Query 017234
Match_columns 375
No_of_seqs 408 out of 2772
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 11:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.5E-35 2.9E-39 269.9 24.2 200 97-297 13-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.4E-35 3.2E-39 269.6 24.0 207 125-334 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 6.9E-27 2.3E-31 223.5 33.7 240 106-351 303-546 (597)
4 2xpi_A Anaphase-promoting comp 100.0 6.8E-27 2.3E-31 223.6 30.5 303 40-358 275-585 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-21 5.7E-26 176.3 35.8 304 38-358 68-374 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.1E-21 2.1E-25 172.6 35.8 308 35-358 30-340 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2E-20 6.7E-25 172.4 33.6 312 35-364 24-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.8E-19 9.5E-24 164.7 32.2 268 70-350 25-324 (450)
9 3hym_B Cell division cycle pro 99.8 4.4E-18 1.5E-22 149.8 31.8 284 67-364 18-311 (330)
10 3ieg_A DNAJ homolog subfamily 99.8 4.3E-17 1.5E-21 144.9 35.9 307 39-360 5-343 (359)
11 3spa_A Mtrpol, DNA-directed RN 99.8 4.8E-21 1.6E-25 183.6 7.9 152 142-298 126-286 (1134)
12 4eqf_A PEX5-related protein; a 99.8 3.6E-18 1.2E-22 153.0 25.6 267 70-346 64-352 (365)
13 3cv0_A Peroxisome targeting si 99.8 6.4E-18 2.2E-22 148.5 26.0 269 70-348 20-313 (327)
14 3ieg_A DNAJ homolog subfamily 99.8 8.1E-17 2.8E-21 143.1 33.5 277 72-361 4-310 (359)
15 1fch_A Peroxisomal targeting s 99.8 1.2E-17 3.9E-22 149.6 27.8 268 70-346 63-355 (368)
16 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-20 5.9E-25 179.8 9.6 127 177-303 125-255 (1134)
17 2gw1_A Mitochondrial precursor 99.8 3.3E-17 1.1E-21 153.2 30.7 296 42-350 11-401 (514)
18 3hym_B Cell division cycle pro 99.8 7.3E-17 2.5E-21 141.9 30.6 293 33-338 18-322 (330)
19 2gw1_A Mitochondrial precursor 99.8 6.8E-17 2.3E-21 151.1 27.7 233 109-350 238-478 (514)
20 4eqf_A PEX5-related protein; a 99.8 2.5E-17 8.6E-22 147.4 20.9 238 106-350 63-310 (365)
21 1fch_A Peroxisomal targeting s 99.8 1.2E-16 4.2E-21 142.9 23.6 257 82-350 37-314 (368)
22 3mkr_A Coatomer subunit epsilo 99.8 7E-16 2.4E-20 133.6 27.3 259 81-362 10-274 (291)
23 3mkr_A Coatomer subunit epsilo 99.8 5.3E-16 1.8E-20 134.4 26.1 247 73-344 36-288 (291)
24 3fp2_A TPR repeat-containing p 99.7 1.1E-14 3.9E-19 136.9 33.7 242 110-362 245-501 (537)
25 3fp2_A TPR repeat-containing p 99.7 4.7E-15 1.6E-19 139.5 31.1 298 38-350 26-407 (537)
26 3cv0_A Peroxisome targeting si 99.7 1.9E-15 6.6E-20 132.6 24.6 265 36-310 20-312 (327)
27 3uq3_A Heat shock protein STI1 99.7 5E-15 1.7E-19 125.3 23.2 227 108-350 5-236 (258)
28 2pl2_A Hypothetical conserved 99.7 4.8E-15 1.6E-19 122.7 21.0 201 140-349 2-213 (217)
29 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.6E-21 142.8 11.5 233 54-334 21-254 (449)
30 3u4t_A TPR repeat-containing p 99.7 3.4E-14 1.2E-18 121.4 24.7 248 108-362 3-260 (272)
31 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.8E-19 120.4 20.4 199 106-311 3-212 (217)
32 3uq3_A Heat shock protein STI1 99.7 2.6E-14 8.9E-19 120.8 23.0 224 72-313 6-236 (258)
33 1b89_A Protein (clathrin heavy 99.7 8.2E-16 2.8E-20 137.1 14.0 258 38-344 33-292 (449)
34 1ouv_A Conserved hypothetical 99.7 5.2E-13 1.8E-17 114.3 31.1 225 107-352 5-253 (273)
35 2vq2_A PILW, putative fimbrial 99.7 1.2E-13 4.1E-18 114.2 25.4 203 142-350 7-211 (225)
36 2ho1_A Type 4 fimbrial biogene 99.7 1.3E-13 4.6E-18 116.3 26.0 200 144-350 38-238 (252)
37 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-13 5.2E-18 116.0 26.3 202 108-314 37-239 (252)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-15 1.8E-19 126.6 17.2 246 82-344 17-269 (275)
39 2vq2_A PILW, putative fimbrial 99.6 2.9E-13 9.8E-18 111.8 25.5 205 106-314 6-212 (225)
40 2q7f_A YRRB protein; TPR, prot 99.6 5E-14 1.7E-18 118.1 19.7 200 107-312 22-221 (243)
41 3u4t_A TPR repeat-containing p 99.6 1.7E-13 5.9E-18 117.0 22.6 238 74-321 6-256 (272)
42 2q7f_A YRRB protein; TPR, prot 99.6 8.7E-14 3E-18 116.6 20.0 212 69-290 21-233 (243)
43 2h6f_A Protein farnesyltransfe 99.6 4.7E-13 1.6E-17 119.9 25.5 231 107-347 96-344 (382)
44 2h6f_A Protein farnesyltransfe 99.6 7.1E-13 2.4E-17 118.8 25.3 248 72-333 98-365 (382)
45 1ouv_A Conserved hypothetical 99.6 6.5E-12 2.2E-16 107.4 30.4 222 71-314 6-252 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.4E-13 1.2E-17 115.2 20.5 227 118-351 15-245 (275)
47 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.8E-16 108.1 28.7 209 99-312 41-269 (308)
48 2ond_A Cleavage stimulation fa 99.5 6.5E-12 2.2E-16 109.6 26.1 220 125-350 33-270 (308)
49 3sf4_A G-protein-signaling mod 99.5 3.7E-13 1.3E-17 121.6 18.9 273 74-350 12-336 (406)
50 3ro2_A PINS homolog, G-protein 99.5 8.8E-13 3E-17 115.6 19.2 266 81-350 16-332 (338)
51 2xm6_A Protein corresponding t 99.5 2.3E-10 7.9E-15 106.4 36.3 223 108-351 183-433 (490)
52 4a1s_A PINS, partner of inscut 99.5 4.2E-13 1.4E-17 121.8 17.1 267 81-351 59-373 (411)
53 2xm6_A Protein corresponding t 99.5 4E-10 1.4E-14 104.8 37.2 245 83-351 92-397 (490)
54 3nf1_A KLC 1, kinesin light ch 99.5 2.6E-13 8.9E-18 118.0 14.6 240 107-349 26-306 (311)
55 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.1E-17 121.3 19.5 203 98-307 92-315 (474)
56 3vtx_A MAMA; tetratricopeptide 99.5 8.1E-12 2.8E-16 100.0 21.6 167 178-350 4-170 (184)
57 4g1t_A Interferon-induced prot 99.5 4.6E-11 1.6E-15 110.4 28.8 272 70-350 50-363 (472)
58 3vtx_A MAMA; tetratricopeptide 99.5 8.7E-12 3E-16 99.9 20.7 166 142-312 4-169 (184)
59 4g1t_A Interferon-induced prot 99.5 2.3E-10 7.8E-15 105.7 33.1 308 37-350 51-401 (472)
60 2ooe_A Cleavage stimulation fa 99.5 1.8E-10 6.3E-15 108.2 32.3 148 197-350 304-454 (530)
61 4abn_A Tetratricopeptide repea 99.5 3.2E-12 1.1E-16 118.4 19.3 215 123-347 83-318 (474)
62 3ulq_A Response regulator aspa 99.4 2.4E-11 8.4E-16 109.3 21.8 234 113-350 108-368 (383)
63 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-12 4.1E-17 113.7 12.1 241 71-312 27-306 (311)
64 3sf4_A G-protein-signaling mod 99.4 1.4E-11 4.7E-16 111.3 19.1 296 41-337 13-363 (406)
65 2ooe_A Cleavage stimulation fa 99.4 4.8E-10 1.6E-14 105.4 29.8 300 36-350 12-420 (530)
66 3as5_A MAMA; tetratricopeptide 99.4 7.3E-11 2.5E-15 93.9 19.3 130 215-349 43-172 (186)
67 1xi4_A Clathrin heavy chain; a 99.4 8.2E-10 2.8E-14 110.2 30.0 205 106-348 1103-1307(1630)
68 3as5_A MAMA; tetratricopeptide 99.4 6.9E-11 2.4E-15 94.1 18.7 167 143-314 8-174 (186)
69 4a1s_A PINS, partner of inscut 99.4 1.7E-11 5.9E-16 111.1 16.9 268 44-313 55-372 (411)
70 3edt_B KLC 2, kinesin light ch 99.3 3.9E-11 1.3E-15 102.4 16.4 207 143-349 43-280 (283)
71 4gyw_A UDP-N-acetylglucosamine 99.3 6E-11 2E-15 114.6 19.3 165 143-312 9-173 (723)
72 3ro2_A PINS homolog, G-protein 99.3 3.2E-11 1.1E-15 105.6 16.0 269 45-313 13-332 (338)
73 4i17_A Hypothetical protein; T 99.3 5.1E-10 1.7E-14 92.8 22.0 205 141-362 5-219 (228)
74 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 98.1 25.2 266 81-349 25-321 (373)
75 4gyw_A UDP-N-acetylglucosamine 99.3 1.4E-10 4.7E-15 112.1 20.5 166 107-277 8-173 (723)
76 3edt_B KLC 2, kinesin light ch 99.3 5.1E-11 1.8E-15 101.7 15.1 230 82-312 13-280 (283)
77 3q15_A PSP28, response regulat 99.3 4.5E-10 1.5E-14 100.8 21.6 234 111-349 104-364 (378)
78 3ulq_A Response regulator aspa 99.3 2.8E-10 9.7E-15 102.3 19.9 229 81-312 114-367 (383)
79 4i17_A Hypothetical protein; T 99.3 1.4E-09 4.8E-14 90.1 21.3 200 106-320 5-214 (228)
80 1xi4_A Clathrin heavy chain; a 99.2 1.5E-08 5E-13 101.4 28.2 233 70-344 1104-1339(1630)
81 1hz4_A MALT regulatory protein 99.2 9E-09 3.1E-13 92.0 24.5 240 111-350 17-282 (373)
82 3q15_A PSP28, response regulat 99.2 3.4E-09 1.2E-13 95.0 20.9 228 81-312 112-364 (378)
83 2fo7_A Synthetic consensus TPR 99.2 2.2E-09 7.6E-14 80.2 16.4 24 325-348 107-130 (136)
84 3qky_A Outer membrane assembly 99.1 7.3E-09 2.5E-13 87.7 20.3 193 141-358 13-230 (261)
85 2fo7_A Synthetic consensus TPR 99.1 5E-09 1.7E-13 78.3 16.3 131 181-314 3-133 (136)
86 3qky_A Outer membrane assembly 99.1 4.8E-09 1.7E-13 88.8 17.9 191 105-315 12-226 (261)
87 1qqe_A Vesicular transport pro 99.1 3.1E-09 1.1E-13 91.7 16.5 194 115-310 44-266 (292)
88 1qqe_A Vesicular transport pro 99.1 4.2E-09 1.4E-13 90.9 17.0 210 123-349 32-268 (292)
89 3mv2_B Coatomer subunit epsilo 99.1 6E-08 2E-12 83.0 23.4 254 78-362 21-292 (310)
90 3mv2_B Coatomer subunit epsilo 99.1 2.6E-08 8.7E-13 85.2 20.8 184 127-320 85-287 (310)
91 3e4b_A ALGK; tetratricopeptide 99.1 3.3E-08 1.1E-12 90.8 22.7 225 109-352 142-389 (452)
92 3e4b_A ALGK; tetratricopeptide 99.1 3.6E-07 1.2E-11 83.9 29.2 156 181-351 178-352 (452)
93 2pzi_A Probable serine/threoni 99.0 5E-09 1.7E-13 101.3 15.7 174 154-336 402-583 (681)
94 3urz_A Uncharacterized protein 99.0 2.7E-08 9.1E-13 81.2 17.8 178 144-349 5-185 (208)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.1E-08 1.8E-12 80.5 19.6 190 142-351 3-214 (225)
96 2pzi_A Probable serine/threoni 99.0 2.2E-08 7.6E-13 96.8 19.4 173 119-299 402-583 (681)
97 3urz_A Uncharacterized protein 99.0 3E-08 1E-12 80.9 17.2 179 108-312 4-185 (208)
98 2r5s_A Uncharacterized protein 99.0 9.6E-09 3.3E-13 81.4 13.1 163 181-349 8-172 (176)
99 3qou_A Protein YBBN; thioredox 99.0 1.9E-08 6.4E-13 86.6 15.8 160 182-347 120-281 (287)
100 3rjv_A Putative SEL1 repeat pr 98.9 1.9E-07 6.6E-12 76.3 20.5 128 142-277 17-157 (212)
101 3dra_A Protein farnesyltransfe 98.9 2.2E-06 7.6E-11 73.8 27.3 218 124-349 49-286 (306)
102 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 93.5 17.6 157 156-317 2-161 (568)
103 2ifu_A Gamma-SNAP; membrane fu 98.9 7.2E-08 2.4E-12 83.8 18.2 130 181-311 78-222 (307)
104 3rjv_A Putative SEL1 repeat pr 98.9 4E-07 1.4E-11 74.4 21.6 178 160-352 3-199 (212)
105 2ifu_A Gamma-SNAP; membrane fu 98.9 4.9E-08 1.7E-12 84.8 17.0 199 121-348 4-222 (307)
106 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.9E-11 74.5 26.0 235 82-327 44-299 (306)
107 3u3w_A Transcriptional activat 98.9 4E-07 1.4E-11 78.4 22.2 162 149-310 81-263 (293)
108 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.1E-07 7.1E-12 76.8 19.6 186 107-316 3-216 (225)
109 2vsy_A XCC0866; transferase, g 98.9 4.9E-08 1.7E-12 92.5 17.5 154 121-279 2-158 (568)
110 4ga2_A E3 SUMO-protein ligase 98.9 9.6E-09 3.3E-13 79.1 10.4 108 192-302 10-117 (150)
111 3qou_A Protein YBBN; thioredox 98.9 7.2E-08 2.5E-12 82.9 16.2 164 142-310 116-281 (287)
112 4ga2_A E3 SUMO-protein ligase 98.9 1.2E-08 4E-13 78.7 9.8 138 155-298 9-148 (150)
113 4e6h_A MRNA 3'-END-processing 98.9 4.8E-07 1.6E-11 86.6 22.7 220 126-350 327-570 (679)
114 2r5s_A Uncharacterized protein 98.9 4.4E-08 1.5E-12 77.6 13.0 161 111-276 9-171 (176)
115 3u3w_A Transcriptional activat 98.8 3.1E-06 1.1E-10 72.8 25.3 209 130-349 33-265 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.3E-07 2.2E-11 72.9 18.3 128 145-278 8-150 (213)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.4E-07 1.9E-11 73.3 17.1 130 109-244 7-151 (213)
118 4e6h_A MRNA 3'-END-processing 98.8 1.8E-06 6.3E-11 82.6 22.7 218 97-316 332-573 (679)
119 2qfc_A PLCR protein; TPR, HTH, 98.8 2.3E-06 8E-11 73.5 21.5 168 143-310 75-263 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 3.7E-06 1.3E-10 72.3 22.5 170 180-349 76-265 (293)
121 3gw4_A Uncharacterized protein 98.7 2.9E-07 1E-11 74.2 14.6 136 214-349 26-175 (203)
122 2c2l_A CHIP, carboxy terminus 98.7 5.2E-08 1.8E-12 83.5 10.3 195 142-350 3-199 (281)
123 1a17_A Serine/threonine protei 98.7 7.5E-07 2.6E-11 69.1 16.1 131 215-348 14-144 (166)
124 1a17_A Serine/threonine protei 98.7 7.5E-07 2.6E-11 69.1 15.7 127 181-310 15-143 (166)
125 1na0_A Designed protein CTPR3; 98.7 8.1E-07 2.8E-11 65.0 14.6 13 155-167 21-33 (125)
126 3q7a_A Farnesyltransferase alp 98.7 2.2E-05 7.4E-10 68.5 24.5 221 82-311 66-329 (349)
127 1na0_A Designed protein CTPR3; 98.6 1E-06 3.6E-11 64.4 14.1 95 181-277 11-105 (125)
128 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4E-11 64.8 14.2 10 227-236 59-68 (131)
129 4gco_A Protein STI-1; structur 98.6 1.2E-06 4.2E-11 64.9 13.9 21 149-169 19-39 (126)
130 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.8E-11 65.2 13.9 12 296-307 96-107 (133)
131 3gyz_A Chaperone protein IPGC; 98.6 1E-06 3.5E-11 67.6 13.4 95 145-242 38-132 (151)
132 3q7a_A Farnesyltransferase alp 98.6 5E-05 1.7E-09 66.2 25.4 231 112-350 58-331 (349)
133 2c2l_A CHIP, carboxy terminus 98.6 5.5E-07 1.9E-11 77.1 13.0 194 107-312 3-198 (281)
134 2vyi_A SGTA protein; chaperone 98.6 1E-06 3.5E-11 65.1 12.8 117 143-263 12-128 (131)
135 3gw4_A Uncharacterized protein 98.6 5.2E-07 1.8E-11 72.7 12.0 157 154-312 3-175 (203)
136 4gco_A Protein STI-1; structur 98.6 2E-06 6.7E-11 63.8 14.0 91 220-312 19-109 (126)
137 2lni_A Stress-induced-phosphop 98.6 2E-06 6.8E-11 63.8 14.2 118 178-298 15-132 (133)
138 4f3v_A ESX-1 secretion system 98.6 1.9E-06 6.4E-11 72.7 14.7 189 120-315 18-239 (282)
139 2e2e_A Formate-dependent nitri 98.6 1.6E-06 5.6E-11 68.3 13.7 118 192-312 23-143 (177)
140 2e2e_A Formate-dependent nitri 98.5 6.6E-07 2.3E-11 70.6 10.9 120 120-243 22-144 (177)
141 3gyz_A Chaperone protein IPGC; 98.5 3.9E-06 1.4E-10 64.3 14.9 95 216-312 38-132 (151)
142 4b4t_Q 26S proteasome regulato 98.5 7.1E-06 2.4E-10 74.5 19.3 167 182-348 58-243 (434)
143 1p5q_A FKBP52, FK506-binding p 98.5 2E-06 6.8E-11 75.6 15.0 142 157-303 127-283 (336)
144 2uy1_A Cleavage stimulation fa 98.5 0.00032 1.1E-08 64.8 29.9 124 216-349 288-412 (493)
145 2vgx_A Chaperone SYCD; alterna 98.5 8.5E-07 2.9E-11 67.9 10.6 97 214-312 21-117 (148)
146 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 8.8E-11 74.9 15.0 148 122-276 127-292 (336)
147 2vgx_A Chaperone SYCD; alterna 98.5 1.4E-06 4.7E-11 66.7 11.2 95 181-277 23-117 (148)
148 1elw_A TPR1-domain of HOP; HOP 98.5 1E-05 3.4E-10 58.3 14.7 21 290-310 78-98 (118)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 4.2E-07 1.4E-11 73.3 7.7 98 250-351 89-187 (198)
150 2fbn_A 70 kDa peptidylprolyl i 98.4 4.1E-07 1.4E-11 73.3 7.4 127 182-310 41-183 (198)
151 4f3v_A ESX-1 secretion system 98.4 5.3E-06 1.8E-10 70.0 14.2 189 155-350 18-237 (282)
152 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.5E-10 57.7 14.2 93 146-241 7-99 (118)
153 3dss_A Geranylgeranyl transfer 98.4 0.0005 1.7E-08 59.6 26.0 170 82-260 41-238 (331)
154 2kck_A TPR repeat; tetratricop 98.4 6E-06 2E-10 59.0 12.1 13 226-238 18-30 (112)
155 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.5E-10 59.0 13.6 17 221-237 45-61 (126)
156 2kck_A TPR repeat; tetratricop 98.3 1.1E-05 3.7E-10 57.6 12.5 97 144-242 7-105 (112)
157 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.1E-10 58.7 13.6 95 216-312 6-100 (126)
158 3dss_A Geranylgeranyl transfer 98.3 0.00029 9.9E-09 61.0 23.1 221 119-350 40-304 (331)
159 2dba_A Smooth muscle cell asso 98.3 2.3E-05 7.7E-10 59.2 14.6 96 143-242 28-127 (148)
160 4gcn_A Protein STI-1; structur 98.3 1.2E-05 3.9E-10 59.7 12.4 56 184-240 13-68 (127)
161 4b4t_Q 26S proteasome regulato 98.3 3.3E-05 1.1E-09 70.1 17.6 131 111-241 58-202 (434)
162 1elr_A TPR2A-domain of HOP; HO 98.3 7.2E-06 2.5E-10 60.4 10.9 19 151-169 12-30 (131)
163 3q49_B STIP1 homology and U bo 98.3 1.9E-05 6.5E-10 58.9 13.3 59 251-310 45-103 (137)
164 2xcb_A PCRH, regulatory protei 98.3 7.4E-06 2.5E-10 62.0 11.0 86 188-275 27-112 (142)
165 3ro3_A PINS homolog, G-protein 98.3 9.3E-06 3.2E-10 62.2 11.8 134 216-349 11-157 (164)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 1.8E-05 6.1E-10 61.4 13.4 95 181-277 13-107 (164)
167 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4E-10 59.2 11.5 95 217-312 7-107 (131)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 2.6E-05 8.8E-10 60.5 13.9 100 213-314 10-109 (164)
169 2xcb_A PCRH, regulatory protei 98.3 1.5E-05 5.1E-10 60.2 12.2 95 216-312 20-114 (142)
170 3q49_B STIP1 homology and U bo 98.3 2.7E-05 9.1E-10 58.1 13.6 96 179-276 9-104 (137)
171 4gcn_A Protein STI-1; structur 98.3 2.3E-05 7.7E-10 58.1 12.5 96 145-242 10-111 (127)
172 2dba_A Smooth muscle cell asso 98.3 4.8E-05 1.6E-09 57.3 14.8 112 106-222 26-141 (148)
173 2xev_A YBGF; tetratricopeptide 98.2 5.3E-05 1.8E-09 55.8 14.5 93 257-350 10-105 (129)
174 3ro3_A PINS homolog, G-protein 98.2 1.6E-05 5.3E-10 60.9 10.3 96 110-205 11-115 (164)
175 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.5E-10 57.0 10.8 24 217-240 54-77 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.8E-05 1.3E-09 70.5 14.0 88 250-341 318-405 (457)
177 3k9i_A BH0479 protein; putativ 98.1 1E-05 3.4E-10 58.9 8.1 85 262-349 3-89 (117)
178 1hxi_A PEX5, peroxisome target 98.1 2.9E-05 9.9E-10 56.9 10.6 94 146-242 20-113 (121)
179 2xev_A YBGF; tetratricopeptide 98.1 9.2E-05 3.2E-09 54.4 13.4 88 151-242 10-104 (129)
180 2uy1_A Cleavage stimulation fa 98.1 0.0031 1.1E-07 58.2 25.8 291 38-347 16-380 (493)
181 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.5E-10 73.9 9.8 117 189-308 16-134 (477)
182 1wao_1 Serine/threonine protei 98.1 1.7E-05 5.8E-10 73.2 10.5 123 218-345 10-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.6E-05 1.9E-09 69.3 13.7 90 214-305 317-406 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.0 6.5E-05 2.2E-09 66.8 13.0 88 250-341 274-361 (370)
185 3n71_A Histone lysine methyltr 98.0 6.4E-05 2.2E-09 69.2 13.2 128 223-350 318-464 (490)
186 1ihg_A Cyclophilin 40; ppiase 98.0 8E-05 2.7E-09 66.2 13.1 123 180-305 224-362 (370)
187 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6E-10 57.6 7.1 86 227-313 3-90 (117)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 3.3E-05 1.1E-09 67.8 9.5 149 179-350 179-328 (338)
189 3rkv_A Putative peptidylprolyl 97.9 0.00015 5E-09 56.0 12.2 62 250-312 64-125 (162)
190 3rkv_A Putative peptidylprolyl 97.9 9.7E-05 3.3E-09 57.0 10.7 65 213-278 62-126 (162)
191 3n71_A Histone lysine methyltr 97.9 8.5E-05 2.9E-09 68.3 11.1 126 188-313 318-464 (490)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 6.7E-05 2.3E-09 65.9 10.0 148 108-277 179-327 (338)
193 2hr2_A Hypothetical protein; a 97.8 0.00038 1.3E-08 53.1 12.3 97 253-350 15-131 (159)
194 2hr2_A Hypothetical protein; a 97.8 0.00022 7.5E-09 54.4 10.5 93 145-241 13-129 (159)
195 1klx_A Cysteine rich protein B 97.7 0.0027 9.2E-08 47.4 15.1 14 336-349 112-125 (138)
196 1dce_A Protein (RAB geranylger 97.7 0.002 6.9E-08 60.6 17.4 171 125-301 46-243 (567)
197 1klx_A Cysteine rich protein B 97.7 0.0019 6.4E-08 48.3 13.9 112 193-315 9-128 (138)
198 1dce_A Protein (RAB geranylger 97.7 0.0045 1.5E-07 58.2 19.5 176 155-339 40-244 (567)
199 2l6j_A TPR repeat-containing p 97.6 0.00047 1.6E-08 48.8 9.4 61 216-277 6-66 (111)
200 2kat_A Uncharacterized protein 97.6 0.00041 1.4E-08 49.8 8.6 78 233-312 4-81 (115)
201 2l6j_A TPR repeat-containing p 97.5 0.00038 1.3E-08 49.4 8.1 61 181-242 6-66 (111)
202 2kat_A Uncharacterized protein 97.5 0.00031 1E-08 50.5 7.4 74 97-171 8-81 (115)
203 1na3_A Designed protein CTPR2; 97.5 0.0015 5E-08 44.3 10.4 26 286-311 45-70 (91)
204 1na3_A Designed protein CTPR2; 97.5 0.0012 4.2E-08 44.7 9.9 21 149-169 15-35 (91)
205 3ma5_A Tetratricopeptide repea 97.3 0.00066 2.3E-08 47.5 6.8 64 107-171 6-69 (100)
206 1zu2_A Mitochondrial import re 97.1 0.0016 5.4E-08 49.6 7.6 53 266-321 63-126 (158)
207 3qwp_A SET and MYND domain-con 97.1 0.0089 3.1E-07 54.0 14.0 110 255-364 293-417 (429)
208 3ma5_A Tetratricopeptide repea 97.1 0.0024 8.3E-08 44.5 8.3 21 217-237 44-64 (100)
209 3qww_A SET and MYND domain-con 97.1 0.0036 1.2E-07 56.5 11.3 102 261-362 310-426 (433)
210 1zu2_A Mitochondrial import re 97.1 0.0011 3.8E-08 50.4 6.5 98 82-187 14-132 (158)
211 3mkq_A Coatomer beta'-subunit; 97.1 0.0056 1.9E-07 60.1 12.9 156 116-311 607-763 (814)
212 3mkq_A Coatomer beta'-subunit; 97.0 0.035 1.2E-06 54.4 18.3 102 111-240 632-733 (814)
213 3qww_A SET and MYND domain-con 96.9 0.0052 1.8E-07 55.5 10.2 61 145-205 342-408 (433)
214 3ly7_A Transcriptional activat 96.9 0.024 8.1E-07 49.5 13.7 63 213-277 276-338 (372)
215 3mkq_B Coatomer subunit alpha; 96.9 0.062 2.1E-06 41.4 14.5 129 187-347 13-141 (177)
216 3ly7_A Transcriptional activat 96.7 0.073 2.5E-06 46.4 15.3 74 176-253 274-347 (372)
217 3qwp_A SET and MYND domain-con 96.7 0.0078 2.7E-07 54.4 9.5 92 220-311 293-398 (429)
218 3mkq_B Coatomer subunit alpha; 96.4 0.22 7.6E-06 38.4 16.3 100 152-273 14-113 (177)
219 1pc2_A Mitochondria fission pr 96.4 0.063 2.2E-06 40.3 11.2 81 230-312 14-99 (152)
220 2kc7_A BFR218_protein; tetratr 96.4 0.034 1.2E-06 38.1 9.3 58 256-314 7-65 (99)
221 1pc2_A Mitochondria fission pr 96.3 0.089 3E-06 39.5 11.5 80 267-349 16-99 (152)
222 2kc7_A BFR218_protein; tetratr 96.0 0.047 1.6E-06 37.3 8.7 53 189-242 10-63 (99)
223 3bee_A Putative YFRE protein; 96.0 0.13 4.6E-06 35.0 10.6 66 282-350 4-72 (93)
224 3bee_A Putative YFRE protein; 96.0 0.16 5.4E-06 34.6 10.9 65 106-171 4-71 (93)
225 1wy6_A Hypothetical protein ST 95.9 0.33 1.1E-05 35.4 13.2 63 252-315 94-156 (172)
226 2v5f_A Prolyl 4-hydroxylase su 95.8 0.078 2.7E-06 37.0 8.9 65 143-207 5-74 (104)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.1 3.6E-06 36.3 9.6 65 248-312 4-74 (104)
228 4b4t_P 26S proteasome regulato 95.4 0.88 3E-05 41.1 16.8 53 122-174 30-87 (445)
229 1wy6_A Hypothetical protein ST 95.4 0.51 1.7E-05 34.5 14.0 146 74-245 8-156 (172)
230 3u64_A Protein TP_0956; tetrat 94.9 0.22 7.5E-06 41.8 10.2 110 143-255 154-283 (301)
231 3u64_A Protein TP_0956; tetrat 94.8 0.26 9E-06 41.3 10.3 65 250-316 200-272 (301)
232 4h7y_A Dual specificity protei 94.7 0.36 1.2E-05 35.9 9.5 58 261-319 72-129 (161)
233 1nzn_A CGI-135 protein, fissio 94.2 0.43 1.5E-05 34.4 9.0 81 230-312 17-102 (126)
234 3lvg_A Clathrin heavy chain 1; 93.9 0.0016 5.5E-08 58.4 -5.0 242 71-341 54-324 (624)
235 4h7y_A Dual specificity protei 93.6 0.74 2.5E-05 34.3 9.4 54 228-282 74-127 (161)
236 1nzn_A CGI-135 protein, fissio 92.9 1.9 6.4E-05 31.1 11.5 66 282-349 33-102 (126)
237 4ady_A RPN2, 26S proteasome re 92.9 8 0.00027 38.3 21.3 256 81-349 385-657 (963)
238 4gns_B Protein CSD3, chitin bi 92.8 2.1 7.2E-05 41.3 13.8 128 183-311 252-398 (754)
239 1qsa_A Protein (soluble lytic 92.7 6.7 0.00023 37.0 20.6 289 40-349 10-347 (618)
240 2ff4_A Probable regulatory pro 92.3 0.66 2.3E-05 41.1 9.2 69 182-251 174-247 (388)
241 4fhn_B Nucleoporin NUP120; pro 92.2 3.6 0.00012 42.1 15.6 53 113-170 817-869 (1139)
242 1v54_E Cytochrome C oxidase po 91.9 2.1 7.1E-05 29.3 9.7 66 261-329 21-87 (109)
243 4gns_B Protein CSD3, chitin bi 91.6 0.92 3.1E-05 43.7 9.8 127 217-348 251-398 (754)
244 4b4t_P 26S proteasome regulato 91.6 7.5 0.00026 35.0 18.7 56 81-136 27-84 (445)
245 2ff4_A Probable regulatory pro 91.1 1.1 3.7E-05 39.7 9.2 71 217-288 174-249 (388)
246 3txn_A 26S proteasome regulato 90.9 7.9 0.00027 34.1 17.3 167 143-310 19-207 (394)
247 1v54_E Cytochrome C oxidase po 90.1 3.3 0.00011 28.4 8.7 59 126-186 28-86 (109)
248 2y69_E Cytochrome C oxidase su 89.6 4.6 0.00016 29.3 9.7 63 264-329 68-130 (152)
249 4fhn_B Nucleoporin NUP120; pro 89.5 6.3 0.00022 40.4 14.4 147 184-340 817-990 (1139)
250 1wdy_A 2-5A-dependent ribonucl 89.4 0.71 2.4E-05 38.3 6.4 91 261-358 191-283 (285)
251 4b4t_R RPN7, 26S proteasome re 88.8 4.6 0.00016 36.2 11.5 98 215-312 132-236 (429)
252 3esl_A Checkpoint serine/threo 87.5 6.5 0.00022 30.8 10.0 56 262-317 92-148 (202)
253 1zbp_A Hypothetical protein VP 86.8 3.6 0.00012 33.9 8.6 116 221-350 4-129 (273)
254 2y69_E Cytochrome C oxidase su 86.6 6.6 0.00023 28.5 8.7 60 126-187 71-130 (152)
255 4b4t_R RPN7, 26S proteasome re 86.6 2.9 9.9E-05 37.5 8.8 137 230-366 110-253 (429)
256 3lvg_A Clathrin heavy chain 1; 86.1 0.054 1.9E-06 48.8 -2.6 218 68-304 80-324 (624)
257 3o48_A Mitochondria fission 1 85.9 8.1 0.00028 28.0 9.3 69 103-171 35-106 (134)
258 1k1a_A B-cell lymphoma 3-encod 85.6 3.1 0.00011 33.3 8.0 25 328-356 187-211 (241)
259 3ffl_A Anaphase-promoting comp 83.7 5.1 0.00017 30.3 7.5 60 146-205 23-89 (167)
260 2uwj_G Type III export protein 83.6 8.4 0.00029 26.3 7.6 78 194-279 21-98 (115)
261 2p58_C Putative type III secre 83.1 8.9 0.0003 26.2 8.3 78 194-279 22-99 (116)
262 1zbp_A Hypothetical protein VP 82.4 10 0.00035 31.3 9.4 115 187-312 5-128 (273)
263 4a1g_A Mitotic checkpoint seri 81.5 5 0.00017 29.9 6.6 53 301-354 82-134 (152)
264 3o48_A Mitochondria fission 1 80.9 14 0.00046 26.8 11.6 67 281-349 37-106 (134)
265 1n11_A Ankyrin; clathrin, BAND 79.9 9.9 0.00034 33.8 9.6 22 331-356 351-372 (437)
266 2wvi_A Mitotic checkpoint seri 79.6 6.3 0.00021 29.8 6.8 50 268-317 79-129 (164)
267 3ffl_A Anaphase-promoting comp 78.5 7.2 0.00024 29.5 6.7 29 285-313 123-151 (167)
268 3hra_A Ankyrin repeat family p 76.6 12 0.00042 28.7 8.3 13 234-246 158-170 (201)
269 3eu9_A Huntingtin-interacting 75.3 4.4 0.00015 32.3 5.4 21 328-348 214-234 (240)
270 3hra_A Ankyrin repeat family p 75.1 6.8 0.00023 30.2 6.4 17 76-92 8-24 (201)
271 3eiq_C Programmed cell death p 74.9 21 0.00073 30.9 9.7 64 287-353 220-285 (358)
272 1wdy_A 2-5A-dependent ribonucl 74.9 12 0.00042 30.5 8.3 208 42-273 7-240 (285)
273 2rfa_A Transient receptor pote 73.2 32 0.0011 27.0 10.2 20 73-92 37-56 (232)
274 2uwj_G Type III export protein 72.6 20 0.00068 24.5 7.1 31 177-209 68-98 (115)
275 4g8k_A 2-5A-dependent ribonucl 72.5 30 0.001 29.3 10.3 275 41-356 26-329 (337)
276 4aez_C MAD3, mitotic spindle c 71.4 24 0.00082 28.1 8.4 51 302-353 132-182 (223)
277 4ady_A RPN2, 26S proteasome re 71.2 86 0.0029 31.2 18.4 154 151-311 498-656 (963)
278 3mv2_A Coatomer subunit alpha; 70.7 44 0.0015 28.4 10.2 50 302-351 188-237 (325)
279 3ltm_A Alpha-REP4; protein eng 70.7 35 0.0012 26.4 16.8 17 283-299 156-172 (211)
280 1y8m_A FIS1; mitochondria, unk 70.0 30 0.001 25.4 13.3 67 246-312 36-105 (144)
281 3esl_A Checkpoint serine/threo 69.2 39 0.0013 26.4 10.5 57 227-283 92-149 (202)
282 3eu9_A Huntingtin-interacting 68.2 8.2 0.00028 30.6 5.5 14 295-308 218-231 (240)
283 3aji_A 26S proteasome non-ATPa 68.1 7.4 0.00025 30.8 5.1 19 115-133 10-28 (231)
284 4a1g_A Mitotic checkpoint seri 68.1 32 0.0011 25.6 8.0 50 268-317 84-134 (152)
285 1k1a_A B-cell lymphoma 3-encod 68.0 17 0.00058 28.8 7.4 18 75-92 11-28 (241)
286 2p58_C Putative type III secre 67.5 27 0.00091 23.9 8.0 18 191-208 81-98 (116)
287 2nsz_A Programmed cell death p 65.7 34 0.0012 24.5 7.9 24 218-241 11-34 (129)
288 3b7b_A Euchromatic histone-lys 65.0 14 0.00048 29.3 6.3 18 295-312 218-235 (237)
289 4g8k_A 2-5A-dependent ribonucl 64.7 48 0.0016 27.9 10.0 17 76-92 171-187 (337)
290 1n11_A Ankyrin; clathrin, BAND 64.5 28 0.00097 30.7 8.8 23 330-356 317-339 (437)
291 2zu6_B Programmed cell death p 62.9 34 0.0012 28.9 8.3 24 111-134 6-29 (307)
292 3ltj_A Alpharep-4; protein eng 62.1 51 0.0017 25.2 17.9 17 142-158 58-74 (201)
293 2d2s_A Exocyst complex compone 61.1 61 0.0021 26.1 9.2 27 283-309 90-116 (235)
294 3jxi_A Vanilloid receptor-rela 60.7 6 0.0002 32.2 3.3 19 120-138 14-32 (260)
295 3d5l_A Regulatory protein RECX 60.1 59 0.002 25.9 8.9 57 224-281 85-142 (221)
296 2d2s_A Exocyst complex compone 60.0 66 0.0023 25.9 9.2 88 150-240 25-117 (235)
297 3kea_A K1L; tropism, ANK repea 59.3 26 0.00089 28.9 7.1 81 219-309 163-243 (285)
298 3txn_A 26S proteasome regulato 59.3 92 0.0032 27.3 21.4 56 185-240 105-165 (394)
299 2wvi_A Mitotic checkpoint seri 59.0 55 0.0019 24.6 8.0 50 303-353 79-128 (164)
300 2ion_A PDCD4, programmed cell 58.9 31 0.0011 25.6 6.6 24 218-241 13-36 (152)
301 3aji_A 26S proteasome non-ATPa 58.8 54 0.0019 25.5 8.8 15 73-87 40-54 (231)
302 2xig_A Ferric uptake regulatio 57.9 49 0.0017 24.4 7.6 43 221-263 33-75 (150)
303 3t8k_A Uncharacterized protein 57.3 61 0.0021 24.6 8.6 19 195-213 90-108 (186)
304 2ion_A PDCD4, programmed cell 56.8 57 0.002 24.1 8.0 63 182-245 12-76 (152)
305 2fe3_A Peroxide operon regulat 54.8 44 0.0015 24.4 6.9 35 264-298 36-70 (145)
306 2fe3_A Peroxide operon regulat 54.6 54 0.0018 23.9 7.3 59 100-158 13-71 (145)
307 3ljn_A Hypothetical protein; a 54.6 24 0.00084 30.2 6.4 46 259-309 218-266 (364)
308 3t8k_A Uncharacterized protein 54.6 29 0.00098 26.6 6.1 18 266-283 91-108 (186)
309 2xig_A Ferric uptake regulatio 54.4 54 0.0019 24.1 7.4 61 99-159 17-77 (150)
310 1mzb_A Ferric uptake regulatio 54.0 45 0.0015 24.0 6.8 34 265-298 34-67 (136)
311 3kea_A K1L; tropism, ANK repea 53.2 93 0.0032 25.5 11.2 213 35-275 27-244 (285)
312 3bu8_A Telomeric repeat-bindin 51.8 87 0.003 24.7 11.0 22 328-349 121-142 (235)
313 4aez_C MAD3, mitotic spindle c 51.6 62 0.0021 25.8 7.5 51 267-317 132-183 (223)
314 2nsz_A Programmed cell death p 51.6 63 0.0022 23.1 9.4 62 183-245 11-74 (129)
315 4ets_A Ferric uptake regulatio 51.1 49 0.0017 24.8 6.7 61 99-159 23-85 (162)
316 3ygs_P Procaspase 9; apoptosis 50.0 41 0.0014 22.6 5.5 64 270-341 25-88 (97)
317 3mkr_B Coatomer subunit alpha; 49.9 51 0.0018 27.9 7.1 19 224-242 112-130 (320)
318 3e3v_A Regulatory protein RECX 49.6 72 0.0024 24.3 7.5 115 229-348 48-164 (177)
319 2w57_A Ferric uptake regulatio 49.5 54 0.0018 24.1 6.6 58 205-263 8-66 (150)
320 1mzb_A Ferric uptake regulatio 47.9 54 0.0018 23.6 6.3 55 103-157 12-67 (136)
321 3kae_A CDC27, possible protein 47.8 91 0.0031 23.8 7.6 32 317-348 110-141 (242)
322 2fu4_A Ferric uptake regulatio 47.7 52 0.0018 21.0 7.0 58 205-263 8-66 (83)
323 2w57_A Ferric uptake regulatio 47.3 61 0.0021 23.8 6.6 60 100-159 8-68 (150)
324 2rfa_A Transient receptor pote 47.1 63 0.0022 25.2 7.3 54 291-347 158-220 (232)
325 2pnn_A Transient receptor pote 46.5 19 0.00064 29.4 4.1 23 70-92 10-32 (273)
326 3ljn_A Hypothetical protein; a 46.3 80 0.0027 26.8 8.4 211 40-274 21-266 (364)
327 3eyy_A Putative iron uptake re 46.1 44 0.0015 24.5 5.6 33 266-298 34-66 (145)
328 4b93_B Ankyrin repeat domain-c 44.6 47 0.0016 27.1 6.3 25 68-92 6-30 (269)
329 3b7b_A Euchromatic histone-lys 44.3 71 0.0024 24.9 7.2 207 44-277 15-235 (237)
330 3twr_A Tankyrase-2; ankyrin re 44.1 62 0.0021 23.5 6.5 20 73-92 8-27 (165)
331 4b4t_O 26S proteasome regulato 44.0 1.6E+02 0.0056 25.7 10.5 20 221-240 83-102 (393)
332 2zu6_B Programmed cell death p 43.9 1.4E+02 0.005 25.0 10.5 65 75-145 7-74 (307)
333 3eyy_A Putative iron uptake re 42.5 65 0.0022 23.5 6.1 56 101-157 11-66 (145)
334 3pvs_A Replication-associated 42.2 1.9E+02 0.0064 25.8 13.8 37 227-263 268-304 (447)
335 3c1d_A Protein ORAA, regulator 42.1 1E+02 0.0035 22.8 10.0 49 230-280 46-94 (159)
336 4ets_A Ferric uptake regulatio 41.5 76 0.0026 23.7 6.4 45 219-263 37-83 (162)
337 3ltm_A Alpha-REP4; protein eng 41.3 1.2E+02 0.004 23.2 18.6 153 106-276 31-183 (211)
338 2ijq_A Hypothetical protein; s 41.2 1.1E+02 0.0038 22.9 7.5 50 122-171 46-103 (161)
339 1bd8_A P19INK4D CDK4/6 inhibit 41.2 47 0.0016 23.9 5.3 17 76-92 5-21 (156)
340 2wpv_A GET4, UPF0363 protein Y 41.1 1.6E+02 0.0056 24.8 24.8 24 213-236 133-156 (312)
341 3mwm_A ZUR, putative metal upt 40.5 46 0.0016 24.1 5.0 46 219-264 18-63 (139)
342 3jxi_A Vanilloid receptor-rela 40.0 63 0.0021 25.8 6.3 16 260-275 233-248 (260)
343 3mwm_A ZUR, putative metal upt 38.9 51 0.0018 23.9 5.0 51 109-159 14-64 (139)
344 2fu4_A Ferric uptake regulatio 38.7 74 0.0025 20.2 6.2 32 125-156 34-65 (83)
345 1y8m_A FIS1; mitochondria, unk 38.5 1.1E+02 0.0039 22.3 13.9 68 211-278 36-106 (144)
346 2b7e_A PRE-mRNA processing pro 38.5 23 0.00079 21.4 2.4 34 300-335 2-36 (59)
347 1qsa_A Protein (soluble lytic 38.3 2.6E+02 0.0088 26.3 26.9 114 123-241 229-346 (618)
348 2r9g_A AAA ATPase, central reg 38.2 1.4E+02 0.0048 23.3 8.9 36 192-228 27-62 (204)
349 2f8y_A Notch homolog 1, transl 36.9 1.3E+02 0.0045 23.0 7.7 19 74-92 59-77 (223)
350 2etb_A Transient receptor pote 36.7 88 0.003 24.8 6.7 49 44-92 6-65 (256)
351 2o03_A Probable zinc uptake re 36.7 69 0.0024 22.8 5.4 47 113-159 15-61 (131)
352 3bge_A Predicted ATPase; struc 36.6 1.5E+02 0.0051 23.1 8.6 32 157-189 21-52 (201)
353 4b4t_S RPN3, 26S proteasome re 36.4 1.7E+02 0.006 26.7 8.8 65 214-278 231-299 (523)
354 3pvs_A Replication-associated 36.3 2.3E+02 0.008 25.2 14.1 39 191-229 267-305 (447)
355 2o03_A Probable zinc uptake re 36.0 63 0.0022 23.0 5.0 41 223-263 19-59 (131)
356 3utm_A Tankyrase-1; tankyrase, 35.9 1.9E+02 0.0064 24.0 11.0 16 75-90 60-75 (351)
357 2etb_A Transient receptor pote 35.7 66 0.0023 25.6 5.8 55 115-170 6-70 (256)
358 3lpz_A GET4 (YOR164C homolog); 35.7 2.1E+02 0.0071 24.4 22.3 83 246-349 133-215 (336)
359 2dzn_A Probable 26S proteasome 35.7 48 0.0017 25.7 4.9 26 328-356 178-203 (228)
360 4fke_A Aminopeptidase N; zinc 34.1 3.6E+02 0.012 26.7 17.3 91 184-279 691-788 (909)
361 1bpo_A Protein (clathrin); cla 33.9 2.6E+02 0.0091 25.1 10.0 84 74-162 364-448 (494)
362 4b4t_S RPN3, 26S proteasome re 33.7 2.8E+02 0.0096 25.4 9.7 26 285-310 232-257 (523)
363 2jab_A H10-2-G3; HER2, darpin, 33.1 1.2E+02 0.0042 21.0 6.4 12 77-88 18-29 (136)
364 3bqo_A Telomeric repeat-bindin 32.5 1.8E+02 0.0061 22.7 8.0 21 292-312 125-145 (211)
365 3ltj_A Alpharep-4; protein eng 32.1 1.6E+02 0.0056 22.1 18.6 142 142-300 27-168 (201)
366 2p1h_A APAF-1, apoptotic prote 31.6 86 0.0029 20.7 4.8 59 269-337 25-83 (94)
367 3qil_A Clathrin heavy chain 1; 31.2 70 0.0024 22.6 4.2 50 112-164 36-85 (125)
368 3ctd_A Putative ATPase, AAA fa 30.7 2E+02 0.0067 22.7 8.5 36 157-193 49-84 (213)
369 1ug3_A EIF4GI, eukaryotic prot 30.2 83 0.0028 26.9 5.6 64 182-246 14-78 (339)
370 3hzj_A Rabgap1L, RAB GTPase-ac 29.7 88 0.003 26.2 5.7 44 236-279 176-219 (310)
371 4fke_A Aminopeptidase N; zinc 29.0 4.3E+02 0.015 26.1 19.4 160 146-312 689-859 (909)
372 2y1l_E Darpin-8.4; hydrolase-i 29.0 1.7E+02 0.0057 21.3 7.7 25 68-92 9-33 (169)
373 3d9h_A CDNA FLJ77766, highly s 28.7 2.3E+02 0.008 22.9 9.0 14 75-88 94-107 (285)
374 2y1l_E Darpin-8.4; hydrolase-i 28.7 1.7E+02 0.0057 21.3 6.8 50 40-92 14-66 (169)
375 1ug3_A EIF4GI, eukaryotic prot 28.7 1.8E+02 0.0063 24.7 7.5 149 145-309 13-166 (339)
376 3lpz_A GET4 (YOR164C homolog); 28.6 2.8E+02 0.0094 23.7 28.1 25 132-156 83-107 (336)
377 2yru_A Steroid receptor RNA ac 26.5 92 0.0031 21.9 4.3 17 119-135 72-88 (118)
378 2dod_A Transcription elongatio 26.0 96 0.0033 20.1 4.0 32 159-191 16-47 (82)
379 2r9g_A AAA ATPase, central reg 25.9 2.4E+02 0.0081 22.0 9.2 15 157-171 28-42 (204)
380 2pnn_A Transient receptor pote 25.8 2.3E+02 0.0079 22.6 7.6 57 35-92 9-76 (273)
381 3f6q_A Integrin-linked protein 25.6 1.5E+02 0.005 21.8 5.9 16 77-92 9-24 (179)
382 2wpv_A GET4, UPF0363 protein Y 25.4 3E+02 0.01 23.1 21.9 127 202-349 80-216 (312)
383 3kae_A CDC27, possible protein 24.4 2.4E+02 0.0082 21.6 10.7 65 67-140 28-94 (242)
384 1oai_A Nuclear RNA export fact 24.3 76 0.0026 19.1 3.0 22 334-355 33-54 (59)
385 3v31_A Ankyrin repeat family A 23.8 2.1E+02 0.007 20.6 8.3 13 75-87 38-50 (167)
386 3ygs_P Procaspase 9; apoptosis 23.8 1.7E+02 0.0057 19.5 5.9 11 125-135 54-64 (97)
387 2rg8_A Programmed cell death p 22.8 1.3E+02 0.0044 22.6 4.8 26 216-241 12-37 (165)
388 3eiq_C Programmed cell death p 22.7 3.7E+02 0.013 23.1 15.2 25 217-241 220-244 (358)
389 2dzn_A Probable 26S proteasome 22.6 1.3E+02 0.0043 23.2 5.1 16 73-88 36-51 (228)
390 3j20_Q 30S ribosomal protein S 22.4 1.4E+02 0.0047 22.2 4.6 23 342-364 77-99 (158)
391 4gq2_M Nucleoporin NUP120; bet 22.4 5.9E+02 0.02 25.3 11.2 108 114-228 816-950 (950)
392 1uzc_A Hypothetical protein FL 21.9 1.1E+02 0.0037 19.2 3.5 33 158-191 13-45 (71)
393 1bd8_A P19INK4D CDK4/6 inhibit 21.8 1.3E+02 0.0046 21.3 4.9 15 154-168 109-123 (156)
394 2xai_A ASB-9, ankyrin repeat a 21.8 3E+02 0.01 21.7 9.5 19 74-92 37-55 (261)
395 3e3v_A Regulatory protein RECX 21.7 2.6E+02 0.009 21.1 10.7 114 194-310 48-163 (177)
396 3dfg_A Xcrecx, regulatory prot 21.7 2.5E+02 0.0085 20.8 8.3 49 230-280 48-96 (162)
397 2ijq_A Hypothetical protein; s 21.6 2.6E+02 0.0087 20.9 8.1 49 228-276 46-102 (161)
398 1oyz_A Hypothetical protein YI 21.5 3.1E+02 0.011 21.9 19.0 201 106-327 66-277 (280)
399 2pby_A Glutaminase; secsg, rik 21.5 1.3E+02 0.0046 25.2 5.0 135 60-210 83-243 (308)
400 3se6_A Endoplasmic reticulum a 21.2 6.3E+02 0.021 25.3 15.2 89 184-279 753-848 (967)
401 2rg8_A Programmed cell death p 21.2 1.4E+02 0.0049 22.3 4.8 58 182-241 13-72 (165)
402 3twr_A Tankyrase-2; ankyrin re 20.7 2.2E+02 0.0077 20.3 6.0 19 74-92 43-61 (165)
403 3bge_A Predicted ATPase; struc 20.5 3.1E+02 0.01 21.3 7.8 55 190-244 18-77 (201)
404 3k1s_A PTS system, cellobiose- 20.3 2.2E+02 0.0075 19.6 5.5 17 119-135 33-49 (109)
405 3r88_A Anthranilate phosphorib 20.2 3.6E+02 0.012 23.4 7.8 64 71-138 23-89 (377)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.5e-35 Score=269.88 Aligned_cols=200 Identities=15% Similarity=0.175 Sum_probs=182.0
Q ss_pred HHHhhcCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC---------hHHHHHH
Q 017234 97 LDKMLKGNE-S-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD---------VVTALSL 165 (375)
Q Consensus 97 ~~~m~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~ 165 (375)
..++.+.+. + ....++.+|.+|++.|++++|.++|++|.+.|++||..|||.||.+|++.+. +++|.++
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~l 92 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHH
Confidence 455555554 2 3446889999999999999999999999999999999999999999987764 6889999
Q ss_pred HHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 017234 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245 (375)
Q Consensus 166 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 245 (375)
|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 93 f~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 93 FKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 017234 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (375)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 297 (375)
.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-35 Score=269.61 Aligned_cols=207 Identities=14% Similarity=0.172 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHCCCCcCHh-HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC---------
Q 017234 125 PFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN--------- 194 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~--------- 194 (375)
..+..+.+++.+.+..+.+. .++.+|++|++.|++++|+++|++|.+ .|+.||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 44667778888887766554 689999999999999999999999999 8999999999999999987665
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (375)
|.+.|+.||..+|++||.+|++.|++++|.++|++|++.+..|+..| |+.++..|...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T--~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST--FDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH--HHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH--HHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999 99999999875
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.9e-27 Score=223.54 Aligned_cols=240 Identities=7% Similarity=-0.044 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+. .+.+..+++.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 379 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAV 379 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 466667777777777777777777777776554 225556666666666666666666666666541 24456677777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
+..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 77777777777777777777665432 56677777777777777777777777777654 34566777777777777777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+.....|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777776643 346677777777777777777777777777654 4456532223777777777777777777
Q ss_pred HHHHHHHhCC
Q 017234 342 YSVGRMGKQG 351 (375)
Q Consensus 342 ~~~~~m~~~~ 351 (375)
++|+++.+.+
T Consensus 537 ~~~~~~~~~~ 546 (597)
T 2xpi_A 537 DALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 7777777653
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.8e-27 Score=223.56 Aligned_cols=303 Identities=11% Similarity=-0.007 Sum_probs=263.0
Q ss_pred hHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 017234 40 SNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117 (375)
Q Consensus 40 ~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~ 117 (375)
|+.++..+.+.++. ++.++++.+... .++..+|+.++.. ++.|++++|.++ ++++...++.+..+++.++..
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI----TTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH----HHHHHHcCcccHHHHHHHHHH
Confidence 34445555566654 778899988655 5899999999999 899999999999 566666667788999999999
Q ss_pred HhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHH
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 197 (375)
+.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998664 557899999999999999999999999999872 24467899999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++++++.+
T Consensus 426 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 426 AISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998764 388999999999999999999999999999865 45789999999999999999999999999977
Q ss_pred C----CCCcC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 278 G----GWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 278 ~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+. .+... |..+..+|.+.|++++|.+.|+++.+.
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANV--HTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHH--HHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 5 66787 78999999999999999999999999988652 13444 999999999999999999999999975
Q ss_pred CCccCch
Q 017234 352 LSFKSAE 358 (375)
Q Consensus 352 ~~~~~~~ 358 (375)
.|+.+.
T Consensus 580 -~p~~~~ 585 (597)
T 2xpi_A 580 -SPNEIM 585 (597)
T ss_dssp -CTTCHH
T ss_pred -CCCChH
Confidence 344443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.7e-21 Score=176.27 Aligned_cols=304 Identities=11% Similarity=0.027 Sum_probs=204.3
Q ss_pred cchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCC-cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 017234 38 SSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACL 114 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l 114 (375)
.++..+...+.+.++. ++.+.++.+.. ..|+ ...|..+... ...|++++|.+. ++++....+.+...+..+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQA----YVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHSCSSHHHHH----HHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCcHHHHHHH
Confidence 3555555666555554 55666665543 2343 2345555555 566666666666 333333444455556666
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
...+...|++++|.+.|+++.+.. +-+..+|+.+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCC
Confidence 666666677777777776666553 2245666667777777777777777777766521 2334556666667777777
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+++|...|++..+..+. +..++..+..++...|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|...+++
T Consensus 219 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766665432 57778888888888888888888888888764 33467788888888888888888888888
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
+.+.. +.+..++..+...+.+.|++++|...++++.+. .|+.... +..+...|.+.|++++|...|+++.+ +.|
T Consensus 297 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p 370 (388)
T 1w3b_A 297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAA-HSNLASVLQQQGKLQEALMHYKEAIR--ISP 370 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHH-HHHHHHHHHTTTCCHHHHHHHHHHHT--TCT
T ss_pred HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 87753 557778888888888888888888888888764 3443222 77888888888888888888888875 345
Q ss_pred cCch
Q 017234 355 KSAE 358 (375)
Q Consensus 355 ~~~~ 358 (375)
+.++
T Consensus 371 ~~~~ 374 (388)
T 1w3b_A 371 TFAD 374 (388)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 4443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=6.1e-21 Score=172.59 Aligned_cols=308 Identities=12% Similarity=-0.000 Sum_probs=250.7
Q ss_pred ccccchHHHH-HHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHH
Q 017234 35 TSVSSSNPLI-SRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111 (375)
Q Consensus 35 ~~~~~~~~ll-~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~ 111 (375)
|+......++ ..+.+.+.. ++...+...... .+.+...|..+... ...|++++|.+. ++++....+.+..+|
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~ 104 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEH----YRHALRLKPDFIDGY 104 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHH----HHHHHHcCcchHHHH
Confidence 4444333333 455556655 555665555432 34466788888888 799999999999 555555566678889
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
..+...+.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|.+.|+++.+. .+.+..+|..+...+..
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998874 224567788888999999999999999999873 23456789999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (375)
.|++++|.+.|+++.+..+. +...|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...
T Consensus 182 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987654 78889999999999999999999999998764 34578899999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
++++.+.+ +.+..++..+..++.+.|++++|...++++.+... .+... +..+...+.+.|++++|...++++.+.
T Consensus 260 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 260 YRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADS--LNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHH--HHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 99999864 44678899999999999999999999999988542 22333 889999999999999999999999864
Q ss_pred CCccCch
Q 017234 352 LSFKSAE 358 (375)
Q Consensus 352 ~~~~~~~ 358 (375)
.|+.+.
T Consensus 335 -~p~~~~ 340 (388)
T 1w3b_A 335 -FPEFAA 340 (388)
T ss_dssp -CTTCHH
T ss_pred -CCCcHH
Confidence 444443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2e-20 Score=172.42 Aligned_cols=312 Identities=12% Similarity=0.036 Sum_probs=254.7
Q ss_pred ccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 017234 35 TSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112 (375)
Q Consensus 35 ~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~ 112 (375)
.+...+..+...+.+.++. +|...|+.+.... ..+...|..+... ...|++++|... ++++...++.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPD----LTKVIQLKMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHH----HHHHHhcCCCcHHHHH
Confidence 3455777788888888876 7889999886542 2356777778777 799999999999 5666666777899999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCH---hHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDS---AVFNSL------------ICACLCSGDVVTALSLFEIMVSSEEYKP 177 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~ 177 (375)
.+...|.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|...|+++.+. .+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 99999999999999999999999864 2233 566555 44488999999999999999873 245
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH--
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV-- 255 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-- 255 (375)
+..++..+..+|.+.|++++|.++|+++.+... .+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 678899999999999999999999999988754 378999999999999999999999999998764 2344555444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc-h
Q 017234 256 ----------LEGLCARRKLDRVKSFLKFLLGGGWKIN-----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-V 319 (375)
Q Consensus 256 ----------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 319 (375)
...+.+.|++++|...++++.+.. |+ ...+..+..++.+.|++++|...++++.+.. |+ .
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~ 329 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccH
Confidence 788999999999999999998743 44 4578889999999999999999999998753 43 3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHH
Q 017234 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 364 (375)
.. |..+..+|...|++++|...|+++.+ +.|+.+.....+.
T Consensus 330 ~~--~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NA--LKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HH--HHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 33 89999999999999999999999986 4566665544443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.8e-19 Score=164.70 Aligned_cols=268 Identities=10% Similarity=-0.008 Sum_probs=226.2
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
+...|..+... +..|++++|... ++++....+.+..+|..+...+.+.|++++|...|+++.+.+ +.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 45667777777 799999999999 556656667789999999999999999999999999999875 346889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCCh----hcHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSV 212 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~ 212 (375)
+..++.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...|+++.+....
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 175 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW- 175 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 999999999999999999999872 3543 455555 44489999999999999999987643
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH--
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL-- 290 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 290 (375)
+..++..+..+|...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 88899999999999999999999999998764 4568899999999999999999999999998753 3345555554
Q ss_pred ----------HHHHHHcCChHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 291 ----------VKCYCELGRVDELEEQLETLTKCNQSPEVL---LHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 291 ----------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
...+...|++++|...|+++.+.. |+.. ...|..+...+.+.|++++|...++++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 889999999999999999998854 4321 223888999999999999999999999875
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.4e-18 Score=149.75 Aligned_cols=284 Identities=9% Similarity=-0.029 Sum_probs=231.7
Q ss_pred CCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhH
Q 017234 67 FNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145 (375)
Q Consensus 67 ~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 145 (375)
...+...+..+... +..|++++|.+. ++++....+.+...+..++..+...|++++|...++++.+.. +.+...
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKL----TSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 34455566666777 788999999999 555556666677788888899999999999999999998864 346788
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 017234 146 FNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (375)
Q Consensus 146 ~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 224 (375)
|..+...+...| ++++|...|++..+. .+.+...+..+...+...|++++|.+.|++..+.... +...+..+...+
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 999999999999 999999999999872 2445678899999999999999999999999887644 567788899999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCcCHHHHHHHHHHHHH
Q 017234 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQKLVKCYCE 296 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 296 (375)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..+|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998875 4567889999999999999999999999987631 13346789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHH
Q 017234 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 364 (375)
.|++++|...+++..+.... +... +..+...|.+.|++++|...|++..+. .|+.+.....+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~-~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 311 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQ-NAST--YSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLG 311 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHH--HHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhCcc-chHH--HHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHH
Confidence 99999999999999875432 2333 888999999999999999999998754 455554444333
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.3e-17 Score=144.91 Aligned_cols=307 Identities=10% Similarity=0.013 Sum_probs=241.5
Q ss_pred chHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 39 SSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 39 ~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
.+..+-..+...++. ++.+.+.......+ .+...|..+... ...|++++|...+ ++.....+.+...|..+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDL----TKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHH----HHHHHhCCCcchHHHHHHH
Confidence 344455666777766 77888888865432 235566666667 7999999999994 5555556667899999999
Q ss_pred HHhccCChhHHHHHHHHHHHCCCC--cCHhHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcH
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSL------------ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (375)
.+...|++++|...+++..+.... .+...+..+ ...+...|++++|.+.++++.+. .+.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHH
Confidence 999999999999999999887420 244555555 57889999999999999999873 24567888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH---------
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE--------- 253 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--------- 253 (375)
..+...+...|++++|.+.+++..+..+ .+..++..+...+...|++++|...|++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 8999999999999999999999998764 378999999999999999999999999998764 23334333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHH
Q 017234 254 ---KVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326 (375)
Q Consensus 254 ---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 326 (375)
.+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...+++..+.. |+.... +..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-~~~ 311 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNA-LKD 311 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHH-HHH
Confidence 23666889999999999999998754 2233 235567889999999999999999998854 433222 888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhH
Q 017234 327 IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360 (375)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 360 (375)
+...|...|++++|...|++..+. .|+.+...
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 343 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIR 343 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 999999999999999999999865 45555443
No 11
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=183.65 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=124.1
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSS--EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
-..|||++|++|++.|++++|.++|++|.+. .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999887641 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC------HHHHHHHHH
Q 017234 220 LIHGSLKARDF-DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN------ENMAQKLVK 292 (375)
Q Consensus 220 ll~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 292 (375)
+|.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.+ +++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 788999999999999999999999987665543 33344444 3455554 445555667
Q ss_pred HHHHcC
Q 017234 293 CYCELG 298 (375)
Q Consensus 293 ~~~~~g 298 (375)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=3.6e-18 Score=152.99 Aligned_cols=267 Identities=7% Similarity=-0.017 Sum_probs=216.5
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
+...|..+... ...|++++|... +++.....+.+..+|..+...+.+.|++++|...|++..+.. +.+..+|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILF----MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 45557777777 799999999999 556666667789999999999999999999999999998874 346889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-----------hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHh
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS-----------KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQT 216 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~ 216 (375)
+..++...|++++|...|+++.+. .|+. ..+..+...+...|++++|.+.|+++.+..... +..+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999999999999999999999872 2332 223345788999999999999999999875432 6889
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 296 (375)
+..+...|...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 9999999999999999999999998865 4568899999999999999999999999998864 4458889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCC---------chHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 297 LGRVDELEEQLETLTKCNQSP---------EVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
.|++++|...|++..+..... ......|..+..++...|+.+.+..+.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999987643221 00122389999999999999988887754
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=6.4e-18 Score=148.47 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=219.6
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
+...|-.+... ...|++++|... +++.....+.+..++..+...+...|++++|...+++..+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALA----FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 44555556666 799999999999 555555566788999999999999999999999999998874 447889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCcC
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF--------------IS-GFSSLGNVDAMNKWYAANIAAGFSVN 213 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (375)
+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.... +
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C
Confidence 9999999999999999999998732 2233333333 22 377889999999999999887644 7
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 293 (375)
..++..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 8899999999999999999999999998864 4567889999999999999999999999998764 4568889999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCC---------chHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 294 YCELGRVDELEEQLETLTKCNQSP---------EVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|...|++++|.+.+++..+..... ......|..+..++.+.|++++|..++++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999988754331 0022338999999999999999999987544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=8.1e-17 Score=143.15 Aligned_cols=277 Identities=10% Similarity=-0.029 Sum_probs=224.6
Q ss_pred ccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHH
Q 017234 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (375)
Q Consensus 72 ~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (375)
..|..+... ...|++++|... +++.....+.+..++..+...+...|++++|...+++..+.. +-+...+..+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 345556666 799999999999 555555667788999999999999999999999999998874 33678999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCC----ChhcHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCcCH
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKP----NSKTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSVNV 214 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (375)
.++...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++.+..+. +.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 154 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DA 154 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ch
Confidence 9999999999999999999872 45 34444444 57889999999999999999887653 78
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH------
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ------ 288 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------ 288 (375)
..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999999875 4578899999999999999999999999998754 33344333
Q ss_pred ------HHHHHHHHcCChHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHH
Q 017234 289 ------KLVKCYCELGRVDELEEQLETLTKCNQSPEV-LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361 (375)
Q Consensus 289 ------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 361 (375)
.+...+.+.|++++|...+++..+....... ....+..+...+.+.|++++|...+++..+. .|+.+....
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 2366789999999999999999885533211 1122556788999999999999999999886 354544333
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.2e-17 Score=149.61 Aligned_cols=268 Identities=9% Similarity=0.010 Sum_probs=221.0
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
+...|..+... ...|++++|... +++.....+.+..+|..+...+.+.|++++|...|++..+.. +.+..++..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 137 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLL----FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA 137 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHH----HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 45667777777 799999999999 566667777889999999999999999999999999998875 447889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHH---------------HHHHHHcCCCHHHHHHHHHHHHHCCCCc-
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA---------------FISGFSSLGNVDAMNKWYAANIAAGFSV- 212 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~- 212 (375)
+..++...|++++|...++++.+.. +.+...+.. .+..+...|++++|...|+++.+.....
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 9999999999999999999999832 222222221 2334448899999999999998875432
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 292 (375)
+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 58899999999999999999999999998864 4467899999999999999999999999998764 456888999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC---c-----hHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 293 CYCELGRVDELEEQLETLTKCNQSP---E-----VLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
+|.+.|++++|...|++..+..... . .....|..+..+|...|++++|..++++
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999987643222 0 0122389999999999999999998864
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=179.82 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=115.0
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIA---AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (375)
.-..||+++|++|++.|++++|.++|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3356899999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHH
Q 017234 254 KVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (375)
Q Consensus 254 ~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 303 (375)
++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999984 78999999999999999999999999776665433333
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.3e-17 Score=153.20 Aligned_cols=296 Identities=7% Similarity=-0.099 Sum_probs=241.8
Q ss_pred HHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 017234 42 PLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119 (375)
Q Consensus 42 ~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~ 119 (375)
..-..+.+.++. +|...+..+.... |+...|..+..+ ...|++++|.+. +++.....+.+..+|..+..++.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEM----STKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHH----HHHHhccChHHHHHHHHHHHHHH
Confidence 334566667766 8899999997655 788889888888 799999999999 55666667778899999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCc----------------------------------------------------------
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKP---------------------------------------------------------- 141 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p---------------------------------------------------------- 141 (375)
+.|++++|...|+++.+.+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987764210
Q ss_pred --------------------CHhHHHHHHHHHHc---CCChHHHHHHHHHHHh-----CCCC-------CCChhcHHHHH
Q 017234 142 --------------------DSAVFNSLICACLC---SGDVVTALSLFEIMVS-----SEEY-------KPNSKTYDAFI 186 (375)
Q Consensus 142 --------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~~-------~~~~~~~~~ll 186 (375)
+...+......+.. .|++++|..+|+++.+ .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12333333444443 8999999999999886 2111 22356778889
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
..+...|++++|...|++..+.... ..++..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999887644 8889999999999999999999999998875 446678999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +... +..+...|...|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~--~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEV--PNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHH--HHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998865 446778999999999999999999999999875432 2333 88899999999999999999999
Q ss_pred HHhC
Q 017234 347 MGKQ 350 (375)
Q Consensus 347 m~~~ 350 (375)
+.+.
T Consensus 398 a~~~ 401 (514)
T 2gw1_A 398 AIEL 401 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=7.3e-17 Score=141.87 Aligned_cols=293 Identities=6% Similarity=-0.042 Sum_probs=236.0
Q ss_pred CcccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHH
Q 017234 33 NSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110 (375)
Q Consensus 33 ~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~ 110 (375)
...+...+..+...+...++. ++.++++.+....+. +...+..++.. ...|++++|... +++.....+.+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYL----SHKLVDLYPSNPVS 92 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTSTHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHH----HHHHHHhCcCCHHH
Confidence 345566777777888888876 788888888654332 33445556666 799999999999 55555566677889
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 111 YACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 111 ~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
|..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+. .+.+...+..+...+
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 999999999999 9999999999998774 336788999999999999999999999999873 234467788899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHh
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG--------IIPSIPILEKVLEGLCA 261 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~ 261 (375)
...|++++|.+.+++..+.... +..++..+...+...|++++|...+++..+.. .+.+..++..+...+..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999987644 78899999999999999999999999987631 13345789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HhhCCHH
Q 017234 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY-ALSDRLD 338 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 338 (375)
.|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+.. |+.... +..+..++ ...|+.+
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFS-VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHH-HHHHHHHHHTTTTC--
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHH-HHHHHHHHHHHhCchh
Confidence 999999999999998764 4467889999999999999999999999988744 544332 67777777 4556543
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.8e-17 Score=151.09 Aligned_cols=233 Identities=12% Similarity=-0.006 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHH
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~ 188 (375)
.++..+...+...|++++|...++++.+.+ |+...+..+..++...|++++|...++++.+. .+.+..++..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHH
Confidence 344444445555555555555555555442 22445555555555555555555555555541 12334455555555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (375)
+...|++++|...|++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 55566666666666655554432 44555555556666666666666666655442 22344555555666666666666
Q ss_pred HHHHHHHHhCCC-CcC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 017234 269 KSFLKFLLGGGW-KIN----ENMAQKLVKCYCE---LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 269 ~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
...++++.+..- .++ ..++..+...+.. .|++++|...+++..+.. |+.... +..+...|.+.|++++|
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQA-KIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHH-HHHHHHHHHHhcCHHHH
Confidence 666665544210 011 2255556666666 666666666666665533 222211 55566666666666666
Q ss_pred HHHHHHHHhC
Q 017234 341 EYSVGRMGKQ 350 (375)
Q Consensus 341 ~~~~~~m~~~ 350 (375)
...|++..+.
T Consensus 469 ~~~~~~a~~~ 478 (514)
T 2gw1_A 469 ITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.5e-17 Score=147.44 Aligned_cols=238 Identities=8% Similarity=-0.049 Sum_probs=195.7
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
.+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+. .+.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 355668899999999999999999999999875 447889999999999999999999999999873 24457889999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCc---------CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSV---------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKV 255 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l 255 (375)
...|...|++++|.+.|+++.+..... ....+..+...+...|++++|...|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999998754220 1223344588899999999999999999987522 268899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC
Q 017234 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (375)
...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++..+.. |+.... |..+..+|.+.|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRS-RYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH-HHHHHHHHHHCC
Confidence 999999999999999999998864 4578899999999999999999999999998854 443222 889999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 017234 336 RLDDVEYSVGRMGKQ 350 (375)
Q Consensus 336 ~~~~A~~~~~~m~~~ 350 (375)
++++|...|+++.+.
T Consensus 296 ~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 296 AYREAVSNFLTALSL 310 (365)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999874
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.2e-16 Score=142.90 Aligned_cols=257 Identities=9% Similarity=-0.060 Sum_probs=203.8
Q ss_pred hcCChHHHHH-HHHHHHHHhhcCCC--C--CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 82 QSSSPKKAQL-VLEWRLDKMLKGNE--S--CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 82 ~~~~~~~a~~-~~~~~~~~m~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
..|++++|.+ . +++.....+ | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.
T Consensus 37 ~~~~~~~a~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 37 WLSDYDDLTSAT----YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ---------CHH----HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh----hhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3467778877 6 443332222 2 46678899999999999999999999999875 44788999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH---------------HH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES---------------LI 221 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll 221 (375)
|++++|...|+++.+. .+.+..++..+...+...|++++|.+.++++.+.... +...+.. .+
T Consensus 112 g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 112 EQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred cCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999999999873 2456788999999999999999999999999987643 3333321 23
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
..+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 44448899999999999998864221 57899999999999999999999999998764 45678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
++|...+++..+.. |+.... +..+...|.+.|++++|...|+++.+.
T Consensus 268 ~~A~~~~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 268 EEAVAAYRRALELQ--PGYIRS-RYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998854 433322 889999999999999999999999874
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=7e-16 Score=133.61 Aligned_cols=259 Identities=8% Similarity=-0.012 Sum_probs=193.2
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
+..|++..|+.. .+......+.+ ......+.++|...|+++.|...++. . -+|+..++..+...+...|+.
T Consensus 10 ~~~g~y~~ai~~----~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 10 FYIGSYQQCINE----AQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHTTCHHHHHHH----HHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHH----HHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 688899888888 44443333212 34556678899999999998876654 1 356777888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 238 (375)
++|++.++++.. .+..|+ ...+..+...+...|++++|.+.+++ +.+...+..+...+.+.|++++|.+.|+
T Consensus 82 ~~A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999887 444454 45556667888999999999999887 3578888889999999999999999999
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 017234 239 EMMSLGIIPSIPIL---EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 239 ~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 998764 443211 12233344568899999999999876 36678889999999999999999999999988754
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHhCCCCccCchhHHH
Q 017234 316 SPEVLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
|+.... +..++..+...|+.++ +.++++++.+. .|+.|....+
T Consensus 231 -p~~~~~-l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~d~ 274 (291)
T 3mkr_A 231 -SGHPET-LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIKEY 274 (291)
T ss_dssp -TTCHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred -CCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 433322 7778888888998876 56888888765 4555544443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=5.3e-16 Score=134.36 Aligned_cols=247 Identities=10% Similarity=0.040 Sum_probs=199.3
Q ss_pred cHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCc-CHhHHHHHH
Q 017234 73 SWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFNSLI 150 (375)
Q Consensus 73 ~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 150 (375)
..-.+..+ ...|+++.|+.. ++. ...|+..++..+...+...++.+.|.+.++++...+..| +...+..+.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~----~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la 108 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDE----IKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAA 108 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----SCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH----hcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 33445666 799999999887 332 356788899999999999999999999999999877545 566777788
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh---HHHHHHHHHcc
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT---YESLIHGSLKA 227 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~ 227 (375)
..+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+++.+.. |+... ...++..+...
T Consensus 109 ~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCc
Confidence 999999999999999986 4677889999999999999999999999999875 44321 12344555567
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH-HHHH
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEEQ 306 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~ 306 (375)
|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.. +-+..++..++..+...|+.++ +.++
T Consensus 180 ~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp THHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999874 5678899999999999999999999999998864 4578899999999999999976 6789
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
++++.+. .|+... +.+...+.+.++++..-|
T Consensus 258 ~~~~~~~--~P~~~~-----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 258 LSQLKDA--HRSHPF-----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHH--CTTCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCChH-----HHHHHHHHHHHHHHHHHc
Confidence 9999884 465443 445566666777666544
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=1.1e-14 Score=136.87 Aligned_cols=242 Identities=11% Similarity=0.004 Sum_probs=181.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...+++..+. .+.+..++..+...+
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 4556667777888888888888888876 456778888888888888888888888888762 244567788888888
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (375)
...|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 8888899998888888876543 56778888888888899999998888888764 344667888888888889999998
Q ss_pred HHHHHHHhCC-----CCcCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh
Q 017234 270 SFLKFLLGGG-----WKINENMAQKLVKCYCEL----------GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (375)
Q Consensus 270 ~~~~~~~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (375)
..++++.+.. .......+......+... |++++|...|++..+.. |+.... +..+...|.+.
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~-~~~l~~~~~~~ 475 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQA-KIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHh
Confidence 8888876532 111223344455667777 88999999998888754 333222 88899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCccCchhHHH
Q 017234 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 335 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
|++++|...|++..+.. |+.+.....
T Consensus 476 g~~~~A~~~~~~al~~~--~~~~~~~~~ 501 (537)
T 3fp2_A 476 EKIDEAIELFEDSAILA--RTMDEKLQA 501 (537)
T ss_dssp TCHHHHHHHHHHHHHHC----CHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 99999999999988753 444444443
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=4.7e-15 Score=139.48 Aligned_cols=298 Identities=8% Similarity=-0.035 Sum_probs=230.1
Q ss_pred cchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 017234 38 SSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li 115 (375)
..+..+-..+.+.++. +|.+.+.......+ .+...|..+..+ ...|++++|.+. +++.....+.+..++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEF----TTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCchHHHHHHHH
Confidence 3455555677777765 78888888865432 256677777777 799999999999 5566666677899999999
Q ss_pred HHHhccCChhHHHHHHHHHHHCCC------------------------------------CcCHh---------------
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGI------------------------------------KPDSA--------------- 144 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~--------------- 144 (375)
..+...|++++|...|+.+....- .|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999964421100 01111
Q ss_pred ---------------HHHHHHHHHHcC--------CChHHHHHHHHHHHhCCCCCCC--------hhcHHHHHHHHHcCC
Q 017234 145 ---------------VFNSLICACLCS--------GDVVTALSLFEIMVSSEEYKPN--------SKTYDAFISGFSSLG 193 (375)
Q Consensus 145 ---------------~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~--------~~~~~~ll~~~~~~~ 193 (375)
....+...+... |++++|..+|+++.+. .|+ ..++..+...+...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 111222222111 4788999999999872 344 235667778889999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
++++|.+.|++..+.. |+..++..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999864 558889999999999999999999999998865 4567889999999999999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
++.+.. +.+...+..+...+...|++++|...++++.+..... ... +..+...+...|++++|...|+++.+.
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEV--PTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHH--HHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 998764 3456789999999999999999999999998864322 233 888999999999999999999998875
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.9e-15 Score=132.55 Aligned_cols=265 Identities=9% Similarity=-0.025 Sum_probs=211.3
Q ss_pred cccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 017234 36 SVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~ 113 (375)
+...+-.+-..+...++. ++...++.+..... .+...|..+... ...|++++|.+.+ ++.....+.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIAL----NHARMLDPKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhcCcCCHHHHHH
Confidence 445556666777777765 78888888865432 255667767767 7999999999994 5555556678899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHH--------------HH-HHHcCCChHHHHHHHHHHHhCCCCCCC
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL--------------IC-ACLCSGDVVTALSLFEIMVSSEEYKPN 178 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~ 178 (375)
+...+...|++++|.+.+++..+.. +.+...+..+ .. .+...|++++|.+.++++.+. .+.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPND 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCC
Confidence 9999999999999999999998764 2233334333 22 367789999999999999873 2446
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
..++..+...+...|++++|.+.+++..+.... +..++..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 788999999999999999999999999887543 78899999999999999999999999998764 4467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCc-----------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 259 LCARRKLDRVKSFLKFLLGGGWKI-----------NENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
+...|++++|...++++.+..-.. +..++..+..++.+.|++++|..++++.
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999987643111 4678999999999999999999988653
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5e-15 Score=125.27 Aligned_cols=227 Identities=10% Similarity=0.036 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCC----hhcH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPN----SKTY 182 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~----~~~~ 182 (375)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.+++..+.. ...++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888888888888888888888776 678888888888888888888888888877621 01111 4677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (375)
..+...+...|++++|.+.|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 788888888888888888888888754 342 34566678888998888888763 23456777888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHH
Q 017234 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (375)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (375)
|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+.. |+.... |..+...+.+.|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRA-YIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHH-HHHHHHHHHHHhhHHHHHH
Confidence 99999999999887754 4467888888899999999999999999888754 332222 7788888999999999999
Q ss_pred HHHHHHhC
Q 017234 343 SVGRMGKQ 350 (375)
Q Consensus 343 ~~~~m~~~ 350 (375)
.|++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888765
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=4.8e-15 Score=122.65 Aligned_cols=201 Identities=14% Similarity=0.054 Sum_probs=140.9
Q ss_pred CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
+++...+..+...+.+.|++++|...|++..+. -+.+...+..+...+.+.|++++|...|++..+..+. +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 456667777777778888888888888877762 2345566777777778888888888888877776543 6677777
Q ss_pred HHHHHHcc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 017234 220 LIHGSLKA-----------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288 (375)
Q Consensus 220 ll~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (375)
+...+... |++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 88888988888888764 3356778888888888999999999998888776 6788888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+..+|...|++++|...|++..+.. |+.... +..+...+...|++++|+..|++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA--PKDLDL-RVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH-HHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH-HHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 88888999999999999998888754 433322 77788888889999999888877643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1.1e-16 Score=142.81 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017234 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (375)
Q Consensus 54 ~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (375)
+|.+.++.+ ++..+|..+..+ .+.|++++|.+.| .+ .+|..+|..++..+...|++++|...++
T Consensus 21 ~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsf----ik-----a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 21 RAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY----IK-----ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHH----Hc-----CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566666666 334578888888 7888888888885 22 2567788888888888888888888776
Q ss_pred HHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 017234 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212 (375)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 212 (375)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 66653 4567788888888888888888877763 366678888888888888888888888866
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 292 (375)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..++.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 36888888888888888888888877 2678888888888888888888554433 2234444556888
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh
Q 017234 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (375)
.|.+.|.+++|..+++...... + ....+|+-|..+|++-
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le--~-ah~~~ftel~il~~ky 254 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE--R-AHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST--T-CCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHHHhc
Confidence 8888888888888888876543 2 2233377777666665
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=3.4e-14 Score=121.38 Aligned_cols=248 Identities=10% Similarity=0.008 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC--hhcHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAF 185 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~l 185 (375)
...+......+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+ .+-.|+ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3445667778889999999999999988764 23556888888899999999999999999987 332222 2237888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
...+...|++++|.+.|++..+.... +..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998887544 67889999999999999999999999888763 34566777777345555699
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCC-CCCch----HHHHHHHHHHHHHhhCCH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR---VDELEEQLETLTKCN-QSPEV----LLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~----~~~~~~~li~~~~~~g~~ 337 (375)
++|...++++.+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+. ....|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998754 3457778888888888888 888888888876542 11221 112388899999999999
Q ss_pred HHHHHHHHHHHhCCCCccCchhHHH
Q 017234 338 DDVEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 338 ~~A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
++|.+.|++..+. .|+.+.....
T Consensus 238 ~~A~~~~~~al~~--~p~~~~a~~~ 260 (272)
T 3u4t_A 238 VKADAAWKNILAL--DPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhc--CccHHHHHHH
Confidence 9999999999875 3555544333
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.1e-14 Score=120.42 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 455667777777777788888887777777654 3356677777777777788888888777777621 3345566777
Q ss_pred HHHHHcC-----------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 017234 186 ISGFSSL-----------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254 (375)
Q Consensus 186 l~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 254 (375)
...+... |++++|...|++..+..+. +...+..+...+...|++++|...|++..+.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 8888888888887776543 67777788888888888888888888887766 66777778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887653 3456777778888888888888888776553
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.6e-14 Score=120.83 Aligned_cols=224 Identities=11% Similarity=-0.008 Sum_probs=188.9
Q ss_pred ccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCC--CcC----Hh
Q 017234 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPD----SA 144 (375)
Q Consensus 72 ~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~ 144 (375)
..|..+... ...|++++|...++ +..... .+..+|..+...+...|++++|...+++..+... .|+ ..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~----~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYN----KAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH----HHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH----HHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 345566666 79999999999954 444444 7889999999999999999999999999876531 112 57
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 224 (375)
++..+...+.+.|++++|...|++..+. .|+. ..+...|++++|...+++....... +...+..+...+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHH
Confidence 8999999999999999999999999882 4553 3466678899999999999887533 678899999999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHH
Q 017234 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 304 (375)
...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998865 4567889999999999999999999999998864 456888999999999999999999
Q ss_pred HHHHHHHhC
Q 017234 305 EQLETLTKC 313 (375)
Q Consensus 305 ~~~~~~~~~ 313 (375)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=8.2e-16 Score=137.12 Aligned_cols=258 Identities=13% Similarity=0.120 Sum_probs=94.3
Q ss_pred cchHHHHHHhhcCCcc-hHHHHHHHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 017234 38 SSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li 115 (375)
.+|..|..++.+.+.. +|.+.|.. .+|...|..++.+ ...|++++|... ++...+ ..+++.+.+.++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y----l~~ark-~~~~~~i~~~Li 101 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY----LQMARK-KARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH----HHHHHH-hCccchhHHHHH
Confidence 4666666666666644 44444432 2455566666666 466666666665 333322 234456666677
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCH
Q 017234 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195 (375)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (375)
.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..+..++.+.|++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccH
Confidence 77777777766666663 255567777777777777777777777655 2566777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017234 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (375)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (375)
++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++..|.+.|.+++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776665 25666777777777777777764444331 222233445666666777777777777666
Q ss_pred HhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 276 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
+... .-...+|+-|.-+|++-. +++..+-++..- ...+ ..-+|++|.+..-|.+..-++
T Consensus 234 L~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~---~~in-----i~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW---SRVN-----IPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS---TTSC-----HHHHHHHHHTTTCHHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH---HHhc-----CcHHHHHHHHHHHHHHHHHHH
Confidence 5443 334555666655555432 232222222111 1111 234566666665555555444
No 34
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=5.2e-13 Score=114.29 Aligned_cols=225 Identities=12% Similarity=-0.032 Sum_probs=182.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCChhcH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTY 182 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (375)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+ .+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 56677788888888889999999998888733 56778888888888 8899999999998887 33 67778
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 017234 183 DAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEK 254 (375)
Q Consensus 183 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 254 (375)
..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 889999999999888864 67788888888888 889999999998888865 5567777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCchHHHHHHH
Q 017234 255 VLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSG 326 (375)
Q Consensus 255 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 326 (375)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ | ... +..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a--~~~ 223 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGG--CFN 223 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHH--HHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHH--HHH
Confidence 7777877 889999999999888765 56777888888888 899999999998888764 3 223 677
Q ss_pred HHHHHHh----hCCHHHHHHHHHHHHhCCC
Q 017234 327 IIRLYAL----SDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 327 li~~~~~----~g~~~~A~~~~~~m~~~~~ 352 (375)
+...|.+ .+++++|.+.|++..+.|-
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888 8899999999998887753
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.2e-13 Score=114.15 Aligned_cols=203 Identities=7% Similarity=-0.043 Sum_probs=128.9
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+++..+.... +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 3455666666666666666666666666652 1334556666666666677777777777666655432 556666667
Q ss_pred HHHHcc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 017234 222 HGSLKA-RDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (375)
Q Consensus 222 ~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (375)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 777777 777777777777666322233 4556666667777777777777777766543 3346667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+++|...+++..+.....+... +..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADD--LLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777766432112222 566666667777777777777777654
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.3e-13 Score=116.32 Aligned_cols=200 Identities=10% Similarity=0.027 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
..|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 44555555556666666666666665541 1234455555566666666666666666665554332 45556666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522233 23455556666666666666666666665543 2345566666666666777777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
|...+++..+.... +... +..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARS--LLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHH--HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777666653321 1222 556666666677777777777666654
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.5e-13 Score=115.96 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 5667778888888889999999888887764 346778888888888899999999999888762 2345677888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 8888999999999998887732333 56778888888889999999999998888764 345778888888899999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999988754 4567778888888999999999999999888754
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=5.2e-15 Score=126.58 Aligned_cols=246 Identities=11% Similarity=-0.061 Sum_probs=187.5
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
..+++++|...+ +++..... .+..+|..+...+...|++++|...|++..+.. +.+..+|..+...+...|
T Consensus 17 ~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 17 PTLQQEVILARM----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCHHHHHHHHHH----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHH----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 557889999994 44444321 357788899999999999999999999998874 346889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHH
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 237 (375)
++++|.+.|++..+. .+.+..++..+...+...|++++|.+.|+++.+.. |+.......+..+...|++++|...+
T Consensus 92 ~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 92 NFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp CHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999873 23457788899999999999999999999998864 44444455555667779999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK---INENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 238 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
++..... +++...+. ++..+...++.++|...+....+.... .+..++..+...|...|++++|...|++..+.+
T Consensus 168 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8877653 34444443 667777888889999999888664311 125778889999999999999999999998854
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHH
Q 017234 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (375)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (375)
|+. +.....++...|++++|++.+
T Consensus 246 --p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT----CHHHHHHHHHHHHHHHC----
T ss_pred --chh----HHHHHHHHHHHHHHHhhHHHH
Confidence 433 233355678888999888776
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.9e-13 Score=111.85 Aligned_cols=205 Identities=9% Similarity=-0.072 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 356677888888888999999999998888764 335778888888888999999999999888872 23456778888
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 186 ISGFSSL-GNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 186 l~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
...+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 8888899 99999999999888732223 36778888888999999999999998888764 345778888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
++++|...++++.+..-..+...+..+...+...|+.+.|...++.+.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999988775411467778888888889999999999998887643
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=5e-14 Score=118.08 Aligned_cols=200 Identities=11% Similarity=0.029 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
....|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+. .+.+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 34445555555555555555555555555432 224445555555555555555555555555541 122344444555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
..+...|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555555444322 44445555555555555555555555544432 223344444444444455555
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+|...++++.+.. +.+..++..+..+|...|++++|...+++..+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555554444332 22344444444444444444444444444444
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.7e-13 Score=116.99 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=188.8
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC--HhHHHHHH
Q 017234 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLI 150 (375)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li 150 (375)
+...... +..|++++|... +++.....+.+..++..+...+...|++++|...+++..+.+..|+ ...|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEV----FNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHH----HHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHH----HHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3334444 699999999999 5566566666777899999999999999999999999988432222 33489999
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCCh
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 230 (375)
..+...|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.|++..+.... +...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998732 445678999999999999999999999998887433 677777777344445699
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCcC------HHHHHHHHHHHHHcCCh
Q 017234 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK---LDRVKSFLKFLLGGG-WKIN------ENMAQKLVKCYCELGRV 300 (375)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~ 300 (375)
++|.+.|++..+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998864 3446778888888888888 888998888886541 1233 25788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHH
Q 017234 301 DELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~ 321 (375)
++|...+++..+.. |+...
T Consensus 238 ~~A~~~~~~al~~~--p~~~~ 256 (272)
T 3u4t_A 238 VKADAAWKNILALD--PTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHhcC--ccHHH
Confidence 99999999998854 54443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=8.7e-14 Score=116.58 Aligned_cols=212 Identities=7% Similarity=-0.014 Sum_probs=164.2
Q ss_pred CCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHH
Q 017234 69 SSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147 (375)
Q Consensus 69 p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 147 (375)
.+...|..+... ...|++++|... +++.....+.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEA----FTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTT----HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHH----HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 345556666666 689999999999 566666677789999999999999999999999999998774 34788999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc
Q 017234 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 227 (375)
.+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHc
Confidence 9999999999999999999999873 2456778889999999999999999999999887543 788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (375)
|++++|...|++..+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 99999999999998764 4567889999999999999999999999998754 3344444443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.7e-13 Score=119.91 Aligned_cols=231 Identities=10% Similarity=0.039 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+..+|+.+...+.+.|++++|+..+++..+.. +-+...|+.+..++.+.|+ +++|+..|++..+.. +-+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 35667778888888888888888888888764 3357788888888888886 888888888888721 3456778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRK 264 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~ 264 (375)
..++...|++++|+..|++..+.... +..+|..+..++...|++++|+..|+++.+.+ +-+...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 88888888888888888888887654 78888888888888888888888888888765 3467788888888887 555
Q ss_pred HHHH-----HHHHHHHHhCCCCcCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhC--
Q 017234 265 LDRV-----KSFLKFLLGGGWKINENMAQKLVKCYCELG--RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-- 335 (375)
Q Consensus 265 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 335 (375)
.++| ...+++.++.. +-+...|..+...+...| ++++|.+.+.++ + ..|+.... +..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~a-l~~La~~~~~~~~~ 325 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYL-IAFLVDIYEDMLEN 325 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHH-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHH-HHHHHHHHHHHhcc
Confidence 4666 47777776643 335677888888888877 578888888777 3 34443332 777888887764
Q ss_pred -------CHHHHHHHHHHH
Q 017234 336 -------RLDDVEYSVGRM 347 (375)
Q Consensus 336 -------~~~~A~~~~~~m 347 (375)
.+++|.++|+++
T Consensus 326 ~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 258888888887
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=7.1e-13 Score=118.76 Aligned_cols=248 Identities=12% Similarity=0.024 Sum_probs=203.3
Q ss_pred ccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-hhHHHHHHHHHHHCCCCcCHhHHHHH
Q 017234 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAVFNSL 149 (375)
Q Consensus 72 ~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (375)
..|..+-.. ...|++++|++. +++.....+.+..+|+.+...+.+.|+ +++|+..|++..+.. +-+...|+.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~----~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKL----TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHH----HHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 345555555 588999999999 566666777889999999999999997 999999999999875 3378899999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc-cC
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-AR 228 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g 228 (375)
..++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.+..+. +...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999999832 446788999999999999999999999999998765 88999999999999 66
Q ss_pred ChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC---
Q 017234 229 DFDSV-----DRFYEEMMSLGIIPSIPILEKVLEGLCARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG--- 298 (375)
Q Consensus 229 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 298 (375)
..++| +..|++..+.. +-+...|..+...+...| ++++|...+.++ +. -+.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65887 48888888764 345788888888888888 689999999888 43 3456788999999998874
Q ss_pred ------ChHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHh
Q 017234 299 ------RVDELEEQLETL-TKCNQSPEVLLHFFSGIIRLYAL 333 (375)
Q Consensus 299 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~ 333 (375)
..++|.++++++ .+ ..|..... |..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~-w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE--KDTIRKEY-WRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT--TCGGGHHH-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH--hCchhHHH-HHHHHHHHHH
Confidence 258999999999 66 45655543 6666655543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.5e-12 Score=107.41 Aligned_cols=222 Identities=9% Similarity=-0.055 Sum_probs=190.4
Q ss_pred cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCcCHhH
Q 017234 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIKPDSAV 145 (375)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~ 145 (375)
...+..+-.. ...|++++|.+.|+. ... ..+..++..+...+.. .+++++|...|++..+.+ +...
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~----a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEK----ACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH----HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHH----HHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3345555555 688999999999643 333 3456788889999999 999999999999999886 7889
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhH
Q 017234 146 FNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTY 217 (375)
Q Consensus 146 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (375)
+..+...|.. .+++++|+..|++..+ . -+...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACD-L---KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHH-c---CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 9999999999 9999999999999998 3 377888899999999 999999999999999876 56778
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 017234 218 ESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQK 289 (375)
Q Consensus 218 ~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (375)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 888888888 999999999999998864 46778888889999 999999999999999875 3677888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHhCC
Q 017234 290 LVKCYCE----LGRVDELEEQLETLTKCN 314 (375)
Q Consensus 290 li~~~~~----~g~~~~a~~~~~~~~~~~ 314 (375)
+..+|.. .+++++|.+.|++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8999998 999999999999998865
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=3.4e-13 Score=115.15 Aligned_cols=227 Identities=11% Similarity=-0.055 Sum_probs=181.9
Q ss_pred HhccCChhHHHHHHHHHHHCCC---CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGI---KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
....|++++|...++++.+... +.+..++..+...+...|++++|...|++..+. .+.+..++..+...+...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccC
Confidence 3456889999999999988632 124678999999999999999999999999873 24467889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+++|.+.|++..+.... +..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999987543 68899999999999999999999999998864 5444445555566778999999999988
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
..... +++...+ .++..+...++.++|...+++..+...... .....+..+...|.+.|++++|...|++..+..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 87653 3444444 477778888899999999998865432110 012338889999999999999999999998753
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.1e-11 Score=108.11 Aligned_cols=209 Identities=6% Similarity=0.001 Sum_probs=103.7
Q ss_pred HhhcCCCCCHHHHHHHHHHHhc-------cCCh-------hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHH
Q 017234 99 KMLKGNESCLDEYACLIALSGK-------VQNV-------PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164 (375)
Q Consensus 99 ~m~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 164 (375)
+.....+.+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.|++++|..
T Consensus 41 ~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 120 (308)
T 2ond_A 41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 3333334455555555555542 3554 5566666555542112234455555555555666666666
Q ss_pred HHHHHHhCCCCCCCh-h-cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH-ccCChHHHHHHHHHHH
Q 017234 165 LFEIMVSSEEYKPNS-K-TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL-KARDFDSVDRFYEEMM 241 (375)
Q Consensus 165 ~~~~m~~~~~~~~~~-~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~ 241 (375)
+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+... ++...|........ ..|++++|..+|++..
T Consensus 121 ~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 196 (308)
T 2ond_A 121 IYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 196 (308)
T ss_dssp HHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665554 23322 2 455555555555556666666655555432 12333332222211 2455555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-WKI--NENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 197 ~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 197 KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 2234455555555555555555555555555542 232 244555555555555555555555555554
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=6.5e-12 Score=109.59 Aligned_cols=220 Identities=10% Similarity=0.004 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHCCCCcCHhHHHHHHHHHH-------cCCCh-------HHHHHHHHHHHhCCCCCCC-hhcHHHHHHHH
Q 017234 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACL-------CSGDV-------VTALSLFEIMVSSEEYKPN-SKTYDAFISGF 189 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~ 189 (375)
++|..+|++..+.. +-++..|..+...+. +.|++ ++|..+|++..+ .+.|+ ...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHH
Confidence 67888998888753 447788888888776 45886 899999999986 23454 45888999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDR 267 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~ 267 (375)
.+.|++++|.++|++..+..+. +.. +|..+...+.+.|++++|..+|++..+.+ +++...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999986432 343 89999999999999999999999999865 334455544433322 3799999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. ..|+.....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998753 3467889999999999999999999999999863 35543333388999999999999999999999
Q ss_pred HHhC
Q 017234 347 MGKQ 350 (375)
Q Consensus 347 m~~~ 350 (375)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.7e-13 Score=121.61 Aligned_cols=273 Identities=9% Similarity=-0.025 Sum_probs=201.3
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHC----CCCc-CH
Q 017234 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DS 143 (375)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~ 143 (375)
+...-.. ...|++++|...++.++. ..+.+ ..+|..+...+...|+++.|...+++..+. +-.| ..
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3333444 699999999999654443 34434 467888999999999999999999886533 2222 25
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCC--------------------HHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMN 199 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 199 (375)
.++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 57888999999999999999999988762110112 3477888889999999 99999
Q ss_pred HHHHHHHHC----CCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 017234 200 KWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 200 ~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~ 269 (375)
+.+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 2111 245788889999999999999999988865310 122 247888889999999999999
Q ss_pred HHHHHHHhC----CCCc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 270 SFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 270 ~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
..+++..+. +..+ ...++..+...|...|++++|...+++..+... .+......+..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988643 2111 155788889999999999999999988765311 11122233888999999999999999
Q ss_pred HHHHHHHhC
Q 017234 342 YSVGRMGKQ 350 (375)
Q Consensus 342 ~~~~~m~~~ 350 (375)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=8.8e-13 Score=115.62 Aligned_cols=266 Identities=9% Similarity=-0.019 Sum_probs=199.7
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHC----CCCc-CHhHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLIC 151 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 151 (375)
...|++++|...++.+++ ..+.+ ...+..+...+...|++++|...+++..+. +-.| ...++..+..
T Consensus 16 ~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 599999999999654443 34434 467889999999999999999999886543 2122 3567888999
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCC--------------------HHHHHHHHHHHHH
Q 017234 152 ACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMNKWYAANIA 207 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~ 207 (375)
.+...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.+.+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999987652111122 3377888889999999 9999999887654
Q ss_pred C----CC-CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 208 A----GF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 208 ~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
. +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 11245788888999999999999999988865310 111 24788888899999999999999998864
Q ss_pred C----CCCc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 278 G----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 278 ~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
. +..+ ...++..+...|...|++++|...+++..+.. ..+......+..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 1111 15577888999999999999999998876531 11222222378899999999999999999999886
Q ss_pred C
Q 017234 350 Q 350 (375)
Q Consensus 350 ~ 350 (375)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 5
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.52 E-value=2.3e-10 Score=106.45 Aligned_cols=223 Identities=10% Similarity=0.017 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCCh
Q 017234 108 LDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNS 179 (375)
Q Consensus 108 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 179 (375)
...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+ . .+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~ 255 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-Q---GNS 255 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-T---TCH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCH
Confidence 4444444444444 445555555555544433 33444444444443 4455555555555544 1 223
Q ss_pred hcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc-----CChHHHHHHHHHHHHCCCCCCHH
Q 017234 180 KTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-----RDFDSVDRFYEEMMSLGIIPSIP 250 (375)
Q Consensus 180 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~ 250 (375)
..+..+...|.. .++.++|.++|++..+.| +...+..+...|... +++++|...|++..+.| +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 344444444444 555666666666555443 334455555555554 56666666666666543 334
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCchHHHH
Q 017234 251 ILEKVLEGLCARR---KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHF 323 (375)
Q Consensus 251 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (375)
.+..+...|...| +.++|...+++..+.| +...+..|...|.. .+++++|...|++..+.+. ...
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---~~a-- 401 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL---SAA-- 401 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH--
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC---HHH--
Confidence 4555555555544 5666666666666653 45666666666666 6777777777777766541 222
Q ss_pred HHHHHHHHHh----hCCHHHHHHHHHHHHhCC
Q 017234 324 FSGIIRLYAL----SDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 324 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 351 (375)
+..+...|.+ .+++++|...|++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5566666666 677777777777777665
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=4.2e-13 Score=121.80 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=202.0
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHC----CC-CcCHhHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI-KPDSAVFNSLIC 151 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~ 151 (375)
...|++++|...++.+++ ..+.+. .+|..+...+...|++++|...+++..+. +- +....++..+..
T Consensus 59 ~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQ----AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHH----hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 699999999999654443 344443 57889999999999999999999987643 21 224567889999
Q ss_pred HHHcCCChHHHHHHHHHHHhCC---C-CCCChhcHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHC--
Q 017234 152 ACLCSGDVVTALSLFEIMVSSE---E-YKPNSKTYDAFISGFSSLGN-----------------VDAMNKWYAANIAA-- 208 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~---~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~-- 208 (375)
.+...|++++|...+++..+.. + .+....++..+...|...|+ +++|.+.+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887621 1 11234577888889999999 99999998876542
Q ss_pred --CC-CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 017234 209 --GF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGGG- 279 (375)
Q Consensus 209 --~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 279 (375)
+. .....++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 11 12345788889999999999999999998875311 112 2378888899999999999999999886531
Q ss_pred ---CC-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 280 ---WK-INENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 280 ---~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
.. ....++..+...|...|++++|...+++..+... .+......+..+...|...|++++|...|++..+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 1256788899999999999999999998765311 111222238889999999999999999999988753
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.51 E-value=4e-10 Score=104.84 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc---
Q 017234 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC--- 155 (375)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 155 (375)
.+++++|.+.|+ +....+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|..
T Consensus 92 ~~~~~~A~~~~~----~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 92 PQDYAQAVIWYK----KAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp CCCHHHHHHHHH----HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHH----HHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 455556655532 222222 34444445555544 455555555555555443 34444444444444
Q ss_pred -CCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-------------------
Q 017234 156 -SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFS------------------- 211 (375)
Q Consensus 156 -~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~------------------- 211 (375)
.+++++|.+.|++..+ . .+...+..+...|.. .++.++|.++|++..+.|..
T Consensus 163 ~~~d~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAE-Q---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp SCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 4455555555555544 1 233444444444444 44455555555444443210
Q ss_pred --------------cCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHH
Q 017234 212 --------------VNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-----RKLDRV 268 (375)
Q Consensus 212 --------------~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a 268 (375)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|... ++.++|
T Consensus 239 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 123334444444444 455555555555554432 233444444455444 556666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh----hCCHHHHH
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL----SDRLDDVE 341 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 341 (375)
...+++..+.| +...+..+...|...| ++++|.+.|++..+.+ +... +..+...|.. .+++++|.
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a--~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAA--QFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHH--HHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHH--HHHHHHHHHcCCCCCCCHHHHH
Confidence 66666555544 3344555555555544 5566666666665542 1222 5556666666 56777777
Q ss_pred HHHHHHHhCC
Q 017234 342 YSVGRMGKQG 351 (375)
Q Consensus 342 ~~~~~m~~~~ 351 (375)
..|++..+.|
T Consensus 388 ~~~~~A~~~~ 397 (490)
T 2xm6_A 388 IWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 7777776654
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.6e-13 Score=117.97 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHC-------CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-----C
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----E 174 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~ 174 (375)
+..++..+...+...|++++|...++++.+. ..+....++..+...+...|++++|...+++..+.. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566777777778888888888888777652 223345567777778888888888888887776520 1
Q ss_pred -CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------CC-CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---
Q 017234 175 -YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------GF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--- 243 (375)
Q Consensus 175 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--- 243 (375)
.+....++..+...|...|++++|.+.+++..+. +. .....++..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456677777888888888888888877653 11 224556777788888888888888888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCcC-------HHHHHHHHHHHHHcCChHHHHH
Q 017234 244 ---GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGG-------GWKIN-------ENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 244 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~a~~ 305 (375)
+-.| ...++..+...+...|++++|...++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2356777778888888888888888887652 11111 1223333344445566666666
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.++..... .|.. ...+..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~--~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD--SPTV-TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC--CchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666542 2322 23388899999999999999999988765
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.2e-12 Score=121.26 Aligned_cols=203 Identities=10% Similarity=-0.036 Sum_probs=121.0
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCCh-hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 017234 98 DKMLKGNESCLDEYACLIALSGKVQNV-PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176 (375)
Q Consensus 98 ~~m~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 176 (375)
++.......+...+..+...+...|++ ++|.+.|++..+.. +-+...|..+..+|.+.|++++|.+.|++..+ ..
T Consensus 92 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~ 167 (474)
T 4abn_A 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HC 167 (474)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TC
T ss_pred HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hC
Confidence 333333444566666666666666666 66666666666553 22455666666666666666666666666665 23
Q ss_pred CChhcHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc--------CChHHHHHHHHH
Q 017234 177 PNSKTYDAFISGFSSL---------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA--------RDFDSVDRFYEE 239 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~ 239 (375)
|+...+..+...+... |++++|.+.|++..+.... +...|..+..+|... |++++|...|++
T Consensus 168 p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 168 KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 5555666666666666 6666666666666655433 556666666666665 666666666666
Q ss_pred HHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHH
Q 017234 240 MMSLGII---PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307 (375)
Q Consensus 240 m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 307 (375)
..+.. + -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 247 al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 247 AEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65542 1 245556666666666666666666666665543 234445555556666666655555443
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=8.1e-12 Score=100.04 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=100.3
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (375)
++.+|..+...|.+.|++++|.+.|++..+..+. +..++..+..+|...|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445666666666666666666666666655433 55566666666666666666666666665543 233445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCH
Q 017234 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (375)
.+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|.+.|++..+.+ |+.... |..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~-~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRA-YQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhH-HHHHHHHHHHCCCH
Confidence 6666666666666666665543 3345566666666666677777776666666533 322221 66666667777777
Q ss_pred HHHHHHHHHHHhC
Q 017234 338 DDVEYSVGRMGKQ 350 (375)
Q Consensus 338 ~~A~~~~~~m~~~ 350 (375)
++|+..|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7777777666653
No 57
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=4.6e-11 Score=110.37 Aligned_cols=272 Identities=12% Similarity=0.025 Sum_probs=142.0
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC-----C
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKG-----NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----G 138 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g 138 (375)
....||.|-.. ...|+.++|++.|+..++..... .+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34456666555 57777777777766554432221 1234566777777777777777777777665432 0
Q ss_pred -CC-cCHhHHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHH---HHcCCCHHHHHHHHHHHHHCCC
Q 017234 139 -IK-PDSAVFNSLICACLC--SGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISG---FSSLGNVDAMNKWYAANIAAGF 210 (375)
Q Consensus 139 -~~-p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~ 210 (375)
.. ....++..+..++.+ .+++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 01 123455555444443 34577777777777652 333 2333333333 3344556666666666665443
Q ss_pred CcCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 017234 211 SVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286 (375)
Q Consensus 211 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 286 (375)
. +..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +-+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 2 44445444444333 345666666666665543 3445566666666777777777777776665542 223444
Q ss_pred HHHHHHHHHHc-------------------CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 287 AQKLVKCYCEL-------------------GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 287 ~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
+..+..+|... +.++.|...+++..+.+.... .. +..+...|...|++++|...|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~--~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RV--CSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC-CC--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh-hh--hhhHHHHHHHhccHHHHHHHHHHH
Confidence 44444333221 123344444544444322111 11 445555555555666666555555
Q ss_pred HhC
Q 017234 348 GKQ 350 (375)
Q Consensus 348 ~~~ 350 (375)
.+.
T Consensus 361 L~~ 363 (472)
T 4g1t_A 361 FSK 363 (472)
T ss_dssp HHS
T ss_pred Hhc
Confidence 544
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=8.7e-12 Score=99.87 Aligned_cols=166 Identities=10% Similarity=0.017 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
+..+|..+...+.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 34455555555555555555555555555411 223344555555555555555555555555544332 444455555
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChH
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 301 (375)
..+...++++.|...+.+..... +.+...+..+...+.+.|++++|...+++..+.. +.+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555555555432 2334455555555555566666666655555442 234455555556666666666
Q ss_pred HHHHHHHHHHh
Q 017234 302 ELEEQLETLTK 312 (375)
Q Consensus 302 ~a~~~~~~~~~ 312 (375)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.3e-10 Score=105.71 Aligned_cols=308 Identities=8% Similarity=-0.121 Sum_probs=212.8
Q ss_pred ccchHHHHHHhhcCCcc-hHHHHHHHhhh-------ccCCCC-cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCC--
Q 017234 37 VSSSNPLISRLLQVPVS-QIKTTLDSVDI-------FAFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGN-- 104 (375)
Q Consensus 37 ~~~~~~ll~~l~~~~~~-~~~~~~~~m~~-------~~~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~-- 104 (375)
...||.|-..+...|+. +|.+.+.+... ....|+ ..+|+.+... ...|++++|...++.+..-.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45688877777777765 66666654421 122343 4578888888 799999999999776554433322
Q ss_pred --CCCHHHHHHHHHHHhc--cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHH---HHcCCChHHHHHHHHHHHhCCCCCC
Q 017234 105 --ESCLDEYACLIALSGK--VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVSSEEYKP 177 (375)
Q Consensus 105 --~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~ 177 (375)
.....++.....++.+ .+++++|...|++..+.. +-++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Cc
Confidence 1245667666655554 457999999999998764 2245555555544 445688899999999888722 33
Q ss_pred ChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 017234 178 NSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (375)
Q Consensus 178 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (375)
+..++..+...+.. .++.++|.+.+++.....+. +..++..+...|...|++++|...+++..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45556555555544 45678999999998887644 78889999999999999999999999998864 33456666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 254 KVLEGLCAR-------------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 254 ~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
.+..+|... +..+.|...++...+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555422 23566777777776653 3455678889999999999999999999998876
Q ss_pred CCCchHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhC
Q 017234 315 QSPEVLLHFFSGIIR-LYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 315 ~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+......+..+.. .+...|++++|+..|++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555433222333332 245779999999999988764
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.8e-10 Score=108.24 Aligned_cols=148 Identities=8% Similarity=0.036 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+|.++|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ ...|...+..+.+.|++++|..+|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44555554443111123444444455555555555555555554443 222 12444444444444455555555554
Q ss_pred HHhCCCCcCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 275 LLGGGWKINENMAQKLVKC-YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+.. +.+...|...... +...|+.++|..+|+...+.. |+... .|..++..+.+.|+.++|..+|++....
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~-~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPE-YVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHH-HHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 44431 1111112111111 123444555555554444322 21111 1444444444445555555555444443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3.2e-12 Score=118.41 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=182.2
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh-HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 017234 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV-VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 201 (375)
.++.+.+.++...+.. +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3566777777666543 34788999999999999999 99999999998732 34578899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHcc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 017234 202 YAANIAAGFSVNVQTYESLIHGSLKA---------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--------RK 264 (375)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~ 264 (375)
|++..+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999875 6678999999999999 99999999999998875 44678899999999988 99
Q ss_pred HHHHHHHHHHHHhCCCC---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 265 LDRVKSFLKFLLGGGWK---INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
+++|...+++..+.. + .+...|..+..+|...|++++|...|++..+.. |+.... +..+...+...|++++|+
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a-~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEP-QQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999998853 2 488899999999999999999999999998854 443322 788889999999999999
Q ss_pred HHHHHH
Q 017234 342 YSVGRM 347 (375)
Q Consensus 342 ~~~~~m 347 (375)
..+.++
T Consensus 313 ~~~~~~ 318 (474)
T 4abn_A 313 ESKGKT 318 (474)
T ss_dssp HHTTTC
T ss_pred HHhccc
Confidence 876544
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=2.4e-11 Score=109.26 Aligned_cols=234 Identities=8% Similarity=0.009 Sum_probs=177.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHC----CCCc-CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----ChhcH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-----NSKTY 182 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~ 182 (375)
.....+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+...-.+ ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3666778999999999999998764 2122 346889999999999999999999998876211112 23578
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCC----Cc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHHH
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAAGF----SV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GI-IPSIPIL 252 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~ 252 (375)
+.+...|...|++++|.+.|++..+... .+ ...++..+...|...|++++|.+.|++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8889999999999999999998765311 11 1357888999999999999999999998762 32 3335778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCchHHHHHH
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGG----GWKINENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHFFS 325 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 325 (375)
..+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++. +..|.... .+.
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~-~~~ 343 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED-FAI 343 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH-HHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH-HHH
Confidence 89999999999999999999988653 111222335667888888999 66666666654 33333322 378
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 326 GIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.+...|...|++++|...|++..+.
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999988763
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=113.75 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=168.9
Q ss_pred cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC------CC
Q 017234 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ------GI 139 (375)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 139 (375)
..+|..+... ...|++++|...++.++...... ......++..+...+...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556666666 69999999999976665544332 2245778889999999999999999999988754 22
Q ss_pred -CcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-----CC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----
Q 017234 140 -KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA---- 208 (375)
Q Consensus 140 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 208 (375)
+....++..+...+...|++++|...+++..+.. +- +....++..+...+...|++++|.+++++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2346688999999999999999999999988621 11 223456788899999999999999999998764
Q ss_pred --CCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 017234 209 --GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-------GIIPSI-------PILEKVLEGLCARRKLDRVKSF 271 (375)
Q Consensus 209 --~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~li~~~~~~g~~~~a~~~ 271 (375)
+..| ...++..+...|...|++++|...+++..+. ...+.. ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 4567888999999999999999999998753 111211 1222233333445556666666
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+....... +.+..++..+..+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665432 34567788999999999999999999998765
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.4e-11 Score=111.25 Aligned_cols=296 Identities=11% Similarity=0.012 Sum_probs=214.3
Q ss_pred HHHHHHhhcCCcc-hHHHHHHHhhhccCCC-C--cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC--CCHHHHHH
Q 017234 41 NPLISRLLQVPVS-QIKTTLDSVDIFAFNS-S--QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYAC 113 (375)
Q Consensus 41 ~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p-~--~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~ 113 (375)
...-..+...++. ++...++......... . ...|..+... ...|++++|...++..+......+. ....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3334556666765 7788888886653221 1 2456666666 6999999999998776665554443 23667888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCC----CC-cCHhHHHHHHHHHHcCCC--------------------hHHHHHHHHH
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQG----IK-PDSAVFNSLICACLCSGD--------------------VVTALSLFEI 168 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~ 168 (375)
+...+...|++++|...+++..+.. -. ....++..+...+...|+ +++|.+.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998876531 11 114488889999999999 9999999987
Q ss_pred HHhC---CCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHccCChHHHHHHHHH
Q 017234 169 MVSS---EEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VN----VQTYESLIHGSLKARDFDSVDRFYEE 239 (375)
Q Consensus 169 m~~~---~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 239 (375)
..+. .+-.| ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7541 11111 2346788889999999999999999987653111 11 34788899999999999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 017234 240 MMSL----GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 240 m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
.... +..+. ..++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8653 11111 457888889999999999999999988653 1111 155788899999999999999999988
Q ss_pred HHhC----CCCCchHHHHHHHHHHHHHhhCCH
Q 017234 310 LTKC----NQSPEVLLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 310 ~~~~----~~~~~~~~~~~~~li~~~~~~g~~ 337 (375)
..+. +..+ .....+..+...+...|+.
T Consensus 333 al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 333 HLEISREVGDKS-GELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCc-chhHHHHHHHHHHHHhhHh
Confidence 6543 2222 2223377788888888765
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.8e-10 Score=105.38 Aligned_cols=300 Identities=9% Similarity=0.025 Sum_probs=175.5
Q ss_pred cccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCC-CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 017234 36 SVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112 (375)
Q Consensus 36 ~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~ 112 (375)
+...+..++.. .+.++. ++..+++.+.. ..| +...|...+.. .+.|++++|..+ +++..... |+...|.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~----~~ral~~~-p~~~lw~ 83 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKL----FQRCLMKV-LHIDLWK 83 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHTTTC-CCHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcC-CChHHHH
Confidence 45577777774 555554 77899999865 344 45568888888 789999999999 56665544 6777777
Q ss_pred HHHHHH-hccCChhHHHH----HHHHHHH-CCCCc-CHhHHHHHHHHHHc---------CCChHHHHHHHHHHHhCCCCC
Q 017234 113 CLIALS-GKVQNVPFAMH----VFTSMEA-QGIKP-DSAVFNSLICACLC---------SGDVVTALSLFEIMVSSEEYK 176 (375)
Q Consensus 113 ~li~~~-~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~ 176 (375)
..+... ...|+++.|.+ +|+...+ .|..| +...|...+....+ .|++++|..+|++..+ ....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh
Confidence 777533 45678777765 7766654 35444 56788888887655 6889999999999987 2111
Q ss_pred CChhcHHHHHHHH-------------HcCCCHHHHHHHHHH---------------------------------------
Q 017234 177 PNSKTYDAFISGF-------------SSLGNVDAMNKWYAA--------------------------------------- 204 (375)
Q Consensus 177 ~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~--------------------------------------- 204 (375)
+....|....... .+.+++..|..++.+
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 1123444322210 012233344433332
Q ss_pred ---------------------HHHCCCCcCHHhHHHHHHHHHc-------cCChH-------HHHHHHHHHHHCCCCCCH
Q 017234 205 ---------------------NIAAGFSVNVQTYESLIHGSLK-------ARDFD-------SVDRFYEEMMSLGIIPSI 249 (375)
Q Consensus 205 ---------------------m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~ 249 (375)
.....+ .+...|..+...+.. .|+++ +|..+|++..+.-.+-+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 222211 134444444444443 46655 666666666542112345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-E-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
..|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|..+|++..+.... .... |...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~--~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHV--YVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHH--HHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHH--HHHH
Confidence 56666666666667777777777666653 232 2 35666666666666677777777666653221 1111 1111
Q ss_pred H-HHHHhhCCHHHHHHHHHHHHhC
Q 017234 328 I-RLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 328 i-~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
. ..+...|++++|..+|++..+.
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHH
Confidence 1 1123466677777777666654
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=7.3e-11 Score=93.94 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
.++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 333333344444444444444444433321 1223334444444444444444444444443321 22334444444444
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
...|++++|...+++..+.... +... +..+...+...|++++|...+++..+
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~-~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPN-EGKV--HRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhcCcc-chHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555544444443211 1111 44444555555555555555555443
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.37 E-value=8.2e-10 Score=110.18 Aligned_cols=205 Identities=7% Similarity=0.046 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
.+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++ . .+++...+.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETEL 1173 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHH
Confidence 35677777888888888888888877553 3677777788888888888888888877665 2 2444444457
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
+.+|.+.+++++..... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH
Confidence 77777777777533332 2 245566667777788888888888888774 3677888888888888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (375)
++|.+.+++. .+..+|..+..+|...|++..|......+. .+... +..++..|.+.|.+++|+.+++
T Consensus 1238 q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~de--Leeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1238 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHH--HHHHHHHHHHcCCHHHHHHHHH
Confidence 8888877765 245666666666666677666666554321 12222 6677888888888888888886
Q ss_pred HHH
Q 017234 346 RMG 348 (375)
Q Consensus 346 ~m~ 348 (375)
...
T Consensus 1305 ~aL 1307 (1630)
T 1xi4_A 1305 AAL 1307 (1630)
T ss_pred HHh
Confidence 655
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=6.9e-11 Score=94.09 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=146.4
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 456788889999999999999999999862 345677888999999999999999999999988754 37888999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
.+...|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998864 4567888999999999999999999999998764 4567889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 017234 303 LEEQLETLTKCN 314 (375)
Q Consensus 303 a~~~~~~~~~~~ 314 (375)
|...+++..+..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999987643
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.7e-11 Score=111.11 Aligned_cols=268 Identities=9% Similarity=0.004 Sum_probs=201.5
Q ss_pred HHHhhcCCcc-hHHHHHHHhhhccCCCCc-----ccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC--CCHHHHHHH
Q 017234 44 ISRLLQVPVS-QIKTTLDSVDIFAFNSSQ-----FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACL 114 (375)
Q Consensus 44 l~~l~~~~~~-~~~~~~~~m~~~~~~p~~-----~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~l 114 (375)
-..+...++. ++...++..... .|+. ..|..+... ...|++++|...++..+......+. ....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3555666765 778888888664 3332 356666666 6999999999998777665544443 356788899
Q ss_pred HHHHhccCChhHHHHHHHHHHHC----CC-CcCHhHHHHHHHHHHcCCC-----------------hHHHHHHHHHHHhC
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQ----GI-KPDSAVFNSLICACLCSGD-----------------VVTALSLFEIMVSS 172 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~ 172 (375)
...|...|++++|...+++..+. +- +....++..+...+...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999987653 11 2235588889999999999 99999998887541
Q ss_pred ---CCC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 173 ---EEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VN----VQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 173 ---~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
.+- .....++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 011 112347778889999999999999999987654211 11 347888999999999999999999888653
Q ss_pred CC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 244 GI----I-PSIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GW-KINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 244 ~~----~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.. . ....++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 0 11467888889999999999999999988653 11 112457888999999999999999999988763
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=3.9e-11 Score=102.42 Aligned_cols=207 Identities=9% Similarity=0.058 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------C-
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSE-----E-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------G- 209 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~- 209 (375)
..++..+...+...|++++|...+++..+.. + .+....++..+...|...|++++|.+.|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344455555555555555555555544310 0 0112334455555555555555555555554432 0
Q ss_pred CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 017234 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL------GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGG---- 278 (375)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 278 (375)
.+....++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1123445556666666666666666666665543 1112 2345566666666666666666666666442
Q ss_pred ---CCCcC-HHHHHHHHHHHHHcCChHHHHHHHHH---HHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 279 ---GWKIN-ENMAQKLVKCYCELGRVDELEEQLET---LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 279 ---~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
...+. ...+..+...+...+....+...... ....+.........+..+...|...|++++|..+|++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 12233233333332222222211111 1111112222223377788888888888888888887765
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=6e-11 Score=114.61 Aligned_cols=165 Identities=10% Similarity=0.082 Sum_probs=101.1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
..+|+.+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|.+.|++..+.... +..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566666666666677777777666666521 223455666666666666666666666666665433 4566666666
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
+|...|++++|++.|++..+.. +-+...|+.+..++...|++++|...|++.++.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 6666666666666666666543 2335566666666666666666666666665543 2245556666666666666666
Q ss_pred HHHHHHHHHh
Q 017234 303 LEEQLETLTK 312 (375)
Q Consensus 303 a~~~~~~~~~ 312 (375)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=3.2e-11 Score=105.57 Aligned_cols=269 Identities=12% Similarity=0.035 Sum_probs=198.2
Q ss_pred HHhhcCCcc-hHHHHHHHhhhccCCCC---cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHH
Q 017234 45 SRLLQVPVS-QIKTTLDSVDIFAFNSS---QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIAL 117 (375)
Q Consensus 45 ~~l~~~~~~-~~~~~~~~m~~~~~~p~---~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~li~~ 117 (375)
..+...++. ++...++.......... ...|..+... ...|++++|.+.++..+......+. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 445566655 77888888866432211 3456666666 6999999999998776665544443 246778899999
Q ss_pred HhccCChhHHHHHHHHHHHCCC-CcC----HhHHHHHHHHHHcCCC--------------------hHHHHHHHHHHHhC
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGI-KPD----SAVFNSLICACLCSGD--------------------VVTALSLFEIMVSS 172 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~ 172 (375)
+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764311 112 3478889999999999 99999999887541
Q ss_pred ---CC-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 173 ---EE-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-----SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 173 ---~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
.+ ......++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...+++....
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 111234677888899999999999999998765311 112347888899999999999999999887653
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 244 GI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWK-INENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 244 ~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.. .++ ..++..+...+...|++++|...+++..+. +-. ....++..+...|...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 111 457788888999999999999999988653 111 12446788999999999999999999998764
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=5.1e-10 Score=92.79 Aligned_cols=205 Identities=9% Similarity=-0.001 Sum_probs=157.4
Q ss_pred cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 017234 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220 (375)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 220 (375)
.|+..+......+.+.|++++|+..|++..+ ..-+++...+..+..++...|++++|.+.|++..+..+. +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 4678899999999999999999999999987 322267777777999999999999999999999987654 77889999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKL 290 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 290 (375)
...|...|++++|...|++..+.. +.+. ..|..+...+...|++++|...+++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998864 2334 45777888888999999999999999875 354 5677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHH
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
..+|...| ...++++...+... ... |.... ....+.+++|...|++..+. .|+.++....
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~-~~~--~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSN-KEK--YASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTC-HHH--HHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccCC-HHH--HHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 78875544 44556665543222 222 44443 44567799999999999875 4555544333
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1e-09 Score=98.07 Aligned_cols=266 Identities=13% Similarity=0.045 Sum_probs=167.9
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHCCC-CcC----HhHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGI-KPD----SAVFNSLIC 151 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~ 151 (375)
...|++++|...++..+... ...+. .+++.+...+...|+++.|...+++..+... .++ ..++..+..
T Consensus 25 ~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 47788888888854433321 11222 2456667777888888888888887654210 011 234566777
Q ss_pred HHHcCCChHHHHHHHHHHHhC---CCCC--C-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----cCHHhHHHHH
Q 017234 152 ACLCSGDVVTALSLFEIMVSS---EEYK--P-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS----VNVQTYESLI 221 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~---~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll 221 (375)
.+...|++++|...+++..+. .+.. | ...++..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 788888888888888877652 1111 2 2334556777788888888888888877654221 1235677777
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHHHHHHHH
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPS--IPILE----KVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLVK 292 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 292 (375)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888888888888888887764311111 11111 22334668888888888888876543211 1334566778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCC---CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 293 CYCELGRVDELEEQLETLTKCNQS---PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+...|++++|...+++....... +......+..+..++...|+.++|...+++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888776542111 111111256667778888888888888877664
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.4e-10 Score=112.07 Aligned_cols=166 Identities=11% Similarity=0.064 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
+..+|+.+...+.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 57889999999999999999999999998874 2357899999999999999999999999998721 33467899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
.++.+.|++++|.+.|++..+.... +..+|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999887654 78899999999999999999999999998864 345788999999999999999
Q ss_pred HHHHHHHHHHh
Q 017234 267 RVKSFLKFLLG 277 (375)
Q Consensus 267 ~a~~~~~~~~~ 277 (375)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=5.1e-11 Score=101.69 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=162.9
Q ss_pred hcCChHHHHHHHHHHHHHhhcC---C-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC------CC-CcCHhHHHHHH
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKG---N-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ------GI-KPDSAVFNSLI 150 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~---~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~li 150 (375)
..|++++|...++..++...+. . +....++..+...+...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 6788888888877766654433 2 235778899999999999999999999988754 22 23456899999
Q ss_pred HHHHcCCChHHHHHHHHHHHhCC-----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------C-CCcCHHhH
Q 017234 151 CACLCSGDVVTALSLFEIMVSSE-----E-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------G-FSVNVQTY 217 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~ 217 (375)
..+...|++++|.+.+++..+.. . .+....++..+...|...|++++|.+.+++..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999987620 1 1234567888999999999999999999988765 1 12246788
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCcC
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMMSL-------GIIPS-IPILEKVLEGLCARRKLDRV------KSFLKFLLGGGWKIN 283 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~~~a------~~~~~~~~~~~~~~~ 283 (375)
..+...|...|++++|...+++..+. ...+. ...+..+.......+....+ ...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999988753 11222 23333333333333332222 222221111 11233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 284 ENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55788899999999999999999998765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=4.5e-10 Score=100.82 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=175.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCC-Cc----CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----Chh
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGI-KP----DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-----NSK 180 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~ 180 (375)
|......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+...-.+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455567889999999999999875421 12 245788999999999999999999998775211111 245
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-cCHHhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIP 250 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 250 (375)
+++.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|.+.|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 6788999999999999999999987653 211 1245788899999999999999999999877 43 22367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCchHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKINENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHF 323 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 323 (375)
++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|...+++ .+..|.... .
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~-~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA-C 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH-H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH-H
Confidence 88889999999999999999999987632 12223446666677777888 6666666665 333333332 2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77899999999999999999998865
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=2.8e-10 Score=102.27 Aligned_cols=229 Identities=13% Similarity=0.044 Sum_probs=172.2
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHHC----CC--CcCHhHHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE-S-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI--KPDSAVFNSLICA 152 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p~~~~~~~li~~ 152 (375)
...|++++|...++..+......+. + ...+|..+...+...|+++.|...+++..+. +- +....+++.+..+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 5899999999997655544333222 1 4678899999999999999999999987643 11 1124578899999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CC-CcCHHhHHHHHHH
Q 017234 153 CLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAA----GF-SVNVQTYESLIHG 223 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~ 223 (375)
|...|++++|...|++..+...-.++ ..++..+...|...|++++|.+.|++..+. +. +....++..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999988762110111 247888999999999999999999988762 22 3357789999999
Q ss_pred HHccCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSL----GIIPSIPILEKVLEGLCARRK---LDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYC 295 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 295 (375)
|...|++++|...+++..+. +-+.....+..+...+...|+ +++|..+++.. +..|+ ...+..+...|.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHH
Confidence 99999999999999887653 111122345667778888898 66666666654 33333 446778899999
Q ss_pred HcCChHHHHHHHHHHHh
Q 017234 296 ELGRVDELEEQLETLTK 312 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (375)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.4e-09 Score=90.10 Aligned_cols=200 Identities=10% Similarity=-0.019 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
.|+..+......+.+.|++++|...|++..+...+++...+..+..++.+.|++++|++.|++..+. -+.+..++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4678899999999999999999999999998764478888888999999999999999999999972 13355778899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEKV 255 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 255 (375)
...+...|++++|.+.+++..+..+. +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999887543 45 56888888999999999999999999876 454 4667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
...+...| ...++.+...+ ..+...|.... ....+.+++|...+++..+.. |+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 77775544 44455555543 33444454443 334567899999999998854 5443
No 80
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.20 E-value=1.5e-08 Score=101.44 Aligned_cols=233 Identities=14% Similarity=0.118 Sum_probs=174.3
Q ss_pred CcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHH
Q 017234 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (375)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (375)
+..+|..+-.+ ...|++++|++.| .+- .|...|..++..+.+.|++++|.+.+....+.. +++...+.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsY----iKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~ 1172 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSY----IKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETE 1172 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHH----Hhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHH
Confidence 36668888888 7999999999995 321 578889999999999999999999999877764 44444556
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 228 (375)
++.+|++.+++++...+ .+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|
T Consensus 1173 LafaYAKl~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHHHhhcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 99999999998864443 33 366677888999999999999999999884 47999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHH
Q 017234 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (375)
++++|.+.+++. .+..+|..+..+|...|++..|....-. +..++..+..++..|.+.|.+++|..+++
T Consensus 1236 e~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1236 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999876 3457788888888888888887776543 33456667788888888888888888887
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHhh--CCHHHHHHHH
Q 017234 309 TLTKCNQSPEVLLHFFSGIIRLYALS--DRLDDVEYSV 344 (375)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 344 (375)
.....+ + .....|.-+...|.+. ++..++.++|
T Consensus 1305 ~aL~Le--r-aH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1305 AALGLE--R-AHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHhccC--h-hHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 665432 2 2222355555555543 2334444444
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=9e-09 Score=91.95 Aligned_cols=240 Identities=12% Similarity=-0.025 Sum_probs=171.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCH----hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh----hcH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTY 182 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~ 182 (375)
+......+...|++++|...+++..+.....+. .+++.+...+...|++++|...+++..+...-..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344555677899999999999998775422222 256777788889999999999999877521101122 235
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--c-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC--C--CHHH
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAA----GFS--V-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P--SIPI 251 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 251 (375)
..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778899999999999999987653 221 2 3456677888999999999999999988764211 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHH----HHHHHHHHcCChHHHHHHHHHHHhCCCCCc-hHHHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKI--NENMAQ----KLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFF 324 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 324 (375)
+..+...+...|++++|...+++.....-.+ ...... ..+..+...|++++|...+++.......+. .....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7788888999999999999999886531111 122111 233457899999999999998876443221 111126
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 325 SGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
..+...+...|++++|...+++..+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999999999999988654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.4e-09 Score=95.03 Aligned_cols=228 Identities=7% Similarity=-0.075 Sum_probs=170.6
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHHC----CC-Cc-CHhHHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI-KP-DSAVFNSLICA 152 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~li~~ 152 (375)
...|++++|...++.+.......+. ....++..+...|...|+++.|...+++..+. +- .+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 5899999999997654443333222 23667889999999999999999999887643 11 11 25578899999
Q ss_pred HHcCCChHHHHHHHHHHHhCC---CCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCcCHHhHHHHHHH
Q 017234 153 CLCSGDVVTALSLFEIMVSSE---EYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIA-----AGFSVNVQTYESLIHG 223 (375)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~~---~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~ 223 (375)
|...|++++|.+.|++..+.. +-.+ ...++..+...|...|++++|.+.|++..+ .... ...++..+...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHH
Confidence 999999999999999887621 1111 234677889999999999999999999877 4433 47888999999
Q ss_pred HHccCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMSLGI---IPS-IPILEKVLEGLCARRK---LDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYC 295 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 295 (375)
+.+.|++++|...+++..+... .|. ...+..+...+...++ +++|...++. .+..|+ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 9999999999999999876421 122 3455666666677788 6666666665 333333 345677889999
Q ss_pred HcCChHHHHHHHHHHHh
Q 017234 296 ELGRVDELEEQLETLTK 312 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (375)
..|++++|...|++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988754
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.2e-09 Score=80.25 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 325 SGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
..+...+.+.|++++|...++++.
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 334444444444444444444433
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=7.3e-09 Score=87.69 Aligned_cols=193 Identities=9% Similarity=-0.043 Sum_probs=120.0
Q ss_pred cCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-c-CH
Q 017234 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-V-NV 214 (375)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~ 214 (375)
.+...+..+...+.+.|++++|...|+++.+. .|+ ...+..+..+|.+.|++++|...|++..+..+. | ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 35667777788888888888888888888873 233 456777788888888888888888888876431 1 24
Q ss_pred HhHHHHHHHHHc--------cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 017234 215 QTYESLIHGSLK--------ARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285 (375)
Q Consensus 215 ~~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 285 (375)
.++..+..++.. .|++++|...|++..+.. |+ ......+. .+..+... -..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHH
Confidence 556677777777 888888888888887753 32 12221110 00000000 011
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhCCCCcc
Q 017234 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS----------DRLDDVEYSVGRMGKQGLSFK 355 (375)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~ 355 (375)
.+..+...|.+.|++++|...|+++.+...........+..+..+|... |++++|...|+++.+. .|+
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 1345566677777777777777777664433222222255666666655 6777777777777654 344
Q ss_pred Cch
Q 017234 356 SAE 358 (375)
Q Consensus 356 ~~~ 358 (375)
.+.
T Consensus 228 ~~~ 230 (261)
T 3qky_A 228 SPL 230 (261)
T ss_dssp CTH
T ss_pred ChH
Confidence 443
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=5e-09 Score=78.27 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=115.1
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
.+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 5677888999999999999999999887543 78889999999999999999999999998765 456778888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
..|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999998764 4467888999999999999999999999987744
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=4.8e-09 Score=88.82 Aligned_cols=191 Identities=10% Similarity=-0.032 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC---HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC-hh
Q 017234 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SK 180 (375)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~ 180 (375)
..+...+......+.+.|++++|...|+++.+.. +-+ ...+..+..++.+.|++++|+..|++..+...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3567888889999999999999999999999874 223 678889999999999999999999999983211122 34
Q ss_pred cHHHHHHHHHc--------CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 017234 181 TYDAFISGFSS--------LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252 (375)
Q Consensus 181 ~~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 252 (375)
.+..+..++.. .|++++|...|++..+..+. +......+... ...... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHH
Confidence 56677888888 99999999999999886533 33333222111 111000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCC
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWK--INENMAQKLVKCYCEL----------GRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~ 315 (375)
..+...|.+.|++++|...++.+.+..-. .....+..+..+|... |++++|...++++.+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 55667777888888888888887764211 1244566677777765 778888888888877543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=3.1e-09 Score=91.71 Aligned_cols=194 Identities=8% Similarity=-0.006 Sum_probs=111.4
Q ss_pred HHHHhccCChhHHHHHHHHHHHC----CCCcC-HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHH
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQ----GIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAF 185 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~l 185 (375)
...|...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|+..|++..+...-..+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888887777766542 22222 457777777888888888887777776651100001 2356666
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHCCCCc-C----HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH------HHHH
Q 017234 186 ISGFSSL-GNVDAMNKWYAANIAAGFSV-N----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI------PILE 253 (375)
Q Consensus 186 l~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~ 253 (375)
...|... |++++|...|++..+..... + ..+++.+...+...|++++|...|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7777774 77777777777665432110 1 345666677777777777777777777665322211 1455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH------HHHHHHHHHHH--HcCChHHHHHHHHHH
Q 017234 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINE------NMAQKLVKCYC--ELGRVDELEEQLETL 310 (375)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~~a~~~~~~~ 310 (375)
.+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|...|+.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 5666666777777777777766542 2221 12333444443 234455555555444
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=4.2e-09 Score=90.90 Aligned_cols=210 Identities=12% Similarity=-0.019 Sum_probs=153.9
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCC-hhcHHHHHHHHHcCCCHHHH
Q 017234 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKTYDAFISGFSSLGNVDAM 198 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-~~~~~~ll~~~~~~~~~~~a 198 (375)
++++|...+++. ...|...|++++|...|++..+. .+-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 44677899999999999988652 121122 46889999999999999999
Q ss_pred HHHHHHHHHCCCC---c--CHHhHHHHHHHHHcc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 017234 199 NKWYAANIAAGFS---V--NVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGII-PS----IPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 199 ~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 267 (375)
...|++..+.... + -..+++.+...|... |++++|...|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987653211 1 145788999999996 9999999999988764211 11 3568889999999999999
Q ss_pred HHHHHHHHHhCCCCcCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHH--hhC
Q 017234 268 VKSFLKFLLGGGWKINE------NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL----HFFSGIIRLYA--LSD 335 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~li~~~~--~~g 335 (375)
|...+++..+....... ..+..+..++...|++++|...+++..+.. |+... ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999875422211 256778889999999999999999987643 32211 11445566664 457
Q ss_pred CHHHHHHHHHHHHh
Q 017234 336 RLDDVEYSVGRMGK 349 (375)
Q Consensus 336 ~~~~A~~~~~~m~~ 349 (375)
++++|+..|+++..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 79999998877653
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=6e-08 Score=82.95 Aligned_cols=254 Identities=10% Similarity=-0.002 Sum_probs=167.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 78 ITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 78 i~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
=+.+-.|.+..++.- ...+.. ..+...-.-..+++...|++.... .-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e----~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE----IEKFSK--VTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHH----HHTSSC--CCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT
T ss_pred HHHHHhhHHHHHHHH----HHhcCc--cchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc
Confidence 333788888887775 443322 122233344567777777776421 12334334333333 33322
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHccCChHHHHHH
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
|+..|++..+ .+ .++..+...+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.
T Consensus 85 ----a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 ----NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp ----CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6788887776 33 45566666888889999999999999998877664 22677888889999999999999999
Q ss_pred HHHHHHCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHH
Q 017234 237 YEEMMSLGIIP-----SIPILEKVLEGL--CARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307 (375)
Q Consensus 237 ~~~m~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 307 (375)
+++|.+. .| +..+...+..++ ...| +.+.|..+|+++.+. .|+..+-..++.++.+.|++++|++.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999875 46 356667777663 3334 899999999998765 355334444555888999999999999
Q ss_pred HHHHhCC-----C---CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHH
Q 017234 308 ETLTKCN-----Q---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362 (375)
Q Consensus 308 ~~~~~~~-----~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 362 (375)
+.+.+.. . .|+.... ...+|......|+ +|.++++++++. .|+.|-...+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~-LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~ 292 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTF-LANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHH 292 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHH-HHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHH
T ss_pred HHHHHhcccccccccCCCCCHHH-HHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHH
Confidence 8766531 1 2443332 4344545555676 889999999865 4666655444
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=2.6e-08 Score=85.22 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=133.2
Q ss_pred HHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHH
Q 017234 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205 (375)
Q Consensus 127 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 205 (375)
|...|++..+.+ .++..++..+..++...|++++|++++.+... .+- .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777777655 45666677888899999999999999998865 221 135566778889999999999999999999
Q ss_pred HHCCCCc-----CHHhHHHHHHHH--HccC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017234 206 IAAGFSV-----NVQTYESLIHGS--LKAR--DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 206 ~~~~~~~-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
.+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 875 34 355555666553 3334 899999999998765 4653344445558889999999999998766
Q ss_pred hC-----CC----CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchH
Q 017234 277 GG-----GW----KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (375)
Q Consensus 277 ~~-----~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (375)
+. .. +-|+.+...+|......|+ +|.+++.++.+. .|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 53 11 3356667566666666776 888999999884 46544
No 91
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=3.3e-08 Score=90.81 Aligned_cols=225 Identities=8% Similarity=-0.016 Sum_probs=138.2
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---DVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
..+..+...|...+.++.+..-...+.+.-...++..+..+...|.+.| +.++|++.|++..+ .| .++...+..+
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-~g-~~~a~~~~~L 219 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-RG-TVTAQRVDSV 219 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH-CC-CHHHHHHHHH
Confidence 3444555555555544444443333322222234447777777777777 77778887777776 32 3444444555
Q ss_pred HHHHHcC----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-H--HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 186 ISGFSSL----GNVDAMNKWYAANIAAGFSVNVQTYESLIHG-S--LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 186 l~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
...|... +++++|.++|++.. . -+...+..+... + ...+++++|.+.|++..+.| +...+..+...
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 5566544 57778888887766 2 355556666555 3 45677888888888777765 45566666666
Q ss_pred HHhcC-----CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 259 LCARR-----KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 259 ~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
|. .| ++++|...|++.. .| +...+..|...|.. ..++++|...|++..+.|... . ...|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~---A--~~~Lg~ 362 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS---A--DFAIAQ 362 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT---H--HHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH---H--HHHHHH
Confidence 65 44 7788888777766 33 55666666666665 337778888887777655322 1 344555
Q ss_pred HHHh----hCCHHHHHHHHHHHHhCCC
Q 017234 330 LYAL----SDRLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 330 ~~~~----~g~~~~A~~~~~~m~~~~~ 352 (375)
.|.. ..+.++|...|++..+.|.
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5553 3477788888888777765
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.06 E-value=3.6e-07 Score=83.85 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred cHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc----CChHHHHHHHHHHHHCCCCCCHHHHH
Q 017234 181 TYDAFISGFSSLG---NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA----RDFDSVDRFYEEMMSLGIIPSIPILE 253 (375)
Q Consensus 181 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (375)
.+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|...|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5555555555555 556666666666555532 444334444444433 45666666666555 22 223333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhCCCCCchHHHHHH
Q 017234 254 KVLEG-L--CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG-----RVDELEEQLETLTKCNQSPEVLLHFFS 325 (375)
Q Consensus 254 ~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 325 (375)
.+... + ...++.++|...|++..+.| +...+..|...|. .| ++++|...|++.. .| +... +.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A--~~ 322 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAA--DY 322 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHH--HH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHH--HH
Confidence 44433 2 24556666666666665554 4445555555554 33 5666666665554 11 1111 33
Q ss_pred HHHHHHHh----hCCHHHHHHHHHHHHhCC
Q 017234 326 GIIRLYAL----SDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 326 ~li~~~~~----~g~~~~A~~~~~~m~~~~ 351 (375)
.|...|.. ..++++|...|++..+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 34444443 225666666666555544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=5e-09 Score=101.33 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=140.1
Q ss_pred HcCCChHHHHHHHHHHH--------hCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 154 LCSGDVVTALSLFEIMV--------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 154 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
...|++++|++.+++.. + ..+.+...+..+..++...|++++|.+.|++..+.... +...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67899999999999987 3 12345567888888999999999999999999887644 7888999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
..|++++|...|++..+.. +-+...+..+..++.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 3356788889999999999999 99999998764 4467889999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhhCC
Q 017234 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336 (375)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (375)
.|++..+ ..|+.... +..+..++...|+
T Consensus 556 ~~~~al~--l~P~~~~a-~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTA-RLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHH-HHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHH-HHHHHHHHHccCC
Confidence 9998877 44654333 6677777766555
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=2.7e-08 Score=81.21 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
..+......+...|++++|+..|++..+. .|+. ..|... .... ...........+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWT-----NVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHH
Confidence 33444455566777777777777777662 3432 233330 0000 00001111122445
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--h
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR--V 300 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~ 300 (375)
+|...|++++|...|++..+.. +-+...+..+...+...|++++|...|++.++.. +.+..++..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 5555555555555555555443 2234455555555555555555555555555432 2234445555444443332 2
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+.+...++.... |+.....+.....++...|++++|...|++..+
T Consensus 141 ~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 141 KKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 223333333221 211111122233344445555555555555553
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=5.1e-08 Score=80.55 Aligned_cols=190 Identities=8% Similarity=-0.006 Sum_probs=123.0
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH--HhHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV--QTYE 218 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 218 (375)
+...+..+...+.+.|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|.+.|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667777888999999999999998873211121 246777888899999999999999998876543111 2444
Q ss_pred HHHHHHHc------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017234 219 SLIHGSLK------------------ARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 219 ~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
.+..++.. .|++++|...|+++.+.. |+. ........ .+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----l~------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----LV------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----HH------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----HH------HHHHHH----
Confidence 44444443 355666666666666542 221 11111100 00 000000
Q ss_pred CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
......+...|.+.|++++|...|+++.+..+........+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456778899999999999999988654433222337788999999999999999999988764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.2e-08 Score=96.80 Aligned_cols=173 Identities=10% Similarity=-0.048 Sum_probs=143.1
Q ss_pred hccCChhHHHHHHHHHH--------HCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 119 GKVQNVPFAMHVFTSME--------AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 78899999999999988 432 3466789999999999999999999999998731 345678888999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (375)
..|++++|.+.|++..+.... +...|..+..++...|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987654 77889999999999999999 99999998865 4467889999999999999999999
Q ss_pred HHHHHHhCCCCcC-HHHHHHHHHHHHHcCC
Q 017234 271 FLKFLLGGGWKIN-ENMAQKLVKCYCELGR 299 (375)
Q Consensus 271 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 299 (375)
.++++.+. .|+ ...+..+..++...|+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99988765 354 5667777777766554
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=3e-08 Score=80.92 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
...+......+.+.|++++|...|++..+. .|+ ...|... .... ...........+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~---------------~~~~~~~~~~~lg 61 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDK---------------NSEISSKLATELA 61 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCT---------------TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcc---------------hhhhhHHHHHHHH
Confidence 444555667788999999999999999876 343 3334330 0000 0011112233455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-- 264 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-- 264 (375)
.+|.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..+.. +.+...+..+...|...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHH
Confidence 5566666666666666666655433 55666666666666666666666666666543 2334555555555544332
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.+.+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333333321 112222233334445556666666666666665
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=9.6e-09 Score=81.44 Aligned_cols=163 Identities=12% Similarity=-0.004 Sum_probs=104.5
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG-L 259 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~ 259 (375)
.+......+.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..... |+...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3445556667777777777777776654332 56667777777777777777777777765543 243332222111 1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhhCCHH
Q 017234 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLD 338 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 338 (375)
...++...+...+++..+.. +-+...+..+..++...|++++|...|+++.+..+.+. ... +..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a--~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV--KKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH--HHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH--HHHHHHHHHHhCCCC
Confidence 12223334667777776643 33567778888888888888888888888877654432 223 677788888888888
Q ss_pred HHHHHHHHHHh
Q 017234 339 DVEYSVGRMGK 349 (375)
Q Consensus 339 ~A~~~~~~m~~ 349 (375)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888877653
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=1.9e-08 Score=86.58 Aligned_cols=160 Identities=9% Similarity=-0.059 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK-VLEGLC 260 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~ 260 (375)
+..+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|...+++.... .|+...... ....+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 334444444555555555555554444322 4444555555555555555555555544433 223221111 112233
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhhCCHHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDD 339 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 339 (375)
..++.+.|...+++..+.. +.+...+..+...+...|++++|...++++.+.+.... ... +..++..|...|+.++
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a--~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT--RXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH--HHHHHHHHHHHCTTCH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH--HHHHHHHHHHcCCCCc
Confidence 4444455555555554432 33445555555555555555555555555555332211 111 5555555555565555
Q ss_pred HHHHHHHH
Q 017234 340 VEYSVGRM 347 (375)
Q Consensus 340 A~~~~~~m 347 (375)
|...|++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.9e-07 Score=76.30 Aligned_cols=128 Identities=9% Similarity=-0.028 Sum_probs=53.1
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCCcCHHhH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG----NVDAMNKWYAANIAAGFSVNVQTY 217 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~ 217 (375)
++..+..+...|...+++++|++.|++..+ . -+...+..|...|.. + ++++|.++|++..+.| +..++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 344444444444444444444444444444 1 123333334433433 3 4444444444444332 33334
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 017234 218 ESLIHGSLK----ARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCA----RRKLDRVKSFLKFLLG 277 (375)
Q Consensus 218 ~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 277 (375)
..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .++.++|...+++..+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 444444443 44444444444444443210 013334444444443 3444444444444443
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=2.2e-06 Score=73.79 Aligned_cols=218 Identities=8% Similarity=-0.012 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH----HcC---CC
Q 017234 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF----SSL---GN 194 (375)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~----~~~---~~ 194 (375)
.++|+++++.+...+ +-+..+|+.--.++...| ++++++++++.+... .+-+..+|+.--..+ ... ++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence 346777776666653 224455666666666666 677777777777652 123334444332222 333 56
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD--SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK------LD 266 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~ 266 (375)
+++++++++.+.+...+ |..+|+--.-.+.+.|.++ ++++.++++.+.+ .-|-..|+.-.....+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777766544 6667766666666667666 7777777777665 3455666666555555555 67
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-CCC-chHHHHHHHHHHHHHhhCCHHHHHHH
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEEQLETLTKCN-QSP-EVLLHFFSGIIRLYALSDRLDDVEYS 343 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (375)
++.+.++.++... +-|...|+.+-..+.+.|+... +..+..++.+.+ ..| +... +..+.+.|.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a--l~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA--LETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHH--HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHH--HHHHHHHHHccCCHHHHHHH
Confidence 7777777776654 4467777777777777766333 444555554432 112 1222 66777777777888888888
Q ss_pred HHHHHh
Q 017234 344 VGRMGK 349 (375)
Q Consensus 344 ~~~m~~ 349 (375)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887764
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.4e-08 Score=93.54 Aligned_cols=157 Identities=9% Similarity=-0.029 Sum_probs=120.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHH
Q 017234 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235 (375)
Q Consensus 156 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 235 (375)
.|++++|.+.|++..+. -+.+...+..+...+...|++++|.+.|++..+.... +...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998862 2345678889999999999999999999999887644 78889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 017234 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL---GRVDELEEQLETLTK 312 (375)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 312 (375)
.|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998865 4457889999999999999999999999998764 44678889999999999 999999999999988
Q ss_pred CCCCC
Q 017234 313 CNQSP 317 (375)
Q Consensus 313 ~~~~~ 317 (375)
.+...
T Consensus 157 ~~p~~ 161 (568)
T 2vsy_A 157 QGVGA 161 (568)
T ss_dssp HTCCC
T ss_pred cCCcc
Confidence 66544
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=7.2e-08 Score=83.77 Aligned_cols=130 Identities=8% Similarity=-0.015 Sum_probs=61.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIP 250 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 250 (375)
+|+.+...|...|++++|...|++..+. |-.. -..+++.+...|.. |++++|+..|++..+. +-.+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4444455555555555555555543321 1000 12344555555555 5565555555554432 1000 023
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
++..+...+...|++++|...+++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4555555566666666666666555432 11111 1234444455555566666666666555
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=4e-07 Score=74.43 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC----ChHHHHH
Q 017234 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR----DFDSVDR 235 (375)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~ 235 (375)
.+|++.|++..+ .-+...+..+...|...+++++|.++|++..+.| +...+..|-..|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 357788888887 2567788889999999999999999999998875 67778888888888 7 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHH----cCChHHHHHH
Q 017234 236 FYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCE----LGRVDELEEQ 306 (375)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 306 (375)
.|++..+.| +...+..|...|.. .+++++|..++++..+.|.. .++..+..|...|.. .+++++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998765 56678888888877 88999999999999987621 127788889999988 8899999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhCCC
Q 017234 307 LETLTKCNQSPEVLLHFFSGIIRLYALS-D-----RLDDVEYSVGRMGKQGL 352 (375)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 352 (375)
|++..+.+-.+ .. +..|...|... | ++++|...|++..+.|.
T Consensus 152 ~~~A~~~~~~~--~a--~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLSRTG--YA--EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTSCTT--HH--HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCH--HH--HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99998863223 23 56677777654 3 89999999999999886
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=4.9e-08 Score=84.84 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=139.9
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 017234 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 199 (375)
.|++++|.+++++..+.. +.. +.+ .+++++|...|++. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 456677777777665431 111 112 46777777776654 34566778888888
Q ss_pred HHHHHHHHC----CCCc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHH
Q 017234 200 KWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPS--IPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 200 ~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a 268 (375)
+.|.+..+. +-.+ -..+|+.+...|...|++++|...|++..+. | .+. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888776543 1111 1457888889999999999999999887643 2 122 3577888888888 999999
Q ss_pred HHHHHHHHhC----CCCc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC---CchHHHHHHHHHHHHHhhCCHHHH
Q 017234 269 KSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQS---PEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 269 ~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
...+++..+. |-.+ ...++..+...|...|++++|...|++..+.... +......+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988653 1111 1467888999999999999999999988763211 111111367777788888999999
Q ss_pred HHHHHHHH
Q 017234 341 EYSVGRMG 348 (375)
Q Consensus 341 ~~~~~~m~ 348 (375)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999988
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=1.7e-06 Score=74.46 Aligned_cols=235 Identities=9% Similarity=0.028 Sum_probs=180.6
Q ss_pred hcCC-hHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHH----H
Q 017234 82 QSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICAC----L 154 (375)
Q Consensus 82 ~~~~-~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~ 154 (375)
+.+. .++|++. .+.+...++.+..+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ .
T Consensus 44 ~~~e~s~~aL~~----t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 44 KAEEYSERALHI----TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HTTCCSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHH----HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 4444 4688888 66777777778888998888888888 9999999999998875 33566676655555 4
Q ss_pred cC---CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 155 CS---GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 155 ~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
+. +++++++++++.+.+. -+-+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |-.+|+.-...+...|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred hccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 55 7899999999999873 2567778887777777888887 999999999998765 88888887777777776
Q ss_pred ------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcCCh
Q 017234 230 ------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 230 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 300 (375)
++++++.++++.... +-|...|+.+-..+.+.|+. +.+..+..++.+.+ -..+...+..+...|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 889999999988876 56788898888888888874 44556666665432 134778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
++|.++++.+.+. ..|...-+ |+..
T Consensus 275 ~~A~~~~~~l~~~-~Dpir~~y-W~~~ 299 (306)
T 3dra_A 275 NESRTVYDLLKSK-YNPIRSNF-WDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHT-TCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHhc-cChHHHHH-HHHH
Confidence 9999999999863 34544442 5443
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=4e-07 Score=78.42 Aligned_cols=162 Identities=7% Similarity=-0.026 Sum_probs=81.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCChh----cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cC----HHhHHH
Q 017234 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSK----TYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VN----VQTYES 219 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ 219 (375)
.+..+...|++++|.+++++..+.....|+.. .+..+...+...+++++|...|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566667777777777777665222222211 2223445555556666666666666553221 11 224566
Q ss_pred HHHHHHccCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMS----L-GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQ 288 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 288 (375)
+...|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 11111 124555555555566666665555554321 11111 34455
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHH
Q 017234 289 KLVKCYCELGR-VDELEEQLETL 310 (375)
Q Consensus 289 ~li~~~~~~g~-~~~a~~~~~~~ 310 (375)
.+..+|.+.|+ +++|...+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555553 35555555443
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=2.1e-07 Score=76.83 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCC-c-CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh----
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK-P-DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK---- 180 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---- 180 (375)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|++..+. .|+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCcHHH
Confidence 3456677788899999999999999999876321 1 1357888999999999999999999999873 34432
Q ss_pred cHHHHHHHHHc------------------CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSS------------------LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 181 ~~~~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
.+..+..++.. .|++++|...|+++.+..+. +...+.+....- .+...+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~- 147 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH-
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH-
Confidence 34444555543 57899999999999987533 333333221110 0111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 017234 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (375)
.....+...+.+.|++++|...++.+++.. |+ ...+..+..+|.+.|++++|.+.++.+...++.
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112345667888999999999999988753 33 256788889999999999999999988876543
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=4.9e-08 Score=92.49 Aligned_cols=154 Identities=12% Similarity=-0.019 Sum_probs=119.4
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHH
Q 017234 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 200 (375)
.|++++|.+.+++..+.. +-+...|..+...+.+.|++++|.+.|++..+. -+.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999988763 335789999999999999999999999999972 24457788899999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 017234 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---RKLDRVKSFLKFLLG 277 (375)
Q Consensus 201 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 277 (375)
.+++..+.... +...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+... |+.++|...+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999887644 78899999999999999999999999998875 34578889999999999 999999999999987
Q ss_pred CC
Q 017234 278 GG 279 (375)
Q Consensus 278 ~~ 279 (375)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=9.6e-09 Score=79.15 Aligned_cols=108 Identities=6% Similarity=0.004 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (375)
.|++++|++.++........ +...+..+...|.+.|++++|.+.|++..+.. +-+...|..+..++...|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34444444444443332111 22333344444444444444444444444432 22344444444444444555555555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChHH
Q 017234 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (375)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (375)
|++..+.. +-+..++..+...|.+.|++++
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 44444432 1234444444444555554443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=7.2e-08 Score=82.88 Aligned_cols=164 Identities=8% Similarity=-0.010 Sum_probs=90.2
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH-HH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE-SL 220 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l 220 (375)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34455555556666666666666666665521 2234455556666666666666666666655443 2322222 12
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHHcCC
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGR 299 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~ 299 (375)
...+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..-. .+...+..+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 222445555666666666665543 334556666666666666666666666666554211 124556666666666666
Q ss_pred hHHHHHHHHHH
Q 017234 300 VDELEEQLETL 310 (375)
Q Consensus 300 ~~~a~~~~~~~ 310 (375)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66666665543
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=1.2e-08 Score=78.67 Aligned_cols=138 Identities=12% Similarity=-0.015 Sum_probs=68.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHH
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 233 (375)
..|++++|+..++.... ..| +...+-.+...|.+.|++++|.+.|++..+..+. +..+|..+..+|...|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 34455555555555543 122 2233444555555556666666666555554432 455555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
...|++..+.+ +-+...+..+...|.+.|+.+++.. ++++..+.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66665555543 2234555555555555555544333 234444422 223444444444444443
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.86 E-value=4.8e-07 Score=86.59 Aligned_cols=220 Identities=7% Similarity=0.011 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHH-HHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHH
Q 017234 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204 (375)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 204 (375)
.+..+|++.... .+-+...|-..+..+...|+.++|. ++|++... .++.+...|-..+....+.|+++.|.++|++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345667776654 2446778888888888889999997 99999986 2445555677788888899999999999999
Q ss_pred HHHCCC---------Cc------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 017234 205 NIAAGF---------SV------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCAR 262 (375)
Q Consensus 205 m~~~~~---------~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~ 262 (375)
+.+... .| ...+|...+....+.|+.+.|..+|....+. + .+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 876420 13 2346888888888899999999999999876 3 12223343333333344
Q ss_pred -CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 263 -RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 263 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
++.+.|..+|+..++. ++-+...+...++.....|+.+.|..+|++.......+......|...+.--.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4599999999999886 45567778889998889999999999999998865543344445999999889999999999
Q ss_pred HHHHHHHhC
Q 017234 342 YSVGRMGKQ 350 (375)
Q Consensus 342 ~~~~~m~~~ 350 (375)
.+.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.4e-08 Score=77.58 Aligned_cols=161 Identities=9% Similarity=-0.024 Sum_probs=83.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHH-H
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-F 189 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~-~ 189 (375)
+......+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...+++..+. .|+...+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3344455555666666666665554432 224455556666666666666666666655441 2222222111111 1
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 268 (375)
...+...+|...+++..+..+. +...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1111222345566665554332 45666666666666666666666666666553222 234555666666666666666
Q ss_pred HHHHHHHH
Q 017234 269 KSFLKFLL 276 (375)
Q Consensus 269 ~~~~~~~~ 276 (375)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3.1e-06 Score=72.78 Aligned_cols=209 Identities=8% Similarity=0.001 Sum_probs=143.7
Q ss_pred HHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhc---HHHHHHHHHcCCCHHHHHHHHHHHH
Q 017234 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT---YDAFISGFSSLGNVDAMNKWYAANI 206 (375)
Q Consensus 130 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~ 206 (375)
.+..+......|+..+...+...+.-.-+ .++.. ....+... +...+..+...|++++|.+++++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~-----~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII-----HFYEV-----LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHHT-----TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhCC-----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44444444446777777777666543221 11111 11222222 3334677899999999999999988
Q ss_pred HCCC-CcCH----HhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017234 207 AAGF-SVNV----QTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PS----IPILEKVLEGLCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 207 ~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (375)
+... .|+. ..+..+...+...|++++|...|++....... ++ ..+++.+...|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7532 2232 23445777777888999999999999874322 22 3368999999999999999999999987
Q ss_pred h----C-CCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhhCC-HHHHHHHHH
Q 017234 277 G----G-GWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDR-LDDVEYSVG 345 (375)
Q Consensus 277 ~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 345 (375)
+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ....|..+..+|.+.|+ +++|.+.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL-IGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT-HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 4 1 22222 347888999999999999999999887642 22222 22338899999999995 699999998
Q ss_pred HHHh
Q 017234 346 RMGK 349 (375)
Q Consensus 346 ~m~~ 349 (375)
+...
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=6.3e-07 Score=72.92 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 224 (375)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|.+.|++..+... .+...+..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 34555666667777777777776553 35666677777777777777777777777666543 2566666677777
Q ss_pred HccCChHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 225 LKARDFDSVDRFYEEMMSLGIIP---------------SIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
...|++++|...|++..+..... ....+..+..++...|++++|...++...+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777766643111 0144555555555666666666666665543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=5.4e-07 Score=73.31 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHH
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~ 188 (375)
..+..+...+...|++++|...|++.. .|+...|..+..++.+.|++++|...|++..+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345566677778888888888887663 567778888888888888888888888887762 13455677778888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCc---------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSV---------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 244 (375)
+...|++++|.+.|++..+..... +...+..+..++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888877764321 12667777888888888888888888887653
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.76 E-value=1.8e-06 Score=82.59 Aligned_cols=218 Identities=10% Similarity=0.029 Sum_probs=165.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCChhHHH-HHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCC--
Q 017234 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAM-HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-- 173 (375)
Q Consensus 97 ~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-- 173 (375)
+++.....+.+...|-..+..+.+.|+.+.|. ++|++.... .+.+...|-..+...-+.|++++|.++|+.+.+..
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 55655556668888999999999999999996 999998865 34567778888888999999999999999998620
Q ss_pred ------CCCCC------------hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc-CChHHHH
Q 017234 174 ------EYKPN------------SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVD 234 (375)
Q Consensus 174 ------~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~ 234 (375)
.-.|+ ..+|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHH
Confidence 00132 2367788888888999999999999998861112233343333333333 5599999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
++|+...+. .+-+...+...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+++.+
T Consensus 491 ~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 491 KVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999886 23456667778887888999999999999998864322 346788999999999999999999999988
Q ss_pred CCCC
Q 017234 313 CNQS 316 (375)
Q Consensus 313 ~~~~ 316 (375)
..+.
T Consensus 570 ~~P~ 573 (679)
T 4e6h_A 570 KFPE 573 (679)
T ss_dssp HSTT
T ss_pred hCCC
Confidence 6543
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.3e-06 Score=73.53 Aligned_cols=168 Identities=7% Similarity=-0.024 Sum_probs=100.6
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---cC--
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGFS---VN-- 213 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~-- 213 (375)
...+...+..+...|++++|.+.+++..+.....++. ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445556677778888888888887776622111111 12333455566677777777777776643211 11
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCc-
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPS-----IPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKI- 282 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~- 282 (375)
..+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346777777777777777777777776521 00111 1466677777777777777777777665321 111
Q ss_pred CHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 017234 283 NENMAQKLVKCYCELGRVDEL-EEQLETL 310 (375)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 310 (375)
-..+|..+..+|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 145666677777777777777 5555554
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=3.7e-06 Score=72.31 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=126.7
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-----HHhHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--H
Q 017234 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN-----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGI---IPS--I 249 (375)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~ 249 (375)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4555677888999999999999998877543211 12344566677888999999999999875321 222 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCchH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLG---G-GWKI--NENMAQKLVKCYCELGRVDELEEQLETLTKCN---QSPEVL 320 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 320 (375)
.+++.+...|...|++++|...+++..+ . +-.+ ...++..+...|...|++++|...+++..+.. -.+...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 2 1111 12588899999999999999999999876431 111122
Q ss_pred HHHHHHHHHHHHhhCCHHHH-HHHHHHHHh
Q 017234 321 LHFFSGIIRLYALSDRLDDV-EYSVGRMGK 349 (375)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 349 (375)
...|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 33388899999999999999 777877654
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=2.9e-07 Score=74.16 Aligned_cols=136 Identities=11% Similarity=-0.040 Sum_probs=64.9
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc--
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-- 282 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 282 (375)
..++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444331 1111 1234444555555555555555555554332 1011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 283 NENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
...++..+...+...|++++|...+++..+. ...+......+..+...+...|++++|...+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1233455555566666666666666554321 111111122245566666666666666666665554
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=5.2e-08 Score=83.49 Aligned_cols=195 Identities=7% Similarity=-0.048 Sum_probs=105.4
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556666666777777777777777666521 224556666667777777777777777776665433 566677777
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
.+|...|++++|...|++..+.+ |+. ..+...+....+. .+.. -+..........+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 77777777777777776665432 100 0011111111111 1111 11122222334444444433222 25777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhC
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 350 (375)
++|.+.++...+. .|+.... ...+-..+.+. +.+++|.++|.+..+.
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHI-RAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHH-THHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhcc--ccchhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777777766553 3443321 33333334444 5677788888777654
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=7.5e-07 Score=69.10 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555666666677777777666666543 2345666666666777777777777777766543 33566677777777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
...|++++|...+++..+..... .....+-.....+.+.|++++|...+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776643322 112112333334666777777777776654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=7.5e-07 Score=69.10 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=74.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
.+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555566666666666666666554332 45566666666666666666666666666543 234556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHHcCChHHHHHHHHHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQ--KLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~ 310 (375)
..|++++|...+++..+.. +.+...+. .....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777776666542 22333332 2333355667777777666654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=8.1e-07 Score=65.01 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=4.6
Q ss_pred cCCChHHHHHHHH
Q 017234 155 CSGDVVTALSLFE 167 (375)
Q Consensus 155 ~~g~~~~a~~~~~ 167 (375)
..|++++|.+.++
T Consensus 21 ~~~~~~~A~~~~~ 33 (125)
T 1na0_A 21 KQGDYDEAIEYYQ 33 (125)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3333333333333
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=2.2e-05 Score=68.49 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=146.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC-C-C
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-G-D 158 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~ 158 (375)
+....++|++. .+++...++.+..+|+.--..+...| ++++++++++.+.... +-+..+|+.-..++.+. + +
T Consensus 66 ~~e~se~AL~l----t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 66 KEEKSERALEL----TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TTCCSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred hCCCCHHHHHH----HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34445678888 66777777778888888877777778 5899999999988775 33777888777766665 6 7
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC-
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--------AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD- 229 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~- 229 (375)
+++++++++.+.+. -+.|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |..+|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 88999999988862 2445666665444444444444 888888888887665 88888888877777775
Q ss_pred ------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC----
Q 017234 230 ------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL--------------------DRVKSFLKFLLGGG---- 279 (375)
Q Consensus 230 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~---- 279 (375)
++++++.+++..... +-|...|+.+-..+.+.|+. .....+...+...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 577788887777654 45667777766666655543 12222222222111
Q ss_pred -CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 280 -WKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 280 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
-.++......+++.|...|+.++|.++++.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 02455566666666666666666666666664
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1e-06 Score=64.39 Aligned_cols=95 Identities=13% Similarity=0.221 Sum_probs=44.7
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
.+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444555555555555555444322 134444444455555555555555555444432 223444444444455
Q ss_pred hcCCHHHHHHHHHHHHh
Q 017234 261 ARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~ 277 (375)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554443
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=1.2e-06 Score=64.75 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=3.5
Q ss_pred cCChHHHHHH
Q 017234 227 ARDFDSVDRF 236 (375)
Q Consensus 227 ~g~~~~a~~~ 236 (375)
.|++++|...
T Consensus 59 ~~~~~~A~~~ 68 (131)
T 2vyi_A 59 LGNYAGAVQD 68 (131)
T ss_dssp TTCHHHHHHH
T ss_pred hhchHHHHHH
Confidence 3333333333
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.2e-06 Score=64.95 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=7.9
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 017234 149 LICACLCSGDVVTALSLFEIM 169 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m 169 (375)
....+.+.|++++|++.|++.
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~a 39 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEA 39 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-06 Score=65.20 Aligned_cols=12 Identities=0% Similarity=-0.011 Sum_probs=4.2
Q ss_pred HcCChHHHHHHH
Q 017234 296 ELGRVDELEEQL 307 (375)
Q Consensus 296 ~~g~~~~a~~~~ 307 (375)
..|++++|.+.+
T Consensus 96 ~~~~~~~A~~~~ 107 (133)
T 2lni_A 96 AMKDYTKAMDVY 107 (133)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 333333333333
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=1e-06 Score=67.62 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 224 (375)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+..+. ++..|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 33344444444444444444444444311 122333444444444444444444444444443322 333444444444
Q ss_pred HccCChHHHHHHHHHHHH
Q 017234 225 LKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~ 242 (375)
...|++++|...|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=5e-05 Score=66.19 Aligned_cols=231 Identities=10% Similarity=0.010 Sum_probs=167.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
+.+-....+.+..++|+++++.+...+ +-+..+|+.--.++...| .+++++++++.+... .+-+..+|+.-...+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 333333444556678999999999875 336778888888888888 599999999999972 3456677876666665
Q ss_pred cC-C-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 191 SL-G-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD--------SVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 191 ~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
+. + ++++++++++.+.+...+ |..+|+--.-.+.+.|.++ ++++.++++.+.+ .-|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55 6 889999999999988755 8888887766666666666 8999999999876 467888888888888
Q ss_pred hcCC-------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhC
Q 017234 261 ARRK-------LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV--------------------DELEEQLETLTKC 313 (375)
Q Consensus 261 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~ 313 (375)
+.++ ++++.+.++++.... +-|...|+-+-..+.+.|.. ........++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8776 688888888888764 45788888777777776654 2233333333222
Q ss_pred C----C-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 314 N----Q-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 314 ~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
+ . .+.... ..-+++.|...|+.++|.++++.+.++
T Consensus 292 ~~~~~~~~~s~~a--l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLA--LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 1 122333 788999999999999999999998654
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=5.5e-07 Score=77.07 Aligned_cols=194 Identities=8% Similarity=-0.040 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
+...+..+...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...+++..+. -+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677888889999999999999999988763 337888999999999999999999999998862 234567788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
.++...|++++|...|++..+.... +...+...+....+ ...+. -+..........+......+ ..+ ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999988765321 11111111221111 11111 12223333334444443333 222 368888
Q ss_pred HHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 017234 267 RVKSFLKFLLGGGWKINE-NMAQKLVKCYCEL-GRVDELEEQLETLTK 312 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 312 (375)
+|.+.++...+. .|+. .....+-..+.+. +.+++|.++|....+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 998888887765 3443 3444444445554 668889999987765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1e-06 Score=65.06 Aligned_cols=117 Identities=9% Similarity=0.047 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 334444555555555555555555555441 1223444455555555555555555555555544322 3445555555
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
.+...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555555554432 123344444444444444
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.2e-07 Score=72.69 Aligned_cols=157 Identities=11% Similarity=-0.054 Sum_probs=93.9
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-cCHHhHHHHHHHHHccC
Q 017234 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKAR 228 (375)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g 228 (375)
...|++++|.++++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 345666777664444433 11123455666666677777777777777665541 111 13456667777777778
Q ss_pred ChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHHc
Q 017234 229 DFDSVDRFYEEMMSL----GIIP--SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWK-INENMAQKLVKCYCEL 297 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~ 297 (375)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888877777766542 1111 1345666777777888888888888776532 211 1123456777888888
Q ss_pred CChHHHHHHHHHHHh
Q 017234 298 GRVDELEEQLETLTK 312 (375)
Q Consensus 298 g~~~~a~~~~~~~~~ 312 (375)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888887776543
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=2e-06 Score=63.83 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=34.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (375)
....|.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...|..+..+|...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 3333444444444444444333322 1223333333334444444444444444433322 1223333344444444444
Q ss_pred hHHHHHHHHHHHh
Q 017234 300 VDELEEQLETLTK 312 (375)
Q Consensus 300 ~~~a~~~~~~~~~ 312 (375)
+++|.+.|++..+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=2e-06 Score=63.82 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=74.5
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017234 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (375)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (375)
+...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3455666666777777777777777776665432 56666777777777777777777777766653 334566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
.+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777766542 223344555555554443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.9e-06 Score=72.75 Aligned_cols=189 Identities=10% Similarity=-0.112 Sum_probs=131.8
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHH-------HHHHHcCCChHHHHHHHHHHHhCCCCCCChh------------
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL-------ICACLCSGDVVTALSLFEIMVSSEEYKPNSK------------ 180 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------------ 180 (375)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCcccc
Confidence 5789999999999998874 2256678777 4555555556666655555443 333321
Q ss_pred ----------cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--
Q 017234 181 ----------TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-- 248 (375)
Q Consensus 181 ----------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 248 (375)
..-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 12235566778899999999998887765 333366666678888999999999997554321 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 017234 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...++
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23567777888899999999999998875443253 34566677788889999999999999888553
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=1.6e-06 Score=68.30 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG-LCARRKL--DRV 268 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~a 268 (375)
.|++++|...+++..+.... +...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444443321 34444444444445555555555554444332 1233344444444 3444444 555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
...++++.+.. +.+...+..+...|...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555544432 22344444455555555555555555555544
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=6.6e-07 Score=70.59 Aligned_cols=120 Identities=12% Similarity=0.144 Sum_probs=62.1
Q ss_pred ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHH-HHcCCCH--H
Q 017234 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNV--D 196 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 196 (375)
..|++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455555555555555442 2244555556666666666666666666555411 2233444445555 4455555 6
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
+|...|++..+..+. +...+..+...+...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666655554322 4455555555566666666666666655554
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=3.9e-06 Score=64.31 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=44.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 295 (375)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++..+.. +.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444444555555555555444432 2234444444444445555555555555444432 223344444444555
Q ss_pred HcCChHHHHHHHHHHHh
Q 017234 296 ELGRVDELEEQLETLTK 312 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (375)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544444
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7.1e-06 Score=74.49 Aligned_cols=167 Identities=8% Similarity=-0.052 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCH----HhHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-HHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNV----QTYESLIHGSLKARDFDSVDRFYEEMMS----LGIIPS-IPI 251 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~ 251 (375)
+..+...|...|++++|.+.+......-.. ++. .+.+.+-..+...|+++.|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555566666665555544331100 011 1122222233344556666655555432 122222 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---CcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCC-chHHH
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGG--GW---KINENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSP-EVLLH 322 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~-~~~~~ 322 (375)
+..+...+...|++++|..+++++... +. .....++..+++.|...|++++|...+++.... ...| .....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 555566666666666666666655331 11 111334555666666666666666666554321 1111 11122
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 323 FFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 24555555566666666666655554
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2e-06 Score=75.63 Aligned_cols=142 Identities=13% Similarity=0.016 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC--------------HHhHHHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--------------VQTYESLI 221 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll 221 (375)
+++++|...|+...+. .| +...+..+...+.+.|++++|...|++..+...... ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4455565555544331 23 455677777788888888888888888776543321 34555555
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChH
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 301 (375)
.+|.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|+++++.. +.+..++..+..++.+.|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443 2234445555555555555555555555554432 223444444555555555555
Q ss_pred HH
Q 017234 302 EL 303 (375)
Q Consensus 302 ~a 303 (375)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 144
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=0.00032 Score=64.84 Aligned_cols=124 Identities=8% Similarity=-0.001 Sum_probs=82.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 294 (375)
.|...+....+.++.+.|..+|+.. ... ..+...|......-.. .++.+.|..+|+...+.- +-++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444455555667788888898888 321 2233444332222222 336888999998887752 23455566677777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.+.|+.+.|..+|+++.+ .... |...+.-=...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~~~l--w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----TSRM--WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----BHHH--HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----HHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999988721 2333 88888777788999999888887764
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=8.5e-07 Score=67.91 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 293 (375)
...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344444445555555555555555554432 2234444445555555555555555555554432 2233444445555
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 017234 294 YCELGRVDELEEQLETLTK 312 (375)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~ 312 (375)
|...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.6e-06 Score=74.92 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=104.7
Q ss_pred CChhHHHHHHHHHHHCCCCc-CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----------------hhcHHH
Q 017234 122 QNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----------------SKTYDA 184 (375)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------~~~~~~ 184 (375)
+++++|...++...+. .| +...+..+...+.+.|++++|+..|++..+. .|+ ..+|..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHH
Confidence 3444455444433322 22 4567778888888888888888888888762 343 367778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH
Confidence 888888888888888888888776543 67788888888888888888888888887764 3456677777777778887
Q ss_pred HHHH-HHHHHHHH
Q 017234 265 LDRV-KSFLKFLL 276 (375)
Q Consensus 265 ~~~a-~~~~~~~~ 276 (375)
.+++ ...++.|.
T Consensus 280 ~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 280 QLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777 44555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=1.4e-06 Score=66.74 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=45.3
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
.+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|...|++....+ +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344444455555555555555554444322 44444455555555555555555555544432 122344444444555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 017234 261 ARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~ 277 (375)
..|++++|...|+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1e-05 Score=58.33 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=7.8
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 017234 290 LVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~ 310 (375)
+..++...|++++|...+++.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.2e-07 Score=73.29 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
..+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.. |+.... +..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDI-RNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHH-HHHHHH
Confidence 556666677777777777777777776653 3456677777777777777777777777776643 332221 566666
Q ss_pred HHHhhCCHHHHH-HHHHHHHhCC
Q 017234 330 LYALSDRLDDVE-YSVGRMGKQG 351 (375)
Q Consensus 330 ~~~~~g~~~~A~-~~~~~m~~~~ 351 (375)
++...|+.+++. ..+..|...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666665 5555555443
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=4.1e-07 Score=73.32 Aligned_cols=127 Identities=10% Similarity=0.024 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc---------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSV---------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 246 (375)
+..+...+...|++++|...|++..+..... ....+..+..+|...|++++|...+++..+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 4444444555555555555555544432110 12567777777888888888888888777654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 017234 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE-EQLETL 310 (375)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~ 310 (375)
.+...+..+..++...|++++|...+++..+.. +.+..++..+..++...++.+++. ..+..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888888888877653 335666777777777766666655 444444
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=5.3e-06 Score=69.99 Aligned_cols=189 Identities=7% Similarity=-0.089 Sum_probs=133.4
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCChhcHHHH-------HHHHHcCCCHHHHHHHHHHHHHCCCCcC--------------
Q 017234 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAF-------ISGFSSLGNVDAMNKWYAANIAAGFSVN-------------- 213 (375)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------- 213 (375)
..++.+.|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+..-. ++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCcccc
Confidence 6899999999999999832 2334566665 333333333444444333332 22221
Q ss_pred --------HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--
Q 017234 214 --------VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-- 283 (375)
Q Consensus 214 --------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 283 (375)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234456778889999999999999988754 554455556668889999999999998654432 111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
...+..+-.++...|++++|+..|++.......|............++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3467788899999999999999999998543325433323566778899999999999999999986
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.3e-05 Score=57.70 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..+.... +...+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 333444444444444444444444331 1122333333444444444444444444444333221 3333444444444
Q ss_pred ccCChHHHHHHHHHHH
Q 017234 226 KARDFDSVDRFYEEMM 241 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~ 241 (375)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444443
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.0005 Score=59.59 Aligned_cols=170 Identities=9% Similarity=-0.038 Sum_probs=96.2
Q ss_pred hcCCh-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------hhHHHHHHHHHHHCCCCcCHhHHHHHH
Q 017234 82 QSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN----------VPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (375)
Q Consensus 82 ~~~~~-~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (375)
+.|.. ++|++. .+.+...++.+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.
T Consensus 41 ~~~e~s~eaL~~----t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHH----HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44444 366666 566666666666666554444433332 456666776666554 33666666666
Q ss_pred HHHHcCC--ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc
Q 017234 151 CACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 151 ~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 227 (375)
.++.+.| .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++++.+..+. |..+|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 6666666 3667777777776622 3455566655555555665 46777777777766554 666666655554443
Q ss_pred --------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 228 --------------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 228 --------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
+.++++++.++...... +-|...|+.+-..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 23555666665555543 334455554443333
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=6e-06 Score=58.99 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=4.7
Q ss_pred ccCChHHHHHHHH
Q 017234 226 KARDFDSVDRFYE 238 (375)
Q Consensus 226 ~~g~~~~a~~~~~ 238 (375)
..|++++|...|+
T Consensus 18 ~~~~~~~A~~~~~ 30 (112)
T 2kck_A 18 DAGNYTESIDLFE 30 (112)
T ss_dssp SSCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 3333333333333
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.3e-05 Score=59.03 Aligned_cols=17 Identities=12% Similarity=-0.123 Sum_probs=6.1
Q ss_pred HHHHHccCChHHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFY 237 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~ 237 (375)
..++...|++++|...|
T Consensus 45 a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 45 AAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 33333333333333333
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=1.1e-05 Score=57.59 Aligned_cols=97 Identities=10% Similarity=-0.037 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHH
Q 017234 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIH 222 (375)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~ 222 (375)
..+..+...+.+.|++++|...|++..+. .+.+...+..+...+...|++++|.+.|++..+.... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444444444555555555555444431 1223334444444444444444444444444443211 02344444444
Q ss_pred HHHcc-CChHHHHHHHHHHHH
Q 017234 223 GSLKA-RDFDSVDRFYEEMMS 242 (375)
Q Consensus 223 ~~~~~-g~~~~a~~~~~~m~~ 242 (375)
++... |++++|.+.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.5e-05 Score=58.72 Aligned_cols=95 Identities=7% Similarity=-0.054 Sum_probs=47.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 295 (375)
.+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2234445555555555555555555555554432 223444555555555
Q ss_pred HcCChHHHHHHHHHHHh
Q 017234 296 ELGRVDELEEQLETLTK 312 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (375)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555444
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00029 Score=61.05 Aligned_cols=221 Identities=9% Similarity=-0.075 Sum_probs=160.0
Q ss_pred hccCChh-HHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC----------hHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 119 GKVQNVP-FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----------VVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 119 ~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
.+.|.++ +|+++++.+...+ +-+..+|+.--..+...|. +++++.+++.+... -+-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4566665 7999999999874 2245566654444433333 67899999998873 2556778887666
Q ss_pred HHHcCC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 017234 188 GFSSLG--NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-- 262 (375)
Q Consensus 188 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-- 262 (375)
.+.+.+ .+++++++++.+.+..+. |..+|+--.-.+...|. ++++++.++++.+.+ +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 677777 489999999999998765 88899888888888888 589999999999876 46777887777666655
Q ss_pred ------------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhCCCCCch
Q 017234 263 ------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-----------GRVDELEEQLETLTKCNQSPEV 319 (375)
Q Consensus 263 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~ 319 (375)
+.++++.+.+....... +-|...|+-+-..+.+. +.++++.+.++++.+.. |+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 45788889998888764 45777777555555544 45788999999998844 554
Q ss_pred HHHHHHHHHH-----HHHhhCCHHHHHHHHHHHHhC
Q 017234 320 LLHFFSGIIR-----LYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 320 ~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~ 350 (375)
. |..+-. +....|..+++...+.++++-
T Consensus 272 ~---w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 K---WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp H---HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3 432222 222467788999999999864
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.3e-05 Score=59.20 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 218 (375)
...+..+...+.+.|++++|.+.|++..+ ..|+ ...+..+...|...|++++|...+++..+.... +...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 33444444444444444444444444443 1233 233444444444444444444444444443221 334444
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.2e-05 Score=59.67 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
.+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.+++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444433221 3334444444444444444444444443
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.3e-05 Score=70.07 Aligned_cols=131 Identities=6% Similarity=-0.186 Sum_probs=54.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCC-CCcCH----hHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCC-hhc
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQG-IKPDS----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKT 181 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-~~~ 181 (375)
+..+...|.+.|++++|.+.+....+.- ..++. .+.+.+-..+...|+.+.|.++++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555555555555555443210 00111 11122222222334555555555544321 111111 223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC--CCC--c-CHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAA--GFS--V-NVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
+..+...|...|++++|..++++.... +.. + ...++..++..|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 444455555555555555555544322 110 0 12344445555555555555555554443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=7.2e-06 Score=60.40 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=7.1
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 017234 151 CACLCSGDVVTALSLFEIM 169 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m 169 (375)
..+...|++++|...|++.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a 30 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKA 30 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 3333333333333333333
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=1.9e-05 Score=58.93 Aligned_cols=59 Identities=12% Similarity=-0.013 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
.+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 45 YYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333334444444444444333322 122333334444444444444444444433
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=7.4e-06 Score=61.99 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=32.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (375)
.+.+.|++++|...|++.....+. +...|..+..++...|++++|...|++....+ +.+...+..+..++...|++++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 333344444444444443333221 33333333344444444444444444433332 1122333333333444444444
Q ss_pred HHHHHHHH
Q 017234 268 VKSFLKFL 275 (375)
Q Consensus 268 a~~~~~~~ 275 (375)
|...++..
T Consensus 105 A~~~~~~a 112 (142)
T 2xcb_A 105 AESGFYSA 112 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=9.3e-06 Score=62.17 Aligned_cols=134 Identities=7% Similarity=-0.069 Sum_probs=77.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-CHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NEN 285 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 285 (375)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555555555666666655555443210 011 134555666666666666666666665432 1111 134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 286 MAQKLVKCYCELGRVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
++..+...+...|++++|...+++..+.. ..+......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56666777777777777777777654321 11222223367778888888888888888877664
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.29 E-value=1.8e-05 Score=61.43 Aligned_cols=95 Identities=4% Similarity=-0.126 Sum_probs=43.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (375)
.+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|++++|...|++..+.. +.+...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443322 34444444444555555555555554444432 223444444444455
Q ss_pred hcCCHHHHHHHHHHHHh
Q 017234 261 ARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~ 277 (375)
..|++++|...|++.++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555554443
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.2e-05 Score=59.19 Aligned_cols=95 Identities=9% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW--KIN----ENMAQKL 290 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 290 (375)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 22333444444444444444444444444433210 011 3344444
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 017234 291 VKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..++...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555544444
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=2.6e-05 Score=60.49 Aligned_cols=100 Identities=8% Similarity=0.064 Sum_probs=86.8
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 292 (375)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56678888899999999999999999998865 3467888999999999999999999999998864 446788999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 017234 293 CYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=1.5e-05 Score=60.24 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=50.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 295 (375)
.+..+...+...|++++|...|++....+ +.+...|..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444455555555555555555555443 2344455555555555555555555555555432 233444555555555
Q ss_pred HcCChHHHHHHHHHHHh
Q 017234 296 ELGRVDELEEQLETLTK 312 (375)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (375)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2.7e-05 Score=58.10 Aligned_cols=96 Identities=9% Similarity=-0.080 Sum_probs=46.4
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
...+..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+.+ +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444445555555555555555554444322 34445555555555555555555555544432 2234444445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 017234 259 LCARRKLDRVKSFLKFLL 276 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~ 276 (375)
+...|++++|...+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555443
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=2.3e-05 Score=58.06 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--cC----HHhHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS--VN----VQTYE 218 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~ 218 (375)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... ++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45555666666666666666666665521 233455556666666666666666666665543211 00 12444
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
.+..++...|++++|.+.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555556666666666655544
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.8e-05 Score=57.34 Aligned_cols=112 Identities=13% Similarity=-0.026 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcC----HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhc
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 181 (375)
.+...+..+...+.+.|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 35777788888888888888888888888776 355 577888888888888999998888888762 1335667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
+..+..++...|++++|...|++..+.... +...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 778888888888999999888888776432 4444444433
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=5.3e-05 Score=55.76 Aligned_cols=93 Identities=11% Similarity=-0.034 Sum_probs=41.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh
Q 017234 257 EGLCARRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333 (375)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (375)
..+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...+++..+...........+..+..++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555544421 1111 2444444555555555555555555544332211111113444455555
Q ss_pred hCCHHHHHHHHHHHHhC
Q 017234 334 SDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 334 ~g~~~~A~~~~~~m~~~ 350 (375)
.|++++|...|+++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.6e-05 Score=60.89 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHCCCC-cC----HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC----hh
Q 017234 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIK-PD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SK 180 (375)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~ 180 (375)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666554432100 01 124555555555555555555555554431000000 22
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAAN 205 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m 205 (375)
++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444555555555544443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=2.8e-05 Score=57.01 Aligned_cols=24 Identities=8% Similarity=-0.140 Sum_probs=8.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
|..+..++...|++++|...|++.
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 54 WRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=3.8e-05 Score=70.45 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
..|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+.. |+.... +..+..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a-~~~l~~ 393 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAA-RLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH-HHHHHH
Confidence 344445555555555555555555554432 2234445555555555555555555555554422 222111 444455
Q ss_pred HHHhhCCHHHHH
Q 017234 330 LYALSDRLDDVE 341 (375)
Q Consensus 330 ~~~~~g~~~~A~ 341 (375)
++.+.|+.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=1e-05 Score=58.94 Aligned_cols=85 Identities=12% Similarity=-0.060 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 017234 262 RRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (375)
.|++++|...+++.++.+ -+.+...+..+..+|...|++++|...|++..+.. |+.... +..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQAL-RVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHH-HHHHHHHHHHcCCHHH
Confidence 344555555555554432 11223344455555555555555555555555432 221111 4445555555555555
Q ss_pred HHHHHHHHHh
Q 017234 340 VEYSVGRMGK 349 (375)
Q Consensus 340 A~~~~~~m~~ 349 (375)
|...|++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=2.9e-05 Score=56.91 Aligned_cols=94 Identities=6% Similarity=-0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 225 (375)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3344445555555555555555555411 223444555555555555555555555555554332 4445555555555
Q ss_pred ccCChHHHHHHHHHHHH
Q 017234 226 KARDFDSVDRFYEEMMS 242 (375)
Q Consensus 226 ~~g~~~~a~~~~~~m~~ 242 (375)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=9.2e-05 Score=54.40 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCCh----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHH
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN---VQTYESLIHG 223 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~ 223 (375)
..+.+.|++++|...|+...+. .|+. ..+..+..++.+.|++++|...|++..+..+. + ..++..+..+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444445555555555444431 1221 23334444444455555555555444443221 1 3334444444
Q ss_pred HHccCChHHHHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~ 242 (375)
+...|++++|...|++..+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4445555555555544444
No 180
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.08 E-value=0.0031 Score=58.22 Aligned_cols=291 Identities=10% Similarity=-0.000 Sum_probs=151.4
Q ss_pred cchHHHHHHhhcCCcchHHHHHHHhhhccCCCCcccHHHHHHH-HhcC-ChHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 017234 38 SSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSS-SPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (375)
Q Consensus 38 ~~~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~-~~~~-~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li 115 (375)
.+|...+..+......++..+|+.... ..|++..|...+.- .+.+ ..+....+|+.++..+ .....+...|...+
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF-ENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS-TTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc-CCCcccHHHHHHHH
Confidence 467777777766444477888888865 35799999999988 5555 3455666765444433 12345778888888
Q ss_pred HHHh----ccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHc-------------CCC--------------------
Q 017234 116 ALSG----KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------------SGD-------------------- 158 (375)
Q Consensus 116 ~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~-------------------- 158 (375)
..+. ..++++.+.++|++.......--...|......-.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7764 346788899999999974211111122211110000 001
Q ss_pred ----------------------hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh
Q 017234 159 ----------------------VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216 (375)
Q Consensus 159 ----------------------~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (375)
.+.+..+|+++.. ..+.+...|-..+.-+.+.|+.+.|.+++++.... +.+...
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~--~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD--SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 1223344444443 12333444555555555566666666666665555 122222
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLG---------IIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 284 (375)
+.. |....+.++. ++.+...- ..+ ....|...+....+.++.+.|..+|+.+ +.. ..+.
T Consensus 249 ~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 249 SLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp HHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 211 1111111111 11211100 001 0123444444455566788888888877 321 1233
Q ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 285 NMAQKLVKCYCE-LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 285 ~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
.+|......-.. .++.+.|..+|+...+.. |+.... +...++...+.|+.+.|..+|+++
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~-~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLL-KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444332222222 235888888888776643 222211 555666677778888888887775
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1.3e-05 Score=73.93 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=52.6
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (375)
+.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445555555555554444322 34455555555555555555555555555442 22344455555555555555555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKC--YCELGRVDELEEQLE 308 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 308 (375)
...+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555554432 1122223333333 445555555555554
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1.7e-05 Score=73.16 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 297 (375)
..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455678899999999999998864 3458899999999999999999999999999874 45678899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--HHhhCCHHHHHHHHH
Q 017234 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL--YALSDRLDDVEYSVG 345 (375)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 345 (375)
|++++|.+.+++..+....... . +..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~-~--~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKD-A--KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTT-H--HHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-H--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999885433222 2 4455555 888899999999998
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=5.6e-05 Score=69.33 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=64.1
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 293 (375)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++++.. +-+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4667777778888888888888888877764 3456777777888888888888888888887653 2345567777777
Q ss_pred HHHcCChHHHHH
Q 017234 294 YCELGRVDELEE 305 (375)
Q Consensus 294 ~~~~g~~~~a~~ 305 (375)
+.+.++.+++.+
T Consensus 395 ~~~~~~~~~a~~ 406 (457)
T 1kt0_A 395 QKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=6.5e-05 Score=66.80 Aligned_cols=88 Identities=10% Similarity=-0.018 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
..|..+..+|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. |+.... +..+..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~-~~~l~~ 349 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAI-QAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH-HHHHHH
Confidence 344455555555555555555555555432 2234455555555555555555555555555432 222111 444444
Q ss_pred HHHhhCCHHHHH
Q 017234 330 LYALSDRLDDVE 341 (375)
Q Consensus 330 ~~~~~g~~~~A~ 341 (375)
.+...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=6.4e-05 Score=69.18 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=97.7
Q ss_pred HHHccCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcC-HHHHH
Q 017234 223 GSLKARDFDSVDRFYEEMMSL-----G-IIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G-WKIN-ENMAQ 288 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 288 (375)
.+...|++++|+.++++..+. | -.|+ ..+++.|..+|...|++++|..++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887652 1 1122 467999999999999999999999987542 2 1233 35688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 289 KLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.|...|...|++++|+.++++..+ .|..-.......+.+-.++...|.+++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988643 34332223334678888888999999999999999874
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=8e-05 Score=66.21 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=87.0
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHH----------------CCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 017234 180 KTYDAFISGFSSLGNVDAMNKWYAANIA----------------AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (375)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----------------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 243 (375)
..+..+...+.+.|++++|.+.|++..+ .. +.+..+|..+..+|.+.|++++|...+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3466677777888888888888887765 21 124567777778888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
. +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..++...++.+++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3356777777788888888888888888877653 2356666666677766666665543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.8e-05 Score=57.60 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=45.1
Q ss_pred cCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHH
Q 017234 227 ARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 304 (375)
.|++++|...|++..+.+. +.+...+..+..++...|++++|...+++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555556666665555421 1123445555555666666666666666665543 234555555666666666666666
Q ss_pred HHHHHHHhC
Q 017234 305 EQLETLTKC 313 (375)
Q Consensus 305 ~~~~~~~~~ 313 (375)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=3.3e-05 Score=67.84 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=81.2
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017234 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (375)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (375)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4456677777788888888888888877643 33221 223334444332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHhhCCH
Q 017234 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL-YALSDRL 337 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 337 (375)
+.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. |+.... +..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a-~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAI-RRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHHHHHH
Confidence 889999999999999888754 3467888888999999999999999998887643 433321 4444444 3345667
Q ss_pred HHHHHHHHHHHhC
Q 017234 338 DDVEYSVGRMGKQ 350 (375)
Q Consensus 338 ~~A~~~~~~m~~~ 350 (375)
+.+..+|++|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7888888888754
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00015 Score=55.96 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 445555566666666666666666665543 33455566666666666666666666666655
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=9.7e-05 Score=57.00 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=47.1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
+...|..+..+|.+.|++++|...+++..+.+ +.+...|..+..++...|++++|...++..++.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34567777777777778888777777777654 345667777777777888888888877777664
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=8.5e-05 Score=68.34 Aligned_cols=126 Identities=6% Similarity=-0.058 Sum_probs=96.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHC-----CC-Cc-CHHhHHHHHHHHHccCChHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAA-----GF-SV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-----GI-IPS-IPILE 253 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~-----~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~ 253 (375)
.+...|++++|+.++++..+. |. .| ...+++.|..+|...|++++|..++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356889999999999887643 21 11 3578999999999999999999999887642 21 233 46799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 254 KVLEGLCARRKLDRVKSFLKFLLG-----GGW-KIN-ENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
.|...|...|++++|..++++.++ .|- .|+ ..+.+.+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754 231 232 334666778888999999999999998763
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=6.7e-05 Score=65.85 Aligned_cols=148 Identities=10% Similarity=-0.057 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 344666677777777777777777776654 233221 11222222222111 1 125566666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 017234 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG-LCARRKLD 266 (375)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~ 266 (375)
+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777666665432 56666666677777777777777776665442 1122333333333 22344556
Q ss_pred HHHHHHHHHHh
Q 017234 267 RVKSFLKFLLG 277 (375)
Q Consensus 267 ~a~~~~~~~~~ 277 (375)
.+...|..+..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 66666666654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.00038 Score=53.09 Aligned_cols=97 Identities=6% Similarity=-0.079 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC------cC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCC
Q 017234 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWK------IN-----ENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQS 316 (375)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~ 316 (375)
......+.+.|++++|...|++.++..-. .+ ...|..+..++.+.|++++|...+++..+. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455555555555555555442100 01 237788888888888888888888887763 125
Q ss_pred CchHHHHH----HHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 317 PEVLLHFF----SGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 317 ~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
|+.... | .....++...|++++|+..|++..+.
T Consensus 95 pd~~~A-~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKL-WISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHH-HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 654433 6 78888999999999999999988763
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.80 E-value=0.00022 Score=54.41 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC-------------hhcHHHHHHHHHcCCCHHHHHHHHHHHHHC---
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-------------SKTYDAFISGFSSLGNVDAMNKWYAANIAA--- 208 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--- 208 (375)
.+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3444455556666666666666666551 232 114455555555555555555555554443
Q ss_pred ----CCCcCHHhH----HHHHHHHHccCChHHHHHHHHHHH
Q 017234 209 ----GFSVNVQTY----ESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 209 ----~~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
.+. +...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 211 23344 444445555555555555554443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0027 Score=47.43 Aligned_cols=14 Identities=0% Similarity=-0.033 Sum_probs=5.2
Q ss_pred CHHHHHHHHHHHHh
Q 017234 336 RLDDVEYSVGRMGK 349 (375)
Q Consensus 336 ~~~~A~~~~~~m~~ 349 (375)
++++|...|++..+
T Consensus 112 d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 112 NEKQAVKTFEKACR 125 (138)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33333333333333
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.002 Score=60.56 Aligned_cols=171 Identities=9% Similarity=-0.069 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC----------hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC-
Q 017234 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----------VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG- 193 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~- 193 (375)
++|++.++.+.+.. +-+..+|+.--.++.+.|+ ++++++.++.+.+. -+-+..+|+.-.-.+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 45566666666553 2244455554444444444 66777777777652 2345556666555666666
Q ss_pred -CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 017234 194 -NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--------- 262 (375)
Q Consensus 194 -~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 262 (375)
+++++++.++++.+.... |..+|+.-.-.+.+.| .++++++.++++.+.+ +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 557777777777776554 6666766666666666 6777777777776654 34556666665555542
Q ss_pred -----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChH
Q 017234 263 -----RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (375)
Q Consensus 263 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 301 (375)
+.++++.+.+++..... +-|...|.-+-..+.+.+..+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888777654 446677777777776666633
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0019 Score=48.31 Aligned_cols=112 Identities=8% Similarity=-0.019 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 017234 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRV 268 (375)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 268 (375)
+++++|.++|++..+.|. |+.. |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 468899999999999873 3433 7777777788999999999999875 56778888888887 8999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 315 (375)
..++++..+.| ++..+..|...|.. .+++++|...|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999886 67888889999998 8999999999999988763
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.0045 Score=58.19 Aligned_cols=176 Identities=9% Similarity=-0.014 Sum_probs=133.0
Q ss_pred cCCC-hHHHHHHHHHHHhCCCCCCC-hhcHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 017234 155 CSGD-VVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGN----------VDAMNKWYAANIAAGFSVNVQTYESLIH 222 (375)
Q Consensus 155 ~~g~-~~~a~~~~~~m~~~~~~~~~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 222 (375)
+.|+ .++|++.++++... .|+ ..+|+.--.++...|+ ++++++.++.+.+..++ +..+|+.-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3444 57889999999872 344 4556655555555555 89999999999988765 8888988888
Q ss_pred HHHccC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc--
Q 017234 223 GSLKAR--DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-- 297 (375)
Q Consensus 223 ~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 297 (375)
.+.+.| +++++++.++++.+.+ +-+...|+.-...+.+.| .++++.+.++++.+.. .-|...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 888889 6799999999999876 457788888888888888 8999999999998875 45788888877776663
Q ss_pred ------------CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 017234 298 ------------GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339 (375)
Q Consensus 298 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (375)
+.++++.+.+++....+ |+.... |+.+-..+.+.++.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~sa-W~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSA-WFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHH-HHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC--CCCccH-HHHHHHHHhcCCCccc
Confidence 45688888888887744 433332 7777777777666433
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00047 Score=48.85 Aligned_cols=61 Identities=7% Similarity=-0.021 Sum_probs=26.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444332 12333444444444444444444444444443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00041 Score=49.84 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444332 2234444444445555555555555555544432 22344444555555555555555555554433
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00038 Score=49.39 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=28.3
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
.+..+...+...|++++|.+.|++..+..+. +...+..+..++...|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444444444444443322 344444444445555555555555544444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.52 E-value=0.00031 Score=50.55 Aligned_cols=74 Identities=15% Similarity=0.013 Sum_probs=44.2
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 97 ~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+++.....+.+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 8 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444556666666666666666666666666666543 22455666666666666666666666666554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.0015 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 286 MAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
.+..+..++...|++++|...+++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.0012 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=8.0
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 017234 149 LICACLCSGDVVTALSLFEIM 169 (375)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m 169 (375)
+...+.+.|++++|...|++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 333333333333333333333
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.00066 Score=47.51 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
+...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555666666666666666555543 22344555555566666666666665555543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.14 E-value=0.0016 Score=49.58 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhCCCCCchHH
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-----------GRVDELEEQLETLTKCNQSPEVLL 321 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~ 321 (375)
++|+..|++.++.. +-+..+|..+..+|... |++++|.+.|++..+ +.|+...
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHH
Confidence 35555555554432 22344455555555544 356666666666666 3344443
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0089 Score=54.00 Aligned_cols=110 Identities=10% Similarity=-0.062 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---CCcC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCchHHH
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLGGG---WKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLLH 322 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 322 (375)
.+..+.+.|++++|..++++.++.. +.|+ ..+++.+...|...|++++|+.++++..+ .|..-.....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667889999999998887531 2222 45688889999999999999999987653 2332223333
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh---CCCCccCchhHHHHH
Q 017234 323 FFSGIIRLYALSDRLDDVEYSVGRMGK---QGLSFKSAEDVEMES 364 (375)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~~~~ 364 (375)
.++.|...|...|++++|..++++..+ .-+.|+.|.......
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 488899999999999999999987765 344456665555433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0024 Score=44.53 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=7.8
Q ss_pred HHHHHHHHHccCChHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFY 237 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~ 237 (375)
|..+..+|...|++++|.+.|
T Consensus 44 ~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 44 YYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 333333333333333333333
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0036 Score=56.54 Aligned_cols=102 Identities=7% Similarity=-0.058 Sum_probs=74.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCcC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCchHHHHHHHHH
Q 017234 261 ARRKLDRVKSFLKFLLGG---GWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLLHFFSGII 328 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li 328 (375)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|..-......++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887542 12222 35788999999999999999999988653 3433323333499999
Q ss_pred HHHHhhCCHHHHHHHHHHHHh---CCCCccCchhHHH
Q 017234 329 RLYALSDRLDDVEYSVGRMGK---QGLSFKSAEDVEM 362 (375)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~~ 362 (375)
..|...|++++|..++++..+ .-+.|+.|.....
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999988765 3344556654443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.0011 Score=50.42 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=60.8
Q ss_pred hcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh----------HHHHHHHHHHHCCCCcCHhHHHHHHH
Q 017234 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP----------FAMHVFTSMEAQGIKPDSAVFNSLIC 151 (375)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~g~~p~~~~~~~li~ 151 (375)
+.+.+++|.+. ++......+.+...|..+..++.+.++++ +|+..|++..+.. +-+..+|..+..
T Consensus 14 r~~~feeA~~~----~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQD----AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHhHHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 44456667777 44555556667777777777777776643 6777777766653 224556777777
Q ss_pred HHHcCC-----------ChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 152 ACLCSG-----------DVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 152 ~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
+|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 776653 66777777776665 3566555544433
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.0056 Score=60.14 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=93.8
Q ss_pred HHHhccCChhHHHH-HHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCC
Q 017234 116 ALSGKVQNVPFAMH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (375)
Q Consensus 116 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (375)
......+++++|.+ ++..+ |+......++..+.+.|..++|.++.++-.. -.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCC
Confidence 34445677777765 44221 1122336777777777877777766532211 1223455688
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+++|+++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+....+-+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 88887775332 3667788888888888888888888877653 44555556667777766666655
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
....|. ++.-..+|.+.|++++|.+++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555441 2333444556677777776665543
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.035 Score=54.42 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=58.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 190 (375)
...++..+.+.|.++.|.++.+.- . .-.......|++++|.++.+.+ .+...|..+...+.
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al 692 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHH
Confidence 366666777777777776654211 1 1123345567777777765433 34566777777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
+.++++.|.+.|.++.+ |..+...+...|+.+...++-+..
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777766543 334444444455555544443333
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0052 Score=55.54 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSS-----EEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAAN 205 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 205 (375)
+++.+..+|...|++++|+.++++..+. ..-.|+ ..+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4444444444444444444444444320 001111 233444455555555555555544443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.024 Score=49.49 Aligned_cols=63 Identities=8% Similarity=-0.141 Sum_probs=30.1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (375)
+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555554443 4444444444444455555555555554444
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.062 Score=41.44 Aligned_cols=129 Identities=11% Similarity=0.009 Sum_probs=96.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (375)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445789999999997765 3788999999999999999999999988763 566777788889998
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (375)
....+-+.....|- ++.-...+.-.|+++++.++|.+. |.-| --.-.....|..+.|.++.++
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~--------eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP--------LAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH--------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH--------HHHHHHHHcCcHHHHHHHHHH
Confidence 88887777766652 445555677789999999998543 3222 112223456778888888877
Q ss_pred H
Q 017234 347 M 347 (375)
Q Consensus 347 m 347 (375)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 6
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.073 Score=46.44 Aligned_cols=74 Identities=15% Similarity=-0.001 Sum_probs=49.5
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 017234 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (375)
Q Consensus 176 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (375)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+...|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4555666666555555677777777777777764 56666666667777777777777777776665 45555554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.0078 Score=54.38 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcC-HH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLG---IIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G-WKIN-EN 285 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~ 285 (375)
.+..+...|++++|+.++++..+.. +.| ...+++.+..+|...|++++|..+++++++- | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999987641 122 2467899999999999999999999987542 2 2233 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 286 MAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
+++.|...|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68899999999999999999998864
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.22 Score=38.36 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=57.4
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChH
Q 017234 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231 (375)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 231 (375)
...+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 344566676666665443 4556677777777777777777666655433 344444555566665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
...++-+.....|- ++.....+.-.|+++++.+++.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 55554444444431 4444555556667766666664
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.38 E-value=0.063 Score=40.31 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChHHHH
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR---KLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 304 (375)
...+.+-|.+....| .++..+...+..++++++ +.+++..+++.+.+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555565555555 356666666666666666 4556667776666643 23 2344444555666777777777
Q ss_pred HHHHHHHh
Q 017234 305 EQLETLTK 312 (375)
Q Consensus 305 ~~~~~~~~ 312 (375)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777666
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.35 E-value=0.034 Score=38.08 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 017234 256 LEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLETLTKCN 314 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (375)
...+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|...|++..+.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445566777777777777776643 33455 66777777777777777777777776644
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.089 Score=39.51 Aligned_cols=80 Identities=10% Similarity=-0.044 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhhCCHHHHHH
Q 017234 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDDVEY 342 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 342 (375)
.+.+-|.+..+.| .++..+...+..++++++ +++++..+|+++.+.+ .| +..-. +-.+.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~-lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDY-VFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHH-HHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHH-HHHHHHHHHHccCHHHHHH
Confidence 3334444433333 244444444455555544 3334555555544432 12 11111 2223334455555555555
Q ss_pred HHHHHHh
Q 017234 343 SVGRMGK 349 (375)
Q Consensus 343 ~~~~m~~ 349 (375)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.03 E-value=0.047 Score=37.33 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHccCChHHHHHHHHHHHH
Q 017234 189 FSSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~ 242 (375)
+.+.|++++|.+.|++..+.... +.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444443221 333 444444444444444444444444443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.99 E-value=0.13 Score=35.01 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhC
Q 017234 282 INENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 282 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 350 (375)
.|+..+..+..++...++ .++|..++++..+.+ |+.... ...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA-~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAA-LSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 456666666665533 332222 344555556666666666666666554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.96 E-value=0.16 Score=34.63 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 106 SCLDEYACLIALSGKVQN---VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
.|+..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555543333 566777776666653 22455666666666677777777777777665
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.87 E-value=0.33 Score=35.41 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 017234 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (375)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (375)
+...+......|+.++..+++..+... -+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555554332 244555555555555555555555555555555443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.078 Score=37.02 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCC-----CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
..-+..|...+.+.|+++.|...|+...+.. .-.+....+..+..++.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3334444445555555555555554444310 0012223344444444444444444444444444
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.1 Score=36.33 Aligned_cols=65 Identities=8% Similarity=-0.079 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG------WKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
+..-+..+...+...|+++.|...++...+.- -.+...++..|..+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33445556666666666666666666654420 123455666666777777777777777776665
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.88 Score=41.14 Aligned_cols=53 Identities=6% Similarity=0.090 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHHHC-----CCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 017234 122 QNVPFAMHVFTSMEAQ-----GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174 (375)
Q Consensus 122 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 174 (375)
|+++.|.+.+-.+.+. +...+......++..|.+.|+++...+.+.-+....|
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ 87 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG 87 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 5677777766555532 2344556677777777777777777776666655333
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.43 E-value=0.51 Score=34.46 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=72.3
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHH
Q 017234 74 WDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (375)
Q Consensus 74 ~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (375)
...|+.+ ...|..++..++ +.+..... +..-||.+|.-....-+-+-..++++.+-+. -|..
T Consensus 8 ~kkLmeAK~~ildG~v~qGvei----i~k~~~ss--ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis------ 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKI----VLEITKSS--TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD------ 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH----HHHHHHHS--CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG------
T ss_pred HHHHHHHHHHHHhhhHHHHHHH----HHHHcCCC--CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH------
Confidence 3456666 477888888888 44443322 4555666666665555555555555554321 1111
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCCh
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 230 (375)
..|++.....-+-.+- .+...+...+......|+-+.-.+++..+... .+|++...-.+..+|.+.|+.
T Consensus 73 ----~C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~ 141 (172)
T 1wy6_A 73 ----KCQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDE 141 (172)
T ss_dssp ----GCSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCH
T ss_pred ----hhhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcch
Confidence 1223333333222221 22333444455555555555555555553332 234455555555555555555
Q ss_pred HHHHHHHHHHHHCCC
Q 017234 231 DSVDRFYEEMMSLGI 245 (375)
Q Consensus 231 ~~a~~~~~~m~~~~~ 245 (375)
.+|.+++.+.-+.|+
T Consensus 142 r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 142 RDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhh
Confidence 555555555555553
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.94 E-value=0.22 Score=41.79 Aligned_cols=110 Identities=7% Similarity=0.080 Sum_probs=80.3
Q ss_pred HhHHHHHHHH-HHc--CCC------hHHHHHHHHHHHhCCCCCCC---hhcHHHHHHHHHcC-----CCHHHHHHHHHHH
Q 017234 143 SAVFNSLICA-CLC--SGD------VVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSL-----GNVDAMNKWYAAN 205 (375)
Q Consensus 143 ~~~~~~li~~-~~~--~g~------~~~a~~~~~~m~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m 205 (375)
...|..++.+ ++. .|. ...|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 4456665553 333 233 4677777787776 3566 45788888888885 9999999999999
Q ss_pred HHCCCCcCHHhHHHHHHHHHcc-CChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 017234 206 IAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGII--PSIPILEKV 255 (375)
Q Consensus 206 ~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~--p~~~~~~~l 255 (375)
.+.+..-+..++......+++. |+.+++.+.+++....... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9876543578888888888885 9999999999999987666 664444433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.81 E-value=0.26 Score=41.30 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCC
Q 017234 250 PILEKVLEGLCAR-----RKLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCEL-GRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 250 ~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~ 316 (375)
..|..+...|... |+.++|.+.|++.++.+ | +..++....+.++.. |+.+++.+.+++.......
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4455555555552 56666666666555532 3 244455555555553 5556666666655554443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.65 E-value=0.36 Score=35.91 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=44.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCch
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 319 (375)
..++.++|.++|+.+++.+-+. ..+|......-.+.|+++.|.+++......+.+|..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 3378888888888886654344 777777778888899999999999988887777643
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.22 E-value=0.43 Score=34.42 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChHHHH
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR---VKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 304 (375)
...+.+-|.+....| .|+..+-..+..++.++.+... +..+++.+...+ .| .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444443333 2444444444445555444333 455555544432 12 1122233444455555555555
Q ss_pred HHHHHHHh
Q 017234 305 EQLETLTK 312 (375)
Q Consensus 305 ~~~~~~~~ 312 (375)
+.++.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.94 E-value=0.0016 Score=58.36 Aligned_cols=242 Identities=16% Similarity=0.175 Sum_probs=159.5
Q ss_pred cccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHH
Q 017234 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (375)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (375)
...|+.|-.+ +..+...+|++.| - +. .|+..|..+|....+.|.+++-...+...++. ..++..=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy----I---kA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY----I---KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS----C---CC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH----H---hC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 4458888888 7888888887774 1 11 35566888999999999999988887766655 3355666788
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------------------
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-------------------- 209 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------- 209 (375)
+-+|++.++..+-.+++ . .||..-...+..-|...|.++.|.-+|..+....
T Consensus 123 i~ayAk~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876543332 1 4677667777888888888877776665442111
Q ss_pred CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 017234 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289 (375)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (375)
-..++.||..+-.+|...+++.-|.-.--.+.-. || ....++..|-+.|.+++...+++..+... .....+|+-
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 1237788999999999999988877665555432 22 23356777888999999999988876432 357788998
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCchHH--------HHHHHHHHHHHhhCCHHHHH
Q 017234 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLL--------HFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~ 341 (375)
|.-.|++-. .++..+-++. .--..+... ..|.-++-.|.+-.++|.|.
T Consensus 269 LaILYsKY~-PeKlmEHlkl---f~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKFK-PQKMREHLEL---FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSSC-TTHHHHHHTT---SSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHH---HHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 888888753 4443333322 211111111 12555555566666666554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.63 E-value=0.74 Score=34.27 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 282 (375)
++.++|.++|+.+...+-.. ...|....+--.+.|++..|.+++...+..+-+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 67888888888886642222 5555555555568888888888888888876554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.90 E-value=1.9 Score=31.07 Aligned_cols=66 Identities=12% Similarity=-0.072 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 282 INENMAQKLVKCYCELGRVDE---LEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 282 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
++..+-..+..++.++.+..+ +..+++++...+ .| ...-. .-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~-lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDY-VFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444444333 444444444322 11 11111 12233344455555555555555543
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.89 E-value=8 Score=38.26 Aligned_cols=256 Identities=9% Similarity=0.001 Sum_probs=143.6
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCC-CCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHCCC-------CcCHhHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGN-ESC--LDEYACLIALSGKVQNVPFAMHVFTSMEAQGI-------KPDSAVFNSLI 150 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li 150 (375)
...|+.++++.. ++.-...+ ..+ ...-..+.-+....|...++..++.......- .+....-.++.
T Consensus 385 Ih~g~~~~gl~~----L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 385 IHKGNLLEGKKV----MAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HTSSCTTTHHHH----HTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hccCchHHHHHH----HHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 477888888888 44443321 122 33333444445566665677777766554311 01122233344
Q ss_pred HHHHcCCC-hHHHHHHHHHHHhCCCCCCChhcHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcc
Q 017234 151 CACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (375)
Q Consensus 151 ~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 227 (375)
-+++-.|. -+++.+.+..+..... +...... +|...+.-.|+.+....++..+.+.. .-+..-+-++.-++...
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 44444453 2456666666654111 1111122 33344567788888888888777642 11233333444455578
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHH
Q 017234 228 RDFDSVDRFYEEMMSLGIIPSIPILE---KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 304 (375)
|+.+.+..+.+.+.... .|. .-|. .+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999988742 222 2233 23346778899888888999988753 233333333444555578877778
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHh
Q 017234 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL-DDVEYSVGRMGK 349 (375)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 349 (375)
++++.+.+.+ .|.... -..+.-+....|.. .+|++++..+..
T Consensus 615 rlv~~L~~~~-d~~VR~--gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRC--GTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHH--HHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHH--HHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 8877666543 454444 33444444445543 678888888864
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.81 E-value=2.1 Score=41.27 Aligned_cols=128 Identities=9% Similarity=-0.039 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCCh-HHHHHHHHHHHHC------CCCC-CHH---
Q 017234 183 DAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-DSVDRFYEEMMSL------GIIP-SIP--- 250 (375)
Q Consensus 183 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~------~~~p-~~~--- 250 (375)
..++..+...++ .+.|.++|+++.+.....+......++..+...++- -+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555555 577888888887764332222223333333333321 1344444433211 1111 110
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 017234 251 -------ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (375)
Q Consensus 251 -------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (375)
....=..-|...|+++-|+.+-++....- +.+-.+|..|..+|...|+++.|.-.++-+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222334557788888888888887642 3456788888888888888888888887763
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.72 E-value=6.7 Score=36.98 Aligned_cols=289 Identities=8% Similarity=0.020 Sum_probs=158.6
Q ss_pred hHHHHHHhhcCCcchHHHHHHHhhhccCCCCcccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 017234 40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALS 118 (375)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~-~~~~~~li~~~ 118 (375)
|.....++.+.....+..+...+...-+.|- ..|..+........+.+.... +.+- .+.|- ...-+..+..+
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~~~~~~ev~~F----l~~~--~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLMNQPAVTVTNF----VRAN--PTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGGGCCHHHHHHH----HHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcccCCHHHHHHH----HHHC--CCChhHHHHHHHHHHHH
Confidence 3444444444333344555555544333333 255444433444456655555 3321 12232 23335566777
Q ss_pred hccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHH-
Q 017234 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA- 197 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~- 197 (375)
.+.+++....+.+.. .+.+...--....+....|+..+|....+.+.. .| ......+..++..+.+.|....
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~-~~~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TG-KSQPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CS-SCCCTHHHHHHHHHHHTTCSCHH
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CC-CCCcHHHHHHHHHHHHCCCCCHH
Confidence 788888877765443 133555545567778888998888888888886 33 3455678899999887665422
Q ss_pred -HHHHHHHHHHCC-----------CCcCH----------------------------Hh---HHHHHHHHHccCChHHHH
Q 017234 198 -MNKWYAANIAAG-----------FSVNV----------------------------QT---YESLIHGSLKARDFDSVD 234 (375)
Q Consensus 198 -a~~~~~~m~~~~-----------~~~~~----------------------------~~---~~~ll~~~~~~g~~~~a~ 234 (375)
...=+..+...| +.++. .. +...+.-+.+ .+.+.|.
T Consensus 156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~ 234 (618)
T 1qsa_A 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENAR 234 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHH
Confidence 111111111111 11111 00 0011112222 3677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 235 RFYEEMMSLGIIPSIPILEKVL----EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
..+....+.. ..+......+- ......+...++...+....... ++.......+....+.|+++.|...|+.|
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8887776543 23333322222 22333443455566666554432 44555556666667889999999999988
Q ss_pred HhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
......-+...+ | +.+++...|+.++|..+|.++..
T Consensus 312 ~~~~~~~~r~~Y-W--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 312 PMEAKEKDEWRY-W--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CTTGGGSHHHHH-H--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccccccHhHHH-H--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 764332222221 3 45577889999999999988864
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.25 E-value=0.66 Score=41.10 Aligned_cols=69 Identities=16% Similarity=0.057 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPI 251 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 251 (375)
...++..+...|+++++...+..+....+ .+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33455556666666666666666655443 2666666667777777777666666666543 366665443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.18 E-value=3.6 Score=42.10 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=30.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (375)
.++..+.+.+.++.+.++.... +.++..--.+..++...|++++|.+.|++.-
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3455555666666555544322 2234444455666777777777777776653
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.93 E-value=2.1 Score=29.32 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=45.5
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 261 ARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 261 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
+.. +.-++.+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.++.+--.. ... |..+++
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~i--Y~~~lq 87 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEI--YPYVIQ 87 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTH--HHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhh--HHHHHH
Confidence 344 556677777777777778888888888888888888888888888777643222 223 555553
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.92 Score=43.73 Aligned_cols=127 Identities=11% Similarity=0.037 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHH-H-HHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCc-CH-
Q 017234 217 YESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPI-L-EKVLEGLCARR-KLDRVKSFLKFLLGG------GWKI-NE- 284 (375)
Q Consensus 217 ~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~-~-~~li~~~~~~g-~~~~a~~~~~~~~~~------~~~~-~~- 284 (375)
-..++..+...|+ .+.|..+|+++.... |.... + ..++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555666666 578999999998864 43222 2 22333332222 122344444443321 1111 11
Q ss_pred ---------HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 285 ---------NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 285 ---------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
.....-.+.+...|+++.|.++-++... ..|+.... |..|..+|...|+++.|+-.++.+-
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~t-W~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFES-WYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHH-HHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHH-HHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1223334567789999999999999887 44654332 9999999999999999999998874
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=7.5 Score=34.99 Aligned_cols=56 Identities=14% Similarity=-0.016 Sum_probs=37.5
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 017234 81 LQSSSPKKAQLVLEWRLDKMLKGN--ESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136 (375)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 136 (375)
...|+++.|++.+-.+-.+....+ .........++..|.+.|+++...+.+..+.+
T Consensus 27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456788889888532222222222 24677788899999999999988777766553
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.08 E-value=1.1 Score=39.74 Aligned_cols=71 Identities=6% Similarity=-0.029 Sum_probs=50.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG-----GGWKINENMAQ 288 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 288 (375)
...++..+...|++++|...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456677777888888887777776654 45677788888888888888888888777632 47777766533
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.94 E-value=7.9 Score=34.12 Aligned_cols=167 Identities=7% Similarity=-0.067 Sum_probs=102.1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh---hcHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhH-
Q 017234 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTY- 217 (375)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~- 217 (375)
......+...|.+.|+.++..+++...+.-.+.-|-. .....++..+....+ .+.-.++..+..+..-. .-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567788889999999999999988876522222322 235577777776543 44444444444321100 11222
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHH
Q 017234 218 -----ESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-----IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINEN 285 (375)
Q Consensus 218 -----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 285 (375)
.-++..|...|++.+|.+++.++.+.=-..| ...|..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 3577888888999999888888876311112 234556667778888888888888877542 2224444
Q ss_pred HHHHH----HHHHH-HcCChHHHHHHHHHH
Q 017234 286 MAQKL----VKCYC-ELGRVDELEEQLETL 310 (375)
Q Consensus 286 ~~~~l----i~~~~-~~g~~~~a~~~~~~~ 310 (375)
+...+ ...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 33221 22344 678888887777554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.08 E-value=3.3 Score=28.36 Aligned_cols=59 Identities=15% Similarity=0.339 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHH
Q 017234 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (375)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 186 (375)
+..+-++.+...++.|++.+..+.+++|-+.+++.-|..+++-.+.+- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHH
Confidence 455555555555566666666666666666666666666666665422 22233455444
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.64 E-value=4.6 Score=29.33 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 017234 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 329 (375)
|.-+..+-++.+....+.|++.+..+-+++|.+.+|+..|.++|+-++.+-- +.... |..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~i--Y~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEI--YPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTH--HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-Cchhh--HHHHHH
Confidence 4556667777777777888888888888888888888888888888876532 22333 665553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.51 E-value=6.3 Score=40.35 Aligned_cols=147 Identities=9% Similarity=0.030 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC------------------
Q 017234 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI------------------ 245 (375)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------------------ 245 (375)
.++..+...+..+.+.++.... +.+....-.+..+|...|++++|.+.|.+.-. |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3444455555555555443322 23455555667788899999999999966421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 017234 246 -----IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (375)
Q Consensus 246 -----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (375)
..-..-|..++..+-+.+.++.+.++-...++..-.-+. ..|..+.+++...|++++|...+-.+......
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 011234778888888999999999888877654322222 25888999999999999999999888775543
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHH
Q 017234 317 PEVLLHFFSGIIRLYALSDRLDDV 340 (375)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A 340 (375)
.+ . ...|+..++..|..++-
T Consensus 971 ~~--c--Lr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KS--C--LLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HH--H--HHHHHHHHHHHCCHHHH
T ss_pred HH--H--HHHHHHHHHhCCChhhh
Confidence 32 2 66677777777665444
No 250
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.38 E-value=0.71 Score=38.30 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=42.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHH
Q 017234 261 ARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (375)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (375)
..+..+...++.+.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++.....-..-++.-++.|+.+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~ 267 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHH
Confidence 44554445566666666665544321 11233444566776655555441 23322211000112233345556653
Q ss_pred HHHHHHHHHHhCCCCccCch
Q 017234 339 DVEYSVGRMGKQGLSFKSAE 358 (375)
Q Consensus 339 ~A~~~~~~m~~~~~~~~~~~ 358 (375)
+.+-+.+.|..|+.++
T Consensus 268 ----i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 268 ----IAELLCKRGASTDCGD 283 (285)
T ss_dssp ----HHHHHHHHSSCSCCSS
T ss_pred ----HHHHHHHcCCCCCccc
Confidence 4445556677766654
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.77 E-value=4.6 Score=36.21 Aligned_cols=98 Identities=12% Similarity=-0.029 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCcCHHH--H
Q 017234 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLG--IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG---GGWKINENM--A 287 (375)
Q Consensus 215 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~--~ 287 (375)
.+...+...|.+.|++++|.+.|.++...- ..--...+-.++..+...+++..+...+.++.. .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367778888888999999999998887642 222346677778888888888888888887643 222222211 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 288 QKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
..-...+...+++..|-+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223456777777777766544
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.52 E-value=6.5 Score=30.83 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 262 RRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
.+.......+|..|...|+... ...|......+...|++++|..+|+.-++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677778887777665433 4456777777777888888888888877777777
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.80 E-value=3.6 Score=33.94 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHcC
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELG 298 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 298 (375)
+....+.|++++|+.....-.+.. +.|...-..+++.+|-.|++++|..-++...+.. ..|-..+|..+|++-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH----
Confidence 345678899999998888887775 6678888899999999999999999988887642 223333455555431
Q ss_pred ChHHHHHHHHHHHhCCC------CCchHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhC
Q 017234 299 RVDELEEQLETLTKCNQ------SPEVLLHFFSGIIRLYA--LSDRLDDVEYSVGRMGKQ 350 (375)
Q Consensus 299 ~~~~a~~~~~~~~~~~~------~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 350 (375)
..=.++-.-+. .|... ...++.+.. ..|+.++|.++-.++.+.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w---~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEEL---TKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHH---HHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 21122222111 23333 455565554 459999999999888764
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.60 E-value=6.6 Score=28.52 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHH
Q 017234 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (375)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~ 187 (375)
+..+-++.+...++.|++.+..+.+++|-+.+++..|..+|+-.+.+ ..+....|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 35556666666777777777777777777777777777777777763 2344455666554
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.55 E-value=2.9 Score=37.50 Aligned_cols=137 Identities=7% Similarity=-0.109 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHcCChHHHHH
Q 017234 230 FDSVDRFYEEMMSLG-IIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW--KINENMAQKLVKCYCELGRVDELEE 305 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 305 (375)
.++..+......+.. ... -..+...+...|.+.|+++.|.+.+.++.+.-. .--...+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444432 122 223577888999999999999999999977532 2334678889999999999999999
Q ss_pred HHHHHHh---CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCccCchhHHHHHHH
Q 017234 306 QLETLTK---CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMESWF 366 (375)
Q Consensus 306 ~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 366 (375)
.+.+... .+..|.........-...+...+++.+|...|-+....--..+.+.......+.
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~ 253 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYA 253 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHH
Confidence 9988754 344444443333333444466799999999999987654433333333333333
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.14 E-value=0.054 Score=48.79 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=140.0
Q ss_pred CCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHH
Q 017234 68 NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146 (375)
Q Consensus 68 ~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 146 (375)
.-|...|..+|.+ -+.|.+++-+..+ +|.+....++.+=+.|+-+|++.++..+-++++. .|+..-.
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL-----~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~i 147 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYL-----QMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHI 147 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHH-----HTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccH
Confidence 3466778888888 5788888877763 5555555556666789999999998776554432 3666667
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC-------------------CCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 017234 147 NSLICACLCSGDVVTALSLFEIMVSS-------------------EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (375)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 207 (375)
..+.+-|...|.++.|.-+|..+..- ..-..++.||..+..+|...+.+.-|--.--.+.-
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 77777788888887777776655431 11135678999999999999988776554444332
Q ss_pred CCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-----
Q 017234 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWK----- 281 (375)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~----- 281 (375)
. || -...++..|-..|.+++.+.+++.-.... +...-.|+.|.-.|++-. .++..+.++....+ +++
T Consensus 228 h---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvira 300 (624)
T 3lvg_A 228 H---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRA 300 (624)
T ss_dssp C---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHH
T ss_pred c---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHH
Confidence 2 11 23445677888888888888887776433 466777888877777653 45444444332221 111
Q ss_pred -cCHHHHHHHHHHHHHcCChHHHH
Q 017234 282 -INENMAQKLVKCYCELGRVDELE 304 (375)
Q Consensus 282 -~~~~~~~~li~~~~~~g~~~~a~ 304 (375)
-....|.-++-.|..-.++|.|.
T Consensus 301 cE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 301 AEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhHHHHHHHHhcchhHHHHH
Confidence 12334566666666666666544
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.88 E-value=8.1 Score=27.99 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 017234 103 GNESCLDEYACLIALSGKVQN---VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 103 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (375)
++.|+..+--....++.++.+ ...++.+++.+.+.+..-....+--+.-++.+.|++++|.+..+.+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344666665555555655554 345677777766654211244455556667777777777777777776
No 258
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=85.60 E-value=3.1 Score=33.32 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=12.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCccC
Q 017234 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
++..+..|+.+ +++.+.+.|..++.
T Consensus 187 L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 187 LHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred HHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 33445666654 33444456665543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.73 E-value=5.1 Score=30.32 Aligned_cols=60 Identities=7% Similarity=-0.018 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-------hcHHHHHHHHHcCCCHHHHHHHHHHH
Q 017234 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-------KTYDAFISGFSSLGNVDAMNKWYAAN 205 (375)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m 205 (375)
+-.-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...+++..|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344555556666666665555544321122331 23445556666666666666666654
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.58 E-value=8.4 Score=26.25 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||...|..| +-.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 34555555555554432 22222222334455556665555443322 4555554444 2235555555555555
Q ss_pred HHHhCC
Q 017234 274 FLLGGG 279 (375)
Q Consensus 274 ~~~~~~ 279 (375)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.14 E-value=8.9 Score=26.19 Aligned_cols=78 Identities=10% Similarity=-0.074 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||...|..| +-.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 34555555555544432 22222222334455555555555443332 4555554444 2235555555555555
Q ss_pred HHHhCC
Q 017234 274 FLLGGG 279 (375)
Q Consensus 274 ~~~~~~ 279 (375)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554444
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.36 E-value=10 Score=31.27 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=78.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCC
Q 017234 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~ 264 (375)
....+.|.++++++....-++..+. |...-..++..+|-.|+|+.|.+-++...+... .|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 4567889999999999998888765 888999999999999999999998888877531 1222334444433
Q ss_pred HHHHHHHHHHHHhCCCC-----cCHHHHHHHHHHHH--HcCChHHHHHHHHHHHh
Q 017234 265 LDRVKSFLKFLLGGGWK-----INENMAQKLVKCYC--ELGRVDELEEQLETLTK 312 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 312 (375)
+..=.+....+-. ....-...++.+.. ..|+.++|..+-....+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2222333333322 22334555666654 46999999998887755
No 263
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.46 E-value=5 Score=29.93 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCc
Q 017234 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (375)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 354 (375)
+++..+|..|...++....... |......+...|++++|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~Alf-Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPL-YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3466777777777665544443 6777777777777777777777777766644
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.91 E-value=14 Score=26.82 Aligned_cols=67 Identities=6% Similarity=-0.191 Sum_probs=29.8
Q ss_pred CcCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 281 KINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 281 ~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.|+..+--.+..++.++.+.+ ++..+++++.+.+ |.......-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444455555544432 3444555544433 211111123344445555555555555555553
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=79.86 E-value=9.9 Score=33.77 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=11.6
Q ss_pred HHhhCCHHHHHHHHHHHHhCCCCccC
Q 017234 331 YALSDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
-+..|+.+ +.+.+.+.|..|+.
T Consensus 351 A~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 351 AAQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHTTCHH----HHHHHHHTTCCSCC
T ss_pred HHHCChHH----HHHHHHHCcCCCCC
Confidence 34556553 34444556666654
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.61 E-value=6.3 Score=29.83 Aligned_cols=50 Identities=8% Similarity=0.118 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 268 VKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
...+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444555544443322 2234444444455555555555555555544444
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.47 E-value=7.2 Score=29.53 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 017234 285 NMAQKLVKCYCELGRVDELEEQLETLTKC 313 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (375)
..---+..+|.+.|++++|..+++.+..+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34344666777777777777776655443
No 268
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=76.58 E-value=12 Score=28.69 Aligned_cols=13 Identities=15% Similarity=0.136 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCCC
Q 017234 234 DRFYEEMMSLGII 246 (375)
Q Consensus 234 ~~~~~~m~~~~~~ 246 (375)
.++.+.+.+.|..
T Consensus 158 ~~~v~~Ll~~ga~ 170 (201)
T 3hra_A 158 QDIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3344444444433
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.32 E-value=4.4 Score=32.25 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=10.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHH
Q 017234 328 IRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~ 348 (375)
+....+.|+.+-+..+++...
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHhhh
Confidence 334456666655554444433
No 270
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=75.13 E-value=6.8 Score=30.23 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=7.8
Q ss_pred HHHHHHhcCChHHHHHH
Q 017234 76 ALITSLQSSSPKKAQLV 92 (375)
Q Consensus 76 ~li~~~~~~~~~~a~~~ 92 (375)
.+..++..|+.+....+
T Consensus 8 ~L~~A~~~g~~~~v~~l 24 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEI 24 (201)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHH
Confidence 34444455554444444
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.90 E-value=21 Score=30.87 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHhCCCC
Q 017234 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR--LDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 353 (375)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f---hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc---hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45556666666666666666666643111 111113444444443322 34455555555555543
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.88 E-value=12 Score=30.45 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=95.3
Q ss_pred HHHHHhhcCCcchHHHHHHHhhhccCCCCc----ccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 017234 42 PLISRLLQVPVSQIKTTLDSVDIFAFNSSQ----FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117 (375)
Q Consensus 42 ~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~ 117 (375)
..+...++.+..+. +..+.+.|..++. .-++.|..++..|+.+-...+ ++.-..-..+|....+ .+..
T Consensus 7 ~~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDL---VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGAT-PFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHH---HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHH
T ss_pred hHHHHHHHcCCHHH---HHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCC-HHHH
Confidence 34555556666543 3333334444432 234556566777776554444 3321111122332222 3334
Q ss_pred HhccCChhHHHHHHHHHHHCCCCcCH---hHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh-------------c
Q 017234 118 SGKVQNVPFAMHVFTSMEAQGIKPDS---AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-------------T 181 (375)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------~ 181 (375)
.+..|+.+-+ +.+.+.|..++. .-++ .+...+..|+.+-+..+++ .|..++.. -
T Consensus 79 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 79 AAIAGSVKLL----KLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYK-----RGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHTCHHHH----HHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHcCCHHHH----HHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHH-----hCCCcccccccHHHHHhhccCC
Confidence 4455665444 344445544432 2222 3334456676654444333 33333321 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcC---HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAA-GFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI--LEKV 255 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l 255 (375)
.+.+. ..+..|+.+-+. .+.+. |..++ ....+.+.. .+..|+.....++++.+.+.|..++... -.+.
T Consensus 149 ~t~L~-~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 149 ATALM-DAAEKGHVEVLK----ILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp CCHHH-HHHHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CcHHH-HHHHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 23333 334456654443 33433 44332 222333333 3445665556677777777776554311 1233
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 017234 256 LEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 256 i~~~~~~g~~~~a~~~~~ 273 (375)
+...++.|+.+-+..+++
T Consensus 223 L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 444556777776655554
No 273
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=73.17 E-value=32 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=11.2
Q ss_pred cHHHHHHHHhcCChHHHHHH
Q 017234 73 SWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~ 92 (375)
-++.|..++..|+.+-+..+
T Consensus 37 g~t~L~~A~~~g~~~~v~~L 56 (232)
T 2rfa_A 37 GETALHIAALYDNLEAAMVL 56 (232)
T ss_dssp SCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHH
Confidence 34455555666766555444
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.65 E-value=20 Score=24.46 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=13.1
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 209 (375)
||...|-.|.. .+.|..+++...+.++...|
T Consensus 68 pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 68 PALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp GGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44444444322 24444444444444444433
No 275
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=72.53 E-value=30 Score=29.27 Aligned_cols=275 Identities=17% Similarity=0.102 Sum_probs=120.4
Q ss_pred HHHHHHhhcCCcchHHHHHHHhhhccCCCCcc----cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF----SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 41 ~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
+.+|...++.++.++.+.| .+.|..|+.. -++.|..++..|+.+-+.-+ ++.-......+...... +.
T Consensus 26 ~t~L~~Av~~g~~~~V~~L---L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~L----l~~ga~~~~~~~~~~~~-~~ 97 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQL---LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATP-FI 97 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHH---HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCH-HH
T ss_pred ChHHHHHHHcCCHHHHHHH---HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHH----HHcCCchhhhccCCCch-hH
Confidence 4456666677776554444 3456666543 24567767888887654444 43221111122222222 22
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCc---CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh-------------h
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIKP---DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-------------K 180 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~ 180 (375)
.....+.......+ ...+..+ |..-++. +...+..|..+-+..+++. |..++. .
T Consensus 98 ~~~~~~~~~~~~~~----~~~~~~~~~~d~~g~t~-l~~A~~~~~~~~~~~ll~~-----ga~~~~~~~~~~~~~~~~~~ 167 (337)
T 4g8k_A 98 LAAIAGSVKLLKLF----LSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKG 167 (337)
T ss_dssp HHHHHTCHHHHHHH----HTTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHT-----TCCTTCCCCCC-----CTTC
T ss_pred HHHhcccchhhHHh----hhccchhhhhccCCCCH-HHHHHHcCcHHHHHHHHHc-----CCCcchhhccccccccccCC
Confidence 22233333332222 2232222 1111222 2333456666554444432 222211 1
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---HHHHH
Q 017234 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI---PILEK 254 (375)
Q Consensus 181 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ 254 (375)
-.+.|. ..+..|+.+-+..+++ +.|..++ ....+.+..+... +.......+.+.+.+.|..++. .-.+.
T Consensus 168 g~T~L~-~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~ 242 (337)
T 4g8k_A 168 GATALM-DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTP 242 (337)
T ss_dssp SCCHHH-HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCcHHH-HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 122333 3345577654443332 2344433 2222333332222 2222233344555666655542 22223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (375)
+...+..|..+.+..++.. .|..++ ..-.+.|.. .++.|+.+-+ +.+.+.|..++..+ .+..-
T Consensus 243 -L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~iv----~~Ll~~GAd~n~~~-----~L~~A 308 (337)
T 4g8k_A 243 -LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKKIA----ELLCKRGASTDCGD-----LVMTA 308 (337)
T ss_dssp -HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHHHH----HHHHTTSCSSTTCC-----HHHHH
T ss_pred -HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHHHH----HHHHHCCCCCCCCC-----HHHHH
Confidence 3345567777766555432 232222 111223333 3456775543 44456777776543 23334
Q ss_pred HhhCCHHHHHHHHHHHHhCCCCccC
Q 017234 332 ALSDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
++.|+.+-+ +-+++.|-.||.
T Consensus 309 ~~~~~~~iv----~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 309 RRNYDHSLV----KVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHHHH----HHHHHTTCCC--
T ss_pred HHcCCHHHH----HHHHHCcCCCCC
Confidence 566777633 445577776653
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.43 E-value=24 Score=28.13 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
++..+|..|...++....... |......+...|++.+|..+|+.-++.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~Alf-Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIF-YEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 444555555555444433322 455555555555555555555555544443
No 277
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.20 E-value=86 Score=31.18 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=82.5
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCChhcHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHc
Q 017234 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE--SLIHGSLK 226 (375)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~ 226 (375)
..++-.|+.+-...++..+.+. .+..+.. .+.-++...|+.+.+..+.+.+.... .|...--. ++.-+|+-
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~----~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQET----QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred hhhcccCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence 3344667777777777776651 2223333 33334446777777777777776631 22222222 23345666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh-HHHHH
Q 017234 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-DELEE 305 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~ 305 (375)
.|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 677777777777777642 1222222222234445666666677776665544 34444444444444444443 45666
Q ss_pred HHHHHH
Q 017234 306 QLETLT 311 (375)
Q Consensus 306 ~~~~~~ 311 (375)
++..+.
T Consensus 651 ~L~~L~ 656 (963)
T 4ady_A 651 VLDPLT 656 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666664
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.75 E-value=44 Score=28.35 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Q 017234 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (375)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 351 (375)
+..++--.+-..++.|.....+...-+....+.+++..|-.+-+++++.+
T Consensus 188 R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 188 RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444444444444454444444444555555555555555555555443
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.73 E-value=35 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 017234 283 NENMAQKLVKCYCELGR 299 (375)
Q Consensus 283 ~~~~~~~li~~~~~~g~ 299 (375)
+..+-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.02 E-value=30 Score=25.40 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 017234 246 IPSIPILEKVLEGLCARRK---LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (375)
.|+..+--.+..++.++.+ ..++..+++.+...+-.-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444445555554443 234555555555432111222333344555666666666666666655
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.24 E-value=39 Score=26.44 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 017234 227 ARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 283 (375)
.+...++.++|..|..+|+--. ...|-.....+...|++.+|..+|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457789999999988876544 56677777888889999999999999988887773
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.16 E-value=8.2 Score=30.61 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=6.3
Q ss_pred HHcCChHHHHHHHH
Q 017234 295 CELGRVDELEEQLE 308 (375)
Q Consensus 295 ~~~g~~~~a~~~~~ 308 (375)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455444444443
No 283
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=68.10 E-value=7.4 Score=30.84 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=8.7
Q ss_pred HHHHhccCChhHHHHHHHH
Q 017234 115 IALSGKVQNVPFAMHVFTS 133 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~ 133 (375)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334444555554444443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.08 E-value=32 Score=25.56 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 268 VKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 268 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
...+|..|...|+-.. ...|......+...|++++|.++|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555543322 2334445555555555555555555555555555
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.02 E-value=17 Score=28.79 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=8.9
Q ss_pred HHHHHHHhcCChHHHHHH
Q 017234 75 DALITSLQSSSPKKAQLV 92 (375)
Q Consensus 75 ~~li~~~~~~~~~~a~~~ 92 (375)
+.|..++..|+.+....+
T Consensus 11 t~L~~A~~~g~~~~v~~L 28 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRL 28 (241)
T ss_dssp CHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHH
Confidence 334444555655544444
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.51 E-value=27 Score=23.89 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=7.4
Q ss_pred cCCCHHHHHHHHHHHHHC
Q 017234 191 SLGNVDAMNKWYAANIAA 208 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~ 208 (375)
+.|..+++...+.++...
T Consensus 81 rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 81 RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHTCHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 334444444444444333
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.67 E-value=34 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=13.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555555566666666655554
No 288
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=64.96 E-value=14 Score=29.27 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=9.3
Q ss_pred HHcCChHHHHHHHHHHHh
Q 017234 295 CELGRVDELEEQLETLTK 312 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~ 312 (375)
...|+.+.+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444555555555555543
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=64.72 E-value=48 Score=27.91 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHH
Q 017234 76 ALITSLQSSSPKKAQLV 92 (375)
Q Consensus 76 ~li~~~~~~~~~~a~~~ 92 (375)
.|..++..|+.+-+..+
T Consensus 171 ~L~~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 171 ALMDAAEKGHVEVLKIL 187 (337)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 45555666665543333
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.53 E-value=28 Score=30.70 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=11.0
Q ss_pred HHHhhCCHHHHHHHHHHHHhCCCCccC
Q 017234 330 LYALSDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
..+..|+.+ +.+.+.+.|..++.
T Consensus 317 ~A~~~g~~~----~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 317 VASHYGNIK----LVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHSSCSH----HHHHHHHTTCCTTC
T ss_pred HHHHcCcHH----HHHHHHhcCCCCCC
Confidence 334556654 33344455555543
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.88 E-value=34 Score=28.86 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=15.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHH
Q 017234 111 YACLIALSGKVQNVPFAMHVFTSM 134 (375)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m 134 (375)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345566666666666666666654
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.09 E-value=51 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.046 Sum_probs=7.4
Q ss_pred CHhHHHHHHHHHHcCCC
Q 017234 142 DSAVFNSLICACLCSGD 158 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~ 158 (375)
+..+-...+.++.+.|.
T Consensus 58 ~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGD 74 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44444444444444444
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.14 E-value=61 Score=26.06 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 017234 283 NENMAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
+.......+..+.+.|+-++|..+|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455555566666666655544
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.75 E-value=6 Score=32.18 Aligned_cols=19 Identities=0% Similarity=-0.192 Sum_probs=8.1
Q ss_pred ccCChhHHHHHHHHHHHCC
Q 017234 120 KVQNVPFAMHVFTSMEAQG 138 (375)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g 138 (375)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444333
No 295
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=60.10 E-value=59 Score=25.85 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=30.8
Q ss_pred HHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017234 224 SLKAR-DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281 (375)
Q Consensus 224 ~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 281 (375)
+.+.| ..+.+..+++.+.+.|.-.|..--...+....+.+.+ ....+-.++.+.|+.
T Consensus 85 L~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 85 LKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 33444 3455667777777777655544444445554442222 244455666677764
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.00 E-value=66 Score=25.87 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=45.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCC-CCCC----ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 017234 150 ICACLCSGDVVTALSLFEIMVSSE-EYKP----NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (375)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~~-~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 224 (375)
++.+....++++|.+++++..+.. ++++ +.......+..-.....-.-+..+.+++.. .++...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 555666667777766666554410 1111 111122223332332233334444445532 34566666677778
Q ss_pred HccCChHHHHHHHHHH
Q 017234 225 LKARDFDSVDRFYEEM 240 (375)
Q Consensus 225 ~~~g~~~~a~~~~~~m 240 (375)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 8888888888877444
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.35 E-value=26 Score=28.93 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=33.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
+.+...+..|+.+-+.-+++.-..-.. .|....+..+...+..|+.+ +.+.+.+.|..++..... -+..|
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~~-----a~~~~ 232 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANLE-----NVLLD 232 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTGG-----GGTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCChh-----hhhcC
Confidence 334444556666655555544322111 11111111122233445433 334445556555544321 13355
Q ss_pred ChHHHHHHHHH
Q 017234 299 RVDELEEQLET 309 (375)
Q Consensus 299 ~~~~a~~~~~~ 309 (375)
+.+-+.-+++.
T Consensus 233 ~~~iv~~Ll~~ 243 (285)
T 3kea_A 233 DAEIAKMIIEK 243 (285)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 65555555544
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.34 E-value=92 Score=27.33 Aligned_cols=56 Identities=5% Similarity=-0.110 Sum_probs=23.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC--CCC---cCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 017234 185 FISGFSSLGNVDAMNKWYAANIAA--GFS---VNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 240 (375)
++..|...|++.+|.+++.++.+. ..+ .-...|-.-+..|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444445555555554444444331 100 01222333344444455555555444443
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.04 E-value=55 Score=24.63 Aligned_cols=50 Identities=6% Similarity=-0.025 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCC
Q 017234 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (375)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 353 (375)
+..+|..|...++....... |......+...|++.+|.++|+.-++.+-.
T Consensus 79 p~~if~~L~~~~IG~~~Alf-Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQF-YISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 33444444444443333222 444444444444444444444444444443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.87 E-value=31 Score=25.61 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=12.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 017234 218 ESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 218 ~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344455555555555555555543
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.83 E-value=54 Score=25.53 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=6.6
Q ss_pred cHHHHHHHHhcCChH
Q 017234 73 SWDALITSLQSSSPK 87 (375)
Q Consensus 73 ~~~~li~~~~~~~~~ 87 (375)
-++.|..++..|+.+
T Consensus 40 g~t~L~~A~~~g~~~ 54 (231)
T 3aji_A 40 SRTALHWACSAGHTE 54 (231)
T ss_dssp SCCHHHHHHHHTCHH
T ss_pred CCCHHHHHHHcCcHH
Confidence 333444445555443
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=57.86 E-value=49 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=17.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
+..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333334444444444444433333334333334444333
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.26 E-value=61 Score=24.63 Aligned_cols=19 Identities=5% Similarity=0.177 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHCCCCcC
Q 017234 195 VDAMNKWYAANIAAGFSVN 213 (375)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~ 213 (375)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3334445555555555443
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.78 E-value=57 Score=24.14 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC--hHHHHHHHHHHHHCCC
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMMSLGI 245 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~ 245 (375)
.+.++.-|...|+.++|.+.++++..-.. ....+..++..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666666666666666542111 123334444444444322 3345555555555443
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.81 E-value=44 Score=24.42 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344444444444333333344333444444444
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.64 E-value=54 Score=23.92 Aligned_cols=59 Identities=10% Similarity=0.024 Sum_probs=30.7
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC
Q 017234 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (375)
Q Consensus 100 m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (375)
+...|...+..-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33444433334444555555555555566666666555544555555555555555553
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=54.61 E-value=24 Score=30.21 Aligned_cols=46 Identities=13% Similarity=-0.041 Sum_probs=23.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHH---HHHHHHHHHHHcCChHHHHHHHHH
Q 017234 259 LCARRKLDRVKSFLKFLLGGGWKINEN---MAQKLVKCYCELGRVDELEEQLET 309 (375)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~ 309 (375)
.+..|+.+-+.. +++.|..++.. -.+ -+...+..|+.+-+..+++.
T Consensus 218 A~~~g~~~~v~~----Ll~~gad~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDVAMR----FVEMGIDVNMEDNEHTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHHHHH----HHTTTCCTTCCCTTSCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHH----HHHcCCCCCCCCCCCCC-HHHHHHHhChHHHHHHHHHc
Confidence 345666654443 44455444321 122 23334566777777666665
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=54.57 E-value=29 Score=26.58 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhCCCCcC
Q 017234 266 DRVKSFLKFLLGGGWKIN 283 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~ 283 (375)
....++.+.+++.|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHCCCCCC
Confidence 334455555555554443
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.41 E-value=54 Score=24.10 Aligned_cols=61 Identities=3% Similarity=-0.070 Sum_probs=36.5
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 99 ~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
.+...|...+..-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445555555555566666666666667777777776665555666666666666666643
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.02 E-value=45 Score=24.00 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444333333333333344444444
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.17 E-value=93 Score=25.45 Aligned_cols=213 Identities=10% Similarity=-0.023 Sum_probs=104.8
Q ss_pred ccccchHHHHHHhhcCCcchHHHHHHHhhhccCCCCccc-HHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 017234 35 TSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFS-WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113 (375)
Q Consensus 35 ~~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~ 113 (375)
++..-.+.|..+ +..+..++.+. +.+.|..++... ++.|..++..|+.+-+..+ ++.-..-..+|...++.
T Consensus 27 ~d~~g~t~L~~A-~~~g~~~~v~~---Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 27 ADVHGHSASYYA-IADNNVRLVCT---LLNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTA 98 (285)
T ss_dssp CCTTSCCHHHHH-HHTTCHHHHHH---HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCH
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHH---HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcH
Confidence 344444454444 44555544333 333455554432 4455555788877655555 43211111233333333
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHh---HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-ChhcHHHHHHHH
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA---VFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGF 189 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~ll~~~ 189 (375)
+...+..|+.+-+..+++. |..++.. -+...+...+..|+.+-+..++ + .|..+ +...-.+.+...
T Consensus 99 -L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~-~g~~~~~~~~g~t~L~~A 168 (285)
T 3kea_A 99 -LYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----S-EIPSTFDLAILLSCIHIT 168 (285)
T ss_dssp -HHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----T-TSCTTCCCSTHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----h-CCCccccccCCccHHHHH
Confidence 4444567777655555544 4444332 2234555566778775444443 3 23222 221233444555
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (375)
+..|..+-+.-+++.-...... |..-.+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.
T Consensus 169 ~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~ 238 (285)
T 3kea_A 169 IKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAK 238 (285)
T ss_dssp HHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHH
Confidence 6778877666666553332221 222222223444455664 355556677877765442 224577777666
Q ss_pred HHHHHH
Q 017234 270 SFLKFL 275 (375)
Q Consensus 270 ~~~~~~ 275 (375)
.+++.-
T Consensus 239 ~Ll~~g 244 (285)
T 3kea_A 239 MIIEKH 244 (285)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 666543
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.76 E-value=87 Score=24.74 Aligned_cols=22 Identities=0% Similarity=0.036 Sum_probs=11.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHh
Q 017234 328 IRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~ 349 (375)
+-.|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555555555555555544
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.61 E-value=62 Score=25.77 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 017234 267 RVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (375)
Q Consensus 267 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 317 (375)
....+|..|...|+-.. ...|......+...|++.+|..+|+.-++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45556666655554433 3345555566666666666666666666655555
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.58 E-value=63 Score=23.07 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC--hHHHHHHHHHHHHCCC
Q 017234 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMMSLGI 245 (375)
Q Consensus 183 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~ 245 (375)
+.++.-|...|+.++|.+.++++..-.. ....+...+..++-+.++ .+.+..++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4455556666666666666665542111 122333344444444321 2344555555554443
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.06 E-value=49 Score=24.78 Aligned_cols=61 Identities=7% Similarity=-0.017 Sum_probs=35.4
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC--CCCcCHhHHHHHHHHHHcCCCh
Q 017234 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 99 ~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 159 (375)
.+.+.|..-+..-..++..+...++.-.|.++++.+.+. +...+..|.-.-++.+.+.|-+
T Consensus 23 ~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344445544444555666666666666677777766665 5455555555556666666643
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.00 E-value=41 Score=22.61 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 017234 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (375)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (375)
.++..+.+.|+ .+......+-. .......+.|.++++.+..+|... |..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~A------f~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQA------LPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTH------HHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHH------HHHHHHHHHHcCcHHHHH
Confidence 36666666663 34443333222 001246788888888888776433 777888887767755443
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.88 E-value=51 Score=27.88 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=14.4
Q ss_pred HHccCChHHHHHHHHHHHH
Q 017234 224 SLKARDFDSVDRFYEEMMS 242 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~ 242 (375)
+...|++++|...|+.+..
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3457888888888888764
No 318
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=49.56 E-value=72 Score=24.29 Aligned_cols=115 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHH
Q 017234 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (375)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (375)
..+.+..+++.+.+.|.-.|..--...+....+.|.+. ...+-.++.+.|+.+ .+....+..+......+.|..+.+
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~--~~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD--NIAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH--HHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH--HHHHHHHHhCCchhHHHHHHHHHH
Confidence 34567788888888887665555556666666554433 355666777888643 333333322211122344555555
Q ss_pred HHH-hCCCCCchHHHHHHHHHHHHHhhCC-HHHHHHHHHHHH
Q 017234 309 TLT-KCNQSPEVLLHFFSGIIRLYALSDR-LDDVEYSVGRMG 348 (375)
Q Consensus 309 ~~~-~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 348 (375)
+-. .....++... ..-++..+.+.|- ++.+..+++++.
T Consensus 125 Kk~~~~~~~~~~~~--~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNK--QNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHH--HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHH--HHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 432 2111222222 4556666677774 566666766654
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.47 E-value=54 Score=24.13 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHCCCCcCHHhHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 205 NIAAGFSVNVQTYESLIHGSLKAR-DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 205 m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444443322 223333333333 34445555555555444444444444444444444
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.93 E-value=54 Score=23.58 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 103 GNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 103 ~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
.|..-+..-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333444444444444 45555566666555544445555444455555444
No 321
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.79 E-value=91 Score=23.80 Aligned_cols=32 Identities=22% Similarity=-0.076 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 017234 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (375)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (375)
|...-..|+.+...|...|+.++|+..+..--
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 43444447888888889999999998886543
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.66 E-value=52 Score=20.97 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHCCCCcCHHhHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 205 NIAAGFSVNVQTYESLIHGSLKAR-DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 205 m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444433322 23334443332 33344455555544443334444444444444443
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.25 E-value=61 Score=23.80 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=33.7
Q ss_pred hhcCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 100 MLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 100 m~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
+...|..-+..-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 33444433444445555555554 5556666776666665555666655566666666543
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=47.06 E-value=63 Score=25.18 Aligned_cols=54 Identities=4% Similarity=-0.101 Sum_probs=28.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCc---------hHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 017234 291 VKCYCELGRVDELEEQLETLTKCNQSPE---------VLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (375)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (375)
+...+..|+.+-+..+++.+.+.|..+. ..- . .-+...++.|+.+-+..+++.=
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g--~-tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG--L-TPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS--C-CHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC--C-CHHHHHHHcCCHHHHHHHHhcC
Confidence 3344566777766666666666654331 111 1 2234445667766555555443
No 325
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=46.53 E-value=19 Score=29.43 Aligned_cols=23 Identities=4% Similarity=0.185 Sum_probs=11.2
Q ss_pred CcccHHHHHHHHhcCChHHHHHH
Q 017234 70 SQFSWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~ 92 (375)
|..-.+.|..++..|+.+....+
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~L 32 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESL 32 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTH
T ss_pred CcccchHHHHHHHcCCHHHHHHH
Confidence 34444455555555555555444
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.33 E-value=80 Score=26.83 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=103.3
Q ss_pred hHHHHHHhhcCCcchHHHHHHHhhhccCCCCcc---cHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 017234 40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF---SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (375)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~ 116 (375)
.+.| +..+..+..++.+ .+.+.|..++.. -++.|..++..|+.+-+..+ ++.-. .++...-.+.+.
T Consensus 21 ~t~L-~~Aa~~g~~~~v~---~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~---~~~~~~g~t~L~ 89 (364)
T 3ljn_A 21 MEKI-HVAARKGQTDEVR---RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGE---VHSLWHGQKPIH 89 (364)
T ss_dssp HHHH-HHHHHHTCHHHHH---HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCC---CCCCBTTBCHHH
T ss_pred CCHH-HHHHHcCCHHHHH---HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCC---CccccCCCCHHH
Confidence 4444 4444555554433 333445655543 35567666888887665555 33321 222211223455
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCcCH--------------------hHHHHHHHHHHcCC--ChHHHHHHHHHHHhCCC
Q 017234 117 LSGKVQNVPFAMHVFTSMEAQGIKPDS--------------------AVFNSLICACLCSG--DVVTALSLFEIMVSSEE 174 (375)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 174 (375)
..+..|+.+-+..+++.....|..++. .-.+. +...+..| +.+-+..+++. |
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~-----g 163 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQL-----G 163 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHH-----T
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHc-----C
Confidence 556778888888888876655544443 11233 34445566 55444444433 3
Q ss_pred CCCCh---hcHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCc---CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 017234 175 YKPNS---KTYDAFISGFSSLGNVDAMNKWYAANIA-AGFSV---NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247 (375)
Q Consensus 175 ~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 247 (375)
..++. .-.+.|. ..+..|+.+-+..+++.-.. .+..+ |..-.+. +...+..|+.+-+ +.+.+.|..+
T Consensus 164 a~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~gad~ 237 (364)
T 3ljn_A 164 ASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVA----MRFVEMGIDV 237 (364)
T ss_dssp CCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHH----HHHHTTTCCT
T ss_pred CCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHH----HHHHHcCCCC
Confidence 33333 2233444 34566776554444433211 00002 2222233 3344566776544 4445556544
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 248 SI---PILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 248 ~~---~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
+. .-.+. +...+..|+.+-+..+++.
T Consensus 238 ~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 238 NMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 32 22223 3344556887777777765
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.07 E-value=44 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 017234 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (375)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 298 (375)
-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444433334444333444444444
No 328
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=44.55 E-value=47 Score=27.12 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=17.0
Q ss_pred CCCcccHHHHHHHHhcCChHHHHHH
Q 017234 68 NSSQFSWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~ 92 (375)
+.|..-.+.|+.++..|+.+-...+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~L 30 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYL 30 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCccchhHHHHHHHcCCHHHHHHH
Confidence 3455556778888888887766555
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.31 E-value=71 Score=24.95 Aligned_cols=207 Identities=12% Similarity=0.020 Sum_probs=95.4
Q ss_pred HHHhhcCCcchHHHHHHHhhhccCCCCc---ccHHHHHHHHhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 017234 44 ISRLLQVPVSQIKTTLDSVDIFAFNSSQ---FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120 (375)
Q Consensus 44 l~~l~~~~~~~~~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~ 120 (375)
++..+..+..+..+ .+.+.|..++. .-++.+..++..|+.+-+..+ ++.-......+....+ .+...+.
T Consensus 15 L~~A~~~g~~~~v~---~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVDICH---MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGST-CLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHHHHH---HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCC-HHHHHHH
T ss_pred HHHHHHcCcHHHHH---HHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCc-HHHHHHH
Confidence 44444555554433 33344554443 334556666777876654444 3321111112322222 3344445
Q ss_pred cCChhHHHHHHHHHHHCC-CCc---CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChh---cHHHHHHHHHcCC
Q 017234 121 VQNVPFAMHVFTSMEAQG-IKP---DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK---TYDAFISGFSSLG 193 (375)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~~ll~~~~~~~ 193 (375)
.|+.+-+..+ .+.| ..+ +..-.+ .+...++.|+.+-+..++ + .|..++.. -.+.+ ...+..|
T Consensus 87 ~~~~~~~~~L----l~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~-~g~~~~~~~~~g~t~L-~~A~~~~ 155 (237)
T 3b7b_A 87 KGHYEVVQYL----LSNGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLL----S-KGSDINIRDNEENICL-HWAAFSG 155 (237)
T ss_dssp TTCHHHHHHH----HTTTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----H-TTCCTTCCCTTSCCHH-HHHHHHC
T ss_pred cCCHHHHHHH----HhCCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHH----H-CCCCCCccCCCCCCHH-HHHHHCC
Confidence 6665544443 4443 222 122222 234445667665444333 3 34333322 22233 3334456
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQT--YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP--ILEKVLEGLCARRKLDRVK 269 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~ 269 (375)
..+ +++.+.+.|..++... -.+.+...++.|+.+-+. .+.+.|..++.. .-.+-+......|+.+.+.
T Consensus 156 ~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 156 CVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV----LFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH----HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHH----HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 644 4555566665554321 122344455667765443 344555444321 1112334445677888888
Q ss_pred HHHHHHHh
Q 017234 270 SFLKFLLG 277 (375)
Q Consensus 270 ~~~~~~~~ 277 (375)
++.+.+.+
T Consensus 228 ~l~~~l~d 235 (237)
T 3b7b_A 228 QMSKALQD 235 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 88887765
No 330
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=44.13 E-value=62 Score=23.55 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=11.3
Q ss_pred cHHHHHHHHhcCChHHHHHH
Q 017234 73 SWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~ 92 (375)
..+.+..+++.|+.+....+
T Consensus 8 ~~~~l~~A~~~g~~~~v~~l 27 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKL 27 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHhCCHHHHHHH
Confidence 34455555666666555554
No 331
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.04 E-value=1.6e+02 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.503 Sum_probs=10.0
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 017234 221 IHGSLKARDFDSVDRFYEEM 240 (375)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~m 240 (375)
+.......+.+++.+.++++
T Consensus 83 ~~~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHH
Confidence 33444445555555555544
No 332
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.87 E-value=1.4e+02 Score=25.01 Aligned_cols=65 Identities=8% Similarity=0.121 Sum_probs=35.7
Q ss_pred HHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh--hHHHHHHHHHHHCCCCcCHhH
Q 017234 75 DALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV--PFAMHVFTSMEAQGIKPDSAV 145 (375)
Q Consensus 75 ~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~ 145 (375)
..+|.- +..|+.+++... ++++..... .......++......++- +.+-.++..+.. ++-+....
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~----l~el~~p~~-~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i 74 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEM----LRDLNLGEM-KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 74 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHH----HHTTCCGGG-GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH----HHHhCCcch-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 456777 799999999999 566542222 222233344444444432 336666777754 44433333
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.50 E-value=65 Score=23.48 Aligned_cols=56 Identities=2% Similarity=-0.082 Sum_probs=28.6
Q ss_pred hcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCC
Q 017234 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (375)
Q Consensus 101 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (375)
.+.|...+..-..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 11 ~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344433333444444444444 4556666666665554555555555555555555
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.24 E-value=1.9e+02 Score=25.83 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
.++.+.|+..+.+|.+.|..|....-..++.+.-..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 3556666666666666665444333333333443333
No 335
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.12 E-value=1e+02 Score=22.83 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 280 (375)
.+.+..+++.+.+.|.-.|..--...+....+.| .....+-.++.+.|+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 3444555555555554433333333333333322 123344445555554
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.46 E-value=76 Score=23.70 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 263 (375)
.++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444455444443 33334444333344444444
No 337
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.29 E-value=1.2e+02 Score=23.23 Aligned_cols=153 Identities=8% Similarity=-0.058 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHH
Q 017234 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 185 (375)
+|..+-...+..+.+.++.+....+.+ +.. .++..+-...+.++.+.|+.+.. ..+..+.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~----~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK----DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc----CCCHHHHHHH
Confidence 455555556666666665333333332 222 23555555555566555553333 22333322 2455555555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 017234 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (375)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (375)
+.++.+.++.+ +...+.++.+ .++..+-...+.++...|+.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 55555555532 2233333332 245555555555555555543 3333333332 3455555555555555554
Q ss_pred HHHHHHHHHHH
Q 017234 266 DRVKSFLKFLL 276 (375)
Q Consensus 266 ~~a~~~~~~~~ 276 (375)
..+...+..+.
T Consensus 173 ~~~~~~L~~~l 183 (211)
T 3ltm_A 173 ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.22 E-value=1.1e+02 Score=22.89 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHHCCCCc--CHhHHHHHHH------HHHcCCChHHHHHHHHHHHh
Q 017234 122 QNVPFAMHVFTSMEAQGIKP--DSAVFNSLIC------ACLCSGDVVTALSLFEIMVS 171 (375)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~ 171 (375)
|++=+|.++|+..-...-.+ ....|..||. ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555554433233 2334444444 11234555555555555443
No 339
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=41.18 E-value=47 Score=23.90 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHH
Q 017234 76 ALITSLQSSSPKKAQLV 92 (375)
Q Consensus 76 ~li~~~~~~~~~~a~~~ 92 (375)
.+..++..|+.+....+
T Consensus 5 ~L~~A~~~g~~~~v~~l 21 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRL 21 (156)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34445666776666655
No 340
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.08 E-value=1.6e+02 Score=24.79 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=12.1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHH
Q 017234 213 NVQTYESLIHGSLKARDFDSVDRF 236 (375)
Q Consensus 213 ~~~~~~~ll~~~~~~g~~~~a~~~ 236 (375)
++.....+...|.+.|++.+|+.-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444455555555555555555443
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.52 E-value=46 Score=24.09 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 017234 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (375)
Q Consensus 219 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (375)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444445555555555555444455454444455544443
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.98 E-value=63 Score=25.81 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=8.5
Q ss_pred HhcCCHHHHHHHHHHH
Q 017234 260 CARRKLDRVKSFLKFL 275 (375)
Q Consensus 260 ~~~g~~~~a~~~~~~~ 275 (375)
++.|+.+-+..+++.-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 3455555555555544
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.92 E-value=51 Score=23.85 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
..-..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 334456666666666677777777777776666676666666777766643
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.74 E-value=74 Score=20.19 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
-.+.++.+.+.+.+...+..|....+..+.+.
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33444444444433333333333334433333
No 345
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.52 E-value=1.1e+02 Score=22.30 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=35.7
Q ss_pred CcCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 211 SVNVQTYESLIHGSLKARDF---DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 211 ~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
.|+..+--...-++.+..+. .++..+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34555444445555555443 345556666655431112233334445666666666666666666653
No 346
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.49 E-value=23 Score=21.39 Aligned_cols=34 Identities=29% Similarity=0.228 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HhhC
Q 017234 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLY-ALSD 335 (375)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g 335 (375)
.++|+..|.+|.+..-.++..+ |...++.+ ++-.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~ws--weqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWS--FSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCC--HHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCc--HHHHHHHhccCCC
Confidence 3567777777665444444555 77777777 4443
No 347
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.32 E-value=2.6e+02 Score=26.28 Aligned_cols=114 Identities=8% Similarity=-0.005 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhHHHHHHH----HHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHH
Q 017234 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLIC----ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198 (375)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 198 (375)
+.+.|...|....+.+ ..+......+-. .+...+...++...+..... . ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHH
Confidence 5667777776665432 223322222222 22233324455555555443 2 23322233333334456777777
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
...|+.|...... .....-=+..++...|+.++|..+|..+.
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776553221 23333444556666777777777776654
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.22 E-value=1.4e+02 Score=23.26 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC
Q 017234 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (375)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 228 (375)
-.+++.|+-++.+|.+.| .|.-..-..++-+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 344444555555555544 444443344444443333
No 349
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=36.89 E-value=1.3e+02 Score=22.98 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 017234 74 WDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~ 92 (375)
++.+..++..|+.+-...+
T Consensus 59 ~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 59 RTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHH
Confidence 4445555666665544433
No 350
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.71 E-value=88 Score=24.85 Aligned_cols=49 Identities=6% Similarity=0.010 Sum_probs=25.7
Q ss_pred HHHhhcCCcc-hHHHHHHHhhhccCCCCc-------ccHHHHHHHHhc---CChHHHHHH
Q 017234 44 ISRLLQVPVS-QIKTTLDSVDIFAFNSSQ-------FSWDALITSLQS---SSPKKAQLV 92 (375)
Q Consensus 44 l~~l~~~~~~-~~~~~~~~m~~~~~~p~~-------~~~~~li~~~~~---~~~~~a~~~ 92 (375)
+...++.+.. .+..+++.+.+.|..++. .-++.|..++.. |+.+-+..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~L 65 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHH
Confidence 3334444544 334566655555555443 445556666665 666655555
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.70 E-value=69 Score=22.79 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCCh
Q 017234 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (375)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (375)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555555666677777777777766566666666667777766643
No 352
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.62 E-value=1.5e+02 Score=23.06 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHH
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 189 (375)
.+.+.|+-++-+|.+ .|-.|....=..++.+.
T Consensus 21 SDpDAAly~LaRMl~-~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILT-AGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 445555555555554 44344333333333333
No 353
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.41 E-value=1.7e+02 Score=26.69 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 017234 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSI--PILE-KVLEGLCARRKLDRVKSFLKFLLGG 278 (375)
Q Consensus 214 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~--~~~~-~li~~~~~~g~~~~a~~~~~~~~~~ 278 (375)
...+|.++..|...+.++.|..+..+..-- ...++. .+|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456777777788888888888877776421 001111 2222 2233455667788887777776653
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.28 E-value=2.3e+02 Score=25.20 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC
Q 017234 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (375)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 229 (375)
+.++.+.|+.++.+|.+.|.+|....-..+..++-.-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 457888888888888888877666555555555555543
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.96 E-value=63 Score=23.01 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=16.9
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 017234 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (375)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (375)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334444444444444433334444333444444333
No 356
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=35.86 E-value=1.9e+02 Score=23.98 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=7.3
Q ss_pred HHHHHHHhcCChHHHH
Q 017234 75 DALITSLQSSSPKKAQ 90 (375)
Q Consensus 75 ~~li~~~~~~~~~~a~ 90 (375)
+.|..++..|+.+-+.
T Consensus 60 t~L~~A~~~g~~~~v~ 75 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQ 75 (351)
T ss_dssp CHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHcCCHHHHH
Confidence 3444445555544333
No 357
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=35.73 E-value=66 Score=25.61 Aligned_cols=55 Identities=9% Similarity=-0.067 Sum_probs=27.6
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCcCH-------hHHHHHHHHHHcC---CChHHHHHHHHHHH
Q 017234 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDS-------AVFNSLICACLCS---GDVVTALSLFEIMV 170 (375)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~ 170 (375)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCC
Confidence 44445566666666666666655544332 223333333 333 66655555555433
No 358
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.69 E-value=2.1e+02 Score=24.45 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHH
Q 017234 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325 (375)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 325 (375)
.-|......+...|.+.+++.+|...|- .|-.+....+..++.-+...+...++ ... ..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~----------------dlf-ia 191 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA----------------PLY-CA 191 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH----------------HHH-HH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH----------------HHH-HH
Confidence 3455666677778888888888877662 23333335554444333333321111 111 23
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 326 GIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
..+--|...++...|..+++...+
T Consensus 192 RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 192 RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334446677888888877666554
No 359
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=35.67 E-value=48 Score=25.74 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=12.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCccC
Q 017234 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKS 356 (375)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 356 (375)
+...+..|+.+-+..+++ +.|..++.
T Consensus 178 L~~A~~~~~~~~v~~Ll~---~~ga~~~~ 203 (228)
T 2dzn_A 178 LFHALAEGHGDAAVLLVE---KYGAEYDL 203 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH---HHCCCSCC
T ss_pred HHHHHHcCCHHHHHHHHH---hcCCCCCc
Confidence 344456677654444442 33554443
No 360
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.09 E-value=3.6e+02 Score=26.72 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCH---HHHHHHHHHHHHCC----CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017234 184 AFISGFSSLGNV---DAMNKWYAANIAAG----FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256 (375)
Q Consensus 184 ~ll~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (375)
.++...|+.|.. +.|.+.|++....+ +.||.. ..+...-.+.|.-++-..+++..+.. .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 456667777763 56777787765532 445432 33334444567766666677777653 3444456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 017234 257 EGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
.+++...+.+...++++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~ 788 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPD 788 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCC
Confidence 88888888888888887776543
No 361
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.90 E-value=2.6e+02 Score=25.14 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=38.6
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHH
Q 017234 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (375)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (375)
|..-.+. +..|++++|.++ -..-.++-..+..|.+.+-..=...|+..--+..|..+.+.| +.+..----+++.
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~----aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~ 438 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKV----AANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRP 438 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHH----HHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHH
Confidence 3333334 455666666555 233323333455555554444444455555555555555544 3333333334444
Q ss_pred HHcCCChHHH
Q 017234 153 CLCSGDVVTA 162 (375)
Q Consensus 153 ~~~~g~~~~a 162 (375)
-...|+.+-.
T Consensus 439 vL~q~r~~ll 448 (494)
T 1bpo_A 439 VLQQGRKQLL 448 (494)
T ss_dssp HHHTTCHHHH
T ss_pred HHhccHHHHH
Confidence 4444444333
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.66 E-value=2.8e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 017234 285 NMAQKLVKCYCELGRVDELEEQLETL 310 (375)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (375)
..+|.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34555555555555555555555554
No 363
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=33.13 E-value=1.2e+02 Score=21.03 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=4.9
Q ss_pred HHHHHhcCChHH
Q 017234 77 LITSLQSSSPKK 88 (375)
Q Consensus 77 li~~~~~~~~~~ 88 (375)
+..++..|+.+.
T Consensus 18 l~~A~~~g~~~~ 29 (136)
T 2jab_A 18 LLEAARAGQDDE 29 (136)
T ss_dssp HHHHHHHTCHHH
T ss_pred HHHHHHhCCHHH
Confidence 333344444433
No 364
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.46 E-value=1.8e+02 Score=22.68 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=10.7
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 017234 292 KCYCELGRVDELEEQLETLTK 312 (375)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~ 312 (375)
-.|.+.|.+++|.++|++.-.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 345555555555555555433
No 365
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.08 E-value=1.6e+02 Score=22.15 Aligned_cols=142 Identities=11% Similarity=-0.039 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 017234 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (375)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 221 (375)
+..+-...+.++.+.|..+....+.+.+ . .++..+-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4444444444444444433333333333 2 244444445555555555542 2333333333 25666666666
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh
Q 017234 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (375)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (375)
.++.+.|+.+.... +..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 98 VALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 67776666543333 333332 355555566666666666543 3333334433 24566666666666666653
No 366
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.62 E-value=86 Score=20.68 Aligned_cols=59 Identities=7% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCH
Q 017234 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (375)
..+++.+.+.|+ .+..-+..+-. .....++|.++++.+..+|. .. |..++.++.+.|..
T Consensus 25 ~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~----~a--f~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 25 SYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDN----DS--YVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCH----HH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCH----HH--HHHHHHHHHHcCHH
Confidence 345555555553 33333333332 24556677777777765542 12 66666666666653
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=31.25 E-value=70 Score=22.63 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHH
Q 017234 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164 (375)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 164 (375)
--.|...+.+++.+-|.++++-+.+.| +...|.+++-.|...=++|-+++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 345555556666666666666666554 55555555555555555554444
No 368
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.75 E-value=2e+02 Score=22.66 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC
Q 017234 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (375)
Q Consensus 157 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 193 (375)
.+.+.|+-++-+|.+ .|-.|....=..++.+.-..|
T Consensus 49 SDpDAALywLaRMl~-~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 49 SDPDATLYWLANMVE-AGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhcc
Confidence 455555555555555 444444444444444444433
No 369
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.23 E-value=83 Score=26.89 Aligned_cols=64 Identities=6% Similarity=0.115 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC-ChHHHHHHHHHHHHCCCC
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-DFDSVDRFYEEMMSLGII 246 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~ 246 (375)
...++.-|...|+.++|...++++..-+.. ...+...+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 567788888888888888888777532211 2233333333333221 234455666666665543
No 370
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=29.71 E-value=88 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017234 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
+++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...|
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 34444555666666666666666665555666666666666555
No 371
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.99 E-value=4.3e+02 Score=26.12 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCC---hHHHHHHHHHHHhC---CCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 017234 146 FNSLICACLCSGD---VVTALSLFEIMVSS---EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (375)
Q Consensus 146 ~~~li~~~~~~g~---~~~a~~~~~~m~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (375)
-..++...|+.|. .+.|.+.|+..... ..++||.. ..+...-.+.|..++-..+++..... .+..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHH
Confidence 3456777788887 45788888887652 12455543 23333344567766666677777764 34555677
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH---hCCCCcCHHHHHHHHHHH
Q 017234 220 LIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLL---GGGWKINENMAQKLVKCY 294 (375)
Q Consensus 220 ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~ 294 (375)
++.+++...+.+...++++.....+ +++.. .. .++.+... ....+.+.+.+.+=. ...+......+..++...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQD-AT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888899888888888776543 33322 22 23333332 222344555544321 112223444567777776
Q ss_pred HHcCChHHHHHHHHHHHh
Q 017234 295 CELGRVDELEEQLETLTK 312 (375)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~ 312 (375)
...-.-++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 655444444444455444
No 372
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=28.95 E-value=1.7e+02 Score=21.28 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=11.7
Q ss_pred CCCcccHHHHHHHHhcCChHHHHHH
Q 017234 68 NSSQFSWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~ 92 (375)
.|.....+.+..+++.|+.+....+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~L 33 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRIL 33 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHH
Confidence 3444445555555666666554444
No 373
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=28.75 E-value=2.3e+02 Score=22.90 Aligned_cols=14 Identities=7% Similarity=-0.090 Sum_probs=6.7
Q ss_pred HHHHHHHhcCChHH
Q 017234 75 DALITSLQSSSPKK 88 (375)
Q Consensus 75 ~~li~~~~~~~~~~ 88 (375)
+.|..++..|+.+-
T Consensus 94 t~L~~A~~~g~~~~ 107 (285)
T 3d9h_A 94 SPLHEACLGGHLSC 107 (285)
T ss_dssp CHHHHHHHTTCHHH
T ss_pred CHHHHHHHCCcHHH
Confidence 34444455555443
No 374
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=28.71 E-value=1.7e+02 Score=21.25 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=26.7
Q ss_pred hHHHHHHhhcCCcchHHHHHHHhhhccCCCC---cccHHHHHHHHhcCChHHHHHH
Q 017234 40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSS---QFSWDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~a~~~ 92 (375)
....+...++.+..+..+.+ .+.|..++ ..-++.|..++..|+.+-...+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~L---l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 66 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRIL---MANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHH---HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHcCCHHHHHHH---HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 33444555555665443333 33455443 3345566666888886655544
No 375
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.65 E-value=1.8e+02 Score=24.69 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 017234 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (375)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 223 (375)
....++.-|...|+.++|...++++.. .... ...+...+..+.-+.. ..+.+..++..+.+.|+ .+-..+..|
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~G 86 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS-PSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC-GGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-cccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHH
Confidence 467788999999999999999998864 1110 1112222222222211 23445566666665443 223333333
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH---HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 017234 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDR---VKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (375)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (375)
+. ...+.++++.- + .|....+-.-+-+.+ ..|-+.. ...+.+.+.+.| ........++..+.+...
T Consensus 87 f~------~~~~~l~Dl~l-D-iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g 156 (339)
T 1ug3_A 87 LY------EILELAEDMEI-D-IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMG 156 (339)
T ss_dssp HH------HHHHHHHHHTT-T-CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHC
T ss_pred HH------HHHhhChHhhc-C-ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcC
Confidence 32 22233333322 2 477666555544433 3343332 112233333334 234556667777777777
Q ss_pred hHHHHHHHHH
Q 017234 300 VDELEEQLET 309 (375)
Q Consensus 300 ~~~a~~~~~~ 309 (375)
.+.+.+++.+
T Consensus 157 ~~~l~~~~~~ 166 (339)
T 1ug3_A 157 PKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777763
No 376
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.61 E-value=2.8e+02 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=13.0
Q ss_pred HHHHHCCCCcCHhHHHHHHHHHHcC
Q 017234 132 TSMEAQGIKPDSAVFNSLICACLCS 156 (375)
Q Consensus 132 ~~m~~~g~~p~~~~~~~li~~~~~~ 156 (375)
+...+.++++|......++..+...
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4444555566655555555554443
No 377
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.49 E-value=92 Score=21.90 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=8.9
Q ss_pred hccCChhHHHHHHHHHH
Q 017234 119 GKVQNVPFAMHVFTSME 135 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~ 135 (375)
...++++.|.++...+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555555444
No 378
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.96 E-value=96 Score=20.14 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
.++|...|.+|....++.|+. +|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 466777777777655655544 56666655444
No 379
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.89 E-value=2.4e+02 Score=22.02 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=7.7
Q ss_pred CChHHHHHHHHHHHh
Q 017234 157 GDVVTALSLFEIMVS 171 (375)
Q Consensus 157 g~~~~a~~~~~~m~~ 171 (375)
.+.+.|+-++-+|.+
T Consensus 28 SDpDAAly~LaRml~ 42 (204)
T 2r9g_A 28 SDVDAALHYLARLVE 42 (204)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 445555555555554
No 380
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.82 E-value=2.3e+02 Score=22.56 Aligned_cols=57 Identities=5% Similarity=0.077 Sum_probs=29.7
Q ss_pred ccccchHHHHHHhhcCCcc-hHHHHHHHhhhccCCC-------CcccHHHHHHHHhc---CChHHHHHH
Q 017234 35 TSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNS-------SQFSWDALITSLQS---SSPKKAQLV 92 (375)
Q Consensus 35 ~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~~~~p-------~~~~~~~li~~~~~---~~~~~a~~~ 92 (375)
++..-.+.|..++. .+.. .+..+++.....+... |..-++.|..++.. |+.+-+..+
T Consensus 9 ~d~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 9 PRLYDRRSIFDAVA-QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp --CCCHHHHHHHHH-TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred CCcccchHHHHHHH-cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 34444555555544 4544 4455666555444332 44556667777543 666655555
No 381
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=25.59 E-value=1.5e+02 Score=21.84 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=7.2
Q ss_pred HHHHHhcCChHHHHHH
Q 017234 77 LITSLQSSSPKKAQLV 92 (375)
Q Consensus 77 li~~~~~~~~~~a~~~ 92 (375)
+..++..|+.+....+
T Consensus 9 l~~A~~~g~~~~v~~l 24 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLW 24 (179)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3344455554444444
No 382
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.36 E-value=3e+02 Score=23.11 Aligned_cols=127 Identities=9% Similarity=-0.032 Sum_probs=65.3
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHccCCh-----HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017234 202 YAANIAAGFSVNVQTYESLIHGSLKARDF-----DSVDRFYEEMMSLG--IIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (375)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (375)
.+-..+.+.+++.....-++..+.....- .-..+......+.| ..-|......+...|.+.|++.+|...|-
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i- 158 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM- 158 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-
Confidence 44445556666666666666555443211 11222222223332 23466677777788888888888777553
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 017234 275 LLGGGWKINENMAQKLVKCYCEL---GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (375)
.|-.-|...+..++.-+... |...++- +| ....+--|...|+...|..+|....+
T Consensus 159 ---~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d-lf----------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 ---LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA-EF----------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH-HH----------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---hCCCccHHHHHHHHHHHHHhcCCCCcchHH-HH----------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22111344544444333333 3322211 11 22233346677888888888876653
No 383
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.37 E-value=2.4e+02 Score=21.56 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCCCcccHHHHHHH--HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCCCC
Q 017234 67 FNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140 (375)
Q Consensus 67 ~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 140 (375)
+.|...-|..|+.. +-.|+..+++-++ . +.+.....-|..+ +|-+.+++..|+..++.+.+..+.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L----~---~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHL----H---KLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHH----H---TCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHH----H---hcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 45555577777776 5888888887773 2 2222223333333 455778899999999888865544
No 384
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.30 E-value=76 Score=19.08 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=15.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCcc
Q 017234 334 SDRLDDVEYSVGRMGKQGLSFK 355 (375)
Q Consensus 334 ~g~~~~A~~~~~~m~~~~~~~~ 355 (375)
.-+++.|...|.+++..|-.|.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCG
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 3467888888888877665443
No 385
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.80 E-value=2.1e+02 Score=20.59 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.6
Q ss_pred HHHHHHHhcCChH
Q 017234 75 DALITSLQSSSPK 87 (375)
Q Consensus 75 ~~li~~~~~~~~~ 87 (375)
+.|..++..|+.+
T Consensus 38 t~L~~A~~~~~~~ 50 (167)
T 3v31_A 38 TPLMWAAAHGQIA 50 (167)
T ss_dssp CHHHHHHHTTCHH
T ss_pred CHHHHHHHCCCHH
Confidence 3344444445433
No 386
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.78 E-value=1.7e+02 Score=19.53 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.3
Q ss_pred hHHHHHHHHHH
Q 017234 125 PFAMHVFTSME 135 (375)
Q Consensus 125 ~~a~~~~~~m~ 135 (375)
+.|.++++.+.
T Consensus 54 ~~ar~Lld~L~ 64 (97)
T 3ygs_P 54 DQARQLIIDLE 64 (97)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 387
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.81 E-value=1.3e+02 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 017234 216 TYESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 216 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
....++.-|...|+.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567777888888888888888876
No 388
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.70 E-value=3.7e+02 Score=23.14 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=14.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 017234 217 YESLIHGSLKARDFDSVDRFYEEMM 241 (375)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~m~ 241 (375)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3555555666666666666666654
No 389
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.55 E-value=1.3e+02 Score=23.20 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=7.2
Q ss_pred cHHHHHHHHhcCChHH
Q 017234 73 SWDALITSLQSSSPKK 88 (375)
Q Consensus 73 ~~~~li~~~~~~~~~~ 88 (375)
-++.|..++..|+.+-
T Consensus 36 g~t~L~~A~~~~~~~~ 51 (228)
T 2dzn_A 36 GRIPLHWSVSFQAHEI 51 (228)
T ss_dssp SCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHcCCHHH
Confidence 3444444455554433
No 390
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.43 E-value=1.4e+02 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCccCchhHHHHH
Q 017234 342 YSVGRMGKQGLSFKSAEDVEMES 364 (375)
Q Consensus 342 ~~~~~m~~~~~~~~~~~~~~~~~ 364 (375)
.+.+-+++.|+.|+.|.++..++
T Consensus 77 ki~~iLk~~gl~p~iPEDL~~Lt 99 (158)
T 3j20_Q 77 TITRILEKHGLAPEIPEDLMFLI 99 (158)
T ss_dssp CTHHHHHHHTCSCSSCHHHHHHH
T ss_pred cHHHHHHHcCCCCCCHHHHHHHH
Confidence 45666777888888888877644
No 391
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.38 E-value=5.9e+02 Score=25.35 Aligned_cols=108 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCh--------------
Q 017234 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-------------- 179 (375)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------- 179 (375)
++..|...|.++-|.++.... +.++..--.+..+|...|++++|...|++.- .|+..+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchhhhhhccC
Q ss_pred ---------hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHccC
Q 017234 180 ---------KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ----TYESLIHGSLKAR 228 (375)
Q Consensus 180 ---------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g 228 (375)
.-|..++..+-+.+.++-+.++-+...+.--+-|.. .|+.++++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 392
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.90 E-value=1.1e+02 Score=19.22 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHc
Q 017234 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (375)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 191 (375)
..++|...|.+|.+..++.|+. +|...+..+..
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~ 45 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIIN 45 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 3567777777777655555543 56666665544
No 393
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.82 E-value=1.3e+02 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.023 Sum_probs=6.9
Q ss_pred HcCCChHHHHHHHHH
Q 017234 154 LCSGDVVTALSLFEI 168 (375)
Q Consensus 154 ~~~g~~~~a~~~~~~ 168 (375)
++.|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 345555444444433
No 394
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.76 E-value=3e+02 Score=21.74 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 017234 74 WDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~ 92 (375)
++.|..++..|+.+-+..+
T Consensus 37 ~t~L~~A~~~g~~~~v~~L 55 (261)
T 2xai_A 37 VSPLHEACLGGHLSCVKIL 55 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHH
Confidence 3344444555655443333
No 395
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.75 E-value=2.6e+02 Score=21.07 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017234 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (375)
..+....+++.+.+.|.--|..--...+....+.|.+. ...+-.++...|+.++ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 35567778888888887755555566666666655442 3556777888887542 22222221111112344555554
Q ss_pred HHHhC-CCCcCHHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 017234 274 FLLGG-GWKINENMAQKLVKCYCELGR-VDELEEQLETL 310 (375)
Q Consensus 274 ~~~~~-~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~ 310 (375)
.-... .-.++.....-++..+.+.|= ++.+..+++.+
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 43221 111222334445555555552 34444455444
No 396
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.71 E-value=2.5e+02 Score=20.80 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017234 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (375)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 280 (375)
.+.+..+++.+.+.|.-.|..--...+....+.| ..-..+-.++...|+
T Consensus 48 ~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KGI 96 (162)
T 3dfg_A 48 PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHGL 96 (162)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcCC
Confidence 3556666666666665444333333344433322 223455556666665
No 397
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.61 E-value=2.6e+02 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-HH-----HhcCCHHHHHHHHHHHH
Q 017234 228 RDFDSVDRFYEEMMSLGIIP--SIPILEKVLE-GL-----CARRKLDRVKSFLKFLL 276 (375)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~~-----~~~g~~~~a~~~~~~~~ 276 (375)
|++=+|-+++++.-.....+ ....|..||+ .. .+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3344444444 11 24466666666665553
No 398
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.53 E-value=3.1e+02 Score=21.89 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCC----hhHHHHHHHHHHHCCCCcCHhHHHHHHHHHHcCCC-----hHHHHHHHHHHHhCCCCC
Q 017234 106 SCLDEYACLIALSGKVQN----VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-----VVTALSLFEIMVSSEEYK 176 (375)
Q Consensus 106 ~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~~ 176 (375)
++..+-...+.++.+.|. ......++..+... .++..+-...+.++.+.|. .+.+...+..+.. .
T Consensus 66 ~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d 139 (280)
T 1oyz_A 66 KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF----D 139 (280)
T ss_dssp SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----C
T ss_pred CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh----C
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccC--ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 017234 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR--DFDSVDRFYEEMMSLGIIPSIPILEK 254 (375)
Q Consensus 177 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ 254 (375)
++..+-...+.+....|+.+..-.+.+.+.. ++..+-...+.++...| ..+....+.+.+. .++...-..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~ 211 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKD----PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIE 211 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTC----SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 017234 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (375)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 327 (375)
.+.++.+.|+.+....+...+.. ++ +-...+.++.+.|+ +.+...+..+.+....++........+
T Consensus 212 A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 212 AIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCCcHHHHHHHHHh
No 399
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=21.52 E-value=1.3e+02 Score=25.21 Aligned_cols=135 Identities=11% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHhhhccCCCCcccHHHHHHH-HhcCChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHC-
Q 017234 60 DSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ- 137 (375)
Q Consensus 60 ~~m~~~~~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 137 (375)
.-..+-|.+|+-..||+++.. ..+|.+ .+-|...| ..+-..++..-....+++..++.++++-..
T Consensus 83 ~V~~~VG~EPSG~~FNsi~~Le~~~g~P----------~NPmINAG---AI~~~sll~~~~~~~r~~~il~~~~~lag~~ 149 (308)
T 2pby_A 83 EVFHKVGMEPTDYPFHSIAKLEEKPAKP----------LNPMINAG---ALVVTSMIQGGSVSERLERLLAFVRRLAGNE 149 (308)
T ss_dssp HHHHHBCSCC----------------CC----------BCTTSHHH---HHHHHTTSCSSSHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhCCCCCCCCCcchhhhhccCCCc----------CCccccHH---HHHHHHhccCCCcHHHHHHHHHHHHHHhCCC
Q ss_pred CCCcCHhHH---------HHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCCChhcHHHHHHHHHcCC----------
Q 017234 138 GIKPDSAVF---------NSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG---------- 193 (375)
Q Consensus 138 g~~p~~~~~---------~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~---------- 193 (375)
.+..|..+| |.-|.-+.+. +++++++++|-+.-. +..+......+...+...|
T Consensus 150 ~i~~d~~v~~SE~~t~~rN~AlA~~lks~g~i~~dv~~~Ld~Yf~qCS---i~vt~~dLA~~~a~LAn~G~~P~tg~~vl 226 (308)
T 2pby_A 150 RISYSDEVARSEFETAFLNRSLCYFLKQHRIIDEDVEELMELYTKQCA---IEMTCIDLARIGLVLALDGRDPHSSEPLM 226 (308)
T ss_dssp TCCBCHHHHHHHHHHCHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHT---BEECHHHHHHHHHHHHTTTBCTTTCCBSS
T ss_pred CCccCHHHHHHHHhccHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc---ccccHHHHHHHHHHHhCCCcCCCCCCEEE
Q ss_pred CHHHHHHHHHHHHHCCC
Q 017234 194 NVDAMNKWYAANIAAGF 210 (375)
Q Consensus 194 ~~~~a~~~~~~m~~~~~ 210 (375)
..+.+..+..-|...|.
T Consensus 227 ~~~~~r~v~a~M~TcGm 243 (308)
T 2pby_A 227 PLDVARICKTFMVTCGM 243 (308)
T ss_dssp CHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHhhcCC
No 400
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=21.25 E-value=6.3e+02 Score=25.26 Aligned_cols=89 Identities=11% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHcCCC---HHHHHHHHHHHHHCC----CCcCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017234 184 AFISGFSSLGN---VDAMNKWYAANIAAG----FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256 (375)
Q Consensus 184 ~ll~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (375)
.++...|..|+ .++|.+.|++....+ ++||... .+.. .. .+.-++-..+++..+.. .+..--..++
T Consensus 753 ~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~--~Vyc-~~-~~~~~~~~~l~~~y~~s---~~~~ek~~ll 825 (967)
T 3se6_A 753 ALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLK--IVYS-VG-AQTTAGWNYLLEQYELS---MSSAEQNKIL 825 (967)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH--HHHH-HH-TTSHHHHHHHHHHHHHC---SCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhh--HhHh-hh-hccHHHHHHHHHHHhcc---CCHHHHHHHH
Confidence 44555566665 456677777665542 2333221 1111 11 12223333444444432 3344456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 017234 257 EGLCARRKLDRVKSFLKFLLGGG 279 (375)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~~ 279 (375)
.+++...+.+...++++......
T Consensus 826 ~aL~ct~d~~ll~~~L~~~l~~~ 848 (967)
T 3se6_A 826 YALSTSKHQEKLLKLIELGMEGK 848 (967)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS
T ss_pred HHhcCCCCHHHHHHHHHHHhCcC
Confidence 77777777777777777666543
No 401
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.24 E-value=1.4e+02 Score=22.32 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC--hHHHHHHHHHHH
Q 017234 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMM 241 (375)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~ 241 (375)
...++.-|...++.++|...++++..... ....-..++......++ -+.+-.++..+.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56788899999999999999999764322 22223333443333333 223455666653
No 402
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.67 E-value=2.2e+02 Score=20.30 Aligned_cols=19 Identities=5% Similarity=-0.094 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 017234 74 WDALITSLQSSSPKKAQLV 92 (375)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~ 92 (375)
++.+..++..|+.+-...+
T Consensus 43 ~t~L~~A~~~~~~~~v~~L 61 (165)
T 3twr_A 43 STPLHFAAGYNRVSVVEYL 61 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHcChHHHHHHH
Confidence 4556666777776554444
No 403
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.46 E-value=3.1e+02 Score=21.34 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHccCC-----hHHHHHHHHHHHHCC
Q 017234 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-----FDSVDRFYEEMMSLG 244 (375)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~ 244 (375)
.+-.+++.|+-++.+|.+.|-.|.-..-..++-+.-..|. ...|...++....-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 4556778888888888887776666666666666555543 223334444444444
No 404
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.29 E-value=2.2e+02 Score=19.63 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=8.5
Q ss_pred hccCChhHHHHHHHHHH
Q 017234 119 GKVQNVPFAMHVFTSME 135 (375)
Q Consensus 119 ~~~~~~~~a~~~~~~m~ 135 (375)
++.|++++|.+.+++..
T Consensus 33 Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555554443
No 405
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=20.19 E-value=3.6e+02 Score=23.36 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=37.9
Q ss_pred cccHHHHHHHHhcC---ChHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHCC
Q 017234 71 QFSWDALITSLQSS---SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG 138 (375)
Q Consensus 71 ~~~~~~li~~~~~~---~~~~a~~~~~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 138 (375)
..+|..+|..+..| ..+++... ++.+..+..++...=..|+-...|.-..++...+.+-|.+.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~----~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWA----MDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHH----HHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 44677777773222 23566665 566666666666655555555666666666666666666543
Done!