BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017235
         (375 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10
 pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (Rod Form B)
 pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (nucleotide-free Form)
          Length = 595

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 62  HASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARAL 119
           H  +Q N +W  S+IG    +P+L   S   +  +    P ++    +  VA VA A+
Sbjct: 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAV 463


>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (plate Form)
          Length = 619

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 62  HASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARAL 119
           H  +Q N +W  S+IG    +P+L   S   +  +    P ++    +  VA VA A+
Sbjct: 437 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAV 494


>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
          Length = 632

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 255 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 314
           GL   W  P   I   +      + V K+L     DR  ++ TLA    V   +  G+ L
Sbjct: 119 GLPVGWEGPNVHIACIIAHQFYRLGVFKELCT---DRALRLQTLAAACAVGLASSFGAPL 175

Query: 315 LLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE 357
             + Y    +A+ Y+ QAF + ++      +   LL+ T L+E
Sbjct: 176 GGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTTPLVE 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,764,770
Number of Sequences: 62578
Number of extensions: 357919
Number of successful extensions: 768
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 5
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)