccC-CCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC
Q 017234 31 NTNSTSVSSSNPLISRLLQVP---VSQIKTTLDSVDIFAF-NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE 105 (375)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~---~~~~~~~~~~m~~~~~-~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~ 105 (375)
..+.|..++...=+.++++.. ...+-.++........ +-|+.....+... +..|+.++|...| ++....++
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F----e~~~~~dp 263 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF----SSTLCANP 263 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH----HHHhhCCh
Confidence 344555555555555554443 2244444444433333 3345555556666 6888888888884 44443343
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
-+......-...+.+.|+.+....+...+.... +-+...|-.-........+++.|+.+-++..+.. +.+...|-.-
T Consensus 264 y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilK 340 (564)
T KOG1174|consen 264 DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILK 340 (564)
T ss_pred hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhc
Confidence 333333333444556777777777776665442 2344555555666677788888888888887621 3344455555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcC
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL-EGLC-ARR 263 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g 263 (375)
...+...+++++|.-.|.......+ -+...|.-|+.+|...|.+.+|.-.-++..+. +..+..+.+.+. ..|. ...
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 6677888999999999988877643 37889999999999999999988766555432 123344444331 2222 334
Q ss_pred CHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHH
Q 017234 264 KLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (375)
.-++|..+++..+.. .|+ ....+.+...+...|..+++..+++.-.. ..|+... .+.|.+.+...+.+++|.+
T Consensus 419 ~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~L--H~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNL--HNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred hHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHH--HHHHHHHHHHhhhHHHHHH
Confidence 458888888877654 344 44567778889999999999999998876 4566666 7899999999999999999
Q ss_pred HHHHHHhC
Q 017234 343 SVGRMGKQ 350 (375)
Q Consensus 343 ~~~~m~~~ 350 (375)
.|......
T Consensus 493 ~y~~ALr~ 500 (564)
T KOG1174|consen 493 YYYKALRQ 500 (564)
T ss_pred HHHHHHhc
Confidence 99877654
No 70
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=4e-07 Score=79.70 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=137.9
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHH
Q 017234 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164 (375)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 164 (375)
++..|.+. -+.......-+......--+.....|+++.|...+.+....+-.-....|| +.-.+-..|++++|++
T Consensus 471 ~~~~aqqy----ad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald 545 (840)
T KOG2003|consen 471 DFADAQQY----ADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALD 545 (840)
T ss_pred chhHHHHH----HHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHH
Confidence 34444444 333333333344444333444455677777777777776553222222232 2334456677777777
Q ss_pred HHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 017234 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 244 (375)
.|-++.. -+..+..+...+.+.|-...+...|.+++-+.... ++.|+....-|...|-+.|+-..|.+.+-+--+-
T Consensus 546 ~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry- 621 (840)
T KOG2003|consen 546 CFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY- 621 (840)
T ss_pred HHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-
Confidence 7766654 23445566666777777777777777777665544 3346677777777777777777777665544332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhCCCCCchHHHH
Q 017234 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK-CYCELGRVDELEEQLETLTKCNQSPEVLLHF 323 (375)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (375)
.+-+..|...|...|....=++++..+|+...- +.|+..-|..++. ++.+.|++.+|..+++....+ +.-+...
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldc-- 696 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDC-- 696 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHH--
Confidence 244566666666666666667777777766543 4577777766663 345567777777777766543 2223333
Q ss_pred HHHHHHHHHhhCC
Q 017234 324 FSGIIRLYALSDR 336 (375)
Q Consensus 324 ~~~li~~~~~~g~ 336 (375)
..-|++.+...|-
T Consensus 697 lkflvri~~dlgl 709 (840)
T KOG2003|consen 697 LKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhccccc
Confidence 4445555555553
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1.5e-05 Score=71.74 Aligned_cols=263 Identities=9% Similarity=-0.052 Sum_probs=162.6
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHH----cC
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL----CS 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~ 156 (375)
...++++.+...+.......... .............+...|++++|.+.+++..+.. +.+...+.. ...+. ..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~ 93 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQALAAR-ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFS 93 (355)
T ss_pred HhcCCcchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccc
Confidence 35677777766643322222211 1112223333455678899999999999988763 334444442 22222 34
Q ss_pred CChHHHHHHHHHHHhCCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 235 (375)
+..+.+.+.+... ....|+. .....+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|..
T Consensus 94 ~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 94 GMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred cCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHH
Confidence 5555666655542 2223433 34445667888999999999999999997644 67788899999999999999999
Q ss_pred HHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHH-H--HHHHHHHHcCChHHHHHH--
Q 017234 236 FYEEMMSLGI-IPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KINENMA-Q--KLVKCYCELGRVDELEEQ-- 306 (375)
Q Consensus 236 ~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~-- 306 (375)
.+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+.
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~ 249 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWED 249 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHH
Confidence 9999887532 2332 3455678889999999999999999864432 1222211 1 334444445544433333
Q ss_pred -HHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 307 -LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 307 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
..........+ ...........++...|+.++|..+++.+....
T Consensus 250 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 250 LADYAAWHFPDH-GLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHhhcCcc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22211111111 111112356777889999999999999987643
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=5.8e-07 Score=79.38 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=174.5
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
+..|++..+.+. ++......+.+...|--+...|....+.++..+.|+...+.+ +-++.+|..-.....-.++++
T Consensus 337 fL~g~~~~a~~d----~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 337 FLKGDSLGAQED----FDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhcCCchhhhhh----HHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 378899999999 566666666444447778889999999999999999998876 337778888888888889999
Q ss_pred HHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 239 (375)
+|..=|++.+. +.| +...|-.+..+..+.+.+++++..|++.++.- +..+.+|+.....+...++++.|.+.|+.
T Consensus 412 ~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 412 EAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999999987 234 45677778888889999999999999998874 44788999999999999999999999999
Q ss_pred HHHCCCC-----CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 240 MMSLGII-----PSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 240 m~~~~~~-----p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..+.... .+. ..--.++ .+.-.+++..|..++....+.. +-....|..|...-.+.|++++|.++|++-..
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8764211 111 1111111 1223489999999999998865 33556799999999999999999999998654
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2.7e-07 Score=79.68 Aligned_cols=247 Identities=12% Similarity=0.089 Sum_probs=147.2
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
+-.|++..++.- .+ ...... .+......+.+++...|+++.++ .++.+.. .|.......+...+...++-
T Consensus 12 fy~G~Y~~~i~e----~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 12 FYLGNYQQCINE----AS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HCTT-HHHHCHH----HH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHhhhHHHHHHH----hh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 567777777755 23 222222 34455556777777888766543 3443333 55655554444444333455
Q ss_pred HHHHHHHHHHHhCCCCCCChhcHH-HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNSKTYD-AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 238 (375)
+.++.-+++... ....++..++. .....+...|++++|+++++.- .+.......+..|.+.++++.|.+.++
T Consensus 83 e~~l~~l~~~~~-~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 83 ESALEELKELLA-DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HCHHHHHHHCCC-TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556555555443 22222222332 3334566778888888877542 356667777888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 239 EMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
.|.+.+ +..+...+..++.. ...+++|..+|+++.+. +.+++.+.+.+..+....|++++|++++.+..+.+
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 888642 33445555555442 23688888888887664 56788888888888888888998888888876544
Q ss_pred CCCchHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhC
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRL-DDVEYSVGRMGKQ 350 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 350 (375)
|..... ...++.+....|+. +.+.+++.+++..
T Consensus 232 --~~~~d~-LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 --PNDPDT-LANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CCHHHH-HHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred --cCCHHH-HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 333322 44456666666666 6677888887754
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.5e-06 Score=73.18 Aligned_cols=268 Identities=12% Similarity=0.082 Sum_probs=148.7
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHH
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 161 (375)
..+++.+..++ .+......++....+..=|..+...|+..+-.-+=.++.+.- +-.+.+|-++..-|.-.|+.++
T Consensus 256 ~~c~f~~c~ki----t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 256 YGCRFKECLKI----TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HcChHHHHHHH----hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHH
Confidence 44445555555 334444444444444444445555555444443334444331 2234455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 162 ALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 162 a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
|.+.|.+... +.|+ ...|-.+...|.-.|..+.|...+...-+.=..... -+--+.--|.+.++.+-|.+.|...
T Consensus 331 ARry~SKat~---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 331 ARRYFSKATT---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHhh---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555555443 1222 124445555555555555555555444332110000 0111223355566677777776665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG----G--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
.... +.|+...+.+.-.....+.+.+|..+|+..++. + ...-..+++.|..+|.+.+.+++|...+++.....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5432 345566666666666778888888888876521 1 11244567888888889999999998888877643
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHH
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 364 (375)
.+ +..+ +.++.-.|...|+++.|++.|.+.. .+.|+.....+.++
T Consensus 486 ~k-~~~~--~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PK-DAST--HASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred CC-chhH--HHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 22 2333 7788888888899999999888876 45565554444444
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3e-09 Score=59.25 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=15.9
Q ss_pred CCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 76
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=3.8e-06 Score=82.95 Aligned_cols=237 Identities=8% Similarity=0.081 Sum_probs=159.2
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC-CCCc---CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 017234 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKP---DSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173 (375)
Q Consensus 98 ~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 173 (375)
++.....+.+...|-.-|....+.++++.|.++.++.+.. ++.- -...|.++++.-...|.-+...++|+++.+ .
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-y 1526 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-Y 1526 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-h
Confidence 3344444555666777777777888888888888777643 1111 123566666666666777777888888876 2
Q ss_pred CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HH
Q 017234 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IP 250 (375)
Q Consensus 174 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 250 (375)
--....|..|+..|.+.+..++|-++++.|.+.-- .....|...+..+.+..+-++|..++.+..+. .|. ..
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~ 1601 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVE 1601 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHH
Confidence 12234577777888888888888888888876522 36677888888888888888888888777664 233 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (375)
.....++.-.+.|+.+.+..+|+..+... +--...|+.++++-.+.|+.+.++.+|++....++.|-..-..|.-.+.-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 34444555567788888888888776653 33456788888888888888888888888888777776555556666665
Q ss_pred HHhhCCHHHHH
Q 017234 331 YALSDRLDDVE 341 (375)
Q Consensus 331 ~~~~g~~~~A~ 341 (375)
=-+.|+-+.+.
T Consensus 1681 Ek~~Gde~~vE 1691 (1710)
T KOG1070|consen 1681 EKSHGDEKNVE 1691 (1710)
T ss_pred HHhcCchhhHH
Confidence 55556644333
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.6e-05 Score=69.04 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
+.++++.+..+++..++-+ +-|..+|......=...|+.+.|..+|.-..+... .+.....|.+.|+-=...|.++.|
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhhhcchHHHH
Confidence 3334444444444444433 22334444444444455555555555555444321 222222355555555666666666
Q ss_pred HHHHHHHHhC
Q 017234 341 EYSVGRMGKQ 350 (375)
Q Consensus 341 ~~~~~~m~~~ 350 (375)
..+++++++.
T Consensus 527 R~LYerlL~r 536 (677)
T KOG1915|consen 527 RALYERLLDR 536 (677)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=5.1e-09 Score=58.31 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=18.1
Q ss_pred CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHH
Q 017234 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169 (375)
Q Consensus 138 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 169 (375)
|+.||..|||.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 79
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=5.2e-06 Score=76.99 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=173.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
-.+...+.+.|-...|..+|++.. .|..+|.+|...|+..+|..+..+..+ -+||...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 456667778888888988888754 466788999999999999999888876 27899999999988888
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (375)
..-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 88889999998765432 12222222334789999999998877764 34567888888888899999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+..+ ... |...+....+.|.+++|++.+.++.+..
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~i--WENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQI--WENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Cee--eechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99987643 3345679999999999999999999999999987444 333 8888889999999999999999998754
Q ss_pred CC
Q 017234 352 LS 353 (375)
Q Consensus 352 ~~ 353 (375)
..
T Consensus 618 ~~ 619 (777)
T KOG1128|consen 618 KK 619 (777)
T ss_pred hh
Confidence 43
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=7.1e-06 Score=69.27 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 289 KLVKCYCELGRVDELEEQLETLTKCNQS-PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.+...+.+.|++++|...++...+.... |.. ...+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPAT-EEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455677778888888888777765332 221 112667777888888888888877777543
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=8.4e-07 Score=76.59 Aligned_cols=223 Identities=9% Similarity=0.005 Sum_probs=142.8
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCH
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (375)
+-+.-.|++..++.-.+ .....-..+.....-+.+++...|+.+.++ .+... .. .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~-~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK-SS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T-TS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc-CC-ChhHHHHHHHHHHHhCccch
Confidence 33445688888876555 222222223455667788899999877544 45544 22 67777776666555544555
Q ss_pred HHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 196 DAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 196 ~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+.+..-+++....... .+....-.....+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544333322 23333344445677789999999887542 4567778889999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHH----HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 275 LLGGGWKINENMAQKLVKCY----CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
|.+.+ .|.. ...+..++ .-.+.+.+|..+|+++.+. ..++..+ .+.+..+....|++++|.+++.+..+.
T Consensus 157 ~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~--lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 157 MQQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKL--LNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHH--HHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 98753 4433 33344433 3344699999999998775 3455555 889999999999999999999998754
Q ss_pred CCCccCch
Q 017234 351 GLSFKSAE 358 (375)
Q Consensus 351 ~~~~~~~~ 358 (375)
.|+.|+
T Consensus 231 --~~~~~d 236 (290)
T PF04733_consen 231 --DPNDPD 236 (290)
T ss_dssp ---CCHHH
T ss_pred --ccCCHH
Confidence 344544
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1.8e-05 Score=78.37 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=184.2
Q ss_pred cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
...|-..+.- +..++.++|.+++++++..+.-... .-...|-++++.-...|.-+...++|++..+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 4556666666 7999999999998877766632222 45678888888888889889999999999876 223557889
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHcc
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKA 227 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 227 (375)
|...|.+.+++++|.++++.|.+. +......|...+..+.+..+-+.|.+++.+..+.-++ -......-.+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 999999999999999999999984 4467788999999999999999999999998775322 1334445555666789
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChHHHHH
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~ 305 (375)
|+.+.+..+|+...... +--...|+..|..-.++|+.+.+..+|+++...++.|-- ..|.-.+..=...|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999998764 234568999999999999999999999999998876642 456666666666677666555
Q ss_pred HHHHH
Q 017234 306 QLETL 310 (375)
Q Consensus 306 ~~~~~ 310 (375)
+=.+.
T Consensus 1693 VKarA 1697 (1710)
T KOG1070|consen 1693 VKARA 1697 (1710)
T ss_pred HHHHH
Confidence 54443
No 83
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=9.5e-05 Score=64.86 Aligned_cols=223 Identities=9% Similarity=0.001 Sum_probs=101.2
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
..+...++.++|+.+.++..+.. +-+..+|+.--.++...| ++++++..++++.+. -+.+..+|+.-...+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33344445555555555555442 112334444333444444 345555555555541 12233344433333333333
Q ss_pred H--HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----
Q 017234 195 V--DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---RKL---- 265 (375)
Q Consensus 195 ~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~---- 265 (375)
. +++.++++++.+...+ |..+|+...-++...|+++++++.++++.+.+ .-+...|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 1 4445555555554433 55555555555555555555555555555544 22334444443333332 111
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC------
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL----GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD------ 335 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------ 335 (375)
+....+...++... +-|...|+-+...+... +...+|...+.+....+ |..... ...|++.|+...
T Consensus 200 e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~a-l~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 200 DSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFA-LSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHH-HHHHHHHHHhhhccchhh
Confidence 23444444444332 23444455554444441 22344555555544422 211111 455555555422
Q ss_pred ------------CHHHHHHHHHHH
Q 017234 336 ------------RLDDVEYSVGRM 347 (375)
Q Consensus 336 ------------~~~~A~~~~~~m 347 (375)
..++|.+++..+
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHH
Confidence 346788888888
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=4e-05 Score=73.99 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=62.7
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 220 (375)
+...+-.|.....+.|..++|..+++...+ +.|+. .....+...+.+.+++++|+...++.....+. +......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 344455555555555555555555555544 23332 23334444455555555555555555554433 44444444
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
..++...|++++|..+|++....+ +-+..++..+..++-..|+.++|...|+...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555422 12234444444555555555555555555444
No 85
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=9.1e-05 Score=64.97 Aligned_cols=228 Identities=8% Similarity=-0.007 Sum_probs=159.6
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh-
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV- 159 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 159 (375)
..+..++|+.+ .++.....+.+..+|+.--..+...| ++++++..++++.+.. +.+..+|+..-..+.+.|+.
T Consensus 49 ~~e~serAL~l----t~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 49 SDERSPRALDL----TADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred cCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 56678888888 56666666667777777766777777 5789999999888775 33666777665556666653
Q ss_pred -HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc---CCh----H
Q 017234 160 -VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---RDF----D 231 (375)
Q Consensus 160 -~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~----~ 231 (375)
++++.+++++.+. -+-+..+|+....++...|+++++++.++++.+.++. |..+|+.....+.+. |.. +
T Consensus 124 ~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 6788888888862 2456788888888888889999999999999988765 777777776665554 222 4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC---------
Q 017234 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCAR----RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG--------- 298 (375)
Q Consensus 232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------- 298 (375)
+......+..... +-|...|+.+...+... +...+|..+..+..+.+ ..+......|++.|+...
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 5666666666654 44567788887777763 34566888887776654 346777888888887632
Q ss_pred ---------ChHHHHHHHHHHHhCCCCCchHH
Q 017234 299 ---------RVDELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 299 ---------~~~~a~~~~~~~~~~~~~~~~~~ 321 (375)
..++|.++++.+.+ ..|-...
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~--~d~ir~~ 308 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEV--ADPMRRN 308 (320)
T ss_pred hhccccccccHHHHHHHHHHHHh--hCcHHHH
Confidence 23567777777743 4453333
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.0001 Score=64.35 Aligned_cols=258 Identities=8% Similarity=-0.021 Sum_probs=176.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH-hHHHHHHHHHHcCCCh
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS-AVFNSLICACLCSGDV 159 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 159 (375)
+..++...+...+- +-+..+.-..|++....+.+.+...|+..+|...|++..-. .|+. .......-.+.+.|+.
T Consensus 207 ~~~~~hs~a~~t~l--~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 207 MFNFKHSDASQTFL--MLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHhcccchhhhHHH--HHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 45555555555532 34444444567888889999999999999999999887754 2322 2222223334577888
Q ss_pred HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 239 (375)
++...+...+... ..-+...|-.-+.......+++.|+.+-++..+.... +...|-.-...+...|++++|.-.|+.
T Consensus 283 e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 283 EQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence 8888888777651 1233444444455556677888888888888776533 555665556778888999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-HHH-HHcCChHHHHHHHHHHHhCCCCC
Q 017234 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV-KCY-CELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 240 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
.+... +-+...|.-|+.+|...|.+.+|.-.-...... +.-+..+.+.+. ..+ ....--++|.++++.-.. +.|
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P 435 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INP 435 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCC
Confidence 87653 345789999999999999999988776665443 234555555442 222 223345788888887766 456
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+-... .+.+...+...|+.++++.++++....
T Consensus 436 ~Y~~A-V~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 436 IYTPA-VNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred ccHHH-HHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 44333 678889999999999999999988754
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=1.5e-05 Score=67.30 Aligned_cols=185 Identities=13% Similarity=0.004 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC---HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh--
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-- 180 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-- 180 (375)
.....+..+...+.+.|+++.|...|+++.+.. +.+ ..++..+..++.+.|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---HPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCch
Confidence 456677777788888888888888888887653 112 246677788888888888888888888763 23222
Q ss_pred --cHHHHHHHHHcC--------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 017234 181 --TYDAFISGFSSL--------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250 (375)
Q Consensus 181 --~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 250 (375)
++..+..++... |+.++|.+.|+.+.+..+. +...+..+..... .... .. .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------G 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------H
Confidence 344444445443 6677888888888776433 2233322221111 0000 00 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
....+...+.+.|++++|...++...+.. -+.....+..+..++...|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11245566888899999999999887652 1223567888889999999999999988887764
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.5e-05 Score=65.13 Aligned_cols=200 Identities=15% Similarity=0.056 Sum_probs=106.0
Q ss_pred CCCcccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCC-CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCC
Q 017234 31 NTNSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC 107 (375)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~ 107 (375)
++......-++.++..+++..+. ++.+.+..... -.| +..-.+.|-.+ +..-++..|.+. ++++.... |.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~C----YeQL~ql~-P~ 76 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAEC----YEQLGQLH-PE 76 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhC-hH
Confidence 34444445678888888877655 44444443322 234 44455555555 677788888888 55554433 33
Q ss_pred HHHHH-HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCChhcHHH
Q 017234 108 LDEYA-CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA--CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (375)
Q Consensus 108 ~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 184 (375)
..-|. .-...+.+.+.+..|+++...|... |+...-..-+.+ ....+++..+..+.++... ..+..+.+.
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in 149 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQIN 149 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhcc
Confidence 32232 2345666788888999888877642 121111111111 1234555555555555542 122333333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 017234 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 245 (375)
......+.|+++.|.+-|+...+-+--.....||.-+.. .+.|+++.|++...++.++|+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 333345566666666666665554322244455554433 344566666666666665543
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00011 Score=60.49 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=88.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA---- 261 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 261 (375)
...|++.|++++|++..+... +....-.=+..+.+..+++-|.+.++.|.+- .+..|.+.|.+++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 445667777777777665411 2222222234445566677777777777652 345666666665542
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
.+++..|.-+|++|-++ ..|+..+.+-...++...|++++|+.++++...+..+-.... -|.++.+.....+.+-..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL--~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL--ANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHhCCChHHHH
Confidence 34566777777777553 456777777777777777777777777777766544332222 444444444444444455
Q ss_pred HHHHHHHhC
Q 017234 342 YSVGRMGKQ 350 (375)
Q Consensus 342 ~~~~~m~~~ 350 (375)
+.+.+++..
T Consensus 263 r~l~QLk~~ 271 (299)
T KOG3081|consen 263 RNLSQLKLS 271 (299)
T ss_pred HHHHHHHhc
Confidence 556665543
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=3.3e-05 Score=63.33 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=96.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
..+-..+...|+-+....+........ +.|....+..+....+.|++.+|+..+++... .-++|..+|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 445555555666666655555543221 23445555566666677777777777776664 335666666766667777
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (375)
.|+.++|..-|.+..+.... +....|.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777666666665433 45556666666666677777777666666554 23455555666666666777666666
Q ss_pred HHH
Q 017234 272 LKF 274 (375)
Q Consensus 272 ~~~ 274 (375)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.55 E-value=0.00062 Score=62.86 Aligned_cols=170 Identities=9% Similarity=0.115 Sum_probs=86.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHccCChHHHHHHHHHHHHC----------CCCC
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSL----------GIIP 247 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----------~~~p 247 (375)
.|..+...|-..|+++.|..+|++..+-..+.- ..+|......=.++.+++.|+++++..... |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355666667777777777777776665433211 244555555555666666666666554321 0011
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 248 -------SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 248 -------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
+...|+..+..--..|-++....+|+.+.+..+. ++.+.-.....+-...-++++.+++++-...-.-|+..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1122444444444556666666777666655432 22222222222333344555555555444332223222
Q ss_pred HHHHHHHHHHHHhh---CCHHHHHHHHHHHHhCCCC
Q 017234 321 LHFFSGIIRLYALS---DRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 321 ~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~ 353 (375)
..|+..+.-+.+. -..+.|..+|++.++ |++
T Consensus 548 -diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 548 -DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred -HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 2366655555442 246777777777776 554
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=3.6e-05 Score=62.78 Aligned_cols=119 Identities=10% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH-HccCC--hHH
Q 017234 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS-LKARD--FDS 232 (375)
Q Consensus 156 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~--~~~ 232 (375)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 44455555555555541 2445556666666666666666666666666665543 555555555543 44455 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
|.+++++..+.+ +-+...+..+...+...|++++|...|+.+.+.
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666654 234455666666666666666666666666554
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.6e-05 Score=70.69 Aligned_cols=224 Identities=11% Similarity=0.011 Sum_probs=167.9
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCC
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGN 194 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~ 194 (375)
..+.+.|++.+|.-.|+...+.+ +-+...|--|......+++-..|+..+++..+ +.| |....-.|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhh
Confidence 34567888999999999888774 33678999999999999999999999999887 345 45667788888999999
Q ss_pred HHHHHHHHHHHHHCCCCc--------CHHhHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCH
Q 017234 195 VDAMNKWYAANIAAGFSV--------NVQTYESLIHGSLKARDFDSVDRFYEEMMS-LGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
-..|+..++.-....++- +...-+. ..+.....+....++|-++-. .+..+|......|--.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999999998876654220 1000000 122223334555666666544 45457777788888888899999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
++|...|+.++... +-|..+||.|...++...+.++|...+.+..+ +.|...-..|| |.-.|...|.+++|.+.|-
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHH
Confidence 99999999998864 45677899999999999999999999999988 55654444365 5667899999999999996
Q ss_pred HHHh
Q 017234 346 RMGK 349 (375)
Q Consensus 346 ~m~~ 349 (375)
+.+.
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 6554
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=0.00012 Score=59.82 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=109.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
+-.|...|+++.+....+.+.. |. . .+...++.+++...++...+..+. |...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCC
Confidence 4467788888776555433322 11 0 122366677888888877776654 88888998899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHH
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGL-CARRK--LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 306 (375)
+++|...|++..+.. +.+...+..+..++ ...|+ .++|..++++..+.+ +-+..++..+...+...|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888775 34567777777764 56676 488999999988865 34677788888888899999999999
Q ss_pred HHHHHhCCC
Q 017234 307 LETLTKCNQ 315 (375)
Q Consensus 307 ~~~~~~~~~ 315 (375)
++++.+...
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 998887543
No 95
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=0.00078 Score=60.05 Aligned_cols=267 Identities=14% Similarity=0.154 Sum_probs=196.7
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH-hHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS-AVFN 147 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~ 147 (375)
+...|--..+. ..++++..|..+|+ ........+...|---+..=.+..++..|..+|++.... -|-+ ..|-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~E----RALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWy 145 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFE----RALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH----HHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHH
Confidence 34445444445 58889999999954 444445567777888888888999999999999998865 3433 3555
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc
Q 017234 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 227 (375)
..+..=-..|++..|.++|+.-.+ ..|+...|.+.++.=.+-..++.|..++++.+-. .|++.+|--....-.++
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 666666677999999999998876 5899999999999999999999999999999875 48999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChH
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIP----ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVD 301 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 301 (375)
|....|..+|+...+. ..|.. .+.+...--.+...++.|.-+|+-.++. ++-+ ...|..+...=-+-|+..
T Consensus 221 g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 221 GNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred CcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999988764 12233 3444433344778899999999998875 2323 455666666656667655
Q ss_pred HHHHHH--------HHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 302 ELEEQL--------ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 302 ~a~~~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
..+... +.+.+.+. .+-.+ |--.++.-...|+.+...++|++.... ++|
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np-~nYDs--WfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNP-YNYDS--WFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCC-CCchH--HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 444332 33333332 22333 667777778889999999999999864 544
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=7.8e-05 Score=61.21 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 017234 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (375)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 226 (375)
..+-..+.-.|+-+....+...... ..+.|.......+....+.|++..|...|.+.....+ +|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHH
Confidence 5556667777777777777776553 2234444555677778888888888888888776653 478888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHH
Q 017234 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 306 (375)
.|++++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|+++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888887777653 2234567777777778888888888888777665 33666677777777888888888777
Q ss_pred HHHH
Q 017234 307 LETL 310 (375)
Q Consensus 307 ~~~~ 310 (375)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=0.00012 Score=70.84 Aligned_cols=232 Identities=9% Similarity=-0.030 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHhccCChhHH-HHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFA-MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
++....-+=.+.+..|..++| .+++.+..+ ++..........+++.-...... .++.+...+-.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L 92 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLV 92 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHH
Confidence 344444444455666666665 444444432 44444444444555544444443 346678889999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
.....+.|..++|..+++...+..+. +......+...+.+.+++++|+..++...... +-+......+..++...|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999997654 67788889999999999999999999999875 33456777788888999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+.... |+.++ ++...-...++
T Consensus 171 ~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~--~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 171 EQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARK--LTRRL------VDLNADLAALR 240 (694)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHH--HHHHH------HHHHHHHHHHH
Confidence 99999999999843 4457889999999999999999999999988753 233344 55543 34455667777
Q ss_pred HHHhCCCCccCchhHHHHH
Q 017234 346 RMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 346 ~m~~~~~~~~~~~~~~~~~ 364 (375)
++.-.+...+.+..+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~ 259 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLE 259 (694)
T ss_pred HcCcccccCCCceeeeeHH
Confidence 7776666655555444433
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00023 Score=72.55 Aligned_cols=270 Identities=13% Similarity=0.049 Sum_probs=174.5
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHC----CC-CcCHhHHHHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNES-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI-KPDSAVFNSLICACL 154 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~ 154 (375)
...|++++|...++..+........+ -....+.+...+...|+++.|...+++.... |- .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 48899999999965544322111110 1234566677788899999999999887643 21 111235566677888
Q ss_pred cCCChHHHHHHHHHHHhC---CCCC--C-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcCHHhHHHHHHHH
Q 017234 155 CSGDVVTALSLFEIMVSS---EEYK--P-NSKTYDAFISGFSSLGNVDAMNKWYAANIAA----GFSVNVQTYESLIHGS 224 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~---~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~ 224 (375)
..|++++|...+++..+. .+.. + ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876651 1111 1 1233445556677889999999998876543 2111234455566778
Q ss_pred HccCChHHHHHHHHHHHHCC--CCCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHH
Q 017234 225 LKARDFDSVDRFYEEMMSLG--IIPSIP---IL-EKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKLVKCYC 295 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~--~~p~~~---~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 295 (375)
...|++++|.+.++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875421 111111 11 1122444568899999999877654321111 112445677888
Q ss_pred HcCChHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 296 ELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
..|+.++|...+++.... +..+ ........+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMS-DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999887653 2222 222226667788899999999999999988753
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.0011 Score=59.44 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=85.0
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
+...|++++|++.++.+... .+-|..-+......+.+.++..+|.+.++++....+. .....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 33567777777777776652 2333334445556667777777777777777665322 25555566667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
|..+++...... +-|...|..|.++|...|+..++.....+ .|...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 777776666554 45566777777777777766666554433 33445666666666666555
Q ss_pred C
Q 017234 313 C 313 (375)
Q Consensus 313 ~ 313 (375)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.43 E-value=0.00079 Score=57.58 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=138.5
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHH-HHHHHHHHcCCCh
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF-NSLICACLCSGDV 159 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~ 159 (375)
+.+|++..|+..| -....+++.+-.++..-...|...|+-..|+.=+....+. +||-..- .--...+.+.|.+
T Consensus 49 la~~Q~sDALt~y----HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 49 LARGQLSDALTHY----HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHhhhHHHHHHHH----HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccH
Confidence 5677777777773 3333334334444444455666667666666666666654 4553221 1122345677777
Q ss_pred HHHHHHHHHHHhCCCCCCCh--------------hcH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNS--------------KTY--DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~--------------~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
++|..=|+...+. .|+. ..+ ...+..+...|+...|++....+.+..+ .|...|..-..+
T Consensus 123 e~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc 198 (504)
T KOG0624|consen 123 EQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHH
Confidence 7777777777652 2211 111 2334445566777777777777776543 366677777777
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH----H-------H--
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ----K-------L-- 290 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~-------l-- 290 (375)
|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++...++.++. .||....- . |
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHH
Confidence 777777777765555444432 234455555566666677777777766666653 34433211 1 1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQS-PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+......++|.++..-.+...+.... +......+..+-.++...|++.+|++..++.++
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 11123344555555555554443332 222222244455555566666666666666554
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=3.2e-05 Score=59.68 Aligned_cols=87 Identities=8% Similarity=-0.029 Sum_probs=33.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
.+...|++++|...|+......+. +...|..+..++...|++++|...|+.....+ +.+...+..+..++...|+.++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 333344444444444443333221 33333344444444444444444444443332 2223333333333444444444
Q ss_pred HHHHHHHHH
Q 017234 268 VKSFLKFLL 276 (375)
Q Consensus 268 a~~~~~~~~ 276 (375)
|...++...
T Consensus 111 Ai~~~~~Al 119 (144)
T PRK15359 111 AREAFQTAI 119 (144)
T ss_pred HHHHHHHHH
Confidence 444444433
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00051 Score=61.41 Aligned_cols=183 Identities=20% Similarity=0.065 Sum_probs=132.1
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
.|+...+...+.+......-..+..++-+-.+ +-.....--....+...|..++|+..+..+....+. |+.-+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHH
Confidence 34556666666655544433333333332222 111222223333566789999999999998887644 7777888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
....+.+.++..+|.+.++++... .|+ ....-.+.+++.+.|+..+|..+++...... +-|+..|..|.++|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 889999999999999999999887 455 5666677889999999999999999988764 678899999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+..++.... .+.|.-.|++++|...+.+..+.
T Consensus 423 ~~~~a~~A~--------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLAR--------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHH--------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 988775543 34466778888888888777664
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=0.00052 Score=63.35 Aligned_cols=294 Identities=11% Similarity=-0.013 Sum_probs=176.6
Q ss_pred hHHHHHHHhhh-ccCCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017234 54 QIKTTLDSVDI-FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (375)
Q Consensus 54 ~~~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (375)
...+..+.+.+ .+-.++...-. -+..+.-|+-++|.+. ...-..+.+.+.+.|+.+.-.+....++++|.+.+.
T Consensus 25 kgLK~~~~iL~k~~eHgeslAmk-GL~L~~lg~~~ea~~~----vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHGESLAMK-GLTLNCLGKKEEAYEL----VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred hHHHHHHHHHHhCCccchhHHhc-cchhhcccchHHHHHH----HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 44666666643 23333332211 1111467777788777 445555666777888888888888888888888888
Q ss_pred HHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CC
Q 017234 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FS 211 (375)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~ 211 (375)
.....+ +-|...|..+--.-++.|+++..........+. .+-....|..+..++.-.|+...|..+.++..+.. -.
T Consensus 100 nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 100 NALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 888775 336777777777777888888887777777762 12334556777778888888888888888877654 23
Q ss_pred cCHHhHHHHHH------HHHccCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 017234 212 VNVQTYESLIH------GSLKARDFDSVDRFYEEMMSLGIIPSIPIL-EKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284 (375)
Q Consensus 212 ~~~~~~~~ll~------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 284 (375)
|+...|.-... ...+.|.+++|.+.+.+-... ..|...+ .+-...+.+.+++++|..++..++... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 55555544433 234567777777766555433 2233332 334456678888888888888888764 555
Q ss_pred HHHH-HHHHHHHHcCChHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHH
Q 017234 285 NMAQ-KLVKCYCELGRVDELE-EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 285 ~~~~-~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
.-|. .+..++.+..+.-++. .+|....+.-....... . .=+.......-.+..-.++..+.++|+++-.++..++
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~--R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR--R-LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch--h-ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH
Confidence 5444 4445554333333343 66666655432221111 0 0111111122234455667888888887666655554
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00056 Score=66.27 Aligned_cols=252 Identities=11% Similarity=0.131 Sum_probs=163.8
Q ss_pred HHHHHHhhcCCc-chHHHHHHHhhhccCCCCccc-----HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 017234 41 NPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFS-----WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACL 114 (375)
Q Consensus 41 ~~ll~~l~~~~~-~~~~~~~~~m~~~~~~p~~~~-----~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l 114 (375)
...+.++..++- .+..++++++. ++|++++ -|.||-.+-..+..+.++. ++++...+.|+ +
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIv---L~~S~Fse~~nLQnLLiLtAikad~trVm~Y----I~rLdnyDa~~------i 1054 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIV---LDNSVFSENRNLQNLLILTAIKADRTRVMEY----INRLDNYDAPD------I 1054 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHh---cCCcccccchhhhhhHHHHHhhcChHHHHHH----HHHhccCCchh------H
Confidence 334444444442 24455555553 3444333 2233333444555666666 45555544454 3
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
...+...+-+++|..+|+... .+....+.+|. .-+..|.|.++-++..+ +.+|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCc
Confidence 344556667778888887653 35556666665 34667777776665543 4578899999889999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
..+|.+-|-+ . -|+..|..+++...+.|.|++-.+.+...++...+|... +.||.+|++.+++.+.++++
T Consensus 1120 v~dAieSyik---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 9888876633 2 377789999999999999999998887777776677654 56888999999888877665
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
..||..-...+.+-|...|.++.|.-++..... |..|...++..|+++.|.+.-++
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 246777777777777777777777777654322 56666666666666666655444
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=2.8e-05 Score=59.99 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=60.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 296 (375)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445556666677777777776666554 3355666666666667777777777777766643 3455666666666667
Q ss_pred cCChHHHHHHHHHHHh
Q 017234 297 LGRVDELEEQLETLTK 312 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~ 312 (375)
.|++++|...|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766665
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.6e-05 Score=61.77 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=171.1
Q ss_pred cccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHH-H-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 017234 36 SVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALIT-S-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~-~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~ 112 (375)
+......|-.++-...+. .+.+-+++... ..|...-|...-. . ++.+.+..|+.+ ...|... |+...-.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ADALrV----~~~~~D~--~~L~~~~ 114 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIYADALRV----AFLLLDN--PALHSRV 114 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhcccHHHHHH----HHHhcCC--HHHHHHH
Confidence 444444555555555554 55566666644 3455555554322 2 689999999999 5555433 2211111
Q ss_pred HHH--HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 113 CLI--ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 113 ~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
.-+ ......+++..+..+.++....| +..+.+.......+.|+++.|.+-|+...+-+|+.|-. .|+..+ ++.
T Consensus 115 lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniAL-aHy 189 (459)
T KOG4340|consen 115 LQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLAL-AHY 189 (459)
T ss_pred HHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHH-HHH
Confidence 111 22346789999999999887543 66677777778889999999999999999878887754 677666 455
Q ss_pred cCCCHHHHHHHHHHHHHCCCCc-------------C---------------HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSV-------------N---------------VQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~-------------~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
+.++.+.|++...++.++|+.. | +..+|.-...+.+.|+++.|.+-+-.|.-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 6789999999999998887542 1 12233334445677899999988888853
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 243 L-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 243 ~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
+ ....|++|...+.-.= ..+++....+-++-+++.. +....|+..++-.||+..-++.|-.++.+-
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3 2345677776664322 2344555555566666553 345678888888999998888888877653
No 107
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=7.1e-07 Score=50.25 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 248 (375)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.35 E-value=0.00082 Score=63.31 Aligned_cols=255 Identities=11% Similarity=-0.028 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHH
Q 017234 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166 (375)
Q Consensus 87 ~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 166 (375)
.++++. +++..+.+..|+.+...+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.
T Consensus 461 ~kslqa----le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 461 KKSLQA----LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHH----HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 455555 5666666666666666677778888999999999999998866778999999999999999999999999
Q ss_pred HHHHhCCCCC------------------CChhcHHHHHHHHHc---------CC--------------CHHHHHHHHHH-
Q 017234 167 EIMVSSEEYK------------------PNSKTYDAFISGFSS---------LG--------------NVDAMNKWYAA- 204 (375)
Q Consensus 167 ~~m~~~~~~~------------------~~~~~~~~ll~~~~~---------~~--------------~~~~a~~~~~~- 204 (375)
+...+..|.. ....|+..++..+-. .| +..++.+...+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 9887633220 011222233322220 00 00011110000
Q ss_pred -------HHHCC---------C--CcC------HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 205 -------NIAAG---------F--SVN------VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 205 -------m~~~~---------~--~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
....| + .|+ ...|......+.+.+..++|...+.+..... ......|......+.
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHH
Confidence 00111 0 011 2234455667778888888888877776653 334456666666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE--QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (375)
..|++++|.+.|......+ +-++....++..++.+.|+..-|.. ++.++.+.+ |...-. |..+...+-+.|+.+
T Consensus 696 ~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~ea-W~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEA-WYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHH-HHHHHHHHHHccchH
Confidence 8899999999999887754 3346678899999999999888888 999998855 443333 999999999999999
Q ss_pred HHHHHHHHHHhC
Q 017234 339 DVEYSVGRMGKQ 350 (375)
Q Consensus 339 ~A~~~~~~m~~~ 350 (375)
+|.+.|.-..+-
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00027 Score=69.38 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=141.7
Q ss_pred cCCCC-cccHHHHHHHH-hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH
Q 017234 66 AFNSS-QFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143 (375)
Q Consensus 66 ~~~p~-~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 143 (375)
++.|+ ...|..|+..+ ..+++++|.++ .+.-....+.....|..+...+.+.++...+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i----~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDI----CEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 44443 44566666664 77777777777 4444344443344444444455555654444333
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
.++.......++.-+..++..|.+ ..-+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~ 159 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATS 159 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 233333344445444444444444 2334457778888888889999999999999888754 88888988888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHHc
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE-----GLCARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKCYCEL 297 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 297 (375)
|+.. ++++|.+++.+....-+ +..-|+.+.. ......+.+.-.++.+.+... |..--..++-.+-..|...
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 8888 88999888877765411 0001111111 111233444444444444433 4344455666777888899
Q ss_pred CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 017234 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332 (375)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (375)
++|+++..+++.+.+.... +... ..-++.+|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~-n~~a--~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNK-NNKA--REELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCc-chhh--HHHHHHHHH
Confidence 9999999999999886543 2333 566777775
No 110
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.32 E-value=0.002 Score=59.64 Aligned_cols=247 Identities=15% Similarity=0.087 Sum_probs=147.3
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC---HhHHHHHHHHHHc
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLC 155 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 155 (375)
+..|++.+....+..+......... .-...|..+.+.|-..|+++.|..+|++..+...+-- ..+|-.....=.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 3455666666664322222211111 1245688889999999999999999999887644322 3455555566667
Q ss_pred CCChHHHHHHHHHHHhC----------CCCCC------ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 156 SGDVVTALSLFEIMVSS----------EEYKP------NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 156 ~g~~~~a~~~~~~m~~~----------~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
..+++.|+++.+..... .+.++ +...|...+..--..|-++....+++++.+..+- ++..-..
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 78889999988877651 00011 1223455555556677888888888888887654 4433333
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLC---ARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKC 293 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~ 293 (375)
....+-.+.-++++.++|++-...--.|+. ..|+..+.-+. ....++.|..+|++.++ |++|...- |-.....
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 333444566678888888766554434554 34555554443 23467888888888887 56654332 2222233
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 017234 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330 (375)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (375)
=-+.|....|..++++.-. ++.+.....+||..|.-
T Consensus 596 EEe~GLar~amsiyerat~-~v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 3356777777777777543 34444444445555543
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0025 Score=58.43 Aligned_cols=194 Identities=8% Similarity=-0.002 Sum_probs=115.7
Q ss_pred hHHHHHHhhcC---Ccc-hHHHHHHHhhhccCCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 017234 40 SNPLISRLLQV---PVS-QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (375)
Q Consensus 40 ~~~ll~~l~~~---~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li 115 (375)
...++..+-+. +.. ++.+..+.+.+.+..+....+-.++...+.+.+++|+.+++ .-.....-+...| --.
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik----k~~~~~~~~~~~f-EKA 86 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK----KNGALLVINSFFF-EKA 86 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH----hcchhhhcchhhH-HHH
Confidence 34555555444 333 77888888877664444444444554479999999997742 2110001111111 122
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCc-CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC------------------
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK------------------ 176 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------ 176 (375)
.+..+.+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+. +.+
T Consensus 87 Yc~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhh
Confidence 333477899999988882 233 3446666677888999999999999999762 211
Q ss_pred --------C-ChhcHHHHH---HHHHcCCCHHHHHHHHHHHHHCCCC------cC-H-------HhHHHHHHHHHccCCh
Q 017234 177 --------P-NSKTYDAFI---SGFSSLGNVDAMNKWYAANIAAGFS------VN-V-------QTYESLIHGSLKARDF 230 (375)
Q Consensus 177 --------~-~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~------~~-~-------~~~~~ll~~~~~~g~~ 230 (375)
. ...+|..+- ..+...|++.+|+++++...+.+.+ -+ . ..---|.-.+...|+-
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0 011333332 2345778888888888877332211 11 1 1112234456678888
Q ss_pred HHHHHHHHHHHHCC
Q 017234 231 DSVDRFYEEMMSLG 244 (375)
Q Consensus 231 ~~a~~~~~~m~~~~ 244 (375)
++|..+|.......
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 89998888888775
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=5.8e-05 Score=57.55 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=36.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (375)
+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3333444444444444444443332 1233333334444444444444444444433332 2233333333444444444
Q ss_pred hHHHHHHHHHHHh
Q 017234 300 VDELEEQLETLTK 312 (375)
Q Consensus 300 ~~~a~~~~~~~~~ 312 (375)
+++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 113
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1.1e-06 Score=49.14 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 247 (375)
+|++++.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44455555555555555555555555444443
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.0018 Score=66.15 Aligned_cols=270 Identities=11% Similarity=0.028 Sum_probs=167.4
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCC---CCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH----hHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGN---ESC--LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLIC 151 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~ 151 (375)
...|+++++...++...+.....+ .+. ......+...+...|+++.|...+++..+.-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 578899999888654433322221 111 122223344566889999999999987653111121 34566666
Q ss_pred HHHcCCChHHHHHHHHHHHhCCC-C-CCC--hhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--c-CHHhHHHH
Q 017234 152 ACLCSGDVVTALSLFEIMVSSEE-Y-KPN--SKTYDAFISGFSSLGNVDAMNKWYAANIAA----GFS--V-NVQTYESL 220 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~~-~-~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l 220 (375)
.+...|++++|...+++...... . .+. ..+...+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 77889999999999988775110 0 111 234455667788899999999998876542 221 1 23345555
Q ss_pred HHHHHccCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHH--H--HHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSL--GIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINEN--M--AQKL 290 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~--~--~~~l 290 (375)
...+...|++++|...+++.... ...+. ...+..+...+...|+.+.|...+.+.... ....... . ....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677789999999998887553 11122 334455566777899999999998887542 1111111 1 1112
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+..+...|+.+.|...+........... .....+..+..++...|++++|...+++....
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2445568899999998877554221111 11111346777889999999999999988764
No 115
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0005 Score=62.79 Aligned_cols=119 Identities=12% Similarity=-0.001 Sum_probs=67.2
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
...+++++|.+. .+++...++.|...+..-+-+..+.+++++|+.+.+.-... ..+..-+---..+..+.++.|
T Consensus 23 ~~~~e~e~a~k~----~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 23 GKNGEYEEAVKT----ANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred ccchHHHHHHHH----HHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 566777777777 56666666656666777777777777777777554432211 001111011123334667777
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 210 (375)
+|+..++...+ .+..+...-...+.+.|++++|+++|+.+.+++.
T Consensus 97 ealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 97 EALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 77777663322 2222444445556677777777777777766543
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.5e-06 Score=48.90 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhCCCCcc
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 355 (375)
|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888765
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.29 E-value=0.001 Score=62.64 Aligned_cols=253 Identities=12% Similarity=0.038 Sum_probs=170.0
Q ss_pred hHHHHHHHhhhcc-CCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017234 54 QIKTTLDSVDIFA-FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYACLIALSGKVQNVPFAMHVF 131 (375)
Q Consensus 54 ~~~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (375)
+..+.+++..+.+ -.|++ .|..-+....+++.+.|.+.. .+...- +..+...|..+.-.+...+++.+|+.+.
T Consensus 462 kslqale~av~~d~~dp~~-if~lalq~A~~R~l~sAl~~~----~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLV-IFYLALQYAEQRQLTSALDYA----REALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHhHHHHHHHH----HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3356666664433 34444 444444445778889999884 444444 4578999999999999999999999999
Q ss_pred HHHHH-CCCC------------------cCHhHHHHHHHHHHc---------CC--------------ChHHHHHHHHHH
Q 017234 132 TSMEA-QGIK------------------PDSAVFNSLICACLC---------SG--------------DVVTALSLFEIM 169 (375)
Q Consensus 132 ~~m~~-~g~~------------------p~~~~~~~li~~~~~---------~g--------------~~~~a~~~~~~m 169 (375)
+...+ .|.. -...|...++..+-. .| +..+|.+..+.+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 86653 2210 011222222222220 00 111111111111
Q ss_pred Hh-------CCC---------CCCCh--------hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 170 VS-------SEE---------YKPNS--------KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 170 ~~-------~~~---------~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
.. ..+ +.|+. ..|......+.+.+..++|...+.+..+..+ .....|......+.
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHH
Confidence 10 001 11111 1244556667788888888888888777643 37777888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHH
Q 017234 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS--FLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 303 (375)
..|++++|.+.|......+ +-++...+++...+.+.|+...+.. ++.++.+.+ +.+...|..+...+.+.|+.+.|
T Consensus 696 ~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH
Confidence 9999999999999888764 3446788899999999998888888 999999887 67889999999999999999999
Q ss_pred HHHHHHHHhCC
Q 017234 304 EEQLETLTKCN 314 (375)
Q Consensus 304 ~~~~~~~~~~~ 314 (375)
-+.|+...+..
T Consensus 774 aecf~aa~qLe 784 (799)
T KOG4162|consen 774 AECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhhc
Confidence 99999877643
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00089 Score=57.52 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (375)
+.++.+..|++.+|+++|-++....++.+..-...|.++|.+.+..+.|+.++-++.. |.........+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHH
Confidence 4555666666777777766655444433333334455677777777777766654422 333333345555666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 017234 335 DRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 335 g~~~~A~~~~~~m~~~ 350 (375)
+.+--|-+.|..+...
T Consensus 475 ~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHhhhHHHcc
Confidence 7766666666665543
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00043 Score=63.05 Aligned_cols=251 Identities=10% Similarity=0.082 Sum_probs=183.9
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
.+.|++.+|.-. |+.-.+..+.+...|..|-..-...++-..|+..+.+-.+.. +-+....-+|.-.|...|.-.
T Consensus 296 m~nG~L~~A~La----fEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALA----FEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HhcCCchHHHHH----HHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 689999999988 566666677889999999999999999999999999998875 336778888888999999999
Q ss_pred HHHHHHHHHHhCC---CC--C--CChhcHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 161 TALSLFEIMVSSE---EY--K--PNSKTYDAFISGFSSLGNVDAMNKWYAANI-AAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 161 ~a~~~~~~m~~~~---~~--~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
+|.+.++.-.... .. . ++...-.. ..+.....+....++|-++. +.+..+|+.+...|--.|--.|+++.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999888775511 00 0 00000000 12223334455666666654 44545788888899888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
|.+.|+..+... +-|..+||.|-..++...+.++|...|.+.++. .|+- .+...|.-.|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999998864 446789999999999999999999999999884 5653 455567778899999999999887654
Q ss_pred hCCC---------CCchHHHHHHHHHHHHHhhCCHHHHHHH
Q 017234 312 KCNQ---------SPEVLLHFFSGIIRLYALSDRLDDVEYS 343 (375)
Q Consensus 312 ~~~~---------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (375)
.... .++... |..|=.++.-.++.|-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~i--w~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENI--WQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHH--HHHHHHHHHHcCCchHHHHh
Confidence 3211 111223 77776667777776655443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=9.1e-05 Score=69.05 Aligned_cols=206 Identities=13% Similarity=0.080 Sum_probs=152.9
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
.+.|-...|..+++ + ...|.-+|..|...|+-..|..+..+..+. +||+..|..+.+......-++
T Consensus 409 ~slGitksAl~I~E----r--------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 409 LSLGITKSALVIFE----R--------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHcchHHHHHHHHH----h--------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 47777777777743 2 446788999999999999999999888874 789999988888877777788
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+|.++.+..... .-..+.....+.++++++.+.|+.-.+... .-..+|-..-.+..+.++++.|.+.|..-
T Consensus 475 kawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 888888776541 111222223346788888888887655442 35677777777888888888888888776
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 241 MSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 241 ~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
... .|| ...||.+-.+|.+.|+..+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+.++.+
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 654 344 5778888888888888888888888888776 44556677777777888888888888877654
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0012 Score=54.54 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHH-HHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHH
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 183 (375)
.|.....-.+.......++.+.-+. +.+.+......-+......-...|++.|++++|++...... +.....
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~A 141 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAA 141 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHH
Confidence 3444444444444444454444333 33344433333333444444567889999999999887622 222333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017234 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259 (375)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 259 (375)
.=...+.+..+.+-|.+.+++|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|-++- .|+..+.+-...++
T Consensus 142 l~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 142 LNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHH
Confidence 33445567788999999999999852 56666666666654 456889999999998753 78888999999899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCC
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD-ELEEQLETLTKCN 314 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~ 314 (375)
...|++++|..++++.+...- -++.+...++.+-...|... -..+.+..++...
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 999999999999999988763 45666666666656666554 4566677776643
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0016 Score=53.42 Aligned_cols=194 Identities=10% Similarity=0.059 Sum_probs=138.8
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC-CCH-HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCL-DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (375)
+...++++.++++..+...+..+.. ++. ..|..++-+....|+.+.|...++++...= +-+..+-..-.-.+-..|.
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 5667788888887776666666522 443 456777778888999999999999987662 2222222222223345689
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 238 (375)
+++|+++|+.+.++. +.|..++..-+...-..|+.-+|++-+.+..+.- ..|...|.-+...|...|++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999732 5566677766666777788778888888877763 4599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 017234 239 EMMSLGIIPSIPILEKVLEGLCARR---KLDRVKSFLKFLLGGG 279 (375)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 279 (375)
++.-.. +.+...+..+...+.-.| +.+.+.++|.+.++..
T Consensus 179 E~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 998764 334445555555554443 5677888888887653
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0017 Score=53.28 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=143.5
Q ss_pred ccCChhHHHHHHHHHHH---CC-CCcCHh-HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 120 KVQNVPFAMHVFTSMEA---QG-IKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
...+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+.++ ++-+..+-..-.--+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhc
Confidence 44577888888888763 34 455655 4556677778899999999999999973 33333333332334566899
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+++|.++++.+.+..+ .|.+++---+...-..|+--+|++-+.+..+.- ..|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999999874 488888877888888888889988888887764 67899999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCC
Q 017234 275 LLGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLTKCN 314 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 314 (375)
+.-.. +.++-.+..+...+--.| +.+.|.+.+.+..+..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 97653 445556666666654444 4567888888887744
No 124
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.24 E-value=2.6e-05 Score=70.20 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC--CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcH
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (375)
+.+......+++.+....+++.+..++.+.... ....-..|.+++++.|.+.|..++++.+++.=.. .|+=||..++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhH
Confidence 345556666666666666666777766666644 2222334455777777777777777777766666 6777777777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 227 (375)
|.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555555555555555555443
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=1.9e-06 Score=48.10 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCc
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 141 (375)
+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=0.00011 Score=65.82 Aligned_cols=124 Identities=8% Similarity=0.060 Sum_probs=80.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 296 (375)
-..|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +-+........+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555556677777777777777653 443 3345666666667777777777776542 3455666666666777
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
.++++.|..+.+++.+ ..|+.... |..|..+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~-W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFET-WYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHH-HHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777776 33544322 7777777777777777777776654
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.23 E-value=0.00014 Score=67.89 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=121.8
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
+.+.....++..|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 344456677888888888777653 223346677788888899998888887653 36677888899999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
|..|.++-++. .|.......|-+-..-+-+.|++.+|.++|-.+. .|+ ..|+.|-+.|..+...++..+
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 99888876554 3455566777777777778888888887774443 454 245566667766666666544
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
-... .-..|...+..-|...|++..|+.-|-+..+ |.+-+..|...+-|++|.++-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d-----------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-----------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----------HHHHHHHhhhhhhHHHHHHHH
Confidence 2211 1123444555556666666666655543322 444455555555555555443
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=0.0001 Score=57.00 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQK 289 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 289 (375)
..|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+ ......
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34555555553 677777777777777653 122 12233344666677888888888887777652222 123444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
|...+...|++++|...++........| ..+....+.|.+.|++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~----~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKA----LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHH----HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777888888888776643322222 12666777788888888888877653
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00044 Score=67.89 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=130.5
Q ss_pred ccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 017234 37 VSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113 (375)
Q Consensus 37 ~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~ 113 (375)
...+..|+..+...+.. ++..+.+.-. -..|+...+-.+... ++.++.+.+..+ .
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l--~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------------~ 88 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHL--KEHKKSISALYISGILSLSRRPLNDSNLL--------------------N 88 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCcceehHHHHHHHHHhhcchhhhhhh--------------------h
Confidence 34778888888666655 7777777443 355655544433333 455554444443 3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 193 (375)
++.......++..+..+...|.+. .-+...+-.+..+|-+.|+.++|..+|+++.+ .. +-|..+.|.+...|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-
Confidence 334444444444444444455443 22344666677777777777777777777776 32 44566667777777766
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH-----HccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGS-----LKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
++++|.+++.+....-+ +..-|+.+.... ...-+++.-..+.+.++.. |..--..++-.+-..|-...++++
T Consensus 164 dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 164 DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 77777777766655311 111111111110 1112333444444444433 222233455566677778889999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYC 295 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~ 295 (375)
+..+++.+++.. +-|.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 999999998865 346677777887776
No 130
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.20 E-value=0.0033 Score=58.29 Aligned_cols=265 Identities=11% Similarity=0.009 Sum_probs=143.2
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHH
Q 017234 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (375)
.|..++..+..+++.+.++.. +.+....+.-..+.....-.+...|+-++|......-...++. +...|+.+.-.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~----~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLI----KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 345556666777777777773 3333333323334444444455566777777666666554433 56666666666
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
+-...++++|++.|+..... -+-|...+.-+--.-++.++++.......++.+..+. ....|..+.-++--.|+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777776651 1334455555544455666666666666666665432 44556666666666777777
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 233 VDRFYEEMMSLG-IIPSIPILEKVLE------GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 233 a~~~~~~m~~~~-~~p~~~~~~~li~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
|..+.++..+.. -.|+...|..... .....|..++|.+.+..-... +......-..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777777666543 2344444332221 223556666666555443321 11112222334455666777777777
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHh
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE-YSVGRMGK 349 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 349 (375)
++..+..++ |+...+ |..+..++.+-.+.-++. .+|....+
T Consensus 241 ~y~~Ll~rn--Pdn~~Y-y~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 241 VYRRLLERN--PDNLDY-YEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhhC--chhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 777776643 554442 444444443233333333 55555444
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=0.00012 Score=55.87 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
+......+...+.+.|++++|...|+.....+ +.+...+..+..++.+.|++++|...++...+ . .+.+..++..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-L-DPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCChHHHHHHH
Confidence 33444444455555555555555555554432 22444555555555555555555555555443 1 122334444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 017234 187 SGFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~ 208 (375)
..+...|++++|...|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555555555555554443
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.15 E-value=7.5e-05 Score=67.24 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=98.2
Q ss_pred HHHHh---hhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 017234 58 TLDSV---DIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133 (375)
Q Consensus 58 ~~~~m---~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 133 (375)
++..| ...+..-+......+++. -...+.+.+..++.+ +..-......-..|.+++++.|.+.|..+.++.++..
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k-~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYK-FRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHH-HHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 45555 234445566677777877 466677888888532 1111111212344556999999999999999999999
Q ss_pred HHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcC
Q 017234 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192 (375)
Q Consensus 134 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 192 (375)
=...|+=||..++|.+|+.+.+.|++..|.++...|.. .+.-.+..|+..-+.+|.+-
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887 45556667777777776665
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.00092 Score=60.53 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHH
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG---NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 235 (375)
-+++.++++...+ .-...+..+|..+...--..- ..+...+.++++...-..--..+|-..|+.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIE-GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 3556666666655 222233334443332211111 255666777776655333234568888888888889999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 236 FYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 236 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
+|.+..+.+..+ ++..+++++..+| .++...|.++|+--++. +..++.-....++.+...++-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999988777 7788888888777 67789999999876654 34455666788899999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+.++....+|..++.-=..-|+...+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 788777777999999989999999999999888764
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00013 Score=65.39 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
-..++..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++++..+. .+.+......-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3455566666677777777777776652 33 3344666666666667777777766652 2334444444455566
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
+.++.+.|+++.+++.+..+. +..+|..|..+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777665432 44577777777777777777776666554
No 135
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.11 E-value=9.8e-05 Score=52.51 Aligned_cols=77 Identities=21% Similarity=0.425 Sum_probs=46.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARR--------KLDRVKSFLKFLLGGGWKINENMAQKL 290 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (375)
.|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 666666666666655432 233456666666666666777777766
Q ss_pred HHHHHH
Q 017234 291 VKCYCE 296 (375)
Q Consensus 291 i~~~~~ 296 (375)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00043 Score=65.63 Aligned_cols=239 Identities=14% Similarity=0.080 Sum_probs=152.4
Q ss_pred CcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC-C-------
Q 017234 70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-G------- 138 (375)
Q Consensus 70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g------- 138 (375)
|..|-..+++- ..-|+.+.|.+.+ .-++ +..+|..+.+.|.+.++++-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI----~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSI----QFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHH----HHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 56667777776 2789999998884 3333 4668999999999999999988888777632 1
Q ss_pred -CCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 017234 139 -IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217 (375)
Q Consensus 139 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (375)
-.|+ .+=....-.....|-+++|..+|++-++ |..|=..|-..|.|++|+++-+.=-...+ ..||
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 1122 2222222334567899999999998886 56666778889999999988765333222 3456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMM----------SLG---------IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
..-..-+-..++.+.|++.|++.. ... -..|...|..-.+..-..|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 666666667778888877775431 111 123445555566666677777777777765543
Q ss_pred CCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 279 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|-++++..|-.|+.++|-++-++-.+ ... .-.|.+.|-..|++.+|+..|.+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esgd------~AA--cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESGD------KAA--CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhccc------HHH--HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44455555666666666665543221 111 3345666666666666666665443
No 137
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0026 Score=61.92 Aligned_cols=278 Identities=11% Similarity=0.144 Sum_probs=153.6
Q ss_pred cccchHHHHHHhhcCCcchHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHH----------HHHhhcCC
Q 017234 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWR----------LDKMLKGN 104 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~----------~~~m~~~~ 104 (375)
+.---|.||-...++.+.++.+.++..-... .|+. ... ..++-+++|..+|... ++......
T Consensus 1020 ~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ld 1092 (1666)
T KOG0985|consen 1020 NRNLQNLLILTAIKADRTRVMEYINRLDNYD-APDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLD 1092 (1666)
T ss_pred chhhhhhHHHHHhhcChHHHHHHHHHhccCC-chhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHH
Confidence 3345577777778888887777777663321 1221 111 2333334444442110 22211111
Q ss_pred --------CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 017234 105 --------ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176 (375)
Q Consensus 105 --------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 176 (375)
...+.+|+.+..+-.+.|.+.+|.+-|-+. -|+..|..+++...+.|.+++-.+++...++ ..-.
T Consensus 1093 RA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E 1165 (1666)
T KOG0985|consen 1093 RAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVRE 1165 (1666)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcC
Confidence 135678899999999999988888776543 2788899999999999999999999888877 4444
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH--------------
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-------------- 242 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-------------- 242 (375)
|... +.|+-+|.+.++..+.++++. -||......+.+-|...|.++.|.-+|.....
T Consensus 1166 ~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1166 PYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred ccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5444 478889999988877665541 25555555555555555555555544433210
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 017234 243 ------LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 243 ------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (375)
..-..+..||..+-.+|...+.+.-| +|-..++.....-..-++..|-..|-+++...+++.-. |+.
T Consensus 1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLE 1309 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLE 1309 (1666)
T ss_pred HHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chh
Confidence 00012233444444444443333222 12122223334445556666777777776666665432 222
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
. .+...|+-|.-.|.+- ++++..+.++
T Consensus 1310 R-AHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1310 R-AHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred H-HHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 2 2222355555555443 3344444433
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00026 Score=54.74 Aligned_cols=124 Identities=14% Similarity=0.040 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcC---HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh--hcHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAF 185 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~l 185 (375)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.... ..-.|+. ...-.+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 44444444 3555566666666665542 112 12223344555566666666666666665 2211111 122234
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 239 (375)
...+...|++++|+..++...... .....+......|...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555566666666666665533222 2344555556666666666666666654
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=5.1e-06 Score=45.22 Aligned_cols=29 Identities=38% Similarity=0.597 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 244 (375)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.07 E-value=0.0085 Score=54.55 Aligned_cols=152 Identities=10% Similarity=0.096 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHccCChHHHHHH
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
..+....+++++.....+.|+. +|...++.-.+..-+..|..+|.+..+.+..+ ++.++++++..||. ++.+-|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 3667778888887755556655 68888998889999999999999999998877 88999999998875 788999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
|+-=.+.- .-+..-....+.-+...++-..+..+|++.+..++.||. .+|..++..=+..|++..+.++-+++..
T Consensus 424 FeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 98766552 223344556777788999999999999999998766664 6799999999999999999998887654
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=6.7e-05 Score=53.32 Aligned_cols=77 Identities=17% Similarity=0.333 Sum_probs=47.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCC-CcCHhHHHHHHHHHHcCC--------ChHHHHHHHHHHHhCCCCCCChhcHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGI-KPDSAVFNSLICACLCSG--------DVVTALSLFEIMVSSEEYKPNSKTYD 183 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 183 (375)
.-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|++|.. .+++|+..||+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHHH
Confidence 445555555777777777777777777 677777777777665532 23345555666655 55666666666
Q ss_pred HHHHHHH
Q 017234 184 AFISGFS 190 (375)
Q Consensus 184 ~ll~~~~ 190 (375)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6555543
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.04 E-value=0.01 Score=57.21 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=40.5
Q ss_pred hccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHH
Q 017234 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 197 (375)
.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.++|..+|++... ..|+..-...+..+|.+.+.+.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHH
Confidence 3555555666555555444333 555555555566666666666666665554 23444444555555555555543
No 143
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.0036 Score=54.86 Aligned_cols=110 Identities=11% Similarity=0.177 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
.+.+..|.-+...|+...|.++-.+.+ .||..-|-..+.+++..++|++...+-.. . -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 345555777788899888888877775 68999999999999999999988876432 1 1346688899999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
.+.|+..+|...+.++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~------~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC------C------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998888762 2 34457778999999999776543
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0018 Score=55.72 Aligned_cols=201 Identities=9% Similarity=0.026 Sum_probs=131.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC-------ChHHHHHHHHHHHhCCCCCCChh-c
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-------DVVTALSLFEIMVSSEEYKPNSK-T 181 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~-~ 181 (375)
.--.++-.|.+.+++++|..+...+. +.++.-|-.-.-.++..| +..-|.+.|+-.-+ ++..-|+. -
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~-Sa~ecDTIpG 361 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE-SALECDTIPG 361 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc-cccccccccc
Confidence 33456667888899999988877654 223333332222233333 24455555554444 44444433 2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE-KVLEGLC 260 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~ 260 (375)
-.++..++.-..++++++-.++..+.--..-|...+ .+..+++..|.+.+|+++|-.+....++ |..+|. .|..+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 346666777777889988888888776554445444 4688999999999999999877655544 445554 5557788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
+.++.+.|+.++-.+.. +.+..+. ..+.+-|-+.+.+--|-+.|+.+...++.|..+
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 99999998877654432 2233443 334467888999999999999999877777554
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1.1e-05 Score=43.82 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
|+.++++|++.|++++|.++|++|.+.|+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 77888888888888888888888877764
No 146
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.014 Score=53.05 Aligned_cols=125 Identities=9% Similarity=0.103 Sum_probs=89.5
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPI-------------------------LEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
+|.+.++++.+...|.+.......|+..+ .-.-.+.+.+.|++..|...|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 55556778888888777655444443322 11224566788999999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 278 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
.. +-|...|..-.-+|.+.|.+..|.+=.+...+. .|+.... |.-=..++....+|+.|.+.|.+..+..
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kg-y~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKA-YLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76 667888999999999999999998887777774 4543332 5555555666678899999998887763
No 147
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00021 Score=57.40 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHhcc-----CChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh
Q 017234 105 ESCLDEYACLIALSGKV-----QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 179 (375)
..+..+|..++..|.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 35777788888877644 6778888888999999999999999999988865 3321 111111111
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCCh-HHHHHHHHHH
Q 017234 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-DSVDRFYEEM 240 (375)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m 240 (375)
.- --.+-+-|++++++|...|+-||..++..+++.+.+.+.. .+..++.-.|
T Consensus 113 -------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 -------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred -------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 10 1123345667777777777777777777777777666553 3344444444
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00035 Score=48.75 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=9.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHH
Q 017234 325 SGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m 347 (375)
..+...+...|++++|...+.+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334444444444444444433
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.89 E-value=0.00047 Score=55.39 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=71.2
Q ss_pred CcCHhHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH
Q 017234 140 KPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (375)
..+..+|..+++.|.+. |..+-....++.|.+ .|+.-|..+|+.||+.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV---------------PRN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc---------------ccc
Confidence 34667777777776643 566666777777777 7777777777777776554 2221 111
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
.+.++..- .-.+-+-|++++++|...|+.||..|+..+++.+++.+.
T Consensus 107 -~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 -FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 223567799999999999999999999999999987764
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00039 Score=60.10 Aligned_cols=129 Identities=7% Similarity=0.118 Sum_probs=62.6
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 259 (375)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|-..... +...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666554321 122222222222 22234444566666665544 133444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKIN---ENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.+.++.+.|..+|++.... +.++ ...|...++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666665543 2211 13555555555556666666666555555
No 151
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.88 E-value=0.0018 Score=62.81 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=151.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
+...+...++..| -+-.+..+.=...|..+...|+...+...|.+.|+...+.+ ..+...+....+.|++..+++
T Consensus 469 ~~rK~~~~al~al----i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 469 CMRKNSALALHAL----IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HhhhhHHHHHHHH----HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 4555566777764 23333344446789999999999889999999999998775 347778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
.|..+.-..-+......-...|....-.|.+.++..+|..-|+......+. |...|..+..+|...|++..|.++|.+.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 999984433331111112223444555678888999999999998887765 8999999999999999999999999888
Q ss_pred HHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 017234 241 MSLGIIPSIPILEKVL--EGLCARRKLDRVKSFLKFLLGG------GWKINENMAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 241 ~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
... .|+ .+|...- -.-+..|++.++...+...... +..--..++-.+...+...|-..+|...++.
T Consensus 623 s~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 623 SLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred Hhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 765 444 2333332 2346789999999988877542 1111223333333444444444445444444
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00063 Score=64.56 Aligned_cols=213 Identities=11% Similarity=0.087 Sum_probs=154.1
Q ss_pred CCHHHHHHHHH--HHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--------
Q 017234 106 SCLDEYACLIA--LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-------- 175 (375)
Q Consensus 106 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------- 175 (375)
-|..|-..+++ .|..-|+.+.|.+-.+.++ +..+|..|.+.|.+..++|-|.--+..|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46777777765 4678899999998887765 6778999999999999988888777777653221
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017234 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (375)
.|+ .+-.-..-.....|.+++|..+|.+.+. |..|=..|...|.|++|.++-+.=-+-. -..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 232 2222222334678999999999998876 4556677888999999998875433222 23577777
Q ss_pred HHHHHhcCCHHHHHHHHHHH----------HhCC---------CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 017234 256 LEGLCARRKLDRVKSFLKFL----------LGGG---------WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (375)
...+-..++.+.|++.|+.. +... -.-|...|..-...+-..|+++.|..++...++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 77777888999998888753 2111 123556666666777788999999999987765
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|-++++..|-.|+.++|-++-++-.
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg 965 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG 965 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc
Confidence 6778888888899999888776543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.0008 Score=49.74 Aligned_cols=99 Identities=7% Similarity=-0.062 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGW--KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
+..+...+.+.|++++|...+..+.+..- ......+..+..++.+.|+++.|...++.+.............+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555556666666666666554320 0112344445556666666666666666655433221111111444555
Q ss_pred HHHhhCCHHHHHHHHHHHHhC
Q 017234 330 LYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~ 350 (375)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666554
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00088 Score=49.52 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCC--CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CCChhcHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFIS 187 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~ll~ 187 (375)
+..+...+.+.|++++|.+.|+.+.+... +.....+..+..++.+.|++++|...|+.+.....- +.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444444555555555544443210 001223334444444555555555555544431100 001223334444
Q ss_pred HHHcCCCHHHHHHHHHHHHHC
Q 017234 188 GFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~ 208 (375)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444444555555555444444
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.0005 Score=47.96 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=5.4
Q ss_pred HHHHcCChHHHHHHH
Q 017234 293 CYCELGRVDELEEQL 307 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~ 307 (375)
.+...|++++|...+
T Consensus 77 ~~~~~~~~~~a~~~~ 91 (100)
T cd00189 77 AYYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHHhHHHHHHHH
Confidence 333333333333333
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.79 E-value=0.0028 Score=59.68 Aligned_cols=109 Identities=7% Similarity=0.172 Sum_probs=62.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
+.+....++|.+|+.+++.++..... .--|..+.+.|+..|+++.|.++|.+. ..++--|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 34445566777777777777765432 234666667777777777777777542 1244456777777777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
++|.++-.+... |......|-+-..-+-++|++.+|.++|
T Consensus 808 ~da~kla~e~~~----~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC----chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777776655421 2222222444444445555555554444
No 157
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.035 Score=50.58 Aligned_cols=222 Identities=10% Similarity=-0.012 Sum_probs=140.6
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHH-
Q 017234 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC- 151 (375)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 151 (375)
...+.++ ++..+++.+++-+ +...... .+..-++....+|...|.+..+...-+...+.|-. ...-|+.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y----~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~ 300 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHY----AKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA 300 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHH----HHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH
Confidence 4456666 6777888888884 4433333 45666777777888888887777777666655522 3333443333
Q ss_pred ------HHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 152 ------ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 152 ------~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
+|.+.++++.++..|.+... ....|+. ..+....+++....+...-.++..-.. ...-...+.
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~F 369 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALT-EHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEE-EREKGNEAF 369 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhh-hhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHH
Confidence 44455677888888887665 2222221 122333445555444444433332111 222256677
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
+.|++..|...|.++.... +-|...|+.-.-+|.+.|.+..|..=-+...+.. ++....|..=..++....++++|.+
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988876 5567888888888889999888888777766653 3334445555556666778888888
Q ss_pred HHHHHHhCC
Q 017234 306 QLETLTKCN 314 (375)
Q Consensus 306 ~~~~~~~~~ 314 (375)
.|++..+.+
T Consensus 448 ay~eale~d 456 (539)
T KOG0548|consen 448 AYQEALELD 456 (539)
T ss_pred HHHHHHhcC
Confidence 888887754
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.70 E-value=0.027 Score=48.54 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=37.0
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 154 LCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
.-+|+...|+.....+.+ +.| |...+..-..+|...|++..|..=++...+..-. ++.++--+-..+-..|+.+.
T Consensus 166 ~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred hcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHH
Confidence 344455555555555544 122 3333334444455555555544444443333222 33333333444444455555
Q ss_pred HHHHHHHHHH
Q 017234 233 VDRFYEEMMS 242 (375)
Q Consensus 233 a~~~~~~m~~ 242 (375)
++...++-.+
T Consensus 242 sL~~iRECLK 251 (504)
T KOG0624|consen 242 SLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHc
Confidence 5544444443
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.0044 Score=47.58 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 303 (375)
+...|++++|.++|+.+...+ +-+..-|-.|.-+|...|++++|...|....... +-|+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 334444444444444443332 1122333333333344444444444444443333 22333344444444444444444
Q ss_pred HHHHHHH
Q 017234 304 EEQLETL 310 (375)
Q Consensus 304 ~~~~~~~ 310 (375)
++.|+..
T Consensus 123 ~~aF~~A 129 (157)
T PRK15363 123 IKALKAV 129 (157)
T ss_pred HHHHHHH
Confidence 4444443
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0015 Score=51.87 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc--CHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443332111 112344444444444555555444444443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.019 Score=49.85 Aligned_cols=126 Identities=10% Similarity=0.154 Sum_probs=55.7
Q ss_pred HHHHHcc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----cCHH-HH
Q 017234 221 IHGSLKA-RDFDSVDRFYEEMMS----LGIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-----INEN-MA 287 (375)
Q Consensus 221 l~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~ 287 (375)
...|-.. |++++|.+.|++..+ .| .+. ..++..+...+.+.|++++|.++|++....... .+.. .+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344444 556666655555433 12 111 133445555566666666666666666543211 1111 12
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHhh--CCHHHHHHHHHHH
Q 017234 288 QKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGIIRLYALS--DRLDDVEYSVGRM 347 (375)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m 347 (375)
-..+-++...||...|.+.+++..... +..+....+...|+.+|-.. ..+++|+.-|+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 223334555666666666666665432 22222222244555554332 2244444444433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0016 Score=56.41 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
.+|..++...-+.+..+.|.++|.+..+...+..+.....+++. |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 47888888888888899999999999863223333333334443 33356777799999998876 34477888888999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
+...|+.+.|..+|++.... .|.. ..|...+..-.+.|+++.+..+.+++.+. -|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998866 3333 48888888888999999999999988874 34544444444433
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0023 Score=57.42 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=40.9
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (375)
+...|++++|.+.|.+..+.... +...|..+..+|...|++++|+..+++..... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555444332 34444444445555555555555555544432 12334444444444455555555
Q ss_pred HHHHHHHHh
Q 017234 269 KSFLKFLLG 277 (375)
Q Consensus 269 ~~~~~~~~~ 277 (375)
...+++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555554444
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.031 Score=47.24 Aligned_cols=186 Identities=10% Similarity=0.069 Sum_probs=114.2
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh-cH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TY---DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (375)
+...+-.....+.+.|++++|.+.|+++... -|+.. .- -.+..++.+.+++++|...+++..+..+.-...-|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 3333434455556789999999999999873 34332 22 34567788999999999999998887554333444
Q ss_pred HHHHHHHHc--cC---------------Ch---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 218 ESLIHGSLK--AR---------------DF---DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 218 ~~ll~~~~~--~g---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
-..+.+.+. .+ |. .+|...|+++ +.-|-.+.-..+|...+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHH
Confidence 444444432 11 11 2233334443 3333344445555555544432
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 278 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
. .-.. --.+.+.|.+.|.+..|..-++.+.+.-............++.+|.+.|..++|..+...+..
T Consensus 173 ~---la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 173 R---LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred H---HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1 0111 114667788999999999999998876443333333366788999999999999888776643
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0084 Score=47.80 Aligned_cols=91 Identities=9% Similarity=0.000 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC--HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 184 (375)
....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+. .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 456677888888888999999988888876543222 357788888888888888888888888762 1234455666
Q ss_pred HHHHHHcCCCHHHHH
Q 017234 185 FISGFSSLGNVDAMN 199 (375)
Q Consensus 185 ll~~~~~~~~~~~a~ 199 (375)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666777766654433
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=9e-05 Score=51.25 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=6.4
Q ss_pred HHHHHcCCCHHHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWY 202 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~ 202 (375)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0061 Score=48.57 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555554443322211 23344444444444444444444444443
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.0046 Score=47.46 Aligned_cols=94 Identities=7% Similarity=-0.047 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (375)
-.+..-+...|++++|..+|+.+..-. +-+..-|-.|.-++-..|++++|...+......++ +.... +-.+..++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~-~~~ag~c~L 114 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQA-PWAAAECYL 114 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchH-HHHHHHHHH
Confidence 334444556666666666666665543 22344455555666666666666666666655442 22111 444556666
Q ss_pred hhCCHHHHHHHHHHHHhC
Q 017234 333 LSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~ 350 (375)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655553
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00016 Score=50.02 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 017234 263 RKLDRVKSFLKFLLGGGW-KINENMAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 263 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
|+++.|..+++++.+..- .++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444445555544444321 01222333344445555555555555544
No 170
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.028 Score=53.26 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=156.6
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHhccCChhHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMH 129 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 129 (375)
++.+.+++-.+....| ..+|..+... +..|+++-|..+++ ++.-....+| +..-+...+.-+.+.|+.+....
T Consensus 491 ~vld~I~~kls~~~~~-~iSy~~iA~~Ay~~GR~~LA~kLle--~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~ 567 (829)
T KOG2280|consen 491 EVLDKIDEKLSAKLTP-GISYAAIARRAYQEGRFELARKLLE--LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQ 567 (829)
T ss_pred HHHHHHHHHhcccCCC-ceeHHHHHHHHHhcCcHHHHHHHHh--cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHH
Confidence 3444444443333344 4456666666 89999999999964 3322222222 56667888899999999999988
Q ss_pred HHHHHHHCC-----------CCcCHhHHHHHHHH--------HHcCCChHHHHHHH--HHHHhCCCCCCChhcHHHHHHH
Q 017234 130 VFTSMEAQG-----------IKPDSAVFNSLICA--------CLCSGDVVTALSLF--EIMVSSEEYKPNSKTYDAFISG 188 (375)
Q Consensus 130 ~~~~m~~~g-----------~~p~~~~~~~li~~--------~~~~g~~~~a~~~~--~~m~~~~~~~~~~~~~~~ll~~ 188 (375)
++-++...- .+.....|.-+++- +...++-.++..-| +.......+.+-........++
T Consensus 568 Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 568 VLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 888776531 11111222222220 01111111111111 1100000011111222334444
Q ss_pred HHcCCCHH----------HHHHHHHHHHH-CCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017234 189 FSSLGNVD----------AMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (375)
Q Consensus 189 ~~~~~~~~----------~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (375)
+.+..... +-+.+.+.+.. .|..-...+.+--+.-+...|+-.+|.++-.+.+ -||...|-.=+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 44443311 11222233322 2323334445555667788899999998888777 789888888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCH
Q 017234 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (375)
+++..++|++.+++-+.... +.-|.-++.+|.+.|+.++|.+.+.+... +.-.+.+|.+.|++
T Consensus 724 aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDV 786 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccH
Confidence 99999999998777655432 34466688999999999999998865422 23457788999999
Q ss_pred HHHHHHHHH
Q 017234 338 DDVEYSVGR 346 (375)
Q Consensus 338 ~~A~~~~~~ 346 (375)
.+|.++--+
T Consensus 787 ~eAad~A~~ 795 (829)
T KOG2280|consen 787 KEAADLAAE 795 (829)
T ss_pred HHHHHHHHH
Confidence 888876543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.0037 Score=56.16 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
...+...|++++|++.|++..+. -+-+...|..+..+|...|++++|...+++..+.... +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 44556778888888888888762 1334566777777788888888888888888776543 66777777888888888
Q ss_pred hHHHHHHHHHHHHCC
Q 017234 230 FDSVDRFYEEMMSLG 244 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~ 244 (375)
+++|...|++..+.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888877653
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.013 Score=55.14 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=97.9
Q ss_pred CCCcCHHhHHHHHHHHHccC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 017234 209 GFSVNVQTYESLIHGSLKAR-----DFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCAR--------RKLDRVKSFLKF 274 (375)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~--------g~~~~a~~~~~~ 274 (375)
+.+.|...|...+.+..... +.+.|.++|++..+. .|+ ...|..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44568889999988865432 366899999999887 455 44555544444322 122334444444
Q ss_pred HHhC-CCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 275 LLGG-GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 275 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
.... ....+...|..+.-.....|++++|...+++..+.+ |+... |..+...+...|+.++|.+.+++... +.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a--~~~lG~~~~~~G~~~eA~~~~~~A~~--L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLN--YVLLGKVYELKGDNRLAADAYSTAFN--LR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3332 234456778887777777899999999999999865 55544 89999999999999999999999875 45
Q ss_pred ccCch
Q 017234 354 FKSAE 358 (375)
Q Consensus 354 ~~~~~ 358 (375)
|..|+
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 55554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.005 Score=48.86 Aligned_cols=95 Identities=5% Similarity=-0.156 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
..+..+...+...|++++|...+++.....-.+ ...++..+...+...|++++|...++...... |..... +..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~-~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQA-LNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHH-HHHH
Confidence 344555555556666666666666665432111 12356666666666777777777766665532 222211 4444
Q ss_pred HHHHH-------hhCCHHHHHHHHHHH
Q 017234 328 IRLYA-------LSDRLDDVEYSVGRM 347 (375)
Q Consensus 328 i~~~~-------~~g~~~~A~~~~~~m 347 (375)
...+. ..|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 44444 667766555555443
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.45 E-value=0.13 Score=50.04 Aligned_cols=215 Identities=9% Similarity=0.011 Sum_probs=144.3
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 130 (375)
+|........+ -.|+. .|..++.+ .+.|+.++|..+ ++.....+..|..|...+-..|.+.++.++|..+
T Consensus 27 kal~~~~kllk--k~Pn~-~~a~vLkaLsl~r~gk~~ea~~~----Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 27 KALAKLGKLLK--KHPNA-LYAKVLKALSLFRLGKGDEALKL----LEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHH--HCCCc-HHHHHHHHHHHHHhcCchhHHHH----HhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444422 23443 34555555 499999999988 6666666667999999999999999999999999
Q ss_pred HHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC----------HHHHHH
Q 017234 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN----------VDAMNK 200 (375)
Q Consensus 131 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~ 200 (375)
+++.... -|+..-...+..+|.+.+.+.+-.+.--++-+ .++.+...|-++++.....-. ..-|.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999876 57788888888899998887654444333333 234455566666655543221 234666
Q ss_pred HHHHHHHCC-CCcCHHhHHHHHHHHHccCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 201 WYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEE-MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 201 ~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
.++.+.+.+ .--+..-...-...+-..|++++|++++.. .-+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 777766654 222232233334445577889999999943 333333344455556677788899999999999999888
Q ss_pred C
Q 017234 279 G 279 (375)
Q Consensus 279 ~ 279 (375)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 7
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.019 Score=49.88 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCC-cCHHHHHHHH
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKLDRVKSFLKFLLGG----GWK-INENMAQKLV 291 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 291 (375)
...+..|...|++..|-++ +..+...|... |+++.|.+.|++..+. |-. .-..++..+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~---------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKC---------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHH---------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 3334445555555555444 44445566666 8999999999887542 311 1134567788
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCC-----chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHH
Q 017234 292 KCYCELGRVDELEEQLETLTKCNQSP-----EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 364 (375)
..+.+.|++++|.++|+++....... +.... |-..+-++...|+.-.|...+++...............++.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~-~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY-FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH-HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 89999999999999999987653321 22222 33344466778999999999999987644433444444443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.053 Score=45.83 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=22.1
Q ss_pred HHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 222 HGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
.-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344444444444444444443 111222333344444444444444444443
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0043 Score=52.32 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|.+--+..+.-+ +--..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3566777888888887777764 3455666777777888888777777666665532 1224567777778888888888
Q ss_pred HHHHHHHHHhCCCCCchHH
Q 017234 303 LEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~ 321 (375)
|.+.|++..+ +.|+..+
T Consensus 168 A~~aykKaLe--ldP~Ne~ 184 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNES 184 (304)
T ss_pred HHHHHHhhhc--cCCCcHH
Confidence 8877777766 5566554
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.013 Score=43.24 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
.++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555443322 12333344444455555555555555443
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0011 Score=43.51 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
|++++|.++|+++.+..+. +...+..+..+|.+.|++++|.++++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444443333222 33333334444444444444444444333
No 180
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.26 E-value=0.0044 Score=46.17 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
|..++.++|.++++.|+++....+++..-. +.++... ..+. ........|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 456778888888888888888887765432 2211100 0000 111133445555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC-CCCcCHHhHHHHHHHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGS 224 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~ 224 (375)
.+|+..+++..|+++.+...+. +++.+..+|..|++-.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5555555555555555544332 4444455555555543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.04 Score=51.97 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHhcc-----CChhHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHcC--------CChHHHHHHHHHH
Q 017234 104 NESCLDEYACLIALSGKV-----QNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCS--------GDVVTALSLFEIM 169 (375)
Q Consensus 104 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~--------g~~~~a~~~~~~m 169 (375)
.+.|...|...+.+.... ++...|.++|++..+. .|+ ...|..+..++... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345566666666654332 2255666677666665 343 22333332222211 1223344444433
Q ss_pred HhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 170 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
......+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.|++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3211123344556666555556677888888887777764 56777777777777788888887777777665
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.03 Score=41.30 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=25.5
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcC--HhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
.++-..|+.++|..++++..+.|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 22333344444444555555555554443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.003 Score=41.00 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
...+...|++++|...|+.+.+.. |+.... +..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a-~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEA-WYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666544 322221 55566666666666666666666654
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.076 Score=44.18 Aligned_cols=136 Identities=11% Similarity=0.083 Sum_probs=104.6
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL---- 256 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li---- 256 (375)
+.++++..+.-.+.+.-....+++..+...+.++.....|.+.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 5667788888888899999999999998877789999999999999999999999999887653344444444443
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 257 -EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 257 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
..+.-++++-.|...+.++...+ ..|+...|.-.-+..-.|+..+|.+.++.|.+..+.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34456678888888888887765 3455656655555566899999999999999865444
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.13 E-value=0.065 Score=52.63 Aligned_cols=184 Identities=8% Similarity=0.004 Sum_probs=133.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHH
Q 017234 158 DVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
+...|+..|=+..+ +.|+ ...|..|...|+...+...|.+.|....+.... +...+....+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 35666665555544 2333 357889999999988999999999998887643 778899999999999999999998
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 237 YEEMMSLGIIPSIPI--LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 237 ~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
.-..-+.. +.-... |...--.|...++...+..-|+...... +-|...|..+..+|.++|.+..|.++|.+...
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 33322221 111122 2233335668899999999999888765 44778899999999999999999999999877
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+.|+.....|-.-+ .-+..|.+.+|...+......
T Consensus 625 LrP~s~y~~fk~A~-~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAV-MECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cCcHhHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHH
Confidence 55655533333222 246779999999988777653
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0027 Score=41.20 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=7.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 017234 185 FISGFSSLGNVDAMNKWYAAN 205 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m 205 (375)
+..++...|++++|...|++.
T Consensus 37 lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 37 LGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.056 Score=44.95 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH--
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-- 221 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-- 221 (375)
.+-+.++.++.-.|.+.-....+++.++ ..-+.++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3445555555556666666666666665 3334455555566666666666666666666554433233333333332
Q ss_pred ---HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 222 ---HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 222 ---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
..|.-.+++.+|...|++....+ ..|....|.=.-+..-.|+...|.+.++.+.+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23444556666666666665543 223333333333333456666666666666553
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.96 E-value=0.02 Score=44.22 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
++..+...|++++|.++.+.+.... +.|...|..+|.++...|+...|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444444444444444433 233444444444444444444444444443
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.18 Score=47.42 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH---------
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--------- 321 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------- 321 (375)
+...+..-+-+...+..|.++|..|-+ ..++++.....++|++|..+-+...+. .|+...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 333333334445555556666655532 123455555666666666666555442 122111
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
..|...-++|.+.|+-.+|..+++++....+.-
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E 850 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAE 850 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhh
Confidence 114455567778888888888888877665543
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.015 Score=49.14 Aligned_cols=153 Identities=11% Similarity=0.008 Sum_probs=104.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
.+-..+.+++.+|+..|.+.++..+. |.+-|..=..+|++.|.++.|.+=.+.....+ +--..+|..|-.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34467889999999999999998654 88888999999999999999998887777653 22357899999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HHcCChH---HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCY-CELGRVD---ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
++|.+.|+..++ +.|+-.+|-.=+... -+.+..+ .+..-++-....|..|+.... |+ ...-.-....
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~-~~------~~l~nnp~l~ 236 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSM-FN------GDLMNNPQLM 236 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhh-hc------cccccCHHHH
Confidence 999999999887 567777665544332 2333333 233333333333444443321 22 1222334455
Q ss_pred HHHHHHHh
Q 017234 342 YSVGRMGK 349 (375)
Q Consensus 342 ~~~~~m~~ 349 (375)
.+...|..
T Consensus 237 ~~~~~m~~ 244 (304)
T KOG0553|consen 237 QLASQMMK 244 (304)
T ss_pred HHHHHHhh
Confidence 56666666
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.023 Score=48.44 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=35.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcC
Q 017234 225 LKARDFDSVDRFYEEMMSLGIIPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELG 298 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 298 (375)
.+.|++++|...|+.+.+.. |+ ...+..+..+|...|++++|...|+.+.+.- -......+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33445555555555544432 22 1233444444444445555544444444321 0111222333333444444
Q ss_pred ChHHHHHHHHHHHh
Q 017234 299 RVDELEEQLETLTK 312 (375)
Q Consensus 299 ~~~~a~~~~~~~~~ 312 (375)
+.++|...++.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444444
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0026 Score=41.72 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=37.9
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+.|++++|.+.|+++.+.. +-+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4566777777777766553 225666666777777777777777777777652 3554444433
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.17 Score=41.51 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 017234 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 136 (375)
|..-...+..|++.+|.+.|+.+...-.. +.--....-.++.++.+.|+++.|...++++.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333335555555555554332222111 111123333445555555555555555555544
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.15 Score=40.27 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=69.0
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCCHHHH
Q 017234 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---IIPSIPIL 252 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~ 252 (375)
.|+...--.|..+..+.|+..+|...|++....-.--|....-.+.++....+++..|...++++-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555555566666666666666666665544344455555555666666666666666666655532 2233 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHH
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 307 (375)
-.+...+...|+..+|+..|+..... -|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33445555666666666666666553 344444333444555556555544333
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.008 Score=39.48 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHh
Q 017234 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-RLDDVEYSVGRMGK 349 (375)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 349 (375)
+..+|..+...+...|++++|...|++..+.+ |+.... |..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~-~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEA-YYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH-HHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666667777777777777666643 433222 666666666666 56777776666554
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.28 Score=43.19 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
.+.+..|.-+...|+...|.++-.+.. .||...|..-+.+++..++|++-.++... + ..| .- |..++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k--KsP--IG--yepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K--KSP--IG--YEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C--CCC--CC--hHHHHH
Confidence 456666778888999998888876652 48999999999999999999988886543 2 223 22 899999
Q ss_pred HHHhhCCHHHHHHHHHH
Q 017234 330 LYALSDRLDDVEYSVGR 346 (375)
Q Consensus 330 ~~~~~g~~~~A~~~~~~ 346 (375)
+|.+.|+..+|..+..+
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 99999999999999877
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.83 E-value=0.33 Score=43.31 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+..++.++.-.|+.++|.+..++|...
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 445555555555555555555555543
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.82 E-value=0.031 Score=47.69 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=36.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (375)
.+.|++++|...|+.+.+.. |+ ...+..+...|...|++++|...|+.+.+...........+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33444555554444444431 22 1233444444444555555555554444322211111111222333444445
Q ss_pred CHHHHHHHHHHHHh
Q 017234 336 RLDDVEYSVGRMGK 349 (375)
Q Consensus 336 ~~~~A~~~~~~m~~ 349 (375)
+.++|..+|+++.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.82 E-value=0.0065 Score=39.91 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG-RVDELEEQLETLTK 312 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 312 (375)
.+|..+...+...|++++|...|++.++.. +.+...+..+..+|...| ++++|.+.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555532 223444555555555555 45555555555443
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.025 Score=42.18 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=28.9
Q ss_pred CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 017234 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLC 260 (375)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~ 260 (375)
..|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|++-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666666666666666666666666555543 44555555665555443
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.008 Score=46.43 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=44.5
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPI 251 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 251 (375)
+...++..+...|++++|..+...+....+. |...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677777788888877777776543 777777788888888888888777777643 377776654
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.16 Score=43.24 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC---ARRKLDRVKSFLKFLLGGGWKINENMAQK 289 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (375)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++. ......++..++++++... +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66667777777777777777777776666542 233344444444333 2224455666666666654 334555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 290 LVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
|...+...|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5666666777777777776666643
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.73 E-value=0.25 Score=40.53 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=85.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 228 (375)
...+...|++++|.+.|+.+.......|- ....-.+..++.+.|+++.|...++++.+.-+.-...-+-..+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 33445667777777777777653211111 12333556666777777777777777666533322222222222222211
Q ss_pred ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 229 DFDSVDRFYEEMMSLGII---PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
...... ....+.. --...+..++.-|-.+.-..+|...+..+.+. .- .---.+.+.|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHHH
Confidence 111110 0000000 00123444555555556666666655555331 01 111225667778888888888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
-++.+.+.-......-.....++.+|.+.|..+.|
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88877775433333323356677777777777644
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.48 Score=42.36 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCC---CCcCHhHHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCChh
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG---IKPDSAVFNSLICACLC---SGDVVTALSLFEIMVSSEEYKPNSK 180 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 180 (375)
+..+...++-+|....+++...++.+.+...- +.-+..+--...-++.+ .|+.++|++++..+.. ..-.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence 44444556666777778888888887777541 11122222233344455 6777888888777444 34456666
Q ss_pred cHHHHHHHH
Q 017234 181 TYDAFISGF 189 (375)
Q Consensus 181 ~~~~ll~~~ 189 (375)
+|..+...|
T Consensus 219 ~~gL~GRIy 227 (374)
T PF13281_consen 219 TLGLLGRIY 227 (374)
T ss_pred HHHHHHHHH
Confidence 666665554
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.016 Score=39.14 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 285 NMAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
.+++.+...|...|++++|+..|++..+. |........++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666654422 11111112236666666666677777666666554
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.59 E-value=0.019 Score=38.10 Aligned_cols=53 Identities=2% Similarity=0.003 Sum_probs=22.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
|.+.+++++|.++++.+...++. +...+.....++...|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444443322 333444444444444444444444444443
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.55 E-value=0.28 Score=38.80 Aligned_cols=128 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHH
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYE 218 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~ 218 (375)
.|+...--.|..++.+.|+..+|...|++... .-+.-|....-.+.++....+++..|...++++-+.... .++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45555555566666666666666666666654 334445555555556666666666666666655544210 0222334
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
.+...+...|.+++|+.-|+..... -|+...-......+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455556666666666666665554 2333322222233444554444443
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.49 E-value=0.11 Score=46.04 Aligned_cols=300 Identities=13% Similarity=0.044 Sum_probs=162.7
Q ss_pred CCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHH--H--
Q 017234 68 NSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSME--A-- 136 (375)
Q Consensus 68 ~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~--~-- 136 (375)
..+...+..-+.. |+.|+....+.+ |+...+-|..| ..+|+.|-++|.-.+++++|++....=. .
T Consensus 12 ~q~~SCleLalEGERLck~gdcraGv~f----f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~ 87 (639)
T KOG1130|consen 12 MQDRSCLELALEGERLCKMGDCRAGVDF----FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL 87 (639)
T ss_pred hhhhHHHHHHHHHHHHHhccchhhhHHH----HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH
Confidence 3344455555555 677888888877 44555555444 3345556666666677777776653211 1
Q ss_pred CCCC-cCHhHHHHHHHHHHcCCChHHHHHHHHH----HHhCCCCCCChhcHHHHHHHHHcCCC-----------------
Q 017234 137 QGIK-PDSAVFNSLICACLCSGDVVTALSLFEI----MVSSEEYKPNSKTYDAFISGFSSLGN----------------- 194 (375)
Q Consensus 137 ~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~~ll~~~~~~~~----------------- 194 (375)
.|-+ -...+...|...+--.|.+++|+-.-.+ .++...-......+-.+.+.|...|+
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 0100 0122233344444445556555432221 11100001112233344445544332
Q ss_pred ---HHHHHHHHHHHH----HCCCC-cCHHhHHHHHHHHHccCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHh
Q 017234 195 ---VDAMNKWYAANI----AAGFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMM----SLGII-PSIPILEKVLEGLCA 261 (375)
Q Consensus 195 ---~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~ 261 (375)
++.|.++|.+-. +.|-. .--..|..|-+.|--.|+++.|...-+.=. +-|-+ .....++.+.+++.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 123344443221 11100 123456677777777888998876554322 22211 223567888888889
Q ss_pred cCCHHHHHHHHHHHH----hCC-CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----C-CCCCchHHHHHHHHHHHH
Q 017234 262 RRKLDRVKSFLKFLL----GGG-WKINENMAQKLVKCYCELGRVDELEEQLETLTK----C-NQSPEVLLHFFSGIIRLY 331 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~~~li~~~ 331 (375)
.|+++.|.+.|+... +.| -........+|.+.|.-..++++|+..+.+-.. . +..-.... +-+|..+|
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra--cwSLgna~ 325 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA--CWSLGNAF 325 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHH
Confidence 999999999888753 222 123455667788888888888988887765321 1 12222333 77889999
Q ss_pred HhhCCHHHHHHHHHHHHhCCCCccCch----hHHHHHHHHHHhhcc
Q 017234 332 ALSDRLDDVEYSVGRMGKQGLSFKSAE----DVEMESWFIWKVGFR 373 (375)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~~~~~~~~~~~~~ 373 (375)
...|..++|..+.+.-++...+.+++. ...-++-+.+.-|..
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 999999999988877766544444443 222355555554443
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.2 Score=42.69 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=78.5
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCcCHHh
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL---GNVDAMNKWYAANIAAGFSVNVQT 216 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~ 216 (375)
+-|...|-.|...|...|+++.|..-|....+.. .++...+..+..++... ....++.++|+++...... |+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 4578889999999999999999999999888744 34445555555554333 2356888899998887654 7888
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCC
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 244 (375)
...|...+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888888899999999999999998875
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.026 Score=37.44 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.|.+.+++++|.+.++.+...+ |+.... |......+.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~-~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPEL-WLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchh-hHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555555666666665555533 222111 444555555556666666666555543
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.29 E-value=0.37 Score=37.40 Aligned_cols=87 Identities=6% Similarity=0.027 Sum_probs=53.8
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 303 (375)
+-..|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+ .-|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 445677777777777776654 2233344555555566677777777777665443 23444445556677777777777
Q ss_pred HHHHHHHHh
Q 017234 304 EEQLETLTK 312 (375)
Q Consensus 304 ~~~~~~~~~ 312 (375)
+..|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766665
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.24 E-value=0.049 Score=45.77 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=58.2
Q ss_pred CcCHhHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCH----------------HHH
Q 017234 140 KPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV----------------DAM 198 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~----------------~~a 198 (375)
+.|-.+|-..+..+... ++++-....++.|.+ .|+..|..+|+.||+.+-+..-. +-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 45777777777777643 566777777788888 88888888888888876553221 224
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
.+++++|...|+.||-.+-..|++++.+.+-
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 5555666666666666666666665555544
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.21 E-value=0.15 Score=46.98 Aligned_cols=129 Identities=7% Similarity=0.032 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (375)
.+.++.-+-+.|..+.|+++-.+ + ..-.+...+.|+++.|.++.++ .++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 44555555555555555554322 1 1123333455555555543322 1244455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
.|+++.|++.+++..+ +..|+-.|...|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHT-HHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--------HHHHHHHHHHcCCHHHHH
Confidence 5555555555554321 34444455555555555555554444331 344444444555555555
Q ss_pred HHHH
Q 017234 342 YSVG 345 (375)
Q Consensus 342 ~~~~ 345 (375)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.17 E-value=0.1 Score=43.87 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC----------------ChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----------------DVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+.++-....+..|.+.|+..|..+|+.||..+-+.. +-+=+++++++|.. .|+.||..+-..+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDIL 164 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHH
Confidence 344444445555556666666666666655554321 22346777888877 7788888888888
Q ss_pred HHHHHcCCCH-HHHHHHHHHHH
Q 017234 186 ISGFSSLGNV-DAMNKWYAANI 206 (375)
Q Consensus 186 l~~~~~~~~~-~~a~~~~~~m~ 206 (375)
++++.+.+.. .+..++.-.|.
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhccccccHHHHHHHHHhhh
Confidence 8888777653 33444444443
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.91 Score=40.57 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=86.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH--HHccCChHHHHHHHHHHHHCCCCCCHHH-------------
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG--SLKARDFDSVDRFYEEMMSLGIIPSIPI------------- 251 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------- 251 (375)
.++.-.|+.++|.++-....+... ...+...+++ +-..++.+.|...|.+-...+ |+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 344556677777666655555321 1223333333 334566666776666665543 33221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGG---GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 328 (375)
+..=.+-..+.|++..|.+.|.+.+.. ..+|+...|........+.|+.++|..--++..+ +.+.-.-. |-.-.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syika-ll~ra 328 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKA-LLRRA 328 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHH-HHHHH
Confidence 111122334667777777777777653 3455666677777777777777777777766655 32321111 33334
Q ss_pred HHHHhhCCHHHHHHHHHHHHhC
Q 017234 329 RLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.++...++|++|++-|++..+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455567777777777766554
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.037 Score=37.27 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGG----GW-KIN-ENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
.+|+.+...|...|++++|...+++..+. |- .|+ ..++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666555432 10 111 3345555666666666666666665543
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.98 E-value=0.45 Score=42.95 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI-LEKVLEGL 259 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~ 259 (375)
|...++.-.+..-++.|..+|-++.+.| +.+++..++++|..++. |+..-|.++|+--... .||... ....+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 3444444444444555555555555554 34445555555554432 4444555555443332 223222 22233333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
...++-+.|..+|+...+. +.-+ ...|..+|..-...|++..+..+-+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4455555555555533221 1111 23455555554555555544444444433
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.97 E-value=0.46 Score=43.95 Aligned_cols=154 Identities=11% Similarity=0.127 Sum_probs=75.5
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHH
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 161 (375)
.+++++++.+.++ -.++. ..+| ..-.+.++..+-+.|-.+.|+++-..-. .-.+...+.|+++.
T Consensus 273 ~~~d~~~v~~~i~--~~~ll-~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 273 LRGDFEEVLRMIA--ASNLL-PNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HTT-HHH-----H--HHHTG-GG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HcCChhhhhhhhh--hhhhc-ccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 6666666655531 11221 1123 4446666666666676666666543211 12344456666666
Q ss_pred HHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 162 a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+...
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66553322 3455666666666666666666666655432 4555555666666666555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
..|- ++....++.-.|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5442 4444445555566665555543
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=95.95 E-value=0.3 Score=37.95 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=63.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
..-+...|++++|..+|.-+...++. +..-|..|..++...+++++|...|...-..+. -|...+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33456778888888888887776554 566667777777778888888888876655432 2333344566777888888
Q ss_pred HHHHHHHHHHHh
Q 017234 266 DRVKSFLKFLLG 277 (375)
Q Consensus 266 ~~a~~~~~~~~~ 277 (375)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.95 E-value=0.59 Score=36.64 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 017234 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 208 (375)
+.++.+.+.|++|+...+..+++.+.+.|++.....+ .. .++-+|+......+-.+... ...+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq-~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQ-YHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----Hh-hcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH
Confidence 4455566778888888888888888888876554444 33 55566665555544333332 22333333333332
Q ss_pred CCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
=...+..+++.+...|++-+|.++.+.....+ ......++.+..+.+|...-..+++-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00136667777888888888888777653221 112345666666667666666666655543
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.2 Score=44.39 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
.++..+.-++.+.+++..|.+.-...++.+ ++|....-.=..+|...|+++.|+..|+.+.+ +.|+.... -+.|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~-~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAA-RAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHH-HHHHHH
Confidence 457778888889999999988888888876 66777777778888899999999999999988 45665553 344554
Q ss_pred HHHhhCCH-HHHHHHHHHHHhC
Q 017234 330 LYALSDRL-DDVEYSVGRMGKQ 350 (375)
Q Consensus 330 ~~~~~g~~-~~A~~~~~~m~~~ 350 (375)
.--+.... +...++|..|...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444 3446788888654
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.92 E-value=0.47 Score=35.25 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
...+......|+-++..+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444455555555555555554432 44555555555555555555555555555555443
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.92 E-value=1.3 Score=40.21 Aligned_cols=135 Identities=10% Similarity=0.113 Sum_probs=104.2
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 291 (375)
=..+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++..++ .|+...|..+|+--... +..++.-.+-.+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 45678888998888889999999999999988 6788899999998776 67788899999765543 333344456677
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+...++-+.|..+|+...++ +..+....+|..+|.-=..-|+...+..+=++|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 8888999999999999965443 111111223899999888899999999888888764
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.89 E-value=0.41 Score=36.48 Aligned_cols=86 Identities=10% Similarity=-0.038 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (375)
...++..+...+.......+++.+...+. .+...++.++..|++.+ .++..+.++. .++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44566666666777777777777776653 46667777777777653 2333333331 1222334446666666
Q ss_pred cCCHHHHHHHHHHH
Q 017234 262 RRKLDRVKSFLKFL 275 (375)
Q Consensus 262 ~g~~~~a~~~~~~~ 275 (375)
.+.++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666666554
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.86 E-value=1.1 Score=39.04 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc--CC----ChHHHHHHHHHHHhCCCC--CCChhcHHHHHHHHHcCCC--
Q 017234 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLC--SG----DVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGN-- 194 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~--~~~~~~~~~ll~~~~~~~~-- 194 (375)
++...+++.|.+.|+.-+..+|-+..-.... .. ...+|.++|+.|++...+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455566666666666666555553333222 11 245666777777663222 2333444444433 2233
Q ss_pred --HHHHHHHHHHHHHCCCCcCH--HhHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017234 195 --VDAMNKWYAANIAAGFSVNV--QTYESLIHGSLKARD--FDSVDRFYEEMMSLGIIPSIPILEKVL 256 (375)
Q Consensus 195 --~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (375)
.+.++.+|+.+.+.|+..+- .....++..+....+ ...+.++++.+++.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 24455666666665554422 222222222222111 335666666677666666665555443
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=1.9 Score=41.61 Aligned_cols=292 Identities=10% Similarity=0.059 Sum_probs=159.6
Q ss_pred chHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcC--ChHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 017234 39 SSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSS--SPKKAQLVLEWRLDKMLKGNESCLDEYACL 114 (375)
Q Consensus 39 ~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~--~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l 114 (375)
.-..+|..+...+.. .+.++-..+...-..- ...|...... .++. .-+++++-+ -+++ +....+..+|..+
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I---~~kl-s~~~~~~iSy~~i 513 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKI---DEKL-SAKLTPGISYAAI 513 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHH---HHHh-cccCCCceeHHHH
Confidence 445566777666655 3333333332111111 3344444444 3332 223444442 2222 2223456678888
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCC----cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC----------CCCCChh
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIK----PDSAVFNSLICACLCSGDVVTALSLFEIMVSSE----------EYKPNSK 180 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~~~~~~~ 180 (375)
.......|+.+.|..+++.=...+-. .+..-+...+.-..++|+.+-...++-++..+. ..+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 88888999999999988753332211 133345666677778888888777777776520 0111111
Q ss_pred cHHHHHH--------HHHcCCCHHHHHHHHH--HHHHC-CCCcCHHhHHHHHHHHHccCChHH----------HHHHHHH
Q 017234 181 TYDAFIS--------GFSSLGNVDAMNKWYA--ANIAA-GFSVNVQTYESLIHGSLKARDFDS----------VDRFYEE 239 (375)
Q Consensus 181 ~~~~ll~--------~~~~~~~~~~a~~~~~--~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~----------a~~~~~~ 239 (375)
.|.-+++ .+.+.++...+...|. ..... -+.+-........+.+.+.....- -+++.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2222221 1111222222222111 10000 011112223333444544443111 1122222
Q ss_pred HHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc
Q 017234 240 MMS-LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318 (375)
Q Consensus 240 m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 318 (375)
+.. .|......+.+--+.-+...|+..+|.++-.+.. .||-..|..=+.+++..++|++-+++-+..+. |-
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----PI 745 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----PI 745 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----CC
Confidence 222 2334445566777778888999999999877664 58999999999999999999988887665542 32
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
- |.-.+.+|.+.|+.++|.+++.+.
T Consensus 746 G----y~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 746 G----YLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred C----chhHHHHHHhcccHHHHhhhhhcc
Confidence 1 777889999999999999998765
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.3 Score=44.37 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH----hHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356888888888888899999999999888876 4553 3588888888899999999998888887
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.77 E-value=0.62 Score=35.48 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=21.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
.++..+.+.+........++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444555555555555555444 23445555555555543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.68 E-value=1.6 Score=40.98 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCc-----CHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAG-FSV-----NVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPI 251 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~-----~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (375)
+..+++..+=.|+-+.+++.+.+..+.+ +.- -.-.|+..+..++. ..+.+.|.++++.+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4566777778899999999988866542 221 12345555555554 34678899999999986 577766
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHhCC--C-CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 252 LEKVL-EGLCARRKLDRVKSFLKFLLGGG--W-KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 252 ~~~li-~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
|...- ..+...|++++|.+.++...... . +.....+--+...+.-.++|++|...|..+.+..- .+...+.| ..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y-~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAY-LA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHH-HH
Confidence 65444 34567899999999999765421 1 22344566678888999999999999999987532 23333222 22
Q ss_pred HHHHHhhCCH-------HHHHHHHHHHHh
Q 017234 328 IRLYALSDRL-------DDVEYSVGRMGK 349 (375)
Q Consensus 328 i~~~~~~g~~-------~~A~~~~~~m~~ 349 (375)
..++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3345566777 888888877654
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.64 E-value=0.85 Score=42.73 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-----hcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHh
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-----KTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQT 216 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (375)
+..++....-.|+-+.+++.+.+..+..++.-.. ..|..++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4445555666788899998888877644443322 235555554444 34678899999999886 356555
Q ss_pred HHHH-HHHHHccCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-
Q 017234 217 YESL-IHGSLKARDFDSVDRFYEEMMSLG--I-IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV- 291 (375)
Q Consensus 217 ~~~l-l~~~~~~g~~~~a~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li- 291 (375)
|... .+.+...|++++|.+.|++..... . ......+--+...+.-.++|++|...+..+.+.. .-+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5443 345667899999999998765321 1 1223445566677788899999999999998754 23334444333
Q ss_pred HHHHHcCCh-------HHHHHHHHHHHh
Q 017234 292 KCYCELGRV-------DELEEQLETLTK 312 (375)
Q Consensus 292 ~~~~~~g~~-------~~a~~~~~~~~~ 312 (375)
.++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345567777 888888887643
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.60 E-value=1.6 Score=38.91 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=176.7
Q ss_pred cchHHHHHHhhcCCcchHHHHHHHh---hhccCCCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCCHHHH
Q 017234 38 SSSNPLISRLLQVPVSQIKTTLDSV---DIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~~~~~~~~~m---~~~~~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~ 111 (375)
.-|..|-.+++..+..++ .+-..| .+.-+..|....-.++.+ ...|+.+.|.+- |+.|.....--.--.
T Consensus 83 rgyqALStGliAagAGda-~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~k----feAMl~dPEtRllGL 157 (531)
T COG3898 83 RGYQALSTGLIAAGAGDA-SLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKK----FEAMLDDPETRLLGL 157 (531)
T ss_pred hHHHHHhhhhhhhccCch-HHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHH----HHHHhcChHHHHHhH
Confidence 457777777777664422 122223 222356666666677776 488899999888 566653222222223
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcH--HHHHHHH
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY--DAFISGF 189 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~ll~~~ 189 (375)
..|.-.--+.|+.+.|...-+..-+.- +--...+...+...+..|+|+.|+++.+.-++..-+.++..-- ..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 344444456788888877777665542 2235678888899999999999999998877644455554321 1233221
Q ss_pred H---cCCCHHHHHHHHHHHHHCCCCcCHHh-HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 190 S---SLGNVDAMNKWYAANIAAGFSVNVQT-YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 190 ~---~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
. -..+...|...-.+..+ +.||..- --.-..++.+.|+..++-.+++.+-+....|+. . .+..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC-
Confidence 1 11234445544444333 4455332 223356788899999999999999887555542 2 2233445664
Q ss_pred HHHHHHHHHHHhC-CCCc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh-CCHHHHHH
Q 017234 266 DRVKSFLKFLLGG-GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEY 342 (375)
Q Consensus 266 ~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~ 342 (375)
.+..-+++.... .++| +....-.+..+-...|++..|..--+.... ..|.... |-.|.+.-... |+-.++..
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~--~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA--YLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH--HHHHHHHHhhccCchHHHHH
Confidence 333333333221 2344 445566677888888998888776666655 4465555 65555554443 88888888
Q ss_pred HHHHHHhC
Q 017234 343 SVGRMGKQ 350 (375)
Q Consensus 343 ~~~~m~~~ 350 (375)
.+-+..+.
T Consensus 385 wlAqav~A 392 (531)
T COG3898 385 WLAQAVKA 392 (531)
T ss_pred HHHHHhcC
Confidence 88777654
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.58 E-value=0.11 Score=46.97 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH
Q 017234 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 321 (375)
+.+...++.+..+|.+.|++++|...+++.++. .|+. .+|..+..+|...|+.++|...+++..+.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 345688999999999999999999999998885 4553 358999999999999999999999998852 12 1
Q ss_pred HHHHHHHH--HHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 322 HFFSGIIR--LYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 322 ~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
|..+.. .+....+..+..++++.+.+-|...
T Consensus 146 --f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 146 --FSTILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred --HHHHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 332111 1112233457777888888877643
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.45 E-value=0.91 Score=43.34 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHH-----
Q 017234 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH----- 322 (375)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----- 322 (375)
+....-.+...+.+.|.-++|.+.+-+. + .|- .-+..|...++|.+|.++-+...-..+..-....
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3444556666777777777766655322 1 121 2344556666666666665543211110000000
Q ss_pred ---HHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 323 ---FFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 323 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
-.---|..+.+.|+.-+|-+++.+|.++
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 0122355677778877788888777654
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.59 Score=40.57 Aligned_cols=152 Identities=8% Similarity=-0.043 Sum_probs=87.3
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHH----HHHHHHHcCCCH
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD----AFISGFSSLGNV 195 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~ll~~~~~~~~~ 195 (375)
-.|+..+|-..++++.+. .+.|...++-.=+++.-.|+.+.-...+++.... ..||...|. .+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 446666666677776654 3556666776677777777777777777766642 234443332 233344566777
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017234 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII---PSIPILEKVLEGLCARRKLDRVKSFL 272 (375)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (375)
++|++.-++..+.+.. |.-+-.++...+--.|+..++.++..+-...=-. .-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777776665533 5666666666667777777777665554332100 00111212222334556777777777
Q ss_pred HHH
Q 017234 273 KFL 275 (375)
Q Consensus 273 ~~~ 275 (375)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.36 E-value=0.35 Score=40.72 Aligned_cols=90 Identities=7% Similarity=-0.051 Sum_probs=39.4
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHH
Q 017234 261 ARRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (375)
+.|++..|...|...++.. -.-....+-.|..++...|++++|..+|..+.+.-.+........--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555554432 01112233445555555555555555555544332211111111333444455555555
Q ss_pred HHHHHHHHHHhC
Q 017234 339 DVEYSVGRMGKQ 350 (375)
Q Consensus 339 ~A~~~~~~m~~~ 350 (375)
+|..+|++..++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=1.7 Score=37.24 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=121.8
Q ss_pred CCCcccHHH--HHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhH
Q 017234 68 NSSQFSWDA--LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145 (375)
Q Consensus 68 ~p~~~~~~~--li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 145 (375)
-|+++.|.- -+..+....++..++-| +++.... +....+ .-.......|++.+|..+|.......-. +...
T Consensus 98 IPtV~af~dGqpVdgF~G~qPesqlr~~---ld~~~~~--~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~ 170 (304)
T COG3118 98 IPTVYAFKDGQPVDGFQGAQPESQLRQF---LDKVLPA--EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEA 170 (304)
T ss_pred CCeEEEeeCCcCccccCCCCcHHHHHHH---HHHhcCh--HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchH
Confidence 366665532 33446777788777665 5555432 233333 3344566889999999999988876422 4667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGS 224 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~ 224 (375)
--.+..+|...|+.+.|..++..+..+ --.........-|..+.+.....+...+-.+.-. .| |...--.+...+
T Consensus 171 ~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~ 246 (304)
T COG3118 171 KLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQL 246 (304)
T ss_pred HHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 778889999999999999999988762 1111122222334444555554444444444444 24 777777888889
Q ss_pred HccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017234 225 LKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARRKLDRVKSFL 272 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (375)
...|+.++|.+.+-.+.+.+. .-|...-..++..+.-.|..+.+...+
T Consensus 247 ~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 247 HLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999887777665421 345566677777777666444443333
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.23 E-value=0.97 Score=34.28 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 259 LCARRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
..+.|++++|.+.|+.+...- -+-...+--.|+.+|.+.|++++|...+++.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334555555555555554431 01122334445555555555555555555555543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.59 Score=39.40 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh---cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--cCHHhHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK---TYDAFISGFSSLGNVDAMNKWYAANIAAGFS--VNVQTYES 219 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ 219 (375)
.|+.-+..+ ++|++.+|..-|....+ +.+-+.. .+--|..++...|++++|-.+|..+.+.-.+ .-+.++--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555433 55556666666666665 2222222 2334566666666666666666666554221 12344555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
|..+..+.|+.++|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555566666666666666666554
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.98 E-value=2.3 Score=37.15 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhCCCCcCHHH
Q 017234 267 RVKSFLKFLLGGGWKINENM 286 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~ 286 (375)
++..+++.+.+.|+++....
T Consensus 200 r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred HHHHHHHHHHHcCCcccccc
Confidence 44444444444444444443
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.95 E-value=2.5 Score=37.63 Aligned_cols=247 Identities=11% Similarity=0.006 Sum_probs=161.8
Q ss_pred chHHHHHHHhhhccCCCCcccHH---HHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017234 53 SQIKTTLDSVDIFAFNSSQFSWD---ALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129 (375)
Q Consensus 53 ~~~~~~~~~m~~~~~~p~~~~~~---~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 129 (375)
..+.+-|+.|.. .|...... .+|.+-+.|..+.|...-+ .-...-+.-...+...+...+..|+++.|++
T Consensus 137 ~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe----~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 137 EDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAE----RAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHH----HHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 377999999973 34433322 2333357888888888743 3333334456788899999999999999999
Q ss_pred HHHHHHHCC-CCcCHh--HHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCChhcHH-HHHHHHHcCCCHHHHHHHH
Q 017234 130 VFTSMEAQG-IKPDSA--VFNSLICACLC---SGDVVTALSLFEIMVSSEEYKPNSKTYD-AFISGFSSLGNVDAMNKWY 202 (375)
Q Consensus 130 ~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~ 202 (375)
+.+.-++.. +.++.. .-..|+.+-.. ..+...|...-.+..+ +.||..--. .-..++.+.|+..++-.++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 999876543 344433 22333433222 2356666666555544 467654333 3457789999999999999
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017234 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (375)
Q Consensus 203 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 280 (375)
+.+-+..+.|+. +. +..+.+.|+. +..-++..+.. .++| +...-..+..+....|++..|..--+.... .
T Consensus 287 E~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 287 ETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 999998766654 22 2334455553 33333333221 2234 456677788888899999998887766655 4
Q ss_pred CcCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCC
Q 017234 281 KINENMAQKLVKCYCE-LGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 281 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~ 317 (375)
.|....|..|.+.-.. .||-.++...+-+..+....|
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 6888889888877554 499999999998877654333
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.86 E-value=3.2 Score=38.31 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHH
Q 017234 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 153 (375)
+..+-.+.+..++.+-++.- .+...-.+.....|..|. --.+..+.+|++++++..+.|- ..+
T Consensus 172 q~IMq~AWRERnp~aRIkaA----~eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~l------- 234 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAA----KEALEINPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASL------- 234 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHH----HHHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhh-------
Confidence 44444446777777666663 222222222233332222 2234567888888888776531 111
Q ss_pred HcCCChHHH-HHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHccCChH
Q 017234 154 LCSGDVVTA-LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDFD 231 (375)
Q Consensus 154 ~~~g~~~~a-~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~ 231 (375)
+.....+. -..++.... ....|-..+-..+..++-+.|+.++|.+.|.+|.+.... -+......|+.++...+.+.
T Consensus 235 -g~s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 235 -GKSQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred -chhhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 11000000 011122222 222233333445666777889999999999998765322 24557788899999999999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 017234 232 SVDRFYEEMMSLGIIPS--IPILEKVLEGLC 260 (375)
Q Consensus 232 ~a~~~~~~m~~~~~~p~--~~~~~~li~~~~ 260 (375)
++..++.+-.+... |. ..+|+..+-.+.
T Consensus 313 d~q~lL~kYdDi~l-pkSAti~YTaALLkaR 342 (539)
T PF04184_consen 313 DVQALLAKYDDISL-PKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhccccC-CchHHHHHHHHHHHHH
Confidence 99998888654332 33 356666554433
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=2.2 Score=36.49 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=73.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
.....|+..+|...|+...+.... +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566677777777766665433 3445556666777777777777777666443211111222222333334444444
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCC
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (375)
...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+..++..-..... -..++..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~-Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA-RKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH-HHHHHHHHHhcCC
Confidence 44444443332 225555566666677777777776666555444322211111 3445555555553
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.72 E-value=2.2 Score=35.78 Aligned_cols=190 Identities=13% Similarity=0.151 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
..|+.-+. -.+.|++++|.+.|+.+..+....| ...+.-.++-++.+.+++++|...+++.....+.....-|-.-|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444443 3467888888888888876433222 223444566677788888888888888776644433344555555
Q ss_pred HHHcc-------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 017234 223 GSLKA-------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (375)
Q Consensus 223 ~~~~~-------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 295 (375)
+++.. .|...+.+-|..+.+ ++.-|=.+.-...|..-+..+... . ..-=-.+.+.|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~ 178 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYL 178 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHH
Confidence 55422 233333333333321 111111222222222222222110 0 000112456677
Q ss_pred HcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+.|.+..|..-+++|.+.-......-...-.+..+|...|-.++|.+.-.-+...
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 7777777777777777653222222222555667777777777777766555443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.72 E-value=3.5 Score=38.08 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGG-WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
..+-..+..++-+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+-. -|...+..|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHH
Confidence 3333445556667777777777777776432 11234456667777777777777777777664321 233344336655
Q ss_pred HHHH
Q 017234 328 IRLY 331 (375)
Q Consensus 328 i~~~ 331 (375)
+-.+
T Consensus 338 LLka 341 (539)
T PF04184_consen 338 LLKA 341 (539)
T ss_pred HHHH
Confidence 5433
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.48 E-value=0.51 Score=40.34 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=55.3
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 017234 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPILEK 254 (375)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 254 (375)
.++..++..+...|+.+.+.+.++++....+. +...|..++.+|.+.|+...|++.|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35666777777777888888888887777654 777788888888888888888877777765 366666555554
Q ss_pred HHHH
Q 017234 255 VLEG 258 (375)
Q Consensus 255 li~~ 258 (375)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.44 E-value=1.5 Score=33.28 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 226 (375)
..+.|++++|.+.|+.+..+....|- ..+--.++.+|.+.+++++|...+++..+.++.---.-|-..+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34566677777776666653222221 123335566666677777777777666665543333344444444443
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=1.3 Score=39.55 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=73.0
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 293 (375)
..+++.+.-+|.+.+++.+|++.-+..++.+ ++|.-..-.=..+|...|+++.|+..|+.+++.. +-|-.+-+.|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567888889999999999999999988877 6777777778889999999999999999998853 3344445556665
Q ss_pred HHHcCChHH-HHHHHHHHHh
Q 017234 294 YCELGRVDE-LEEQLETLTK 312 (375)
Q Consensus 294 ~~~~g~~~~-a~~~~~~~~~ 312 (375)
-.+.....+ ..++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 555555444 3667777654
No 248
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.32 E-value=4 Score=38.89 Aligned_cols=218 Identities=8% Similarity=0.009 Sum_probs=117.7
Q ss_pred chHHHHHHhhcCCcchH---HHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC-----CCHH
Q 017234 39 SSNPLISRLLQVPVSQI---KTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-----SCLD 109 (375)
Q Consensus 39 ~~~~ll~~l~~~~~~~~---~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-----~~~~ 109 (375)
.++..=.++.+-++.+. ..-+++|+++|-.|+.... ... +-+|.+.+|.++| .+.-..+. .|..
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklF----k~~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLF----KRSGHENRALEMYTDLR 672 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHH----HHcCchhhHHHHHHHHH
Confidence 34444455555555433 3445666778888876432 122 4778888888884 32211110 1122
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHH------HHhCCCC---CCChh
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI------MVSSEEY---KPNSK 180 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~~---~~~~~ 180 (375)
.|. ...-+...|+.++-..+.++-.+. ..+..--.+....+...|+.++|..+.-+ +.+ -+- ..+..
T Consensus 673 MFD-~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lid-I~rkld~~ere 748 (1081)
T KOG1538|consen 673 MFD-YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLID-IARKLDKAERE 748 (1081)
T ss_pred HHH-HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHH-HHhhcchhhhh
Confidence 121 223344444444443333322211 11111112233444556666666554311 111 111 23344
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----------
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP---------- 250 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------- 250 (375)
+...+...+.+...+..|-++|..|-+ ...++......++|.+|..+-+...+- .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555566677778888888887754 245677888999999999988776553 34432
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 251 -ILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 251 -~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
-|...-++|-+.|+-.+|.++++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444456777888888888888887544
No 249
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.26 E-value=2.5 Score=34.52 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+.+||-+.--+...|+++.|.+.|+...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 34555555555555666666666555554
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=3.2 Score=36.26 Aligned_cols=157 Identities=9% Similarity=-0.013 Sum_probs=112.2
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCcCHHhHHHHHHHHHccCC
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA---GFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~ 229 (375)
..-.|++.+|-..++++.+ ..+.|...++-.=.+|.-.|+.+.-...+++.... +++.....-....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3467888888888888886 46778888888889999999999888888887654 222223333344445567899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHcCChHHHHHH
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG---GWKINENMAQKLVKCYCELGRVDELEEQ 306 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~ 306 (375)
+++|++.-++..+-+ +.|...-.++...+-..|++.++.+++.+-... +.-.-..-|-...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999888888766 567777778888888889999999887765432 1111122344455566777899999999
Q ss_pred HHHHHh
Q 017234 307 LETLTK 312 (375)
Q Consensus 307 ~~~~~~ 312 (375)
|+.=.-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 976443
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=2.2 Score=33.48 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV-QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP-ILEK 254 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ 254 (375)
.+...|..-++ ..+.+..++|+.-|.++.+.|...=+ -.-.-........|+...|...|++.-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 44556666655 35667888899999988887654211 112223345667888899999999887765445432 2222
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 017234 255 VLE--GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330 (375)
Q Consensus 255 li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (375)
|=. .+...|-++.+..-.+.+-..+-+.-...-..|--+-.+.|++.+|.+.|+.+......|......-+.+++.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~mldl 213 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHHHH
Confidence 322 3457788888888777776655444455566777777788999999999988887666665544333444443
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.14 E-value=2.6 Score=34.25 Aligned_cols=64 Identities=14% Similarity=-0.003 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHC-CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444555555555555555444431 1122333444444444444445555555554443
No 253
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.08 E-value=3.2 Score=35.07 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHCCCCcCHh---HHHHHHHHHHcCCChHHHHHHHHHHH
Q 017234 123 NVPFAMHVFTSMEAQGIKPDSA---VFNSLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
.+++|+.-|.+..+..-..... ..-.+|....+.|++++....|.++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4555555555554432111111 22334455555555555555555543
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=6.2 Score=38.05 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC-CCCc--------CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKP--------DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 175 (375)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=+. +--|++++|.++|-+|.+ .
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~dr-r-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADR-R-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccch-h--
Confidence 477778888887777777777777777554432 2221 1111111122 224889999999988876 1
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC----HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 017234 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (375)
...+..+.+.|+|-.+.++++ ..|-..| ...|+.+...+.....|++|.+.|..-..
T Consensus 764 -------DLAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 245667778888877666653 2222222 46788899999999999999988865432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (375)
-...+.++.+..++++.+.+...+ +-|....-.+.+++.+.|.-++|.+.+-+-. .| .+.+++|
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-------kaAv~tC 888 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-------KAAVHTC 888 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-------HHHHHHH
Confidence 124566777777777666555443 3344555566677777777777766653321 12 2235556
Q ss_pred HhhCCHHHHHHHHHHH
Q 017234 332 ALSDRLDDVEYSVGRM 347 (375)
Q Consensus 332 ~~~g~~~~A~~~~~~m 347 (375)
....+|.+|.++-++.
T Consensus 889 v~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666666666655443
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.88 E-value=2 Score=32.03 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=69.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++.+-+ -.|.. ..|++..+..
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHH
Confidence 346666666666666553 2444455555544444444444444444432 12211 1222333222
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.+..+ | .+......-+..+...|+-+.-.++..++.+.+ .++... .-.+..+|.+.|+..++.+++++..++
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~--L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEF--LVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHH--HHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHH--HHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22211 1 133445555677777888888888888776422 233333 456778888888888888888888888
Q ss_pred CCC
Q 017234 351 GLS 353 (375)
Q Consensus 351 ~~~ 353 (375)
|+.
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.87 E-value=4.6 Score=38.85 Aligned_cols=184 Identities=14% Similarity=0.164 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHH-HHcCCCHHHHHHHHHHHHH-------CCCCcCHHhHHHHHHHHHccC--
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAMNKWYAANIA-------AGFSVNVQTYESLIHGSLKAR-- 228 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~g-- 228 (375)
...|.++++...+...+.+-...=.....+ +....+.+.|+.+|+...+ .| +.....-+..+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 467888888887732211111111222333 4566789999999988766 44 3345666667776643
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH----HcCCh
Q 017234 229 ---DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC----ELGRV 300 (375)
Q Consensus 229 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~ 300 (375)
+.+.|..+|...-+.| .|+....-..+.-... ..+...|.++|....+.|.. +.. -.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~--~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAI--YRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHH--HHHHHHHHhCCCcCCCH
Confidence 6677999998888888 4665544444333333 35678999999999888832 222 22333322 34467
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
+.|...+++..+.|....... -..+..+.. ++++.+.-.+..+.+.|..
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~---~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYL---LGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHccChhhHHH---HHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 788899988888873221222 222333344 7777777777777776654
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.84 E-value=4 Score=35.33 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=66.4
Q ss_pred hccCChhHHHHHHHHHHHCC--CCcCHh------HHHHHHHHHHcCC-ChHHHHHHHHHHHhC----C---CCCCCh---
Q 017234 119 GKVQNVPFAMHVFTSMEAQG--IKPDSA------VFNSLICACLCSG-DVVTALSLFEIMVSS----E---EYKPNS--- 179 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~m~~~----~---~~~~~~--- 179 (375)
.+.|+.+.|..++.+..... ..|+.. .||.-... .+.+ +++.|..++++..+- . ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46778888888887776532 233321 23333333 3344 777777777766552 0 111221
Q ss_pred --hcHHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 180 --KTYDAFISGFSSLGNVD---AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 180 --~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
.++..++.+|...+..+ +|.++++.+...... .+.++-.-+..+.+.++.+++.+++.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23455666666666543 445555555443322 2444445556666667777777777777665
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.82 E-value=4 Score=35.30 Aligned_cols=164 Identities=10% Similarity=0.026 Sum_probs=95.3
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHhccC-ChhHHHHHHHHHHHC--------CCCcC---
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESC------LDEYACLIALSGKVQ-NVPFAMHVFTSMEAQ--------GIKPD--- 142 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~------~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~--- 142 (375)
.++|+.+.|...+.++ +.+.....|+ ...|+.-...+ +.+ +++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~-~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKA-KDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHh-hhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 4778888888885432 2222122232 22333333333 445 777777666654432 12233
Q ss_pred --HhHHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 017234 143 --SAVFNSLICACLCSGDV---VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217 (375)
Q Consensus 143 --~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (375)
..++..++.+|...+.. ++|..+++.+....+ -...++-.-+..+.+.++.+.+.+++.+|...-. -....+
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~--~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~ 158 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG--NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchH
Confidence 24677788888887764 456777777766332 2244555666777778999999999999988632 134455
Q ss_pred HHHHHHHHcc--CChHHHHHHHHHHHHCCCCCCH
Q 017234 218 ESLIHGSLKA--RDFDSVDRFYEEMMSLGIIPSI 249 (375)
Q Consensus 218 ~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~p~~ 249 (375)
..++..+... .....|...++.+....+.|..
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5555555222 2345666666666655445544
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.79 E-value=0.27 Score=28.82 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=8.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~ 207 (375)
...|.+.|++++|.++|++..+
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 260
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.74 E-value=2.9 Score=35.80 Aligned_cols=148 Identities=10% Similarity=0.142 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc-CC-CHHHHHHHHHHHHHC-CCCcCHHhHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS-LG-NVDAMNKWYAANIAA-GFSVNVQTYESLIH 222 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~ 222 (375)
|..++. ++.-+.+|+++|+....++.+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...+++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 4455677778887544323455677777777766655 22 233334444444432 34567777788888
Q ss_pred HHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCcCHHHHHHHHHHHHH
Q 017234 223 GSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKF-----LLGGGWKINENMAQKLVKCYCE 296 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~~ 296 (375)
.++..++|..-.++++.-... +..-|..-|..+|..-...|+..-...+..+ +.+.|+..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888888888888888776654 4455667788888888888888777777765 2445666666666666555543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.62 E-value=2.2 Score=31.77 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHHHcCC
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM---AQKLVKCYCELGR 299 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 299 (375)
++...|+.+.|++.|.+....- +-....||.-.+++.-.|+.++|.+=+.+..+..-.-.... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556667777777666665432 23456677777777667777777666666655421112221 2222234555666
Q ss_pred hHHHHHHHHHHHhCCC
Q 017234 300 VDELEEQLETLTKCNQ 315 (375)
Q Consensus 300 ~~~a~~~~~~~~~~~~ 315 (375)
.+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666666553
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.61 E-value=0.49 Score=42.17 Aligned_cols=231 Identities=15% Similarity=0.083 Sum_probs=136.3
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCH----hHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCC-CChhcHHHHHH
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEYK-PNSKTYDAFIS 187 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~-~~~~~~~~ll~ 187 (375)
.-+|+.|+......+|+...+.|.. |. .+|.-|..+|.-.+++++|+++...=... -|-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998844 43 45667777888888999998875421110 0000 01111222333
Q ss_pred HHHcCCCHHHHHHHHHH----HHHCCCC-cCHHhHHHHHHHHHccCC--------------------hHHHHHHHHHH--
Q 017234 188 GFSSLGNVDAMNKWYAA----NIAAGFS-VNVQTYESLIHGSLKARD--------------------FDSVDRFYEEM-- 240 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~----m~~~~~~-~~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~m-- 240 (375)
.+--.|.+++|.-.-.+ ..+.|-. .-...+..+.+.|...|+ ++.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33444555555433221 1122111 123445556666665542 33344444332
Q ss_pred --HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-cCHHHHHHHHHHHHHcCChHHHHHHHHHHH-
Q 017234 241 --MSLGI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLL----GGGWK-INENMAQKLVKCYCELGRVDELEEQLETLT- 311 (375)
Q Consensus 241 --~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 311 (375)
.+.|- ..-...|..|-+.|.-.|+++.|....+.=+ +-|-. .....+..|.+++.-.|+++.|.+.++...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 22221 1122457777778888899999998876532 22311 234568889999999999999998887643
Q ss_pred ---hCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 312 ---KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 312 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
+.|-..... ...-+|..+|.-...+++|+.++.+-.
T Consensus 264 LAielg~r~vEA-QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 264 LAIELGNRTVEA-QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhcchhHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 222222111 125567888888888999999887654
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.55 E-value=3.9 Score=34.32 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=28.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLG--IIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
.+.|.+.|.+..|..-+++|.+.- -.-....+-.+..+|...|..++|...-+-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445556666666666666665541 01112334445555556666555555544443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.28 E-value=2.6 Score=31.40 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=59.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcC
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIP---ILEKVLEGLCARR 263 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~---~~~~li~~~~~~g 263 (375)
+....|+.+.|++.|.+....-++ ....||.-..++.-.|+.++|++=+++..+. |-. +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456778888888888777665433 6777888888888888888887777776654 322 222 2223333455677
Q ss_pred CHHHHHHHHHHHHhCC
Q 017234 264 KLDRVKSFLKFLLGGG 279 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~ 279 (375)
+.+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7788887777776665
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=93.26 E-value=6.7 Score=36.08 Aligned_cols=158 Identities=5% Similarity=-0.045 Sum_probs=88.9
Q ss_pred hHH--HHHHHHHHcCC-----ChHHHHHHHHHHHhCCCCCCChh-cHHHHHHHHH---------cCCCHHHHHHHHHHHH
Q 017234 144 AVF--NSLICACLCSG-----DVVTALSLFEIMVSSEEYKPNSK-TYDAFISGFS---------SLGNVDAMNKWYAANI 206 (375)
Q Consensus 144 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~m~ 206 (375)
..| ...+.+..... ..+.|+.+|.+......+.|+-. .|..+..++. ...+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554421 35678888888874334555532 2332222221 1223455666666666
Q ss_pred HCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--
Q 017234 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-- 283 (375)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 283 (375)
+.+.. |..+...+..+....++++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+. .|.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~ 406 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR 406 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence 66644 67777777776677777777887787777653 43 345555555566677778877777775543 232
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHH
Q 017234 284 -ENMAQKLVKCYCELGRVDELEEQL 307 (375)
Q Consensus 284 -~~~~~~li~~~~~~g~~~~a~~~~ 307 (375)
..+....++.|+..+ ++.|.+++
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 222333334554443 55555554
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.25 E-value=1.4 Score=37.68 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=60.5
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG-----GGWKINENMAQ 288 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 288 (375)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456777888888888888888888888765 45777888888888888888888888887744 57777777766
Q ss_pred HHHHH
Q 017234 289 KLVKC 293 (375)
Q Consensus 289 ~li~~ 293 (375)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 267
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.24 E-value=0.64 Score=37.43 Aligned_cols=78 Identities=8% Similarity=-0.043 Sum_probs=54.8
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHHC---CCCcCHhHHHHHHHHHHcC
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~ 156 (375)
..+..-+.|... |-++...+. .++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.
T Consensus 117 Wsr~~d~~A~~~----fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRR----FLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHH----HHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 445445677777 455555555 55555555555554 67888898888877643 3367889999999999999
Q ss_pred CChHHHH
Q 017234 157 GDVVTAL 163 (375)
Q Consensus 157 g~~~~a~ 163 (375)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9988874
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.17 E-value=2.1 Score=34.12 Aligned_cols=98 Identities=8% Similarity=-0.044 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH---HHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL---HFF 324 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ 324 (375)
..+..+...|++.|+.+.|.+.+.++.+....+.. ..+-.+|+.....|++..+...+.+....--.+..+. ..-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778889999999999999999998887555443 3467788888999999999988887765433322222 111
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHH
Q 017234 325 SGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m 347 (375)
-.-.-.+...+++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 11222335567888888888665
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=1.9 Score=34.43 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=62.8
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLGG---GWKINENMAQK 289 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ 289 (375)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677788888888888888888888877654443 345667777788888888888887776443 21122111111
Q ss_pred HH--HHHHHcCChHHHHHHHHHHH
Q 017234 290 LV--KCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 290 li--~~~~~~g~~~~a~~~~~~~~ 311 (375)
.. -.+...|++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 12345788888888876654
No 270
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=1.8 Score=37.27 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH
Q 017234 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215 (375)
Q Consensus 138 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 215 (375)
|.+.+..+...++..-....+++.++.++-+++.... ..|+. +-.+.+..+ -.-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555556667777776666665110 11111 111222222 2235566777666666777777777
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777776666655543
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.98 E-value=3.5 Score=32.03 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=8.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 017234 260 CARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~ 277 (375)
...|+|.+|.++++++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344555555555555443
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.92 E-value=3.7 Score=32.24 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=78.7
Q ss_pred HHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017234 56 KTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134 (375)
Q Consensus 56 ~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 134 (375)
.+.+......++.|+...|..++.. ...|++.....++ ...-.+|.......+-.+.. ....+.++=-.|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-------q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-------QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHH
Confidence 4555566677888888888888888 6777766655553 12223555544444433322 233333333333
Q ss_pred HHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 017234 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 135 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 208 (375)
.++ =...+..+++.+...|++-+|+++.+.... .+......++.+..+.+|...-..+|+-..+.
T Consensus 85 LkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 85 LKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 111355667777888888888888776533 22223356677777777766666666655554
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.76 E-value=3.7 Score=31.85 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 191 SLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
+.++.+++..++..+....+. |...++.. ..+...|+|.+|.++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 444555555555555543221 01112222 2234455555555555555443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.66 E-value=0.3 Score=27.12 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|+.|...|.+.|++++|+.+|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6788888999999999999998855
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.53 E-value=7.4 Score=34.75 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
...+|..+...+.+.|.++.|...+..+...+..+ +......-+...-..|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777777777777777777776543111 223333344455566777777777766655
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.52 E-value=4.3 Score=31.95 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=53.6
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHH--HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHh-HHH--
Q 017234 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY--ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA-VFN-- 147 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~-- 147 (375)
.|..-++..+.+..++|+.- |..+.+.|..+-.+. -.......+.|+...|...|++.-...-.|-.. -..
T Consensus 61 ~flaAL~lA~~~k~d~Alaa----f~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAA----FTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHH----HHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34444444455555555555 344444443221111 122223445555555555555554432222111 000
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
.-.-.+...|.+++.....+-+-. .+-+.-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 001123344555555555444443 22222222233444444555555555555555443
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.24 E-value=0.6 Score=27.28 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.81 E-value=8.9 Score=34.03 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=123.1
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHH----HHHHHCC-CCcCHhHHHHHHHHHHc
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF----TSMEAQG-IKPDSAVFNSLICACLC 155 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g-~~p~~~~~~~li~~~~~ 155 (375)
+.+.+.++++..+...+++... ...--.+|..+..+.++.|.+++++..- +...+.. -..-...|..+-+++-+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777775433333211 1133456677777777777776654322 2221110 01123355556666656
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCh---hcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCcCHHhHHHHHHHHHcc
Q 017234 156 SGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGNVDAMNKWYAANIAAG-----FSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 156 ~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~ 227 (375)
..++.+++.+-..-....|..|.. ...-++..++...+.++++++.|+...+.- ......+|-.|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 566666666655554434444421 122345566667777888888887654321 111245677777888888
Q ss_pred CChHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHH----HhCCCCc-CHHHHHHHHHH
Q 017234 228 RDFDSVDRFYEEMMS----LGIIPSIPILEK-----VLEGLCARRKLDRVKSFLKFL----LGGGWKI-NENMAQKLVKC 293 (375)
Q Consensus 228 g~~~~a~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~----~~~~~~~-~~~~~~~li~~ 293 (375)
.|+++|.-+..+..+ .++..-..-|.. |.-++...|.+..|.+.-++. ++.|-.+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887765544432 232221222332 233455667766666665554 3334221 22334456677
Q ss_pred HHHcCChHHHHHHHHH
Q 017234 294 YCELGRVDELEEQLET 309 (375)
Q Consensus 294 ~~~~g~~~~a~~~~~~ 309 (375)
|...|+.+.|+.-++.
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 7888888877776665
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.67 E-value=6.2 Score=31.94 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=127.2
Q ss_pred cCChhHHHHHHHHHHHCCCC-cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 017234 121 VQNVPFAMHVFTSMEAQGIK-PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 199 (375)
.+....+...+......... .....+......+...+++..+...+...............+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555555555443211 13456666667777777777777777666531012344455556666666667777777
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHH-HHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017234 200 KWYAANIAAGFSVNVQTYESLIH-GSLKARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 200 ~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777776654332 122222222 56777777777777777654221 1123334444444566777777777777776
Q ss_pred hCCCCc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 277 GGGWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 277 ~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
... .. ....+..+...+...++++.|...+......... .... +..+...+...|..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEA--LYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHH--HhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 643 22 3566666777777777777777777777664322 1111 333333344556677777776666543
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.45 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEI 168 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~ 168 (375)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=6.3 Score=38.75 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH----HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHH
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS----LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 184 (375)
.....-+....+...++.|..+-.. .+. +..+... ..+-+.+.|++++|...|-+-.. -+.|. .
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----E 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----H
Confidence 3455677788888888888776543 222 3333333 34445678999999988877764 23332 3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 017234 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARR 263 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g 263 (375)
++.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. .| ....+..|.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhC
Confidence 455556667778888889999999986 77788899999999999998777766554 3322 23 445666677777
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
-.++|..+-..... +......++ -..|++++|.+.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777766554432 344444444 4568899999988765
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=7.7 Score=32.43 Aligned_cols=55 Identities=9% Similarity=0.075 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHHcCChHHHHHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGGG---WKINENMAQKLVKCYCELGRVDELEEQL 307 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 307 (375)
|...|-.+.-..++..|...++.--+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445555667777777776643321 123455666677666 346666665554
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=3.2 Score=40.67 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=88.6
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (375)
+..|++++|...+ ++.+. .-.| ..+|.-|....++..--..++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 379 y~Kgdf~~A~~qY---I~tI~-~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 379 YGKGDFDEATDQY---IETIG-FLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HhcCCHHHHHHHH---HHHcc-cCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 4889999998885 33322 1112 24677778888888888889999998876 6777788999999999988
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+-.++.+.-.+ |.. ..-....+..+.+.+-.++|.-+-..... +......++. ..|++++|++.+..+
T Consensus 449 kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 87777665542 111 11234556666666666666555433322 3333444443 556677777766544
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.16 E-value=20 Score=36.95 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=65.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCY 294 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~ 294 (375)
|.+....+...+.+++|.-.|+..-+ ....+.+|...|+|.+|..+..++... -|... -..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33344444556777777666654321 234566777888888888887776432 12222 25567777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
...++.-+|-++..+.... ..-.+..|++...|++|.++...-.
T Consensus 1010 ~e~~kh~eAa~il~e~~sd----------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD----------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC----------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7788888777777665431 2233455667777777776665443
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.00 E-value=8.9 Score=32.53 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred hccCCCCcccHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH---CC
Q 017234 64 IFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA---QG 138 (375)
Q Consensus 64 ~~~~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g 138 (375)
..+..||+..=|..-++ .+..++++|+..|+.+++.--..|.-.-.+.-.+|....+.+++++...-+.++.. ..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 45677888777766666 57778888888865444322222223344556678888888888888877777652 11
Q ss_pred CC--cCHhHHHHHHHHHHcCCChHHHHHHHHHHHh----CCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--
Q 017234 139 IK--PDSAVFNSLICACLCSGDVVTALSLFEIMVS----SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-- 210 (375)
Q Consensus 139 ~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-- 210 (375)
+. -+..+.|++++-...+.+.+-...+|+.-.+ ..+-+.--.|-+-|...|...+++.+..++++++.+.--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 21 2455677777766666555444444432221 000111122334667777777887777777777754311
Q ss_pred --C-------cCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH-----hcCCHHHHHH
Q 017234 211 --S-------VNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLC-----ARRKLDRVKS 270 (375)
Q Consensus 211 --~-------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~-----~~g~~~~a~~ 270 (375)
. .-...|..=|..|...++-.....+|+....- ..-|.+.... +|.-|. +.|++++|-.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 0 12345666677777777766666777665432 2234444333 333332 5567776643
No 286
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.51 E-value=2.7 Score=29.66 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.-+..+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456666667777777888888888888888888888888888877754
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.47 E-value=3 Score=29.15 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+.-++.+-+..+....+.|++.+..+-+++|.+.+++..|.++|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666666667777777777777888788888888877777664
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.24 E-value=11 Score=32.38 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHH-CCCCcCHHhHHHHHHHHHc-cC-ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 192 LGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLK-AR-DFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
+..+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777773322 2233477777777777665 22 233334444444433 457888899999999999999999
Q ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHhCCCCCchHH
Q 017234 268 VKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLET-----LTKCNQSPEVLL 321 (375)
Q Consensus 268 a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~ 321 (375)
..++|...... +..-|...|..+|+.....|+..-..++.++ ++..++..+...
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L 280 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDEL 280 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHH
Confidence 99999988766 5567888999999999999999888888776 344455554443
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.23 E-value=6.9 Score=29.96 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=9.1
Q ss_pred HccCChHHHHHHHHHHHHC
Q 017234 225 LKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~ 243 (375)
...|+|++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3444555555555554443
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=2.8 Score=36.21 Aligned_cols=106 Identities=18% Similarity=0.075 Sum_probs=76.3
Q ss_pred HhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017234 61 SVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGN----ESCLDEYACLIALSGKVQNVPFAMHVFTSME 135 (375)
Q Consensus 61 ~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 135 (375)
.-...|...+..+-..++.. -...+++.+...+ -++.... .|+... .++++.+.+ -+++.++.++..=.
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~L----yKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npI 127 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYL----YKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPI 127 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHH----HHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcc
Confidence 33456677777777777776 4677888888884 3333222 133222 234444433 46778999999889
Q ss_pred HCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 017234 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172 (375)
Q Consensus 136 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (375)
..|+-||.++++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 128 qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 128 QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888763
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.47 E-value=13 Score=33.12 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=132.5
Q ss_pred ccCChhHHHHHHHHHHHCC--CCcCHhHHHHHHHHHHcCCChHHHHHHHHH----HHhCCCCCCChhcHHHHHHHHHcCC
Q 017234 120 KVQNVPFAMHVFTSMEAQG--IKPDSAVFNSLICACLCSGDVVTALSLFEI----MVSSEEYKPNSKTYDAFISGFSSLG 193 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~~ll~~~~~~~ 193 (375)
...+.++|+..|.+-..+- ..-.-.+|..+..+.++.|.+++++..--. ..+...-..-...|..+-.++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776554320 111234677788888888888877654321 1110000111234445555555555
Q ss_pred CHHHHHHHHHHHHHC-CCCc---CHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC
Q 017234 194 NVDAMNKWYAANIAA-GFSV---NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-----IIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~ 264 (375)
++.+++.+-..-... |..| .-...-++-.++.-.+.++.+++-|+...+-- .......|..|-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555555443322 2222 12334456677777788999999988776521 11223568888889999999
Q ss_pred HHHHHHHHHHHHh----CCCCcCHHHH-----HHHHHHHHHcCChHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHH
Q 017234 265 LDRVKSFLKFLLG----GGWKINENMA-----QKLVKCYCELGRVDELEEQLETLTK----CNQSPEVLLHFFSGIIRLY 331 (375)
Q Consensus 265 ~~~a~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~ 331 (375)
+++|.-+.....+ -++..-..-| ..+.-++...|..-+|.+.-++..+ .|-.+. .+.-.-.+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~-~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL-QARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHH
Confidence 9999887776543 2322212223 2344567778888888887776543 333332 222256677888
Q ss_pred HhhCCHHHHHHHHHHH
Q 017234 332 ALSDRLDDVEYSVGRM 347 (375)
Q Consensus 332 ~~~g~~~~A~~~~~~m 347 (375)
...|+.+.|+.-|++.
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999888777654
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.20 E-value=2.8 Score=29.31 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017234 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 127 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
+.+-++.+...++.|++.+..+.+++|-+.+++..|..+++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555444
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=12 Score=31.32 Aligned_cols=209 Identities=9% Similarity=0.025 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
...|.-...+|...+++++|...+.+..+. ..-+...|+ -...++.|.-+.+++.+ ++.-...|+--..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 344666667777778888877766655421 011211111 12345566666666655 1233344566666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhc
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---G--IIPSIPILEKVLEGLCAR 262 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~ 262 (375)
.|..+|.++.|-..+++.-+. ....++++|+++|.+-..- + ..--...+..+-..+.+.
T Consensus 100 lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 777777777666555543221 1233455555555443321 1 011122344555566677
Q ss_pred CCHHHHHHHHHHHHhC----CCCcCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHhhCC
Q 017234 263 RKLDRVKSFLKFLLGG----GWKINE-NMAQKLVKCYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDR 336 (375)
Q Consensus 263 g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 336 (375)
.++++|-..+..-... .--++. ..|-..|-.|.-..++..|++.++.--+. ++..+....+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 7777766555443211 111222 34556666777788999999999884332 122222233378888887 6688
Q ss_pred HHHHHHHH
Q 017234 337 LDDVEYSV 344 (375)
Q Consensus 337 ~~~A~~~~ 344 (375)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 88887765
No 294
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.16 E-value=0.14 Score=39.15 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
+..+.+.+.++....+++.+...+...+....+.++..|++.+..++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444444444444444333334444444455554444444444443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.11 E-value=0.64 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=11.2
Q ss_pred CHHhHHHHHHHHHccCChHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a 233 (375)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 455555555555555555554
No 296
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.45 E-value=2.2 Score=28.57 Aligned_cols=49 Identities=4% Similarity=-0.061 Sum_probs=33.3
Q ss_pred HcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
..++.++|...+....+.-..+.....++..++.+|+..|+++++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776665555555555777777777777777766554
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.28 E-value=2.8 Score=29.57 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 128 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
.+-++.+...++.|++.+..+.+++|-+.+++..|+.+++-.+.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555554443
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.00 E-value=7.1 Score=31.61 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHcCChHHH
Q 017234 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG---GWKINENMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 303 (375)
+|.+.|-.+...+.--++.....|...|. ..+.+++..++-+.++. +-.+|+..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444443333333333322222 44445555554444332 1134455555555555555555444
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.93 E-value=22 Score=32.72 Aligned_cols=304 Identities=10% Similarity=0.067 Sum_probs=160.4
Q ss_pred cchHHHHHHhhcCCcchHHHHHHHhhh-ccCCCCcccHHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCC-------
Q 017234 38 SSSNPLISRLLQVPVSQIKTTLDSVDI-FAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNES------- 106 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~~~~~~~~~m~~-~~~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~------- 106 (375)
...+.+|+++....-......+.+..+ .| ...|-.+..+ ++.+.+.+|.+.+-.-.++......|
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 356677888887776655555555533 33 3345555555 59999999999865434443333322
Q ss_pred ----CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCC----cCHhHHHHHHHHHHcCC--------C-------hHHHH
Q 017234 107 ----CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK----PDSAVFNSLICACLCSG--------D-------VVTAL 163 (375)
Q Consensus 107 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g--------~-------~~~a~ 163 (375)
|-..=++.+..+...|++.++..+++++...=++ -+..+||.++-.+.++- . ++-+.
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 2333366778889999999999999988765333 68889998776665531 1 12222
Q ss_pred HHHHHHHhC-----CCCCCChhcHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHccCChHHHHH
Q 017234 164 SLFEIMVSS-----EEYKPNSKTYDAFISGFSSLG--NVDAMNKWYAANIAAGFSVNV-QTYESLIHGSLKARDFDSVDR 235 (375)
Q Consensus 164 ~~~~~m~~~-----~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~ 235 (375)
-+.++|... ..+-|-...+..++....-.. +..--.++++.-...-+.|+- -+...++..+.. +.+++..
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 222222220 012233333333333322211 111222233322333334442 233444444444 5556555
Q ss_pred HHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH-------HHHHHHH----HcCCh
Q 017234 236 FYEEMMSLGIIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-------KLVKCYC----ELGRV 300 (375)
Q Consensus 236 ~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~----~~g~~ 300 (375)
+-+.+....+.+ -..+|..++....+.++...|.+.+.-+.-. .|+...-. .+.+..+ ..-+.
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 554443322111 2357888888888999999999888877542 34333221 1222222 11123
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHh
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR-LDDVEYSVGRMGK 349 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 349 (375)
.+-..++++....++....-....-.-..-+.+.|. -+.|+.+++..+.
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344555666666554433222111112233455555 6778888877765
No 300
>PRK11906 transcriptional regulator; Provisional
Probab=87.69 E-value=23 Score=32.73 Aligned_cols=161 Identities=7% Similarity=-0.002 Sum_probs=105.1
Q ss_pred hcH--HHHHHHHHcCC-----CHHHHHHHHHHHHHC-CCCcC-HHhHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 017234 180 KTY--DAFISGFSSLG-----NVDAMNKWYAANIAA-GFSVN-VQTYESLIHGSLK---------ARDFDSVDRFYEEMM 241 (375)
Q Consensus 180 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~m~~~-~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~ 241 (375)
..| ...+.+..... ..+.|..+|.+.... ..+|+ ...|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55666654422 356788899998822 23444 3344433333221 234556778888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
+.+ +-|......+..+..-.++++.+...|++....+ || ..+|........-.|+.++|.+.+++..+. .|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence 877 5677888888887788888999999999998754 54 455666666677799999999999997764 45433
Q ss_pred HHH-HHHHHHHHHhhCCHHHHHHHHHH
Q 017234 321 LHF-FSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 321 ~~~-~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
... ....++.|+.. ..++|++++-+
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 211 33334456554 46778877744
No 301
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=22 Score=32.28 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=96.4
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHH--HHHcCCChHHHHHHHHHHHhCCCCCCChhcHH-----------
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC--ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD----------- 183 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----------- 183 (375)
.+.-.|+.++|.++--..++.. ....+...++ ++.-.++.+.|...|++... ..|+...-.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4456677777777776666543 1222333333 33445677888888887765 345543321
Q ss_pred --HHHHHHHcCCCHHHHHHHHHHHHHC---CCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH---HHHHH
Q 017234 184 --AFISGFSSLGNVDAMNKWYAANIAA---GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP---ILEKV 255 (375)
Q Consensus 184 --~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l 255 (375)
.=.+-..+.|.+.+|.+.|.+.+.. +.+|+...|.....+..+.|+.++|+.--++... .|.. .|..-
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHH
Confidence 2223346788888898888887764 3445667777777888888999988887776664 3322 22233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 017234 256 LEGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
..++...++|++|.+-++...+..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556678888888888776643
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.49 E-value=6.3 Score=32.30 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=59.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINENMAQKLVKC 293 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 293 (375)
|.+..++.+.+.+...+++...++-.+.. +.|..+-..+++.+|-.|+|++|..-++-.-+. ...+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566778888999999999988877764 456677888899999999999999888776543 234556678777765
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.33 E-value=31 Score=33.80 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=33.2
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCC-CCcCHhHHHHHHHHHHcC---
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACLCS--- 156 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~--- 156 (375)
+-.|+++.|++.+ ++ ......|...+.+.+..|.-.+-..... ..+.... -.|...-+..||..|.+.
T Consensus 269 lLtgqFE~AI~~L---~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 269 LLTGQFEAAIEFL---YR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHTT-HHHHHHHH---HT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHhhHHHHHHHH---Hh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4677777777774 22 1122245555555555443322222211 2222111 011124566677777663
Q ss_pred CChHHHHHHHHHHHh
Q 017234 157 GDVVTALSLFEIMVS 171 (375)
Q Consensus 157 g~~~~a~~~~~~m~~ 171 (375)
.+..+|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 466777777776665
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.17 E-value=1.5 Score=23.58 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
|..+..++...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444443
No 305
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.08 E-value=7.2 Score=27.26 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017234 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-----LDEYACLIALSGKVQNVPFAMHVFTSME 135 (375)
Q Consensus 76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 135 (375)
..+.+.+.+++..|.+.+.+.++.....+.+. ....-.+.......|++++|...+++..
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555788888888888877777766655543 1222233444556677777777776654
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.04 E-value=35 Score=34.17 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=126.4
Q ss_pred hHHHHHHHhhhccCCCCcc-------cHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCC
Q 017234 54 QIKTTLDSVDIFAFNSSQF-------SWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQN 123 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~-------~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~ 123 (375)
++..++.+....-..|+.. .|+.+-.. ...|+++++.++.+....+....-. +....+..+..+..-.|+
T Consensus 433 ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~ 512 (894)
T COG2909 433 EAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE 512 (894)
T ss_pred HHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch
Confidence 6666666665444444322 45555444 4889999999997766665554443 678888899999999999
Q ss_pred hhHHHHHHHHHHHCCCCcCHhHH---HHH--HHHHHcCCC--hHHHHHHHHHHHhCCCC-C----CChhcHHHHHHHHHc
Q 017234 124 VPFAMHVFTSMEAQGIKPDSAVF---NSL--ICACLCSGD--VVTALSLFEIMVSSEEY-K----PNSKTYDAFISGFSS 191 (375)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~---~~l--i~~~~~~g~--~~~a~~~~~~m~~~~~~-~----~~~~~~~~ll~~~~~ 191 (375)
+++|..+..+..+..-.-+...+ ..+ ...+...|+ ..+....|.....+... + +-..+...++.++.+
T Consensus 513 ~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r 592 (894)
T COG2909 513 LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR 592 (894)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 99999998777654222233322 222 223455673 34444445444432111 1 122344555555555
Q ss_pred C-CCHHHHHHHHHHHHHCCCCcCHHhH--HHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhc
Q 017234 192 L-GNVDAMNKWYAANIAAGFSVNVQTY--ESLIHGSLKARDFDSVDRFYEEMMSLGIIP----SIPILEKVLEG--LCAR 262 (375)
Q Consensus 192 ~-~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~--~~~~ 262 (375)
. +...++..-++--......|-...+ ..|+......|+.++|...++++......+ +-.+-...++. ....
T Consensus 593 ~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~q 672 (894)
T COG2909 593 LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQ 672 (894)
T ss_pred HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhccc
Confidence 2 1222333333333333333333323 367888889999999999999987643222 32232333332 2366
Q ss_pred CCHHHHHHHHHH
Q 017234 263 RKLDRVKSFLKF 274 (375)
Q Consensus 263 g~~~~a~~~~~~ 274 (375)
|+.+.+.....+
T Consensus 673 g~~~~a~~~l~~ 684 (894)
T COG2909 673 GDKELAAEWLLK 684 (894)
T ss_pred CCHHHHHHHHHh
Confidence 888777776655
No 307
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=87.00 E-value=19 Score=31.16 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCChHHH
Q 017234 285 NMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a 303 (375)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466677777777766543
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.78 E-value=0.9 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHH
Q 017234 104 NESCLDEYACLIALSGKVQNVPFAM 128 (375)
Q Consensus 104 ~~~~~~~~~~li~~~~~~~~~~~a~ 128 (375)
.+.|..+|+.+...+...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4455666666666666666666554
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.66 E-value=0.49 Score=36.16 Aligned_cols=84 Identities=7% Similarity=0.037 Sum_probs=52.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcC
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 192 (375)
.++..+.+.+.+......++.+...+..-+....+.++..|++.++.++..++++.. .+ .-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhc
Confidence 356667777777777777777776655556777788888888877767776666611 11 2223455556666
Q ss_pred CCHHHHHHHHHH
Q 017234 193 GNVDAMNKWYAA 204 (375)
Q Consensus 193 ~~~~~a~~~~~~ 204 (375)
|.++++.-++.+
T Consensus 84 ~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 84 GLYEEAVYLYSK 95 (143)
T ss_dssp TSHHHHHHHHHC
T ss_pred chHHHHHHHHHH
Confidence 666666655544
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.56 E-value=27 Score=32.37 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=83.2
Q ss_pred HHHHhccCChhHH-HHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC
Q 017234 115 IALSGKVQNVPFA-MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (375)
Q Consensus 115 i~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 193 (375)
|.--...|++..| .++++.+....-.|+.....+.| +...|+++.+...+..... -+..+..+...++....+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 3334455666554 45666666554455554444433 4567888888888877764 34556677888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 244 (375)
++++|...-+-|....++ ++.....-....-..|-++++.-.|++....+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999888888877776 55444444444445567888888888876554
No 311
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.20 E-value=28 Score=32.11 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHhccCChhHHHHHHHHHHHC--CCCc--------
Q 017234 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA--LSGKVQNVPFAMHVFTSMEAQ--GIKP-------- 141 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~--g~~p-------- 141 (375)
-+.+|+++-.++.+..... +....+....+ .|-.+.. .+.+.+++..|.+.+....+. +-.|
T Consensus 49 ~grilnAffl~nld~Me~~----l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 49 GGRILNAFFLNNLDLMEKQ----LMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred hhHHHHHHHHhhHHHHHHH----HHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 4456666555555554444 33333333222 2333333 345677788888877766554 2222
Q ss_pred ----CHhHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCChhcHHHHHHHHHc
Q 017234 142 ----DSAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 142 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~~ll~~~~~ 191 (375)
|-..=+..++++.+.|++.++..+++++... ....-+..+|+.++-.+++
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 1122245667777888888888888877762 1122466777776555554
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.17 E-value=1.9 Score=24.38 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444455554444444443
No 313
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.59 E-value=14 Score=28.22 Aligned_cols=82 Identities=4% Similarity=-0.038 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CcCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGF-----SVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKV 255 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (375)
.++++.-....+.......+++.+..... ..+..+|.+++.+.+...- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555555555555555555522110 1244556666666654444 33455666666665566666666666
Q ss_pred HHHHHhcC
Q 017234 256 LEGLCARR 263 (375)
Q Consensus 256 i~~~~~~g 263 (375)
|.++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 66665543
No 314
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.58 E-value=7.4 Score=26.66 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +|... |..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~a------F~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGW------FSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcH------HHHHHHHHHHcCchhhhh
Confidence 4567777777773 444445554444446688888888888887 65443 778888888888765554
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.37 E-value=2.5 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3344444444444444444444443
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.31 E-value=18 Score=29.18 Aligned_cols=130 Identities=14% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCH-HHH--HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhH
Q 017234 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL-DEY--ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145 (375)
Q Consensus 69 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~-~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 145 (375)
--...|..++.....+.++.. .. .+++...+..+. .++ -.+...+...|+++.|..-++..... |....
T Consensus 52 ~AS~~Y~~~i~~~~ak~~~~~-~~----~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~ 123 (207)
T COG2976 52 EASAQYQNAIKAVQAKKPKSI-AA----AEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDEN 123 (207)
T ss_pred HHHHHHHHHHHHHhcCCchhH-HH----HHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHH
Confidence 334567777777666666333 33 344444443222 222 23455678888888888888877653 22223
Q ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 146 FN-----SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 146 ~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
+. .|.+.....|.+|+|+..++...+ .+. .......-.+.+...|+-++|..-|+...+.+
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKE-ESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 32 344566777888888888887765 222 22334455677888888888888888877765
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.96 E-value=19 Score=29.08 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=83.3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE--KVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQ 288 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 288 (375)
-...|..++.... .+.. +.....+.+...+-...-.++. .+...+...+++++|..-++..+..-..-+ ..+--
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 4455666666654 3344 4455555665532111111222 234566788899999888887764321111 12223
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
.|.+.....|.+|+|..+++...+.+..+.. ...-.+.+...|+-++|..-|++.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~----~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIV----AELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHH----HHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4566777889999999999887765544321 4456678889999999999999988876
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.83 E-value=33 Score=31.83 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHhcCChHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC
Q 017234 80 SLQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (375)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~m~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (375)
+...|+.-.|-+.+ ++.+... +.|+....- ...+...|+++.+.+.+....+. +.....+...+++...+.|+
T Consensus 299 ~~~~gd~~aas~~~---~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 299 QLADGDIIAASQQL---FAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HhhccCHHHHHHHH---HHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 37888888777764 4444322 236554443 34456789999999988776543 34466788899999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 210 (375)
+++|..+-..|.. ..+ .+....+......-..|-++++.-.|+++.....
T Consensus 373 ~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLS-NEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhc-ccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9999999999986 322 3333333333344566788999999998876654
No 319
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=27 Score=30.61 Aligned_cols=135 Identities=10% Similarity=0.000 Sum_probs=63.9
Q ss_pred CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC
Q 017234 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----LGIIPS 248 (375)
Q Consensus 174 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 248 (375)
.+..|...++.|..+ +..+.++-.+..++..++ |-.--...+-....-||+.||-+.|++.+++..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344444444444432 222333333334443333 2111234455566677777777777776655543 355666
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 249 IPILEKVLEG-LCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 249 ~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+..+.+-+.. |....-+.+-.+..+.+.+.|...+. .+|..+- +....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 5544433332 23333344444444445555543322 2333222 2345567777777665543
No 320
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.03 E-value=3.5 Score=22.09 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|..+...|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444443
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.81 E-value=8.7 Score=31.54 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=59.2
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG--IIPSIPILEKVLEG 258 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~ 258 (375)
|.+..++.+.+.+...+++....+-++..+. |..+-..++..+|-.|+|++|..-++-.-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556677888899999999999988887654 77888899999999999999987776655432 23445667777655
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.57 E-value=24 Score=30.27 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC- 295 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~- 295 (375)
.=|.+++..++|.+++...-.--+. .++|. ..-.-|-.|.+.|....+.++-..-+...-.-+..-|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3477888888888877655443322 23443 344445567888888888888777665422223334666665554
Q ss_pred ----HcCChHHHHHHH
Q 017234 296 ----ELGRVDELEEQL 307 (375)
Q Consensus 296 ----~~g~~~~a~~~~ 307 (375)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 478888888877
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=18 Score=34.45 Aligned_cols=133 Identities=9% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
....+.++.-+.+.|-.++|+++ .+|+..- .....+.|+++.|.++..+.. +..-|..|.+
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN-------SEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHH
Confidence 33455666666666666666554 2232211 233346777777777765543 2445778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-...++.| ..+. ...+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHH
Confidence 88888888887777765443 5556666667777666655556666655 3332 2234556777777
Q ss_pred HHHHHHH
Q 017234 268 VKSFLKF 274 (375)
Q Consensus 268 a~~~~~~ 274 (375)
+.+++..
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 7766654
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.51 E-value=2.9 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=9.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 017234 148 SLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
.+...+.+.|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 325
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.44 E-value=14 Score=31.62 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=55.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh-CCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 017234 148 SLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 226 (375)
.=|.+++..++|.+++...-+--+ -..++|. ....-|-.|++.+.+..+.++-..-.+.--.-+...|.++++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 346778888888887765544433 1223333 3444455678888888888777766654333345557777666554
Q ss_pred -----cCChHHHHHHH
Q 017234 227 -----ARDFDSVDRFY 237 (375)
Q Consensus 227 -----~g~~~~a~~~~ 237 (375)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888776
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.30 E-value=18 Score=27.70 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=30.4
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
..++++++..++..|.-...-.+...+|... .+...|+|++|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3667777777777776522112222333333 3456777777777777776654
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=23 Score=33.83 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
+.|+++.|.++..+. .+..-|..|-++....|++..|.+.|..... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 456666665554321 2566677777777777777777776655442 4456666666676666555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHH
Q 017234 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (375)
+-....+.| +.|. -..+|...|+++++.+++.
T Consensus 714 la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHH
Confidence 555555555 2222 2334556677777666654
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.90 E-value=4.4 Score=21.62 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777788888888888888887765
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.58 E-value=72 Score=33.30 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH
Q 017234 246 IPSIPILEKVLEGL----CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 246 ~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 321 (375)
.|+...+..+..+| ...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 46665555544444 456777777777665422 122467788888888888887766431 12222
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 322 HFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+-..|+..+...++.-+|-++..+...
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 1135667777777777777777666543
No 330
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.56 E-value=33 Score=31.53 Aligned_cols=213 Identities=7% Similarity=0.007 Sum_probs=100.7
Q ss_pred HHHhhcCCcchHHHHHHHhhhccCCCCccc---HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHH
Q 017234 44 ISRLLQVPVSQIKTTLDSVDIFAFNSSQFS---WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALS 118 (375)
Q Consensus 44 l~~l~~~~~~~~~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~--~~~~li~~~ 118 (375)
+...++.|..+ ++..+.+.|..|+... ++.|-.++..|+.+-+.-+ ++ .+..|+.. ...+.+...
T Consensus 6 L~~A~~~g~~~---iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~---~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 6 LCDAILFGELD---IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLL----MK---HGAIPDVKYPDIESELHDA 75 (413)
T ss_pred HHHHHHhCCHH---HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----Hh---CCCCccccCCCcccHHHHH
Confidence 33344445543 3444445677776533 4444444677776544333 22 12223211 122345566
Q ss_pred hccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcH--HHHHHHHHcCCCHH
Q 017234 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY--DAFISGFSSLGNVD 196 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~ll~~~~~~~~~~ 196 (375)
+..|+.+.+..+++.-....-..+..- ...+...+..|+.+ +++.+.+ .|..|+.... .+.+...+..|+.+
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 678888776655543211100111111 23344455667664 3344444 4555543221 12333445667765
Q ss_pred HHHHHHHHHHHCCCCcC---HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHH
Q 017234 197 AMNKWYAANIAAGFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---LEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 197 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~ 270 (375)
-+ +.+.+.|..++ ....+.+ ...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-
T Consensus 150 ~v----~~Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i--- 217 (413)
T PHA02875 150 GI----ELLIDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI--- 217 (413)
T ss_pred HH----HHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH---
Confidence 43 34445555443 2233333 3344556654 3445566666665422 1244444456676654
Q ss_pred HHHHHHhCCCCcCHH
Q 017234 271 FLKFLLGGGWKINEN 285 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~ 285 (375)
.+.+.+.|..++..
T Consensus 218 -v~~Ll~~gad~n~~ 231 (413)
T PHA02875 218 -VRLFIKRGADCNIM 231 (413)
T ss_pred -HHHHHHCCcCcchH
Confidence 44555677666653
No 331
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.48 E-value=5 Score=21.31 Aligned_cols=24 Identities=4% Similarity=-0.135 Sum_probs=10.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 325 SGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
..+...+...|++++|++.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.09 E-value=4.2 Score=23.81 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=11.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 017234 290 LVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=32 Score=28.77 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=15.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 293 CYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
.-...+++.+|.++|+++.......
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3345677777777777776654433
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.87 E-value=50 Score=31.04 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
.|-...-+++..+++....+-++.+..+|...| -+-..|..++.+|..+ ..++-..+|+++.+ . .-+......-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve-~--dfnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE-Y--DFNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-h--cchhHHHHHH
Confidence 456667788889998888888999999998875 4677888889998888 66778888888887 3 3334444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCc--C---HHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSV--N---VQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGL 259 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~ 259 (375)
+.-+...++...+...|.+...+-++. + ...|.-+...- -.+.+..+++..++... |..--...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444477788888887776543321 1 12455544421 34566777777666653 4333445566666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
....++++|.+++..+++.. .-|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 78888888888888877765 33555544455443
No 335
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.76 E-value=41 Score=30.00 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH-HC-C----CCcCHhHH
Q 017234 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQ-G----IKPDSAVF 146 (375)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~-g----~~p~~~~~ 146 (375)
.+.+-.+ .+.+.+......+..++++|....-.-......++..|.+.+++..++..++.-. +. + .+|.....
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~ 184 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLL 184 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHH
Confidence 3445555 4667777777776666777765443333444556677777777766665554221 11 1 12211110
Q ss_pred HHHH--HHHHcCCChHHHHHHHHHHHh
Q 017234 147 NSLI--CACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 147 ~~li--~~~~~~g~~~~a~~~~~~m~~ 171 (375)
-..= ..|...+++++|+-+|.....
T Consensus 185 Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 185 YLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHhcceeeeccccHHHHHHHHHHHHh
Confidence 0000 112345678888888888775
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.47 E-value=3.5 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 326 GIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
.+..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 367899999999999999999997653
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.88 E-value=39 Score=29.22 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH-----hCCCCCchHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT-----KCNQSPEVLL 321 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~ 321 (375)
+++.....|...|.+.+|.++.+..+..+ +.+...+-.|+..+...|+--.|.+-++.+. +.|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 35566677888888888888888887765 5677778888888888888666655555543 3466555444
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.63 E-value=61 Score=31.31 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=97.8
Q ss_pred HhccCChhHHHHHHHHHHH-------CCCCcCHhHHHHHHHHHHcCC-----ChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 118 SGKVQNVPFAMHVFTSMEA-------QGIKPDSAVFNSLICACLCSG-----DVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+...+|++.|...|....+ .| .+...+.+..+|.+.. +.+.|..+|...-+ .| .|+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHH
Confidence 4577899999999998876 54 4446677777777753 56779999998887 43 3555444333
Q ss_pred HHHHHc-CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 017234 186 ISGFSS-LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL--KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (375)
Q Consensus 186 l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (375)
+..... ..+...|.++|...-+.|.. ...-+-+++.... ...+.+.|..++++.-+.| .|-..--...+..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 333333 34678999999999998853 3322222222222 3457888999999998888 3432222233334444
Q ss_pred CCHHHHHHHHHHHHhCC
Q 017234 263 RKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 263 g~~~~a~~~~~~~~~~~ 279 (375)
+..+.+...+..+.+.|
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 67777666666665554
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.20 E-value=65 Score=31.92 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=71.3
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCc---CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKP---DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
++.+.+.+.+++|+++-+.-... .| ....+...|..+.-.|++++|-...-.|.. -+..-|..-+.-+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcc
Confidence 44455556666666655443322 33 234556666666666777777666666654 334445444444554
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH------------------HHHHCCCCCCHHHHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE------------------EMMSLGIIPSIPILE 253 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------------------~m~~~~~~p~~~~~~ 253 (375)
.++... ++.-+.......+...|..++..+.. .+...-.+... +..+.. +++ ..--
T Consensus 436 ~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~S-e~~-~L~e 509 (846)
T KOG2066|consen 436 LDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNS-EST-ALLE 509 (846)
T ss_pred ccccch---hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhc-cch-hHHH
Confidence 444433 22222222222344455555555544 11111111110 011110 111 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 017234 254 KVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
.|+..|...++++.|.+.+-.+.
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36777777888888888776654
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.12 E-value=46 Score=29.60 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=88.5
Q ss_pred HHhcCChHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc---
Q 017234 80 SLQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC--- 155 (375)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 155 (375)
++..++.+++...++.........-. .....|........+...+.+..++.+-....+ .+......++..+..
T Consensus 39 ~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~ 116 (352)
T PF02259_consen 39 ALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLP 116 (352)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHH
Confidence 34888888888886655444432221 223344444444444444444444444332111 001122222222111
Q ss_pred --CCChHHHHHHH---HHHHhC-CCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHc
Q 017234 156 --SGDVVTALSLF---EIMVSS-EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV---NVQTYESLIHGSLK 226 (375)
Q Consensus 156 --~g~~~~a~~~~---~~m~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~ 226 (375)
..+++.-..++ ..+... ........+|..+...+.+.|.++.|...+..+...+... ++...-.-...+-.
T Consensus 117 ~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~ 196 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA 196 (352)
T ss_pred HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH
Confidence 12222111111 111110 0123445678889999999999999999999988754222 34555556777788
Q ss_pred cCChHHHHHHHHHHHHC
Q 017234 227 ARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~ 243 (375)
.|+..+|...+++....
T Consensus 197 ~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 197 QGEQEEAIQKLRELLKC 213 (352)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999888874
No 341
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=46 Score=28.71 Aligned_cols=128 Identities=9% Similarity=0.091 Sum_probs=60.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIP-------ILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKINENMAQK 289 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 289 (375)
.+-..+.+++++|...|.++...|+..|.. +...+...|.+.|+.....+......+. ..+-...+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 334445566666666666666665544433 2334555566666555444443332211 11112333444
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 290 LVKCYCEL-GRVDELEEQLETLTKCNQSPEV---LLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 290 li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|+..+... ..++.-.++.....++-..-.. ....-.-++..+.+.|++.+|+.+.+.+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44444322 2344444444443332111100 01113456777888888888887665443
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.43 E-value=23 Score=26.25 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
-+..+.+..+..-++.|++.+...-++++.+.+|+..|.++|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345556666666677888888888888888888888888888877654
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.74 E-value=7.3 Score=20.70 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.43 E-value=4.1 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=8.3
Q ss_pred HHHHHHhhCCHHHHHHHH
Q 017234 327 IIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 327 li~~~~~~g~~~~A~~~~ 344 (375)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444444
No 345
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=76.43 E-value=37 Score=26.99 Aligned_cols=111 Identities=10% Similarity=0.136 Sum_probs=54.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..+++..+.+.|.-.|..---..+..-.+.| ..-..+.+++.+.| .+..+....+..+......+.|..++..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG--i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG--IDDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC--CCHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 5555666666665555444444444444444 33445556666666 3445555555555555555555555544333
Q ss_pred CC-CCCchHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHh
Q 017234 313 CN-QSPEVLLHFFSGIIRLYALSDR-LDDVEYSVGRMGK 349 (375)
Q Consensus 313 ~~-~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 349 (375)
.. ..++... ..-+...+...|- ++.+..++..+..
T Consensus 130 ~~~~~~~~~~--k~Ki~r~L~~rGFs~~~i~~~l~~~~~ 166 (174)
T COG2137 130 RENKPPDKKE--KAKIQRFLLRRGFSYEVIKEALNEAEE 166 (174)
T ss_pred ccccCcchhH--HHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 32 2233222 3444555555553 4555555555433
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.10 E-value=5.8 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=9.1
Q ss_pred HHHHhhCCHHHHHHHHHHHH
Q 017234 329 RLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~ 348 (375)
.++.+.|++++|.+.|+++.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33444444444444444444
No 347
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.89 E-value=6.1 Score=34.09 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
|+..|+.-.+.|++++|+.+++|.++.|+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44445555555555555555555555444
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.52 E-value=73 Score=30.03 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=121.0
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
..|....-+++..+..+-++.-+..+-.+|.. +..+...|..++..|... ..+.-..+|+++.+..+. |++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 45667778888999888888888899999987 346777888999999888 667788899999887664 5555555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGII-----PSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKC 293 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 293 (375)
|..-|-+ ++.+.+...|.+....-++ .-...|..+... -..+.+....+...+... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 8888888888877654321 112345555432 245677777777777553 544555667777788
Q ss_pred HHHcCChHHHHHHHHHHHhCCC
Q 017234 294 YCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
|....++++|.+++..+.+.+-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcc
Confidence 8899999999999998877543
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.28 E-value=43 Score=27.29 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPS-----IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 297 (375)
-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|..--...++.+ +........-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3556777777777777766642 121 1234444455667777777776666665543 11222233334567777
Q ss_pred CChHHHHHHHHHHHhCC
Q 017234 298 GRVDELEEQLETLTKCN 314 (375)
Q Consensus 298 g~~~~a~~~~~~~~~~~ 314 (375)
..+++|..=++.+.+.+
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77777777777777644
No 350
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.27 E-value=40 Score=26.93 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCh-hcH-----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 159 VVTALSLFEIMVSSEEYKPNS-KTY-----DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~-~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
++.|+.+|+.+.+....+.+. ..- -..+-.|.+.|.+++|.+++++... +|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 356666666666522111001 111 1233456677777777777776665 2444444444444444444
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.16 E-value=19 Score=26.68 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+.++.....++.|++.....-++++-+.+++..|..+|+-.+.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555543
No 352
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.01 E-value=29 Score=25.07 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666555
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.56 E-value=28 Score=24.71 Aligned_cols=78 Identities=13% Similarity=0.007 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ +.||...|..|. -.+.|..+.+..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555554444443211 2222223334455566666666555444 255555554442 2355555555555555
Q ss_pred HHhCC
Q 017234 275 LLGGG 279 (375)
Q Consensus 275 ~~~~~ 279 (375)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55554
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.03 E-value=1e+02 Score=31.09 Aligned_cols=306 Identities=10% Similarity=0.090 Sum_probs=163.2
Q ss_pred hHHHHHHhhcCCcchHHHHHHHhhhccC-------CCCcccHHHHHHHH-----hcCChHHHHHHHHHHHHHhhcCCCCC
Q 017234 40 SNPLISRLLQVPVSQIKTTLDSVDIFAF-------NSSQFSWDALITSL-----QSSSPKKAQLVLEWRLDKMLKGNESC 107 (375)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~~~-------~p~~~~~~~li~~~-----~~~~~~~a~~~~~~~~~~m~~~~~~~ 107 (375)
...|.+++....+. ..++++..+.|+ .+.-+.|..++.-+ ..+......++...+.......|.|+
T Consensus 287 ~~eL~~~Ltg~~ng--~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~ 364 (894)
T COG2909 287 NDELCNALTGEENG--QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPS 364 (894)
T ss_pred hHHHHHHHhcCCcH--HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChH
Confidence 33444555444443 355666655443 23455566666652 22223333444333344445556555
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHC---------------CCCcCHhHHH----HHHH--HHHcCCChHHHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQ---------------GIKPDSAVFN----SLIC--ACLCSGDVVTALSLF 166 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~~~~----~li~--~~~~~g~~~~a~~~~ 166 (375)
. .|....+.|+++.|-.++++-... ++ |+....+ .++. ......++++|..+.
T Consensus 365 e-----AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li 438 (894)
T COG2909 365 E-----AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLI 438 (894)
T ss_pred H-----HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHH
Confidence 3 344555778888888877765211 12 2222111 1222 234567899999999
Q ss_pred HHHHhCCCCCCCh-------hcHHHHH-HHHHcCCCHHHHHHHHHHHHHC----CCCcCHHhHHHHHHHHHccCChHHHH
Q 017234 167 EIMVSSEEYKPNS-------KTYDAFI-SGFSSLGNVDAMNKWYAANIAA----GFSVNVQTYESLIHGSLKARDFDSVD 234 (375)
Q Consensus 167 ~~m~~~~~~~~~~-------~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~ 234 (375)
.+..... -.|+. ..|+.+- ......|++++|.++-+...+. -..+....+.++..+..-.|+++.|.
T Consensus 439 ~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 439 ARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred HHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHH
Confidence 8887622 12222 1344332 2234568888888877765543 23346777888888999999999999
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHH--HHHHhcCCH--HHHHHHHHHHHhC-----C-CCcCHHHHHHHHHHHHHcC-Ch
Q 017234 235 RFYEEMMSLGIIPSIP---ILEKVL--EGLCARRKL--DRVKSFLKFLLGG-----G-WKINENMAQKLVKCYCELG-RV 300 (375)
Q Consensus 235 ~~~~~m~~~~~~p~~~---~~~~li--~~~~~~g~~--~~a~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g-~~ 300 (375)
.+.....+..-.-+.. .+..+. ..+...|+. .+....+...... . ..+-..++..+..++.+.. ..
T Consensus 518 ~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~ 597 (894)
T COG2909 518 ALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAE 597 (894)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhh
Confidence 8887766542222332 233332 234456632 2233333333221 1 0123345666666666521 12
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
.++..-+.-.......|-.....+..|+......|+.++|...+.++......+
T Consensus 598 ~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 598 AEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 223333333333333343333223467888899999999999999988765543
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.80 E-value=14 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~ 269 (375)
++..++.+++..|++.+++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.12 E-value=57 Score=28.79 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 260 CARRKLDRVKSFLKFLLGGG-WKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
.+.|+..+|.+.++.+.+.- +..-..+...|+.++....-+.+...++.+..
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566666666655554321 00011123345555555555555555544443
No 357
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.76 E-value=53 Score=27.17 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHH
Q 017234 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183 (375)
Q Consensus 104 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 183 (375)
.+.-+.+||.+--.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-|.+=+...-+...-.|=...|-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 344577899999999999999999999999998753333334444333 3356888888766666555332233223333
Q ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC------CCCHHHHHHHH
Q 017234 184 AFISGFSSLGNVDAMNKWY-AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI------IPSIPILEKVL 256 (375)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------~p~~~~~~~li 256 (375)
-+. -+.-++.+|..-+ ++... .|..-|..-|-.|.- |+.. ...+++..+...- .-=..||-.+.
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 222 2334555655433 33333 233334333333221 2211 1122333332110 01124666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 017234 257 EGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
.-+...|+.++|..+|+-....
T Consensus 245 K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHH
Confidence 7777788888888888776654
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.70 E-value=41 Score=25.79 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCC----CCCChhcHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 147 NSLICACLCSGDVVTALSLFEIMVSSEE----YKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
|.++.-....+.+...+.+++.+.--.+ -..+...|.+++.+.++..- ---+..+|..|++.+.++++.-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444444444444444422000 02233456666666655444 334555666666655666666666666
Q ss_pred HHHHcc
Q 017234 222 HGSLKA 227 (375)
Q Consensus 222 ~~~~~~ 227 (375)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665543
No 359
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.06 E-value=29 Score=26.62 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 203 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
+.+.+.|.+++.. -..++..+...++.-.|.++|+++.+.+...+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443322 33344444444444555555555555443333333333333333333
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.71 E-value=48 Score=33.63 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
|..|+..|...|..++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566666666666666666666654
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.61 E-value=35 Score=24.61 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
|..++..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666654
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.56 E-value=19 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=14.1
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
.|+..+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 363
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.74 E-value=13 Score=23.68 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+....+++.+... .-|-.-.-.+|.++...|++++|.++.+++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444332 22333334456666666666666666666554
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.27 E-value=25 Score=28.37 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 261 ARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
...+.+......+.+.+. ...|++.+|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444443333333221 2457777777777777777777777777777665
No 365
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=69 Score=28.39 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=23.5
Q ss_pred HHHccCChHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 017234 223 GSLKARDFDSVDRFYEEMMSL---GIIPSIPILEK--VLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
..-+.++.++|+++++++.+. .-.|+.+.|.. +...+...|+..++.+.+.+..+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333444555555555555432 11334333322 22233344555555555544443
No 366
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.72 E-value=60 Score=26.51 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=50.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCChh-----cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 017234 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSK-----TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 226 (375)
-+.++|++++|..-|....+ -+++... .|..-..++.+.+.++.|.+--....+.++. ......--..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 35667778888777777776 2333322 2333334556666677666666555554432 22222222345666
Q ss_pred cCChHHHHHHHHHHHHC
Q 017234 227 ARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~ 243 (375)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66677777767666655
No 367
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.64 E-value=21 Score=21.27 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=14.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 291 (375)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555554445444444444433
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.89 E-value=77 Score=27.43 Aligned_cols=161 Identities=13% Similarity=0.068 Sum_probs=87.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHh-------HHHHHHHHHHcCCChHHHHHHHHHHHh---CCCCCCChhcHH
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA-------VFNSLICACLCSGDVVTALSLFEIMVS---SEEYKPNSKTYD 183 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ 183 (375)
+.+...+.+++++|...+.+....|+..+.. +...+...|...|+...--+.....++ +..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455667778888888888888777665543 445567777777776544443332221 111123334455
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHCCC-----CcCHHhHHHHHHHHHccCChHHHHHHH----HHHHHCCCCCCHHHHH
Q 017234 184 AFISGFSSLG-NVDAMNKWYAANIAAGF-----SVNVQTYESLIHGSLKARDFDSVDRFY----EEMMSLGIIPSIPILE 253 (375)
Q Consensus 184 ~ll~~~~~~~-~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~ 253 (375)
+++.-+.... .++....+.....+--. -.-...-.-++..+.+.|.+.+|+.+. .++++.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 6666554433 35555555544433211 111223345678888999999988765 4445555566654443
Q ss_pred HHH-HHHHhcCCHHHHHHHHHH
Q 017234 254 KVL-EGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 254 ~li-~~~~~~g~~~~a~~~~~~ 274 (375)
.+= .+|-...++.++..-+..
T Consensus 169 llESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHH
Confidence 332 344455555555444443
No 369
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.74 E-value=6.1 Score=29.55 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=18.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
..|.-.+|..+|++|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344555666667777777666653 5555544
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.12 E-value=97 Score=28.28 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHH--hHHHHHHHHH--ccCChHHHHHHHHHHHHC
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQ--TYESLIHGSL--KARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 243 (375)
.+.+.+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888888888888776 444443 3444444443 356677787777776654
No 371
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.07 E-value=15 Score=31.77 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=21.4
Q ss_pred cCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCch
Q 017234 282 INENM-AQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319 (375)
Q Consensus 282 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 319 (375)
||... |+.-|....+.||+++|++++++.+..|...-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar 292 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSAR 292 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Confidence 44433 445666666666666666666666665554433
No 372
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.44 E-value=89 Score=27.60 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=77.4
Q ss_pred CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCcCH
Q 017234 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG----GGWKINE 284 (375)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 284 (375)
++.|..-++.|..+ ...+.++-.+..++..+. |-.--...+-....-||+.|+.+.|.+.++...+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555555442 222334444444444443 2111234566677789999999999998887644 4677777
Q ss_pred HHHHHHH-HHHHHcCChHHHHHHHHHHHhCCCCCchHHH--HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 285 NMAQKLV-KCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 285 ~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
..+..=+ -.|....-+.+-.+..+.+.+.|...+.... +|..+- +....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 6655433 2343444444555555666666655443321 255554 3445688999988877654
No 373
>PRK12356 glutaminase; Reviewed
Probab=67.32 E-value=67 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=7.4
Q ss_pred CCCcCHHhHHHHHH
Q 017234 209 GFSVNVQTYESLIH 222 (375)
Q Consensus 209 ~~~~~~~~~~~ll~ 222 (375)
|.+|+-..||.++.
T Consensus 93 G~EPSG~~FNsi~~ 106 (319)
T PRK12356 93 GADPTGLPFNSVIA 106 (319)
T ss_pred CCCCCCCCcchHHH
Confidence 44555555555544
No 374
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.89 E-value=38 Score=30.01 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
.+-|.+.|.+++|.+.|..-... .| |.+++..-..+|.+.+.+..|+.=-......+ ..-...|+.-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 34567777788888877766554 34 77777777777777777776665444443321 1111223333333333444
Q ss_pred HHHHHHHHHHHHhCCCCcC
Q 017234 265 LDRVKSFLKFLLGGGWKIN 283 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~ 283 (375)
..+|.+=++..++ ++|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 5555544444443 3454
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.67 E-value=25 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHH
Q 017234 193 GNVDAMNKWYAANIAAGFSVNVQTYE 218 (375)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~~~~~~~ 218 (375)
|...++..++++|.+.|+..+...|.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33333444444444444333333333
No 376
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.47 E-value=96 Score=27.26 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=66.5
Q ss_pred HHHHHcCCC---hHHHHHHHHHHHhCCCC---CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 150 ICACLCSGD---VVTALSLFEIMVSSEEY---KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 150 i~~~~~~g~---~~~a~~~~~~m~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
+...+ |+ .+.|.+.|+.......- ..+...-..++....+.|..+.-..+++..... ++...-..++.+
T Consensus 136 ~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHH
T ss_pred HHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHh
Confidence 44444 54 46778888887762111 334445556666777777766655555555442 467778888888
Q ss_pred HHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRK--LDRVKSFLKF 274 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~ 274 (375)
++...+.+...++++.....+ +++.. ...++.++...+. .+.+.+++..
T Consensus 211 La~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 211 LACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 888888888888888888754 44433 2334444442333 2555555543
No 377
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.44 E-value=96 Score=27.26 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHCCC----CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 195 VDAMNKWYAANIAAGF----SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
.+.|.+.|++....+. ..++..-..++....+.|+.++...+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888998887522 34666677788888888887766666666554 3567788899999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCCh--HHHHHHHHH
Q 017234 271 FLKFLLGGGWKINENMAQKLVKCYCELGRV--DELEEQLET 309 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~ 309 (375)
+++.+...+..++... ..++.++...+.. +.+++.+..
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 9999988652233333 3344444434433 666666544
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.11 E-value=18 Score=22.96 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.-.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456777777777777777776654
No 379
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=64.91 E-value=62 Score=28.75 Aligned_cols=81 Identities=10% Similarity=-0.022 Sum_probs=55.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 228 (375)
..-|.+.|++++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=-....... ...+.+|++.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHH
Confidence 4568899999999999998876 345 88888888889999988887776555544421 23355666655
Q ss_pred ChHHHHHHHHHHH
Q 017234 229 DFDSVDRFYEEMM 241 (375)
Q Consensus 229 ~~~~a~~~~~~m~ 241 (375)
.-.+++....+.+
T Consensus 173 ~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 173 QARESLGNNMEAK 185 (536)
T ss_pred HHHHHHhhHHHHH
Confidence 5444444444433
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=1.6e+02 Score=29.46 Aligned_cols=73 Identities=14% Similarity=-0.017 Sum_probs=47.2
Q ss_pred HHH-HhcCChHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHH
Q 017234 78 ITS-LQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153 (375)
Q Consensus 78 i~~-~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 153 (375)
|.. .+.+.+++|++.. +.. .+.+| -.......|..+.-.|+++.|-...-.|... +..-|.-.+..+
T Consensus 363 i~Wll~~k~yeeAl~~~----k~~-~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAA----KAS-IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHH----Hhc-cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 445 5777888888883 322 22333 4566778888888889999988888777754 445555555555
Q ss_pred HcCCCh
Q 017234 154 LCSGDV 159 (375)
Q Consensus 154 ~~~g~~ 159 (375)
...++.
T Consensus 434 ~e~~~l 439 (846)
T KOG2066|consen 434 AELDQL 439 (846)
T ss_pred cccccc
Confidence 555443
No 381
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.44 E-value=57 Score=24.29 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCc-CHhHHHHHHHHHHcCCChH
Q 017234 84 SSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACLCSGDVV 160 (375)
Q Consensus 84 ~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 160 (375)
+.......++++.......... .|.......+..- +. .+.+..+|..|...|+-- ....|......+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-DL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-TT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-HH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 3445555666655555544322 3444444444333 22 227888888888777644 3556777788888888888
Q ss_pred HHHHHHHH
Q 017234 161 TALSLFEI 168 (375)
Q Consensus 161 ~a~~~~~~ 168 (375)
+|.++|+.
T Consensus 117 ~A~~I~~~ 124 (126)
T PF08311_consen 117 KADEIYQL 124 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888864
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.40 E-value=41 Score=23.40 Aligned_cols=24 Identities=4% Similarity=-0.015 Sum_probs=15.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 327 IIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+.......|++++|...+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667777777777776653
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.21 E-value=98 Score=26.94 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=111.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc------CC-----ChHHHHHHHHHHHhCCCCCCChhcHH
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC------SG-----DVVTALSLFEIMVSSEEYKPNSKTYD 183 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~------~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ 183 (375)
+....+-=..+.-.+..++..+.-.+....+|...+.++.. .| ...+|+++|.-+.++.|- ..+-.
T Consensus 94 ~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk---~v~~~ 170 (361)
T COG3947 94 DDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK---EVTSW 170 (361)
T ss_pred HhhccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC---cccHh
Confidence 44555555556666666666655444556677777777762 12 135778888877774332 23334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH----HC----CCCcCHHhHHHHHHHHH-----ccCChHHHHHHHHHHHHCCCCCCHH
Q 017234 184 AFISGFSSLGNVDAMNKWYAANI----AA----GFSVNVQTYESLIHGSL-----KARDFDSVDRFYEEMMSLGIIPSIP 250 (375)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~~~m~----~~----~~~~~~~~~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~p~~~ 250 (375)
-++.++-...+..+|...+.... +. +.+ ..+++.. ..|. -.-++.+-+...+.+...+ .+..
T Consensus 171 ~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n-e~vts~d--~~Ykld~~~~k~Dv~e~es~~rqi~~in--ltid 245 (361)
T COG3947 171 EAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN-EAVTSQD--RKYKLDAGLPKYDVQEYESLARQIEAIN--LTID 245 (361)
T ss_pred HHHHHHccccchhhHHHHHHHHHHHHHHHhchhccC-ceEEEcC--CceEEecCCccccHHHHHHHhhhhhccc--cCHH
Confidence 56666666666666665554321 10 000 0000000 0000 0012222222222222221 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
.+..++..|- .+-+.++.-.|.+=....+ ..-..+++...+.|..+|.+.+|.++.++....+ |-..+. |-.++.
T Consensus 246 e~kelv~~yk-gdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~-nk~lm~ 321 (361)
T COG3947 246 ELKELVGQYK-GDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQD-NKGLMA 321 (361)
T ss_pred HHHHHHHHhc-CCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHH-HHHHHH
Confidence 3333333321 0111111111100000000 0112345556788999999999999999998854 433332 889999
Q ss_pred HHHhhCCHHHHHHHHHHHHh
Q 017234 330 LYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+...|+--.|.+-++++.+
T Consensus 322 ~la~~gD~is~~khyerya~ 341 (361)
T COG3947 322 SLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHhccchhhhhHHHHHHH
Confidence 99999998888888877754
No 384
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=95 Score=27.58 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=54.9
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHhccCChhHHHHHHHHHHH-----CCCCcCHh-HHHHHHHHH
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEA-----QGIKPDSA-VFNSLICAC 153 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~-~~~~li~~~ 153 (375)
+.++.++|++.++.+.++......|+...|.. ....+...|+...+.++++...+ .|++|+++ .|+.+-.-|
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 55678889988888788877777787776654 34455677888888888888776 57777554 455555544
Q ss_pred Hc-CCChH
Q 017234 154 LC-SGDVV 160 (375)
Q Consensus 154 ~~-~g~~~ 160 (375)
.+ .|++.
T Consensus 167 yk~~~d~a 174 (380)
T KOG2908|consen 167 YKKIGDFA 174 (380)
T ss_pred HHHHHhHH
Confidence 44 34443
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.69 E-value=1.1e+02 Score=31.15 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHccCCh--HHHHHHHHHHHHCCCCCCHHHHH--
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAG---FSVNVQTYESLIHGSLKARDF--DSVDRFYEEMMSLGIIPSIPILE-- 253 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~-- 253 (375)
-|..|+..|...|+.++|+++|.+..+.- -..-...+.-++..+.+.+.. +-+++.-+.............++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999987732 111123344456655555544 44444444443322111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--------hHHHHHH-----HHHH
Q 017234 254 ----------KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR--------VDELEEQ-----LETL 310 (375)
Q Consensus 254 ----------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~-----~~~~ 310 (375)
.-+-.|......+-+..+++.+....-.++....+.++..|++.=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1233455677788888999998877656788888888888875322 1122222 1111
Q ss_pred Hh--CCCCCchHH------HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 311 TK--CNQSPEVLL------HFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 311 ~~--~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+ ....|.... ..|....-.+.+.|+.++|+.++-....
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11 111111110 1133333335589999999988866654
No 386
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.59 E-value=24 Score=28.05 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHH---hccCChhHHHHHHHHHHHC-----CCCcCH-hHHHHHHHHHHcCC----C-------hHHH
Q 017234 103 GNESCLDEYACLIALS---GKVQNVPFAMHVFTSMEAQ-----GIKPDS-AVFNSLICACLCSG----D-------VVTA 162 (375)
Q Consensus 103 ~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~-----g~~p~~-~~~~~li~~~~~~g----~-------~~~a 162 (375)
.++.|...++..-.++ ++..+..++.+++++.... .+.|+. .++..+..+|...+ + +++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3455555555444444 3334434454555443321 234553 46666666665433 2 4556
Q ss_pred HHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 017234 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210 (375)
Q Consensus 163 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 210 (375)
.+.|++..+ ..|+..+|+.-+.... +|-++..++.+.+.
T Consensus 100 ~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 100 TEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 666666655 3688888887776653 35566666655543
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.32 E-value=2.8e+02 Score=31.84 Aligned_cols=64 Identities=8% Similarity=0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
..+|....+.....|+++.|...+-...+.+ .|.. +--..+.+...|+-..|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i----~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEI----VLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchH----HHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4678888888888999999988877766654 3333 45567778999999999999999886543
No 388
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.01 E-value=16 Score=18.02 Aligned_cols=26 Identities=8% Similarity=-0.035 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 66778888889999999999988765
No 389
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.83 E-value=52 Score=25.24 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=32.1
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 99 ~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
.+.+.|..-+.--..++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 11 ~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444443333344556666666555666666666666655555555555555555554
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.46 E-value=1.3e+02 Score=27.67 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=91.7
Q ss_pred HHHHhhcCCcchHHHHHHHhhhccCCCCcc---cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHH
Q 017234 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQF---SWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALS 118 (375)
Q Consensus 43 ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~-~~~~~~~~~li~~~ 118 (375)
.++..+..+..++. ..+.+.|..|+.. ..+.+..++..|+.+....+ ++.-.... ..+.. -.+.+...
T Consensus 38 pL~~A~~~~~~~~v---~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~~-g~tpL~~A 109 (413)
T PHA02875 38 PIKLAMKFRDSEAI---KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL----LDLGKFADDVFYKD-GMTPLHLA 109 (413)
T ss_pred HHHHHHHcCCHHHH---HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH----HHcCCcccccccCC-CCCHHHHH
Confidence 34444555655444 4444556655432 34556666888988776666 33211100 11111 12344445
Q ss_pred hccCChhHHHHHHHHHHHCCCCcCHhH--HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC---hhcHHHHHHHHHcCC
Q 017234 119 GKVQNVPFAMHVFTSMEAQGIKPDSAV--FNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLG 193 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~ll~~~~~~~ 193 (375)
+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-+..+++ .|..++ ..-.+.+..+ +..|
T Consensus 110 ~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-----~g~~~~~~d~~g~TpL~~A-~~~g 179 (413)
T PHA02875 110 TILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID-----HKACLDIEDCCGCTPLIIA-MAKG 179 (413)
T ss_pred HHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCCCCCCCCCHHHHH-HHcC
Confidence 5667764 4445556666654321 1234455567788765555443 333332 2233344433 4456
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHh---HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQT---YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 249 (375)
+.+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 180 ~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 180 DIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 643 5555677777765432 234555455667664 44455566766654
No 391
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.46 E-value=62 Score=24.07 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
+++.++|+.|...++....... |......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~f-Y~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALF-YEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHH-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHH-HHHHHHHHHHcCCHHHHHHHHHh
Confidence 3888899999888876655543 88888888899999999988875
No 392
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.54 E-value=1.6e+02 Score=28.38 Aligned_cols=304 Identities=11% Similarity=0.105 Sum_probs=155.5
Q ss_pred cccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcc-cHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHH
Q 017234 34 STSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQF-SWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110 (375)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~-~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~ 110 (375)
..+...++.||...-+.... .+..+++.+.. -.|... -|...... .+-|..+.+.++| ++-..+-+-+...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vf----ergv~aip~Svdl 115 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVF----ERGVQAIPLSVDL 115 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHhhhhHHHH
Confidence 44555666666554433332 33555555532 345443 34444445 6888888999994 4444444445555
Q ss_pred HHHHHHHH-hccCChhHHHHHHHHHHHC-CCC-cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 111 YACLIALS-GKVQNVPFAMHVFTSMEAQ-GIK-PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 111 ~~~li~~~-~~~~~~~~a~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
|...+.-+ ...|+.+...+.|+..... |.. .+...|...|.--...+++.....+|++..+ .|.. -|+..-.
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile----iP~~-~~~~~f~ 190 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE----IPLH-QLNRHFD 190 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh----hhhh-HhHHHHH
Confidence 55444433 3557777788888877654 322 2456788888888888889999999999987 2332 2222222
Q ss_pred HHH---cC------CCHHHHHHHHHHHHHC---------------CC----CcC---HHhHHHHHH-------HHHccCC
Q 017234 188 GFS---SL------GNVDAMNKWYAANIAA---------------GF----SVN---VQTYESLIH-------GSLKARD 229 (375)
Q Consensus 188 ~~~---~~------~~~~~a~~~~~~m~~~---------------~~----~~~---~~~~~~ll~-------~~~~~g~ 229 (375)
-|. +. -..+++.++-...... ++ .|. ....+.+-. ++...-.
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~ 270 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEE 270 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHh
Confidence 211 11 1122222222211110 00 000 001111111 1111112
Q ss_pred hHHHHHHHHHHHHC---CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 230 FDSVDRFYEEMMSL---GII----PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 230 ~~~a~~~~~~m~~~---~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
..+....|++-.+. .+. ++..+|..-+.--.+.|+.+.+.-+++...-. +..-...|-..++.....|+.+-
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhH
Confidence 22222222222221 122 23456777777777888888888888877532 12223345555555555577777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
|..++....+-..+....+..+.+.+ .-..|+++.|..+++...+.-
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC
Confidence 77766655443332222222244433 334567888888887777653
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.45 E-value=59 Score=23.44 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
.++|..+.+.+...+. ....+--+-+..+.+.|++++|
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555544432 1222333333444455555555
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.17 E-value=83 Score=30.23 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=78.0
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 017234 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176 (375)
Q Consensus 97 ~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 176 (375)
+-.|....-|--.+.|...-.+.-.|+...|.+.+.........-.-.....|.....+.|-.-+|..++.+... .. .
T Consensus 596 ~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~-~~-~ 673 (886)
T KOG4507|consen 596 FHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA-IN-S 673 (886)
T ss_pred HHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh-hc-c
Confidence 444444444544444443334445678888888877665432111223445566666777777788888877765 22 3
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
..+.++-.+.+++....++++|++.|++..+...+ +...-+.|...-|
T Consensus 674 sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 674 SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 44556777888888888888998888887776543 5565666555444
No 395
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.47 E-value=1.7e+02 Score=28.44 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=132.6
Q ss_pred CCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHH
Q 017234 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147 (375)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 147 (375)
.|....|..|+..++.-+.+.-.++ +.++.. .+ ...+..++++....|.......+.+.+....+. +...-.
T Consensus 307 ~~~~~~f~~lv~~lR~~~~e~l~~l----~~~~~~--~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~ 378 (574)
T smart00638 307 EPAAAKFLRLVRLLRTLSEEQLEQL----WRQLYE--KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQ 378 (574)
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHH----HHHHHh--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHH
Confidence 3567788888888888888888888 555543 11 678999999999999988888777777766544 333333
Q ss_pred HHHHHHHc--CCChHHHHHHHHHHHhCCCCCCCh-------hcHHHHHHHHHcCCCH------HHHHHHHHHHHHCCC-C
Q 017234 148 SLICACLC--SGDVVTALSLFEIMVSSEEYKPNS-------KTYDAFISGFSSLGNV------DAMNKWYAANIAAGF-S 211 (375)
Q Consensus 148 ~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~-~ 211 (375)
.+.....- .-.. +.++.+.++.+.....+.. .+|..++.-+|..... ++....+.+...... .
T Consensus 379 ~~~~~~~~~~~Pt~-~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 457 (574)
T smart00638 379 LLAVLPHTARYPTE-EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK 457 (574)
T ss_pred HHHHHHHhhhcCCH-HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc
Confidence 33333333 3333 4444444444424444543 5677888866665542 344444444332211 1
Q ss_pred cCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCCcCHHHHH
Q 017234 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--RKLDRVKSFLKFLLGG-GWKINENMAQ 288 (375)
Q Consensus 212 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~-~~~~~~~~~~ 288 (375)
-|..--...|.++...|....... +..........+...-...+.++.+. ...+.+..++-.+... +..+...+
T Consensus 458 ~~~~~~~~~LkaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRi-- 534 (574)
T smart00638 458 GDEEEIQLYLKALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRM-- 534 (574)
T ss_pred CCchheeeHHHhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHH--
Confidence 244445677899999998765544 33333322234455556666777644 4677777766666544 32233222
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHH
Q 017234 289 KLVKCYCEL-GRVDELEEQLETLT 311 (375)
Q Consensus 289 ~li~~~~~~-g~~~~a~~~~~~~~ 311 (375)
+-...+.+. -.......+.+.+.
T Consensus 535 aA~~~lm~t~P~~~~l~~ia~~l~ 558 (574)
T smart00638 535 AAVLVLMETKPSVALLQRIAELLN 558 (574)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh
Confidence 222222333 44444555554444
No 396
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.30 E-value=1.2e+02 Score=26.82 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCChhcHHHHHHHHHcCCC------------HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 176 KPNSKTYDAFISGFSSLGN------------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
+-|+.+|-.++..--..-. .+.-+.++++..+.++ -+....-.+|..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556777766654322211 2345566776666644 36666667777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 017234 244 GIIPSIPILEKVLEGLCA---RRKLDRVKSFLKFLL 276 (375)
Q Consensus 244 ~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~ 276 (375)
. +-+...|...+..... .-.++.+..+|.+.+
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3 2244556555554443 334666666666553
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.62 E-value=2e+02 Score=28.57 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=116.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
...+..+.+.+++....+.+.. .+.+...--....+....|+.++|....+.+.. .| ......++.++..+.+
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g-~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TG-KSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cC-CCCChHHHHHHHHHHH
Confidence 3445556667777766663211 134555555667778888998888888888876 33 3446678899999887
Q ss_pred CCCHHHHH--HHHHHHHHCC---------------------------------------CCcCHHhHHHHHHHHH--ccC
Q 017234 192 LGNVDAMN--KWYAANIAAG---------------------------------------FSVNVQTYESLIHGSL--KAR 228 (375)
Q Consensus 192 ~~~~~~a~--~~~~~m~~~~---------------------------------------~~~~~~~~~~ll~~~~--~~g 228 (375)
.|.+.... +=+......| +.|+...-..++.++. ...
T Consensus 176 ~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 176 SGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Confidence 66543211 1111111111 0011111111111111 122
Q ss_pred ChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 229 DFDSVDRFYEEMMSLG-IIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~-~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
+.+.|...+....... ..+.. .....+.......+...++...++...... .+......-++.-.+.++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444442221 11111 112222222222221334444444332221 244444555666668899999888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+..|......-.... -=+.+++...|+.++|...|+++..
T Consensus 334 ~i~~L~~~~~~~~rw~---YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 334 WLARLPMEAKEKDEWR---YWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhcCHhhccCHhhH---HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888866433333333 2356776778999999999988743
No 398
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.04 E-value=1.5e+02 Score=29.40 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHcc---------
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI-AAGFSVNVQTYESLIHGSLKA--------- 227 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~--------- 227 (375)
.+.+.+...+.+-+...++.....--.+=..|...|++++|++.--... .-.+.++...+.+++.-|...
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Q ss_pred CChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC-
Q 017234 228 RDFD-------SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR- 299 (375)
Q Consensus 228 g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 299 (375)
+..+ .-..++++|..+ ..+..-|-.+|.......+++...+. +.+....++ ..+.++..+....+
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~k--cl~d~e~~~aiGia~E~~rld~ie~A---il~~d~~~~--~~~yll~l~~s~v~~ 190 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQK--CLDDNEYKQAIGIAFETRRLDIIEEA---ILKSDSVIG--NLTYLLELLISLVNN 190 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHH--hhhhhHHHHHHhHHhhhhhHHHHHHH---hccccccch--HHHHHHHHHHHHHhh
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
-+--.++++.+.+.-..-.... |..+.++|.-..+.+.|.++++++.++.
T Consensus 191 ~efR~~vlr~lv~~y~~~~~PD--y~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 191 REFRNKVLRLLVKTYLKLPSPD--YFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred HHHHHHHHHHHHHHHccCCCCC--eeeeeeeeEEcCCHHHHHHHHHHHHhcc
No 399
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.98 E-value=1.7e+02 Score=27.69 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
++..+.++...+..|+..+......+.. ...|++..|+.++++...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 3445555555444566666666655543 355788888888877553
No 400
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.64 E-value=2e+02 Score=28.30 Aligned_cols=194 Identities=18% Similarity=0.147 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHH-HCCCCcC--HhHHHHHHHHHH-cCCChHHHHHHHHHHHhCCCCCCChh-
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPD--SAVFNSLICACL-CSGDVVTALSLFEIMVSSEEYKPNSK- 180 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~- 180 (375)
.+...|..+|.. |++.++... +..++|. ..++-.+...+. ...+++.|...+++... ..-+++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~-l~~~~~~~d 97 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAIL-LCERHRLTD 97 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccccchHH
Confidence 456667777665 455566555 3333443 234555666665 56678888888887765 21122221
Q ss_pred ----cHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcCHHhHHHH-HHHHHccCChHHHHHHHHHHHHCC---CCCC
Q 017234 181 ----TYDAFISGFSSLGNVDAMNKWYAANIAA----GFSVNVQTYESL-IHGSLKARDFDSVDRFYEEMMSLG---IIPS 248 (375)
Q Consensus 181 ----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~---~~p~ 248 (375)
+-..++..+.+.+... |....++..+. +..+-...|.-+ +..+...+++..|.+.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 1224455666665555 77777765543 122223334444 333333478888888888776531 2344
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCcCHHHHHHHHHHH--HHcCChHHHHHHHHHH
Q 017234 249 IPILEKVLEGLC--ARRKLDRVKSFLKFLLGGG---------WKINENMAQKLVKCY--CELGRVDELEEQLETL 310 (375)
Q Consensus 249 ~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~ 310 (375)
...+..++.+.. +.+..+.+.+.++++.... ..|-..++..+++.+ ...|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555544 4455666666666653321 123455666666554 4566766666655554
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.37 E-value=15 Score=27.55 Aligned_cols=30 Identities=7% Similarity=0.268 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 017234 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (375)
.|.-.+|..+|.+|.+.|-.|+. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd----W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD----WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc----HHHHHHH
Confidence 45556677777777777776665 5666544
No 402
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.12 E-value=68 Score=22.84 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=4.0
Q ss_pred CCChHHHHHH
Q 017234 156 SGDVVTALSL 165 (375)
Q Consensus 156 ~g~~~~a~~~ 165 (375)
.|++++|..+
T Consensus 52 rG~Yq~Al~l 61 (115)
T TIGR02508 52 RGDYQSALQL 61 (115)
T ss_pred cchHHHHHHh
Confidence 3444444333
No 403
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.03 E-value=31 Score=33.45 Aligned_cols=85 Identities=9% Similarity=-0.077 Sum_probs=32.6
Q ss_pred cCCCHHHHHHHHHHHHHCC-----------CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAG-----------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 259 (375)
..+-|+-|..++....+.| +-.+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+
T Consensus 371 ~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 4455666666655443333 222444455566666666666666666655543311 123355555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 017234 260 CARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~ 277 (375)
.+.|+...+..+-+.+.+
T Consensus 449 ~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp H-----------------
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666655555555443
No 404
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.82 E-value=73 Score=25.15 Aligned_cols=48 Identities=8% Similarity=-0.028 Sum_probs=23.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (375)
-..++..+...++.-.|.++++.+.+.+..++..|...-|+.+.+.|-
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444444444445555555555555544455544444455555443
No 405
>PRK09687 putative lyase; Provisional
Probab=55.39 E-value=1.4e+02 Score=25.90 Aligned_cols=219 Identities=7% Similarity=-0.082 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh----HHHHHHHHHHHhCCCCCCChhc
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV----VTALSLFEIMVSSEEYKPNSKT 181 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~ 181 (375)
+|..+....+..+...|.. .+...+..+.. .+|...-...+.++...|+. +++...+..+.. . .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~-~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL-E--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh-c--CCCHHH
Confidence 4566666667777666653 33333333433 23555556666666666653 456777766632 1 466666
Q ss_pred HHHHHHHHHcCCCH-----HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017234 182 YDAFISGFSSLGNV-----DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256 (375)
Q Consensus 182 ~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (375)
-...+.+++..+.. ..+.+.+..... .++..+-...+.++.+.|+ +++...+-.+.. .+|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 55666665554321 223333333222 3466666677777777776 345555555554 34445555566
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC
Q 017234 257 EGLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (375)
Q Consensus 257 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (375)
.++.+.+ +.+.+...+..+.. .+|..+-...+.++.+.|+.. +...+-...+.+. . ....+.++...|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~---~----~~~a~~ALg~ig 249 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT---V----GDLIIEAAGELG 249 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc---h----HHHHHHHHHhcC
Confidence 6666543 23456666666653 346777777788888888744 4444433333221 1 335677778888
Q ss_pred CHHHHHHHHHHHHhC
Q 017234 336 RLDDVEYSVGRMGKQ 350 (375)
Q Consensus 336 ~~~~A~~~~~~m~~~ 350 (375)
.. +|+..+.++.+.
T Consensus 250 ~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 250 DK-TLLPVLDTLLYK 263 (280)
T ss_pred CH-hHHHHHHHHHhh
Confidence 84 688888887764
No 406
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.33 E-value=2.1e+02 Score=27.85 Aligned_cols=214 Identities=10% Similarity=0.072 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+....|..++..+. .=+.+.-.++++++... + ...+..++++....|......-+.+.+.. ..+ ++...-..+
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~-~~~-~~~ea~~~~ 380 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKN-KKI-TPLEAAQLL 380 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCC-CHHHHHHHH
Confidence 45667777777764 44667778888887641 1 67889999999999998877777777776 444 333333334
Q ss_pred HHHHHc--CCCHHHHHHHHHHHHH-CCCCcC-------HHhHHHHHHHHHccCCh------HHHHHHHHHHHHCCC-CCC
Q 017234 186 ISGFSS--LGNVDAMNKWYAANIA-AGFSVN-------VQTYESLIHGSLKARDF------DSVDRFYEEMMSLGI-IPS 248 (375)
Q Consensus 186 l~~~~~--~~~~~~a~~~~~~m~~-~~~~~~-------~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~-~p~ 248 (375)
..+... .-..+ .++.+.++.+ ..+.+. ..+|..++.-+|..... ++....+.+...... .-|
T Consensus 381 ~~~~~~~~~Pt~~-~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 381 AVLPHTARYPTEE-ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHhhhcCCHH-HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 333333 33443 4444444443 334443 46788888877766542 344444443332211 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc--CChHHHHHHHHHHH-hCCCCCchHHHHHH
Q 017234 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL--GRVDELEEQLETLT-KCNQSPEVLLHFFS 325 (375)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~-~~~~~~~~~~~~~~ 325 (375)
..--...+.+++..|....... +..........+...-...+.++.+. ...+.+..++-.+- ..+..+..+...|.
T Consensus 460 ~~~~~~~LkaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~ 538 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVL 538 (574)
T ss_pred chheeeHHHhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 3344667888888998655544 44444433345556666667777644 45667776655543 33444555543344
Q ss_pred HHH
Q 017234 326 GII 328 (375)
Q Consensus 326 ~li 328 (375)
.++
T Consensus 539 ~lm 541 (574)
T smart00638 539 VLM 541 (574)
T ss_pred HHH
Confidence 433
No 407
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.85 E-value=2.1e+02 Score=27.41 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 208 (375)
...++.-|.+.+++++|..++..|. .+..+.. .+.+.+.+...+..--++.+..++.....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn--W~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN--WNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--ccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3456677888888888888888775 2222211 22334455555555445555555555443
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.79 E-value=97 Score=27.13 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----------cCChHHH
Q 017234 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----------LGRVDEL 303 (375)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 303 (375)
.++|+.|++.++.|.-..+..+.-.+.+.=.+..+..+|+.+.... .-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678888899999999998888888888888999999999987643 226666666653 4555555
Q ss_pred HHHHH
Q 017234 304 EEQLE 308 (375)
Q Consensus 304 ~~~~~ 308 (375)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 409
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.77 E-value=1.4e+02 Score=25.26 Aligned_cols=140 Identities=14% Similarity=0.192 Sum_probs=86.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
+....+..|++.-++..|-...+++.+ | .--.+.+--|.+..+..--.++.+-... .+++-+.....+++ +
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----P--IQSRCAiLRysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----P--IQSRCAILRYSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----h--HHhhhHhhhhcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhh--h
Confidence 345567778888888777766666553 1 1112233335555554444455555554 56666666666554 4
Q ss_pred HcCCCHHHHHHHHHHHHHC-C-----------CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAA-G-----------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (375)
...|+...|+..++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|..|.. ..+.+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FR 280 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFR 280 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHH
Confidence 5778888887777655322 1 2467777777777654 47899999999999999977753 3444544
Q ss_pred HHH
Q 017234 258 GLC 260 (375)
Q Consensus 258 ~~~ 260 (375)
.+-
T Consensus 281 v~K 283 (333)
T KOG0991|consen 281 VVK 283 (333)
T ss_pred HHH
Confidence 443
No 410
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.68 E-value=2.3e+02 Score=27.90 Aligned_cols=65 Identities=6% Similarity=0.019 Sum_probs=40.4
Q ss_pred CCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh-------hHHHHHHHHHHHC
Q 017234 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV-------PFAMHVFTSMEAQ 137 (375)
Q Consensus 69 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~~~ 137 (375)
.+...|-.+-.+.+.|..++|.++ ..............+-..+..|....+- +....-|++..+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~----~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEV----ANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHH----HHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHH----HHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 456678766666899999999999 5444444445566677888888765332 2344455555444
No 411
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=53.06 E-value=2.2e+02 Score=27.45 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=115.1
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--cCHHhHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS--VNVQTYES 219 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ 219 (375)
+..+|+.-++--.+.|+.+.+.-+|+...- .+..-...|--.+.-....|+.+.|..++..-.+-.++ |....+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 456788888888899999999999988864 22222334444444445558888888888776665443 33334444
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCcCHHHHHH----HH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVK---SFLKFLLGGGWKINENMAQK----LV 291 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~----li 291 (375)
.+. -..|++..|..+++.....- |+. ..-..-+....+.|+.+.+. .++....+.. -+..+... ..
T Consensus 374 ~f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFA 447 (577)
T ss_pred HHH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHH
Confidence 333 34579999999999998763 543 33333445566788888887 4444433322 22222222 22
Q ss_pred H-HHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC
Q 017234 292 K-CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (375)
Q Consensus 292 ~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (375)
+ -+.-.++.+.|..++.++.+. .|+..+. |..+++.....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~-~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI--LPDCKVL-YLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc--CCccHHH-HHHHHHHHHhCC
Confidence 2 234478899999999999874 3444333 777777776665
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.01 E-value=1.6e+02 Score=25.72 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=71.2
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCcCHH
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI----AAGFSVNVQ 215 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~ 215 (375)
+.|...+|.|+.- +..++++--+-.++..+..|-......+..+...|++.++.+.+.++..+.. ..|.+.|+.
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 3455555555541 1123334333444444433444455677788888888888888877766543 335555543
Q ss_pred hHHHHH-HHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 216 TYESLI-HGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 216 ~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
..-+-+ -.|....-+++-++..+.|.++|..-+. .+|.-+ .+....++.+|-.++-....
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 322222 1233333366777777888877643322 223222 22345567777777666543
No 413
>PRK09857 putative transposase; Provisional
Probab=52.75 E-value=1.6e+02 Score=25.76 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
+..++....+.|+.++..++++.+.+.. ...... .-++.+-+.+.|.-+++.++.++|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~--iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKES--LMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455555566777777777777776642 222222 345667777778778888999999999985
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.60 E-value=2.4e+02 Score=28.24 Aligned_cols=198 Identities=9% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCCCh---hcHHHHHHHHHcCCCHHHHHHH
Q 017234 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDV---VTALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGNVDAMNKW 201 (375)
Q Consensus 128 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~ 201 (375)
.++-+.++...+..+...-..+++-.-+..+. ++-..++.+|+. .--.|++ .+...++-.|....+++...++
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~-RlDnp~VL~~d~V~nlmlSyRDvQdY~amirL 223 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRT-RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRL 223 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHh-hcCCccccCHHHHHHHHhhhccccchHHHHHH
Q ss_pred HHHHHHCCCCcCH----------HhHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHH-------HHHHHHHhc
Q 017234 202 YAANIAAGFSVNV----------QTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILE-------KVLEGLCAR 262 (375)
Q Consensus 202 ~~~m~~~~~~~~~----------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~-------~li~~~~~~ 262 (375)
.+.++.. ||. ..|.-.++---+-|+-++|+.+.-.|.+. .+.||..... -+-+.|...
T Consensus 224 Ve~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa 300 (1226)
T KOG4279|consen 224 VEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDA 300 (1226)
T ss_pred HHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcch
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR-VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
+..+.|.++|++.-+ +.|+...--.+...+...|. ++...++-.--.. .++|+ .+.|..+...
T Consensus 301 ~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk-----------Ln~Ll---grKG~leklq 364 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMK-----------LNSLL---GRKGALEKLQ 364 (1226)
T ss_pred hhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHH-----------HHHHh---hccchHHHHH
Q ss_pred HHHH
Q 017234 342 YSVG 345 (375)
Q Consensus 342 ~~~~ 345 (375)
++++
T Consensus 365 ~YWd 368 (1226)
T KOG4279|consen 365 EYWD 368 (1226)
T ss_pred HHHh
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.38 E-value=55 Score=27.70 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAA----G-FSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
-.+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++...+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35556666777777777777665321 1 2334555666666667777777666555444
No 416
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.29 E-value=94 Score=24.53 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=27.0
Q ss_pred HHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 206 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
.+.|+.++.. -..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444443322 223333333344444555555555555544454444444455555443
No 417
>PRK10941 hypothetical protein; Provisional
Probab=52.11 E-value=1.6e+02 Score=25.46 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.+.+-.+|.+.++++.|.++.+.+... .|+.... +.--.-.|.+.|.+..|..=++...++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e-~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYE-IRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344555666777777777777777663 3433321 232333466677777777766666654
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.99 E-value=1e+02 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----CC-CCcCHHHHHHHHHHHHHcCChHHHHHH
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLG----GG-WKINENMAQKLVKCYCELGRVDELEEQ 306 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 306 (375)
+..-|.+.|++++|.++++.+.. .| ..+...+...+..++...|+.++...+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555555555554421 11 122333344444444445554444433
No 419
>PHA03100 ankyrin repeat protein; Provisional
Probab=50.90 E-value=2.2e+02 Score=26.76 Aligned_cols=26 Identities=0% Similarity=-0.227 Sum_probs=12.4
Q ss_pred HHHHhhcCCcchHHHHHHHhhhccCCCCc
Q 017234 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQ 71 (375)
Q Consensus 43 ll~~l~~~~~~~~~~~~~~m~~~~~~p~~ 71 (375)
.++..++.+..+ +++.+.+.|..|+.
T Consensus 38 ~L~~A~~~~~~~---ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 38 PLYLAKEARNID---VVKILLDNGADINS 63 (480)
T ss_pred hhhhhhccCCHH---HHHHHHHcCCCCCC
Confidence 344445555543 34444445666543
No 420
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=50.41 E-value=92 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=6.6
Q ss_pred HHHcCCChHHHHHHHHH
Q 017234 152 ACLCSGDVVTALSLFEI 168 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~ 168 (375)
.|...|+.++|..-+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33333444444444433
No 421
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.13 E-value=4.6e+02 Score=30.30 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=96.2
Q ss_pred HHHHHHhccCChhHHHHHHHHH----HHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSM----EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~ 188 (375)
++..+--+++.+.+|...+++- .+. .-...-|-.+...|...+++|....+...-.. .|+ ...-|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence 4555666788888888888773 221 11233445555588888998888888775222 232 2234445
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV-LEGLCARRKLDR 267 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~ 267 (375)
....|+++.|...|+.+.+.+.+ ...+++-++..-...|.++.+....+...... .+....++.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 67789999999999999887633 47777777777777788887777665555432 2333333333 334457777777
Q ss_pred HHHHHH
Q 017234 268 VKSFLK 273 (375)
Q Consensus 268 a~~~~~ 273 (375)
....+.
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 777665
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.97 E-value=43 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
.++.++..+++..-.+.+...+.++.+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444443
No 423
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=49.89 E-value=2.4e+02 Score=28.17 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
.++..+.+....+..|+..+......++... .|++..+..+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3455555555555456666666666665543 4777777777766554
No 424
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.22 E-value=3.1e+02 Score=28.01 Aligned_cols=169 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 228 (375)
..|...|+++.|+++ .+.+|+. .++..=...|.+.+++..|-+++.++ ...|..+.--+....
T Consensus 366 k~yLd~g~y~kAL~~-------ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEI-------ARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEIN 430 (911)
T ss_pred HHHHhcchHHHHHHh-------ccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcC
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHhcC-CHHHHHHHHHH---------HHhCCCCcCHHHHHH
Q 017234 229 DFDSVDRFYEEMMSLGIIPSIPI---------LEKVLEGLCARR-KLDRVKSFLKF---------LLGGGWKINENMAQK 289 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~p~~~~---------~~~li~~~~~~g-~~~~a~~~~~~---------~~~~~~~~~~~~~~~ 289 (375)
+.+ +++.|-.=+-..+.|...+ .+..+.-..... ..+++..-++. +......-+.....+
T Consensus 431 ~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
....+...|+.+.+..+-.-+.+ |..++.-+++.|.+++|.+++..
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d-----------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD-----------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
No 425
>PRK09857 putative transposase; Provisional
Probab=49.06 E-value=1.8e+02 Score=25.45 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=23.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 280 (375)
.++......++.++..++++.+.+. .+......-++..-+...|.-+++.++...|...|+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333444444444444444433 112222222333333333433334444444444443
No 426
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.97 E-value=2.6e+02 Score=27.17 Aligned_cols=175 Identities=10% Similarity=0.001 Sum_probs=68.9
Q ss_pred HHHHHHHhhhccCCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhH------H-
Q 017234 55 IKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF------A- 127 (375)
Q Consensus 55 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~------a- 127 (375)
...++....+.........+..++.++-.|+...+++.. ... ..|..+-..+...+...|-++. .
T Consensus 282 l~~~a~~~~~~~~~~~~~~~e~~~~~i~~~d~~~vL~~~----~~~----~~~~w~aahladLl~~~g~L~~~~~~~~~~ 353 (566)
T PF07575_consen 282 LHEYAQSCLEEFPPDSTNPLEQILLAIFEGDIESVLKEI----SSL----FDDWWFAAHLADLLEHKGLLEDSEQEDFGG 353 (566)
T ss_dssp HHHHHHHHHHHS---TTSTTHHHHHHHHTS--GGGHHHH----HHH------HHHHHHHHHHHHHHTTSS--SS-----T
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCHHHHHHHH----HHH----ccchhHHHHHHHHHHhcCcccccccccccc
Confidence 344444443332222233456667667788888888774 222 1233344455555555554441 0
Q ss_pred HHHHHHHH---HCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHH
Q 017234 128 MHVFTSME---AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204 (375)
Q Consensus 128 ~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 204 (375)
..+=+.+. ...+-.+...|..-+.-+...++.. ....+.+..+.. -.+...-.-++..|.+.|..+.|.++.+.
T Consensus 354 ~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p-~~t~~~~~k~l~iC~~~~L~~~a~~I~~~ 430 (566)
T PF07575_consen 354 SSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVP-LDTNDDAEKLLEICAELGLEDVAREICKI 430 (566)
T ss_dssp S-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCC-CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00000000 0000112233444343333333221 444444444211 12334456677778888888888888776
Q ss_pred HHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 205 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
+-..-. ...-|..-+..+.++|+...+..+-+.+.+
T Consensus 431 ~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 431 LGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655432 233466667777777777766666555554
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.66 E-value=1.2e+02 Score=29.63 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=19.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHC--CCCcCHhHHHHHHHHHHcCCC
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGD 158 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 158 (375)
+++.+|...|++..+.++++.+... |-+.-...||..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 4444555555555555555444422 111223334444444444444
No 428
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.60 E-value=1.5e+02 Score=25.88 Aligned_cols=23 Identities=17% Similarity=-0.068 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 017234 247 PSIPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~a~ 269 (375)
.|+..|..++.+|.-.|+.+.+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 45556666666666666544433
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.27 E-value=2.3e+02 Score=26.02 Aligned_cols=176 Identities=11% Similarity=0.020 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCC--CCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhC--------CCCCC
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQG--IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS--------EEYKP 177 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~~ 177 (375)
-..+.-+...|..+|+++.|++.+.+....- .+-....|-.+|..-.-.|+|.....+..+..+. ..+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567778888999999999999998865431 1224556777788888889888888887777662 01223
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCcCHHhHHHHHHHHHccCChHHHHHH-----HHHHHHCCCC
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAG------FSVNVQTYESLIHGSLKARDFDSVDRF-----YEEMMSLGII 246 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~-----~~~m~~~~~~ 246 (375)
-...+..+..... +++..|...|-...... +.|...+-...+.+++--++-+--+.+ |+...+ ..
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~ 305 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LE 305 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cC
Confidence 3333444433333 36666665554332221 234334444445555544443332222 222222 13
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCcCHHHHHHHH
Q 017234 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-----GWKINENMAQKLV 291 (375)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li 291 (375)
|. ... ++..++ .+++....++++++... -+.|.+.+.-.+|
T Consensus 306 Pq--lr~-il~~fy-~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 306 PQ--LRE-ILFKFY-SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred hH--HHH-HHHHHh-hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 33 233 333333 45677777777776543 2334555444444
No 430
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.26 E-value=1.9e+02 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=16.9
Q ss_pred CcCHHHHHHHHHHHHHcCChHHHH
Q 017234 281 KINENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 281 ~~~~~~~~~li~~~~~~g~~~~a~ 304 (375)
..|+..|..+..+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 467777888888887777655544
No 431
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.85 E-value=2.7e+02 Score=26.66 Aligned_cols=87 Identities=7% Similarity=0.008 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC------------cCHHhHHHHHHHHHc
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS------------VNVQTYESLIHGSLK 226 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~------------~~~~~~~~ll~~~~~ 226 (375)
.++..+++....+..|+..+......++.. ..|++..+...++.+...+-. +.......+++++ .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 345556665554446776666666666543 357888888777776544311 1222234445554 4
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 017234 227 ARDFDSVDRFYEEMMSLGIIPS 248 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~ 248 (375)
.++.++|+.+++++...|..|.
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 5888889999999888885543
No 432
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.35 E-value=1.7e+02 Score=28.74 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCC-CCCCChhcHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCcCHHhHHHH
Q 017234 148 SLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVD------AMNKWYAANIAAGFSVNVQTYESL 220 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 220 (375)
.++.+|..+|++..+.++++...... |-+.-...+|..|+.+.+.|.++ .|.+.+++. .+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 78999999999999999999888621 22223456888888888988764 333444333 345578888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE--GLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 275 (375)
+.+...--+-.-..-++.+..... .|-++. .|...=..++..-+++++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l 159 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQL 159 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhc
Confidence 877665333333334444444321 111222 223334456666666655
No 433
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.16 E-value=64 Score=23.30 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=30.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555556666777777777776666667666667777776654
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.05 E-value=1.2e+02 Score=22.54 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
++..++|..|...++....... |......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~Alf-Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALF-YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 4467889999888887655544 8888888889999999998886
No 435
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.83 E-value=1.8e+02 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=12.4
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
++.++...|+.+.|..+++.+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 5555555566666666555543
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.66 E-value=99 Score=21.33 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=5.8
Q ss_pred CChHHHHHHHHHHH
Q 017234 157 GDVVTALSLFEIMV 170 (375)
Q Consensus 157 g~~~~a~~~~~~m~ 170 (375)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 437
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.63 E-value=88 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=10.7
Q ss_pred HHHHHHccCChHHHHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m 240 (375)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455556666665555554
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.33 E-value=2.1e+02 Score=24.98 Aligned_cols=100 Identities=7% Similarity=0.019 Sum_probs=65.2
Q ss_pred CcCHHhHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 017234 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----LGIIPSIPIL-EKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285 (375)
Q Consensus 211 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 285 (375)
.-....+..+...|++.++.+.+.+..++..+ .|.+.|+... ..|...|....-.++..+..+.+.+.|...+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33567788899999999999999888776654 4666665322 223334445555777888888888888654332
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 286 ----MAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 286 ----~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+|.-+- +....++.+|-.++-+...
T Consensus 192 NRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 333222 2345678888888776553
No 439
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.18 E-value=65 Score=23.29 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33344444433333333333333333333333
No 440
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=45.16 E-value=2.7e+02 Score=30.11 Aligned_cols=149 Identities=12% Similarity=0.047 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 238 (375)
.+.|.++.+.++. . .+......++.-|.-..+-.-|+-.+.+..-+ -||..|-..||.==...|+|..-..
T Consensus 49 ~~~a~~l~~~~r~-~---~~~~~~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~h~~--- 119 (1208)
T PRK11905 49 RERARKLVEALRA-K---RKGTGVEALLQEYSLSSQEGVALMCLAEALLR--IPDTATRDALIRDKIAPGDWKSHLG--- 119 (1208)
T ss_pred HHHHHHHHHHHHc-C---CCcccHHHHHHhcCCCcHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhccCChhhhcC---
Confidence 3567777777775 2 21112677777777766666666666554443 3788888888877777777743211
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHH-----HHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 239 EMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENM-----AQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.....-.|..||..++.+-.- ..+-......+..+.++.-.|-... ...+-+-|+--...++|.+..+++.+
T Consensus 120 --~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~ 197 (1208)
T PRK11905 120 --GSKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEA 197 (1208)
T ss_pred --CCCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHh
Confidence 112334566788777765432 2222334456666655543332211 12233344555668888888888888
Q ss_pred CCCCCc
Q 017234 313 CNQSPE 318 (375)
Q Consensus 313 ~~~~~~ 318 (375)
.|+..+
T Consensus 198 ~G~~~s 203 (1208)
T PRK11905 198 RGYRYS 203 (1208)
T ss_pred CCCEEE
Confidence 877643
No 441
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.86 E-value=1e+02 Score=21.21 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 200 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
++|+-....|+..|+..|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666666655566666666666643
No 442
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.77 E-value=81 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=4.9
Q ss_pred CChHHHHHHHHHH
Q 017234 228 RDFDSVDRFYEEM 240 (375)
Q Consensus 228 g~~~~a~~~~~~m 240 (375)
|++=+|-++++++
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3344444444443
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.56 E-value=1.5e+02 Score=26.12 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 017234 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----------RRKLDRV 268 (375)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 268 (375)
.++++.|...++.|.-.++.-+.-.+...=.+.+++.+++.+... ..-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888888888888887777778888888888888888753 2235556655553 4777777
Q ss_pred HHHHHH
Q 017234 269 KSFLKF 274 (375)
Q Consensus 269 ~~~~~~ 274 (375)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 766643
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.53 E-value=90 Score=27.62 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=30.4
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCChhcH---HHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTY---DAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
+..+.|+..+|.+.++++.++ .|-...+ ..++.++....-+.+...++.+.-+..
T Consensus 284 CARklGrlrEA~K~~RDL~ke---~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE---FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344567777777777776652 2322222 256666666666655555555544433
No 445
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.29 E-value=3e+02 Score=26.42 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CcCHHhHHHHHHHHHccCC
Q 017234 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------------SVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 163 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~ll~~~~~~g~ 229 (375)
.+.+....+..|+..+......++.. ..|++..|..++++....|- .++......+++++.. |+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CC
Confidence 33333333324555555444444433 24666666666655443320 1122333334444333 66
Q ss_pred hHHHHHHHHHHHHCCCCCC
Q 017234 230 FDSVDRFYEEMMSLGIIPS 248 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~ 248 (375)
.+.+..++++|...|..|.
T Consensus 261 ~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 7777777777777765553
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.26 E-value=1.2e+02 Score=28.06 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+--.+-..++.|.....+...-+..+.|.+++..|-.+-+++++.
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel 329 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLEL 329 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 333334444555544444555555566666666666666666654
No 447
>PRK09687 putative lyase; Provisional
Probab=43.79 E-value=2.2e+02 Score=24.73 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=133.6
Q ss_pred CCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh----hHHHHHHHHHHHCCCCcCH
Q 017234 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV----PFAMHVFTSMEAQGIKPDS 143 (375)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~ 143 (375)
.+|.......+.++..-..+++... +..+.. -+|...-...+.++++.|+. ..+..++..+... .|+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL----AIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH----HHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 4444444445555322223444444 222322 23556666667777777763 4567777766443 4676
Q ss_pred hHHHHHHHHHHcCCCh-----HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 017234 144 AVFNSLICACLCSGDV-----VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 218 (375)
.+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ ..+...+-.+.+. +|..+-.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 7666677777665432 234444444443 3466666677788888877 4566666666653 5666666
Q ss_pred HHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 017234 219 SLIHGSLKAR-DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (375)
Q Consensus 219 ~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 297 (375)
..+.++...+ +-..+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 6677777654 24456666666664 45777788888899998884 5555555555543 2 234677888888
Q ss_pred CChHHHHHHHHHHHhCCC
Q 017234 298 GRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 298 g~~~~a~~~~~~~~~~~~ 315 (375)
|+. +|...+..+.+...
T Consensus 249 g~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CCH-hHHHHHHHHHhhCC
Confidence 885 68888888776443
No 448
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=43.11 E-value=1.1e+02 Score=20.95 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
.....+-......|+.+.|..+++.+. ++..- |..++.++...|...-|.
T Consensus 33 ~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~~~W------f~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 33 EDKERIQAAENNSGNIKAAWTLLDTLV-RRDNW------LEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCh------HHHHHHHHHHcCCHHHHH
Confidence 334444555556788888888888888 43322 778888888888766554
No 449
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.64 E-value=1.9e+02 Score=26.58 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--C----CC-cCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 254 KVLEGLCARRKLDRVKSFLKFLLGG--G----WK-INENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~--~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
.|++..+-.||+..|.++++.+.-. + +. -...++..+.-+|.-.+++.+|.+.|..+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777776655321 1 01 12234555566666666777776666543
No 450
>PRK12356 glutaminase; Reviewed
Probab=42.63 E-value=2.4e+02 Score=24.97 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=12.1
Q ss_pred hccCCCCcccHHHHHHH
Q 017234 64 IFAFNSSQFSWDALITS 80 (375)
Q Consensus 64 ~~~~~p~~~~~~~li~~ 80 (375)
+-|.+|+-..||++++.
T Consensus 91 ~VG~EPSG~~FNsi~~L 107 (319)
T PRK12356 91 KIGADPTGLPFNSVIAI 107 (319)
T ss_pred HhCCCCCCCCcchHHHh
Confidence 34678888888877654
No 451
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=42.60 E-value=3.1e+02 Score=26.24 Aligned_cols=85 Identities=9% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC------C----------CcCHHhHHHHHHHH
Q 017234 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG------F----------SVNVQTYESLIHGS 224 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~----------~~~~~~~~~ll~~~ 224 (375)
+..++++...+..|+..+......+... ..|++..|...++++...+ + .++....-.++++.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444443334555555444444432 3456666666665553221 1 01222223333433
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC
Q 017234 225 LKARDFDSVDRFYEEMMSLGIIPS 248 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~ 248 (375)
. .|+.++|+.+++++...|..|.
T Consensus 269 ~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 269 I-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3 3667777777777776665543
No 452
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.58 E-value=1.1e+02 Score=20.92 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
+..++..+.+.|+ .+......+- +.....+.+.++++.+..+|... |..+..++...|+..-|
T Consensus 18 ~~~v~~~L~~~~V-lt~~~~e~I~---~~~tr~~q~~~LLd~L~~RG~~A------F~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV-FTPDMIEEIQ---AAGSRRDQARQLLIDLETRGKQA------FPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCCHHHHHHHHHHHHHhcCHHH------HHHHHHHHHhcCchHHH
Confidence 3446666777663 2333222222 24455777888888888777433 67777777776665443
No 453
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.36 E-value=59 Score=23.74 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
..++....+.+..-.|.++++.+.+.|...+..|.-.-|+.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 455666666666777777777777777666766666666666666643
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.35 E-value=2.2e+02 Score=24.37 Aligned_cols=82 Identities=7% Similarity=0.079 Sum_probs=39.4
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (375)
++.....+...|.+.|++.+|...|- .|-.++...+..++.-....|...++ |. -....+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl----~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dl-fi~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL----LGTDPSAFAYVMLLEEWSTKGYPSEA--------------DL-FIARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH----TS-HHHHHHHHHHHHHHHHHTSS--H--------------HH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH----hcCChhHHHHHHHHHHHHHhcCCcch--------------hH-HHHHHHH
Confidence 34455566677777777777666552 12223333332333333333333332 11 1223333
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 017234 258 GLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~ 278 (375)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455677788888777666543
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.34 E-value=1.9e+02 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=26.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHH-HHHccCC--hHHHHHHHHHHHHC
Q 017234 188 GFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIH-GSLKARD--FDSVDRFYEEMMSL 243 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~-~~~~~g~--~~~a~~~~~~m~~~ 243 (375)
.....|++++|..-++++.+. .++.-...|..+.. +++..+. +-+|.-++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 344556666666665555332 11112233444444 4444443 44555555555443
No 456
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.30 E-value=1.5e+02 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444443334444333334444333
No 457
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.12 E-value=2.6e+02 Score=25.10 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH
Q 017234 264 KLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 321 (375)
-.+++..++..+.+. .|+. .-|-++++.....|.+++...+|++....|..|-...
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieEl 177 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEEL 177 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHH
Confidence 345666666666553 3443 2355566666666666666666666666666664443
No 458
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.98 E-value=81 Score=19.30 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=9.1
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 017234 293 CYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~ 312 (375)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444555555554444444
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.85 E-value=1.9e+02 Score=23.57 Aligned_cols=134 Identities=15% Similarity=0.123 Sum_probs=70.8
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVK 292 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~ 292 (375)
....+.++..+...|+++.|.++|.-+.+.. ..|... .|.-+.+++.+..+. ... .-++.++.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~~~~---~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRRGEQ---NSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcCCCc---chHHHHHHHHHH
Confidence 4567788888888999999999998888753 334321 134444443332211 111 34555555
Q ss_pred HHHHcCChHHHHHHH--HHHHhCC---CCCc-hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHH
Q 017234 293 CYCELGRVDELEEQL--ETLTKCN---QSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEME 363 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~--~~~~~~~---~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 363 (375)
.|...........-. .-.-..| ..|. ..+..|..++..-.+....+++.++.++|.+-=+.|.-.+...+.
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~ 181 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELW 181 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHH
Confidence 555433333221111 0000111 1121 122235566655545556677888888888876766655555543
No 460
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=41.28 E-value=1.4e+02 Score=21.83 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
+.+..+++.+.+.|.--|..-....+....+.+. .....+-.++.+.|+.+ .+....+. .....+.|..+.+.-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi~~--~~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGIDR--EIIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--H--HHHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCCCh--HHHHHHHH---HhhHHHHHHHHHHHH
Confidence 4566777777777765555444555555554222 23344556667777543 23333332 222233344444443
Q ss_pred HhCC-CCCchHHHHHHHHHHHHHhhCC-HHHHHHHH
Q 017234 311 TKCN-QSPEVLLHFFSGIIRLYALSDR-LDDVEYSV 344 (375)
Q Consensus 311 ~~~~-~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 344 (375)
.... ..++... ..-++..+.+.|- ++.+..++
T Consensus 83 ~~~~~~~~~~~~--~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 83 YRRYRKPSDRKR--KQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHHTTTS-CHHH--HHHHHHHHHHTT--HHHHHHHC
T ss_pred HhcccCCCCHHH--HHHHHHHHHHCCCCHHHHHHHH
Confidence 3222 1222333 5555555666553 33444433
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.09 E-value=2e+02 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHH
Q 017234 324 FSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~ 345 (375)
-|.....+.+.|.+|.|..+++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHh
Confidence 4555566666666666666665
No 462
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=40.64 E-value=2.8e+02 Score=25.08 Aligned_cols=42 Identities=5% Similarity=-0.127 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
|.-+++...... +-+...--.++..|...|-.+.|...|..+
T Consensus 202 Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 202 AIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444433 333344444555556666666666666554
No 463
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.15 E-value=60 Score=23.74 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=17.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33333333334444444444444444444443333333333333
No 464
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.08 E-value=1.1e+02 Score=20.25 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3445555555554332 33566666666555443
No 465
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.02 E-value=1.7e+02 Score=22.39 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChH
Q 017234 238 EEMMSLGIIPSIPILEKVLEGLCAR-RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (375)
Q Consensus 238 ~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 301 (375)
+.+++.|.+++..=. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345667777665433 344455543 467789999999988876677777777778888877654
No 466
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.62 E-value=85 Score=20.23 Aligned_cols=33 Identities=3% Similarity=0.045 Sum_probs=15.1
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
|....++.++..+++..-.++++..+.+..+.|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444444444444444444444444444
No 467
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.48 E-value=98 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=21.6
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHH-HHHHHcCCCHHHHHHHHHHHHH
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAF-ISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~ 207 (375)
+.++++.|..++.+..+ ..||...|-.. -.++.+.+++..|+.=+....+
T Consensus 16 ~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 44445555555555544 23433332211 2444455555544444444443
No 468
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=3e+02 Score=24.70 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=32.6
Q ss_pred HHHHHHHHccCChHHHHHHHH----HHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 017234 218 ESLIHGSLKARDFDSVDRFYE----EMMSLGIIPSIPILEKV-LEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~----~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~ 276 (375)
.-++..|...+++.+|+.+.. ++++.+-++.......+ -.+|....++.+|..-+....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 456788888888888876654 44443323322222111 134555666666666665543
No 469
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.49 E-value=3.5e+02 Score=25.34 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=52.5
Q ss_pred HhccCChhHHHHHHHHHHHCCCCcCH---hHHHHHHHHHH-cCCChHHHHHHHHHHHhCCCCCCCh---hcHHHHHHHHH
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGIKPDS---AVFNSLICACL-CSGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISGFS 190 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~ll~~~~ 190 (375)
....|+.+- .+.+.+.|..++. ...+.+..+.. ..|+.+-+..++ + .|..++. ...+ .+...+
T Consensus 80 a~~~~~~~i----v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll----~-~g~~~~~~~~~g~t-~L~~A~ 149 (480)
T PHA03100 80 YNLTDVKEI----VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL----D-NGANVNIKNSDGEN-LLHLYL 149 (480)
T ss_pred HHhhchHHH----HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH----H-cCCCCCccCCCCCc-HHHHHH
Confidence 445555443 4444555554432 22333333332 666665444443 3 3444432 2233 344445
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQT--YESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 248 (375)
..|. .-.++.+.+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..++
T Consensus 150 ~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~----~Ll~~ga~~~ 203 (480)
T PHA03100 150 ESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIK----FLLDNGADIN 203 (480)
T ss_pred HcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHH----HHHHcCCCcc
Confidence 5552 12345555667776654322 123455556666655443 4444554443
No 470
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.23 E-value=1.6e+02 Score=21.32 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHH
Q 017234 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (375)
..++|..+.+.+...+. -....--+-+..+.+.|++++| +..-.. .-.||...|.+|- -.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35566666666665442 1222222333445566666666 111111 1234444444332 345666666666665
Q ss_pred HHHhC
Q 017234 309 TLTKC 313 (375)
Q Consensus 309 ~~~~~ 313 (375)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 471
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.99 E-value=1.3e+02 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (375)
+++....++...++|+.+++.|.+.| ..+...-+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 46666777777888888888888777 33444333333
No 472
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=36.09 E-value=1.4e+02 Score=20.48 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHcCChHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 017234 295 CELGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
...|+.+.|..+++.+.. .+..- |..++.++.+.|.-.-|
T Consensus 45 ~~~g~~~aa~~Ll~~L~~~r~~~w------f~~Fl~AL~~~g~~~la 85 (88)
T cd08812 45 RNKGNIAAAEELLDRLERCDKPGW------FQAFLDALRRTGNDDLA 85 (88)
T ss_pred hccChHHHHHHHHHHHHHhccCCc------HHHHHHHHHHcCCccHH
Confidence 344888888888888887 44332 77888888888875444
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.47 E-value=2.5e+02 Score=23.49 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHHH--HHHHHHHHHcCChHHHHHHHHHHHhCCCCCch
Q 017234 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMA--QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319 (375)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 319 (375)
+.++..-+|.|+--|.-...+.+|...|.. +.|+.| |..++ ..-|+.....|++++|......+...-+..+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 355666677777766666556666665543 445554 33333 34677789999999999999988765555554
Q ss_pred HHH---HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 320 LLH---FFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 320 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
... ..-.+|. ..+.|..++|++.++.=.
T Consensus 100 ~l~F~Lq~q~lIE-liR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIE-LIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHc
Confidence 332 1222222 477888999988886543
No 474
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.46 E-value=1.4e+02 Score=20.19 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 017234 75 DALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121 (375)
Q Consensus 75 ~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~ 121 (375)
..++..+.+++++++... +.++...|.+-......+.......
T Consensus 9 ~~i~~~~~~~~~~~~~~~----~~~l~~~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 9 EEILESCLNGDFKEARKK----LYELLVEGYSASDILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHTCHHHHHHH----HHHHHHTT--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCHHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 334444444455555555 3333333444444444444444433
No 475
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=35.43 E-value=44 Score=30.79 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CC---cCHHhHHHHHHHH---
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG------FS---VNVQTYESLIHGS--- 224 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~---~~~~~~~~ll~~~--- 224 (375)
+.+++-.++++.+.+ .| .+|. ...-++.|.+.++++.|.+..++-.+.| ++ .....+..++.+.
T Consensus 25 ~~~~e~~~~l~~l~~-~g-~~dv--l~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~P 100 (428)
T cd00245 25 PLLEEHIELLRTLQE-EG-AADV--LPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFP 100 (428)
T ss_pred CCHHHHHHHHHHHHh-cC-CCCe--eccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCC
Confidence 345666667777766 22 1222 3345667777777777777776654322 11 1233444444432
Q ss_pred --HccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH-------HHHHhCCCCcCHHHHHHHHH
Q 017234 225 --LKARDFDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFL-------KFLLGGGWKINENMAQKLVK 292 (375)
Q Consensus 225 --~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~-------~~~~~~~~~~~~~~~~~li~ 292 (375)
.++|- .++..+++-+...|+... ..+|+.- |.+.-.++++..-| ....+.|+..+..++..+..
T Consensus 101 lqvRhGt-~d~~~l~e~~~a~g~~a~egg~isy~~p---y~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~ 176 (428)
T cd00245 101 VQVRHGT-PDARLLAEIAIASGFDATEGGPISYNLP---YSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTG 176 (428)
T ss_pred EeeccCC-ccHHHHHHHHHHhCcccccccceeeccc---cCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCccc
Confidence 22332 345556666666554322 2333321 33333445554444 22245566656555554331
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCch
Q 017234 293 CYCELGRVDELEEQLETLTKCNQSPEV 319 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 319 (375)
.+ --.-+..|..+++.+...+...+.
T Consensus 177 ~l-~pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 177 TL-VPPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred Cc-CCcHHHHHHHHHHHHHHccCCCCE
Confidence 11 122244566666666666555544
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=3.1e+02 Score=26.92 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=67.3
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHH
Q 017234 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC--LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (375)
.||+--..++..++..+.+.|+..+.........+ ......+--.|.+..+.+.|.+++++..+.+ +.++.+---+.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 45555555677788888888753333222222111 4455667778888999999999999999875 23556666677
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 017234 151 CACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~ 171 (375)
.+....|..++|+........
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHh
Confidence 788888999999888776654
No 477
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.20 E-value=4.5e+02 Score=25.87 Aligned_cols=197 Identities=15% Similarity=0.090 Sum_probs=111.7
Q ss_pred cccchHHHHHHhhcCCcchHHHHHHHhh-hccCCCCcccHHH--HHHH-H-hcCChHHHHHHHHHHHHHhhcCCCCCH--
Q 017234 36 SVSSSNPLISRLLQVPVSQIKTTLDSVD-IFAFNSSQFSWDA--LITS-L-QSSSPKKAQLVLEWRLDKMLKGNESCL-- 108 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~~~~~~~~~m~-~~~~~p~~~~~~~--li~~-~-~~~~~~~a~~~~~~~~~~m~~~~~~~~-- 108 (375)
+...|..||..-.++ ++... +..+.|....... +... + ...+.+.|...+++.+....+.+..|.
T Consensus 29 ~l~~Y~kLI~~ai~C--------L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 29 QLKQYYKLIATAIKC--------LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred hHHHHHHHHHHHHHH--------HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 444566666544332 22222 4455665444443 3333 3 778899999998766665555443332
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHC----CCCcCHhHHHHH-HHHHHcCCChHHHHHHHHHHHhCCC--CCCChhc
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKPDSAVFNSL-ICACLCSGDVVTALSLFEIMVSSEE--YKPNSKT 181 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~ 181 (375)
..-..++..+.+.+... |...+++..+. +..+-...+.-+ +..+...++...|.+.++....... ..|...+
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 23345566676666655 88888876543 111222333333 3333344899999999998887432 2333444
Q ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHCCC---------CcCHHhHHHHHHHHH--ccCChHHHHHHHHHHH
Q 017234 182 YDAFISGFS--SLGNVDAMNKWYAANIAAGF---------SVNVQTYESLIHGSL--KARDFDSVDRFYEEMM 241 (375)
Q Consensus 182 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~---------~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~ 241 (375)
+-.++.+.. +.+..+++.+..+++..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555443 45556777777777643221 235667777776554 5677667766665553
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.59 E-value=1.5e+02 Score=20.35 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
++|+-....|+..|+.+|..+++.+.-+=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666666555556666666666654
No 479
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=33.92 E-value=5.9e+02 Score=27.11 Aligned_cols=150 Identities=17% Similarity=0.085 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 238 (375)
.+.|.++.+.++. . .........++.-|.-..+-.-|+-.+.+..-+ -||..|-..||.==...|+|..-..
T Consensus 47 ~~~a~~l~~~~r~-~--~~~~~~~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~h~~--- 118 (1038)
T PRK11904 47 TARATQLVEAVRA-K--KKKLGGIDAFLQEYSLSTEEGIALMCLAEALLR--IPDAATADALIRDKLSGADWKKHLG--- 118 (1038)
T ss_pred HHHHHHHHHHHHh-c--CCCCcHHHHHHHhcCCCchHHHHHHHHHHHhhc--CCCHHHHHHHHHHhcccCChhhhcC---
Confidence 3566677777765 2 122224566676666666555555555554443 3677777777776666666643211
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHhCCCCcCHHHH--H---HHHHHHHHcCChHHHHHHHHHH
Q 017234 239 EMMSLGIIPSIPILEKVLEGLCARR-K--LDRVKSFLKFLLGGGWKINENMA--Q---KLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~--~---~li~~~~~~g~~~~a~~~~~~~ 310 (375)
.....-.|..||..++.+-.-.- + -......+..+.+..-.|-.... . .+.+-|+--...++|.+..+++
T Consensus 119 --~~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~qFv~Geti~ea~~~~~~l 196 (1038)
T PRK11904 119 --RSDSLFVNASTWGLMLTGKVVKLDKKADGTPSGVLKRLVNRLGEPVIRKAMRQAMKIMGKQFVLGRTIEEALKRARSA 196 (1038)
T ss_pred --CCccceeeHHHHHHHHhheecCcccccCCCHHHHHHHHHHhcccHHHHHHHHHHHHHhcCEecCCCCHHHHHHHHHHH
Confidence 11123456677777776543221 1 12234455666554323321111 1 1222234445677888888888
Q ss_pred HhCCCCCc
Q 017234 311 TKCNQSPE 318 (375)
Q Consensus 311 ~~~~~~~~ 318 (375)
.+.|+..+
T Consensus 197 ~~~G~~~s 204 (1038)
T PRK11904 197 RNKGYRYS 204 (1038)
T ss_pred HhCCCEEE
Confidence 88777643
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.82 E-value=2.5e+02 Score=22.63 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCcC--HHH-----HHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 265 LDRVKSFLKFLLGGGWKIN--ENM-----AQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
++.|..+|+.+.+.--.|. ... -...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4556666666655421221 111 12234456666667777666666655
No 481
>PRK10941 hypothetical protein; Provisional
Probab=33.78 E-value=3.1e+02 Score=23.65 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIH 222 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~ 222 (375)
..+.+-.+|.+.++++.|+...+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345577788999999999999999987 3444 4456666667899999999999888877653 2345555555555
Q ss_pred HHHc
Q 017234 223 GSLK 226 (375)
Q Consensus 223 ~~~~ 226 (375)
....
T Consensus 260 ~l~~ 263 (269)
T PRK10941 260 SIEQ 263 (269)
T ss_pred HHhh
Confidence 4443
No 482
>COG0819 TenA Putative transcription activator [Transcription]
Probab=33.48 E-value=2.8e+02 Score=23.04 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=12.9
Q ss_pred HCCCCcCHHhHHHHHHHHHccCChHH
Q 017234 207 AAGFSVNVQTYESLIHGSLKARDFDS 232 (375)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~g~~~~ 232 (375)
+....|...+|+..|...+..|++.+
T Consensus 102 ~~~~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 102 KTEPSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred hcCCCchHHHHHHHHHHHHhcCCHHH
Confidence 33444455555555555555555443
No 483
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.42 E-value=5.6e+02 Score=26.43 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-C---CC----------cCHHhHHHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-G---FS----------VNVQTYESLIHGSL 225 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~---~~----------~~~~~~~~ll~~~~ 225 (375)
++..+++.+..+..|+..+......++.. ..|++..++..++++... + +. .+......++++..
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~--sgGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRA--GGGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44445555554435666666555555443 246777777777765532 1 10 11222223444443
Q ss_pred ccCChHHHHHHHHHHHHCCCC
Q 017234 226 KARDFDSVDRFYEEMMSLGII 246 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~ 246 (375)
.++...++.+++++.+.|..
T Consensus 260 -~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 260 -AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred -cCCHHHHHHHHHHHHHcCCC
Confidence 45666777777777766643
No 484
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.14 E-value=1.4e+02 Score=24.61 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHhcC
Q 017234 230 FDSVDRFYEEMMSLGI-------IPSIPILEKVLEGLCARR 263 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~-------~p~~~~~~~li~~~~~~g 263 (375)
.+.|..++.+|-...+ .-...-|..+..+|.+.|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 5566666666643321 123445667777777766
No 485
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.13 E-value=1.6e+02 Score=19.90 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhCCC
Q 017234 328 IRLYALSDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~ 352 (375)
++.+.++.-.++|+++++-|.++|-
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3334444555555555555555543
No 486
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.97 E-value=75 Score=15.98 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 017234 196 DAMNKWYAANI 206 (375)
Q Consensus 196 ~~a~~~~~~m~ 206 (375)
+.|..+|+++.
T Consensus 4 ~~~r~i~e~~l 14 (33)
T smart00386 4 ERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 487
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=31.87 E-value=4.7e+02 Score=25.11 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH--------------HHHc
Q 017234 127 AMHVFTSME-AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS--------------GFSS 191 (375)
Q Consensus 127 a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~--------------~~~~ 191 (375)
....++.+. +.|+.-+...+..+.+ ...|...+++.+++++.. .+- +..+...+.. ....
T Consensus 183 I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~-~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i~ 257 (515)
T COG2812 183 IAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIA-FGE--GEITLESVRDMLGLTDIEKLLSLLEAIL 257 (515)
T ss_pred HHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHH-ccC--CcccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444333 4566666666555544 446777777777777776 221 2222211111 1233
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNV 214 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~ 214 (375)
.++..+++..++++.+.|..|..
T Consensus 258 ~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 258 KGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred ccCHHHHHHHHHHHHHhCcCHHH
Confidence 46677777777777777765443
No 488
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.80 E-value=2e+02 Score=20.93 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=9.3
Q ss_pred HHccCChHHHHHHHHHHHHCC
Q 017234 224 SLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~ 244 (375)
+.++.-.++|+++++-|.+.|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 334444444444444444444
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.80 E-value=2.8e+02 Score=22.55 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=13.1
Q ss_pred HhhCCHHHHHHHHHHHHh
Q 017234 332 ALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~ 349 (375)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456788888887777764
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.57 E-value=4.2e+02 Score=24.48 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHC---CC-CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHH
Q 017234 123 NVPFAMHVFTSMEAQ---GI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~---g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 198 (375)
..++...++...... |+ ..+......++... .|+...++.+++.... . ...=..+..
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~-~----------------~~~It~~~v 212 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAAL-G----------------VDSITLELL 212 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH-c----------------cCCCCHHHH
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHH
Q 017234 199 NKWYAANIAAGFSVNVQTYESLIHGSLKA---RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-----KLDRVKS 270 (375)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~ 270 (375)
.+++.......-+ +......++.++.+. ++.+.|+..+..|.+.|..|....-..++.++-..| ....|..
T Consensus 213 ~~~~~~~~~~~d~-~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~ 291 (413)
T PRK13342 213 EEALQKRAARYDK-DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVA 291 (413)
T ss_pred HHHHhhhhhccCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHH
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.++....-|++-........+-.++.+-+-..+...++...+
T Consensus 292 ~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 292 AADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.50 E-value=4.1e+02 Score=24.31 Aligned_cols=26 Identities=4% Similarity=-0.258 Sum_probs=13.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcC
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVN 213 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (375)
.+.+.+++..|.++|+++.+..+++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34455555555555555555544333
No 492
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.47 E-value=3.3e+02 Score=23.27 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=43.7
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 292 (375)
|+.....+...|.+.|++.+|+.-|-. |-.|+...+..++......|...++ |.. ....+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlf-i~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEA--------------DLF-IARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--H--------------HHH-HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcch--------------hHH-HHHHHH
Confidence 677788888889999988888765521 1122222222233322223322222 222 223344
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 017234 293 CYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~ 313 (375)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 566778888888888776654
No 493
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.28 E-value=2.4e+02 Score=21.53 Aligned_cols=67 Identities=13% Similarity=-0.008 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 246 IPSIPILEKVLEGLCARR---KLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 246 ~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.++..+--.+..++.++. +..+...+++.+.+.. .|+ .....-|.-++.+.++++++.+..+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344455555555555554 3445556666666522 222 122333445566777777777777666663
No 494
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.21 E-value=3.4e+02 Score=23.32 Aligned_cols=199 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc----cCChHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDS 232 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 232 (375)
+.+..+...+..........-....-......-....+..+|.++|...-+.| .......|...|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHH--HHHHHHHHHHhCCCCcCHHHHHHHHHHH----HHcCChH
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCAR-----RKLD--RVKSFLKFLLGGGWKINENMAQKLVKCY----CELGRVD 301 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~ 301 (375)
|...|++.-+.|..+-..+...+-..|... -..+ .|...+.++-..+ +......+...| .-..+.+
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHH
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC---------------CHHHHHHHHHHHHhCCCCccCchhHHHHHHH
Q 017234 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD---------------RLDDVEYSVGRMGKQGLSFKSAEDVEMESWF 366 (375)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 366 (375)
+|...|....+.|. ... ...+- .+...| +...|...+......+...............
T Consensus 209 ~A~~wy~~Aa~~g~---~~a--~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (292)
T COG0790 209 KAFRWYKKAAEQGD---GAA--CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGL 282 (292)
T ss_pred HHHHHHHHHHHCCC---HHH--HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q ss_pred H
Q 017234 367 I 367 (375)
Q Consensus 367 ~ 367 (375)
.
T Consensus 283 ~ 283 (292)
T COG0790 283 S 283 (292)
T ss_pred h
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=31.11 E-value=2.5e+02 Score=24.71 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
...+...|.++.|...++........|......--.+.+.|...|..+-|..++.++.+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666677777777664333333434432233445566666777777766666554
No 496
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.01 E-value=3.8e+02 Score=23.72 Aligned_cols=69 Identities=4% Similarity=0.052 Sum_probs=37.0
Q ss_pred cCCCHHHHHHHHH-HHHHCCCCcCH----HhHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 191 SLGNVDAMNKWYA-ANIAAGFSVNV----QTYESLIHGSLKARDF-DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 191 ~~~~~~~a~~~~~-~m~~~~~~~~~----~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
+...+++.....+ +|.+.++ |++ ..|..++++---+++- --|.+.++.++ +|.-|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK---------~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLK---------QYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHH---------hhhHHHHHHhcCCh
Confidence 3334445444443 4555554 344 3466666554333221 12444444443 58888889998888
Q ss_pred HHHHH
Q 017234 265 LDRVK 269 (375)
Q Consensus 265 ~~~a~ 269 (375)
.+..+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76644
No 497
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=30.99 E-value=4.9e+02 Score=25.02 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH---------------HHH
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES---------------LIH 222 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~ 222 (375)
+.++....++.+....++.-+...+..+.. ...|-..++..+++++...|- +..+... ++.
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~ 254 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLE 254 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHH
Confidence 345667777777776788888777766654 577889999999999987752 2222222 222
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCH
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSI 249 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 249 (375)
....|+..+++..++++.+.|..|..
T Consensus 255 -~i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 255 -AILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred -HHHccCHHHHHHHHHHHHHhCcCHHH
Confidence 23457888888888888888866643
No 498
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.85 E-value=3e+02 Score=22.48 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=92.1
Q ss_pred CCCCcCHhHHHHHHHHHHcCC----ChHHHHHHHHHHHhCCCCCCChh----cHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 017234 137 QGIKPDSAVFNSLICACLCSG----DVVTALSLFEIMVSSEEYKPNSK----TYDAFISGFSSLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 137 ~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 208 (375)
.|..++...++-++..+.+.. +++-+..+=.+... .++.++-. ..-.=+..|-+.|||.+.-.+|-.....
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~-~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQA-RQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Confidence 577888999998888776654 44445555555544 33333322 2223355677888888877777655432
Q ss_pred CCCc-CHHhHHH-HHHHHHcc-C-ChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 209 GFSV-NVQTYES-LIHGSLKA-R-DFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 209 ~~~~-~~~~~~~-ll~~~~~~-g-~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
--.+ +...+.. +..++.+. + +..-=...|.+-.-.+...|. ..=-+++..|-+..+|.++.++++.|.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111111 11111111 0 111111112222212111111 1223566677788888999888888755
Q ss_pred CCC--------------CcCHHHHHHHHHHHHHcCChHHHHHHHH
Q 017234 278 GGW--------------KINENMAQKLVKCYCELGRVDELEEQLE 308 (375)
Q Consensus 278 ~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (375)
..+ .+--...|.-...+.+.|.+|.|..+++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 322 2344567778888899999999988875
No 499
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.75 E-value=6.5e+02 Score=26.41 Aligned_cols=225 Identities=15% Similarity=0.089 Sum_probs=108.7
Q ss_pred HHhhcCCC----CCHHHHHHHHHHHhccCChhHHHHHHHHHH-HCCC--CcCHhHHHHHHHHHHcC-CChHHHHHHHHHH
Q 017234 98 DKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGI--KPDSAVFNSLICACLCS-GDVVTALSLFEIM 169 (375)
Q Consensus 98 ~~m~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~--~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m 169 (375)
-+|.+++. |-.-+. ..++-+...+++.+|..+.++=+ ..++ .-++..|-.=+..+.+. ++.+---.++..+
T Consensus 681 LQmPRGNLEtI~PR~LVL-~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L 759 (928)
T PF04762_consen 681 LQMPRGNLETIYPRALVL-AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSL 759 (928)
T ss_pred EEcCCCchhhhccHhHHH-HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 35555553 333333 44556677888888876654322 1121 12344444445544443 5555555555555
Q ss_pred HhCCCCCCChhcHHHHH------------HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC--ChHHHHH
Q 017234 170 VSSEEYKPNSKTYDAFI------------SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR--DFDSVDR 235 (375)
Q Consensus 170 ~~~~~~~~~~~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~ 235 (375)
.+ +. .+...|.... ......++.....+.+.+..+.. .-...-...++.+|++.+ ++++|+.
T Consensus 760 ~~-ED--vt~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~ 835 (928)
T PF04762_consen 760 RN-ED--VTKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQ 835 (928)
T ss_pred cc-cc--ccccccccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHH
Confidence 54 21 1112222221 11122233444444443333211 223445677889999988 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 017234 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
...++++. +...-...+...+-. -.+.++|+.++.. -|.. -+++-|--.+.|+.+-.-.++++.+.
T Consensus 836 ~I~~l~~~----~~~~ae~alkyl~fL---vDvn~Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l-- 901 (928)
T PF04762_consen 836 LIKELREE----DPESAEEALKYLCFL---VDVNKLYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL-- 901 (928)
T ss_pred HHHHHHhc----ChHHHHHHHhHheee---ccHHHHHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--
Confidence 99999876 111111112111111 1222233333211 0111 12333444566777777777777763
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
.+...- | -|+ ...|++++|++-+.++
T Consensus 902 ~~~~rr--y--~ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 902 PPLYRR--Y--KID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred Chhhee--e--eHh--hhhCCHHHHHHHHHhh
Confidence 232222 2 233 3456888888776543
No 500
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=30.63 E-value=1.4e+02 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhCCCCCC
Q 017234 161 TALSLFEIMVSSEEYKP 177 (375)
Q Consensus 161 ~a~~~~~~m~~~~~~~~ 177 (375)
++.+.+.++...-|+.|
T Consensus 7 ~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 34444444444344444
Done!