Query 017235
Match_columns 375
No_of_seqs 318 out of 1951
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 2.4E-47 5.1E-52 371.2 32.0 290 81-373 2-291 (308)
2 PLN02878 homogentisate phytylt 100.0 1.3E-42 2.9E-47 328.8 26.7 241 130-373 21-265 (280)
3 PRK12895 ubiA prenyltransferas 100.0 5.3E-37 1.1E-41 295.1 27.0 261 91-373 2-265 (286)
4 PRK12870 ubiA 4-hydroxybenzoat 100.0 2.8E-36 6.2E-41 291.5 26.2 267 89-374 6-274 (290)
5 PRK13106 ubiA prenyltransferas 100.0 3.9E-35 8.5E-40 284.2 28.3 257 87-359 10-270 (300)
6 PRK12873 ubiA prenyltransferas 100.0 3.2E-35 6.9E-40 283.2 27.2 268 90-373 5-277 (294)
7 PRK12888 ubiA prenyltransferas 100.0 7.4E-35 1.6E-39 280.7 29.0 259 92-371 2-264 (284)
8 PLN02809 4-hydroxybenzoate non 100.0 8.6E-35 1.9E-39 280.7 29.0 267 89-375 3-273 (289)
9 PRK12847 ubiA 4-hydroxybenzoat 100.0 1E-34 2.2E-39 280.1 28.6 266 89-375 4-272 (285)
10 PRK12882 ubiA prenyltransferas 100.0 9.7E-35 2.1E-39 279.0 26.8 264 91-375 3-266 (276)
11 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.2E-34 2.6E-39 278.8 27.2 247 91-359 2-248 (279)
12 PRK12874 ubiA prenyltransferas 100.0 3.9E-34 8.5E-39 276.6 30.0 266 86-371 2-271 (291)
13 TIGR01476 chlor_syn_BchG bacte 100.0 7.6E-35 1.6E-39 280.7 24.5 222 93-324 1-223 (283)
14 TIGR01475 ubiA_other putative 100.0 2E-34 4.3E-39 277.7 27.2 259 92-371 2-263 (282)
15 PRK12392 bacteriochlorophyll c 100.0 5.9E-34 1.3E-38 279.3 30.9 254 88-357 8-272 (331)
16 PRK12886 ubiA prenyltransferas 100.0 5.6E-34 1.2E-38 275.5 29.3 264 88-373 4-269 (291)
17 PLN00012 chlorophyll synthetas 100.0 1.2E-33 2.6E-38 280.8 32.1 217 89-320 82-310 (375)
18 PRK12876 ubiA prenyltransferas 100.0 5.3E-34 1.1E-38 274.9 28.1 266 91-375 3-283 (300)
19 COG0382 UbiA 4-hydroxybenzoate 100.0 6.3E-34 1.4E-38 275.1 28.3 271 85-375 3-275 (289)
20 PRK12848 ubiA 4-hydroxybenzoat 100.0 9.5E-34 2.1E-38 273.0 28.3 264 90-374 3-268 (282)
21 PRK07566 bacteriochlorophyll/c 100.0 1.3E-33 2.9E-38 275.8 29.4 222 89-323 24-250 (314)
22 TIGR02056 ChlG chlorophyll syn 100.0 2.3E-33 4.9E-38 273.2 29.5 224 87-324 11-245 (306)
23 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.7E-33 3.7E-38 271.1 28.2 262 93-375 2-267 (281)
24 PRK12884 ubiA prenyltransferas 100.0 3.4E-33 7.4E-38 268.5 28.1 263 90-374 2-266 (279)
25 PRK04375 protoheme IX farnesyl 100.0 4.4E-33 9.5E-38 270.1 29.0 267 89-375 7-276 (296)
26 PRK05951 ubiA prenyltransferas 100.0 2.2E-32 4.7E-37 265.2 30.9 258 90-359 2-267 (296)
27 PRK12878 ubiA 4-hydroxybenzoat 100.0 1E-32 2.2E-37 269.3 28.6 265 86-374 24-298 (314)
28 PRK12869 ubiA protoheme IX far 100.0 3.9E-32 8.4E-37 261.4 30.0 261 91-373 1-265 (279)
29 TIGR01473 cyoE_ctaB protoheme 100.0 2.4E-32 5.2E-37 263.0 28.4 264 93-375 1-268 (280)
30 PRK06080 1,4-dihydroxy-2-napht 100.0 2.9E-31 6.3E-36 256.9 30.4 226 92-329 3-235 (293)
31 PRK12883 ubiA prenyltransferas 100.0 2.9E-31 6.4E-36 255.0 28.7 208 91-317 2-209 (277)
32 PRK13387 1,4-dihydroxy-2-napht 100.0 8.9E-31 1.9E-35 255.9 30.5 231 92-327 3-254 (317)
33 PRK13362 protoheme IX farnesyl 100.0 7.1E-31 1.5E-35 255.3 29.4 268 87-373 8-279 (306)
34 PRK13595 ubiA prenyltransferas 100.0 4.1E-31 9E-36 253.2 25.7 217 89-323 9-230 (292)
35 PRK07419 1,4-dihydroxy-2-napht 100.0 1.1E-28 2.4E-33 239.4 30.4 227 89-328 9-240 (304)
36 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.8E-28 4E-33 236.1 28.3 216 100-327 1-229 (284)
37 PLN02922 prenyltransferase 100.0 7.3E-28 1.6E-32 234.9 31.1 232 90-328 13-254 (315)
38 COG1575 MenA 1,4-dihydroxy-2-n 100.0 1.4E-27 3E-32 228.0 29.5 227 91-328 7-242 (303)
39 TIGR02235 menA_cyano-plnt 1,4- 100.0 2.2E-27 4.8E-32 228.8 30.4 221 95-328 2-227 (285)
40 PRK12872 ubiA prenyltransferas 100.0 3.7E-28 8.1E-33 234.0 25.0 252 90-358 2-254 (285)
41 PRK13105 ubiA prenyltransferas 100.0 1.3E-27 2.8E-32 229.6 28.3 218 93-326 2-224 (282)
42 PRK12871 ubiA prenyltransferas 100.0 2.7E-27 5.9E-32 229.4 30.2 255 90-367 3-274 (297)
43 PLN02776 prenyltransferase 100.0 8.9E-27 1.9E-31 228.0 27.3 254 98-373 1-259 (341)
44 COG0109 CyoE Polyprenyltransfe 100.0 2.1E-27 4.4E-32 226.3 19.0 266 88-373 14-282 (304)
45 PRK12875 ubiA prenyltransferas 100.0 4E-26 8.6E-31 219.6 26.0 223 88-326 4-229 (282)
46 PRK13591 ubiA prenyltransferas 99.9 1.2E-25 2.6E-30 216.6 27.6 214 90-327 25-244 (307)
47 KOG1381 Para-hydroxybenzoate-p 99.9 9.3E-28 2E-32 222.6 11.4 264 89-373 61-329 (353)
48 PRK13592 ubiA prenyltransferas 99.9 4.9E-26 1.1E-30 217.6 21.7 216 139-374 55-283 (299)
49 PF01040 UbiA: UbiA prenyltran 99.9 1.2E-25 2.6E-30 211.8 21.5 175 123-309 17-193 (257)
50 PRK12324 phosphoribose diphosp 99.8 3.7E-19 8.1E-24 172.1 25.0 149 89-246 8-158 (295)
51 PRK08238 hypothetical protein; 99.8 3.2E-18 7E-23 175.8 25.7 188 87-295 186-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.5 3.1E-15 6.8E-20 142.5 2.7 211 89-319 91-309 (409)
53 KOG4581 Predicted membrane pro 99.2 5.8E-12 1.3E-16 115.3 4.5 227 89-327 58-294 (359)
54 PRK13595 ubiA prenyltransferas 90.6 5.2 0.00011 39.1 12.7 41 273-314 58-101 (292)
55 COG1575 MenA 1,4-dihydroxy-2-n 90.6 3.6 7.7E-05 40.3 11.4 22 145-166 189-210 (303)
56 PRK07419 1,4-dihydroxy-2-napht 90.5 4 8.6E-05 40.1 11.9 36 147-185 189-225 (304)
57 PRK12884 ubiA prenyltransferas 90.2 1.9 4.2E-05 41.3 9.4 43 271-314 46-91 (279)
58 PRK07566 bacteriochlorophyll/c 89.6 3.7 8E-05 40.4 11.0 24 150-173 207-231 (314)
59 PRK13592 ubiA prenyltransferas 89.6 8.6 0.00019 37.6 13.2 45 271-316 55-102 (299)
60 TIGR02056 ChlG chlorophyll syn 88.2 3.3 7.2E-05 40.5 9.5 45 272-317 64-111 (306)
61 TIGR02235 menA_cyano-plnt 1,4- 87.2 8.2 0.00018 37.5 11.5 40 148-190 177-217 (285)
62 PRK12887 ubiA tocopherol phyty 87.0 11 0.00023 37.1 12.2 31 281-312 72-105 (308)
63 PRK12872 ubiA prenyltransferas 86.8 15 0.00032 35.2 13.0 23 151-173 180-203 (285)
64 PF01040 UbiA: UbiA prenyltran 86.6 3.9 8.4E-05 38.0 8.7 35 272-306 33-68 (257)
65 PLN00012 chlorophyll synthetas 86.2 9.6 0.00021 38.6 11.7 23 151-173 271-294 (375)
66 PRK13591 ubiA prenyltransferas 86.1 4.4 9.5E-05 39.8 8.9 22 151-172 198-220 (307)
67 PRK13387 1,4-dihydroxy-2-napht 85.7 4 8.7E-05 40.2 8.6 40 148-190 205-245 (317)
68 COG0382 UbiA 4-hydroxybenzoate 85.6 12 0.00026 36.1 11.8 37 268-304 53-90 (289)
69 PLN02809 4-hydroxybenzoate non 85.5 4.5 9.7E-05 39.4 8.7 33 272-304 55-88 (289)
70 PRK12324 phosphoribose diphosp 85.5 9.1 0.0002 37.4 10.8 46 273-318 57-106 (295)
71 PRK09573 (S)-2,3-di-O-geranylg 84.5 11 0.00023 36.3 10.8 48 270-318 45-95 (279)
72 PRK12882 ubiA prenyltransferas 83.4 6.9 0.00015 37.5 9.0 45 272-317 48-95 (276)
73 TIGR01476 chlor_syn_BchG bacte 83.1 4.1 9E-05 39.2 7.3 42 273-315 49-93 (283)
74 PRK12392 bacteriochlorophyll c 82.2 8.4 0.00018 38.3 9.2 41 278-319 66-109 (331)
75 PRK12847 ubiA 4-hydroxybenzoat 82.0 6.5 0.00014 37.9 8.2 33 272-304 55-88 (285)
76 PRK05951 ubiA prenyltransferas 81.8 30 0.00066 33.6 12.8 48 271-318 49-103 (296)
77 TIGR00751 menA 1,4-dihydroxy-2 81.6 22 0.00047 34.5 11.6 38 148-188 180-218 (284)
78 PRK12869 ubiA protoheme IX far 81.2 15 0.00031 35.5 10.3 45 270-314 44-92 (279)
79 PRK13105 ubiA prenyltransferas 81.2 23 0.00049 34.4 11.6 40 151-193 179-219 (282)
80 PRK12875 ubiA prenyltransferas 80.4 52 0.0011 31.9 13.8 38 151-191 184-222 (282)
81 PRK06080 1,4-dihydroxy-2-napht 79.8 51 0.0011 31.7 13.6 35 151-188 187-222 (293)
82 PRK12883 ubiA prenyltransferas 79.5 11 0.00023 36.2 8.7 39 275-314 50-91 (277)
83 TIGR01474 ubiA_proteo 4-hydrox 78.3 10 0.00023 36.5 8.3 33 272-304 50-83 (281)
84 PRK12888 ubiA prenyltransferas 78.0 28 0.0006 33.7 11.1 36 269-304 46-82 (284)
85 PRK12895 ubiA prenyltransferas 77.7 31 0.00068 33.5 11.4 22 151-172 178-200 (286)
86 TIGR01475 ubiA_other putative 76.8 20 0.00044 34.4 9.8 43 269-311 43-89 (282)
87 PRK12870 ubiA 4-hydroxybenzoat 76.8 12 0.00026 36.4 8.2 32 273-304 57-89 (290)
88 PLN02922 prenyltransferase 75.6 32 0.0007 33.9 11.0 36 147-185 203-239 (315)
89 PRK12873 ubiA prenyltransferas 74.6 16 0.00034 35.8 8.4 34 271-304 53-87 (294)
90 PRK12878 ubiA 4-hydroxybenzoat 74.3 34 0.00073 33.7 10.7 35 270-304 80-115 (314)
91 PRK12874 ubiA prenyltransferas 73.7 31 0.00066 33.6 10.2 23 151-173 186-209 (291)
92 PRK12871 ubiA prenyltransferas 73.1 51 0.0011 32.2 11.6 43 275-318 55-110 (297)
93 PRK04375 protoheme IX farnesyl 71.7 39 0.00084 32.8 10.4 43 273-315 55-101 (296)
94 PRK12848 ubiA 4-hydroxybenzoat 71.5 19 0.00042 34.6 8.2 43 273-315 53-99 (282)
95 TIGR01473 cyoE_ctaB protoheme 70.6 22 0.00047 34.2 8.3 47 271-317 44-94 (280)
96 PRK08238 hypothetical protein; 70.6 25 0.00054 36.8 9.3 47 272-318 236-286 (479)
97 PRK12876 ubiA prenyltransferas 69.4 25 0.00055 34.5 8.5 37 268-304 53-90 (300)
98 PRK13106 ubiA prenyltransferas 67.8 65 0.0014 31.5 11.0 35 270-304 57-92 (300)
99 PRK13362 protoheme IX farnesyl 67.0 62 0.0013 31.7 10.7 43 272-314 57-103 (306)
100 PRK12886 ubiA prenyltransferas 65.8 31 0.00067 33.5 8.3 33 272-304 52-85 (291)
101 PLN02878 homogentisate phytylt 64.4 34 0.00073 33.3 8.1 37 280-317 41-80 (280)
102 PLN02776 prenyltransferase 60.0 60 0.0013 32.5 9.2 44 269-312 36-83 (341)
103 COG2814 AraJ Arabinose efflux 47.7 3E+02 0.0066 28.1 12.1 132 170-311 71-217 (394)
104 COG4147 DhlC Predicted symport 42.5 89 0.0019 32.8 7.3 84 151-245 372-461 (529)
105 cd00867 Trans_IPPS Trans-Isopr 39.9 14 0.0003 34.0 1.1 35 273-307 157-201 (236)
106 PRK10581 geranyltranstransfera 33.4 25 0.00054 34.3 1.7 42 271-312 212-264 (299)
107 PRK11383 hypothetical protein; 31.6 3.5E+02 0.0077 23.6 9.1 18 274-291 115-132 (145)
108 TIGR03750 conj_TIGR03750 conju 24.2 3.6E+02 0.0078 22.5 6.8 34 159-194 5-38 (111)
109 PF09928 DUF2160: Predicted sm 22.6 4.1E+02 0.0088 21.3 7.6 50 278-332 21-70 (88)
110 KOG4112 Signal peptidase subun 21.4 2.9E+02 0.0062 22.5 5.4 42 184-226 33-76 (101)
111 TIGR02748 GerC3_HepT heptapren 20.5 39 0.00085 33.2 0.5 36 270-305 198-244 (319)
112 PF11990 DUF3487: Protein of u 20.5 4.4E+02 0.0095 22.3 6.8 34 159-194 8-41 (121)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.4e-47 Score=371.20 Aligned_cols=290 Identities=34% Similarity=0.567 Sum_probs=242.7
Q ss_pred CchhHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q 017235 81 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGID 160 (375)
Q Consensus 81 ~~~~~~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D 160 (375)
|+..+++..+++++|+|++|||+.+++.++++++...+....+..+++..+...+..+++..+++.+++++||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56678899999999999999999999999988655433222222233323333333445566788888899999999999
Q ss_pred ccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHH
Q 017235 161 KVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGF 240 (375)
Q Consensus 161 ~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~ 240 (375)
++|||+||+++|++|+++++.+.+++.++|+.++. ..|+..+.++.++.+++++||.||+|+||+|++++++++.+.|.
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~ 160 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV 160 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999988775 47888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHH
Q 017235 241 LLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYV 320 (375)
Q Consensus 241 ~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~ 320 (375)
.+.+|.+.......+.+..++...++++++.++|+.++++.||++|+||||+.|+||+|+++|++++.+++..++.++|+
T Consensus 161 i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~ 240 (308)
T PRK12887 161 IVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240 (308)
T ss_pred HHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence 88888877654333333345566667788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 321 AAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
..++.+......+...++..||++++.+++||...+|.+ +++++.+||||.
T Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~i 291 (308)
T PRK12887 241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQ--DKQAIAQFYQFI 291 (308)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc--cchHHHHHHHHH
Confidence 988887766666666667799999999999999999886 899999999984
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.3e-42 Score=328.80 Aligned_cols=241 Identities=35% Similarity=0.542 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Q 017235 130 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFIT-SLYCL 208 (375)
Q Consensus 130 ~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~-~l~~l 208 (375)
.+...+.+++++++++.|++|+||++|+|+||+|||+||+|||++|+++++.++..+.++|+.++.. .|+..+ .....
T Consensus 21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~-~g~~~l~~al~~ 99 (280)
T PLN02878 21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI-VGSWPLFWALFV 99 (280)
T ss_pred HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HChHHHHHHHHH
Confidence 4444556778889999999999999999999999999999999999999999999999999988754 565433 33345
Q ss_pred HHHhhhhccC--CCCCcccccchhHHHHHHHHHHHHHHHHHHHHH-hhhccCccchHHHHHHHHHHHHHHHHHHHHccCC
Q 017235 209 GLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR-AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP 285 (375)
Q Consensus 209 ~~~l~~~YS~--pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~-~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~ 285 (375)
++++++.||. ||+|+||+++++..+...+.|...++|.|...+ ..+|.+..++.++++.+++++++..+++++||++
T Consensus 100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 179 (280)
T PLN02878 100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP 179 (280)
T ss_pred HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence 6688999996 999999999998888878888877888776643 3445444555666666667888899999999999
Q ss_pred ChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH
Q 017235 286 DVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVI 365 (375)
Q Consensus 286 D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 365 (375)
|+||||+.|++|+|+++|++++.+++..++.++|+..++.+...+..+...++..||++++..+++|...+|. +++++
T Consensus 180 DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~--~sk~~ 257 (280)
T PLN02878 180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDL--SSKAA 257 (280)
T ss_pred CchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCc--ccHHH
Confidence 9999999999999999999999999999999999988888888888888889999999999999999999997 49999
Q ss_pred HHHHHHhc
Q 017235 366 LATCCTLG 373 (375)
Q Consensus 366 ~~~f~~~~ 373 (375)
+.+||||.
T Consensus 258 i~~fY~fi 265 (280)
T PLN02878 258 ITSFYMFI 265 (280)
T ss_pred HHHHHHHH
Confidence 99999984
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.3e-37 Score=295.09 Aligned_cols=261 Identities=16% Similarity=0.198 Sum_probs=200.5
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP 168 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP 168 (375)
++++|+|++||++.......+. .+++++.++.+++..++..+++ ..+..+++|+ +||+.|+|+|++|+| +||
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~---~g~~lA~~~~~~~~~l~l~~~~-~~~~rsag~~--~Ndi~Dr~iD~~~~RT~~RP 75 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFIL---AGYVIAAGHYIHPIKILLILIA-AVSARTSAMS--INRIEGLRYDMINPRKKDWA 75 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccCCCCcCCCCC
Confidence 3678999999999765444444 3444554443454444333333 2356778887 999999999999965 799
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235 169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 248 (375)
Q Consensus 169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~ 248 (375)
+|+|++|++||+.+.+++.++++.++ ...|+.++.+......+...|+ .+||++.++|+++|...|+ .++++|.
T Consensus 76 LpsG~is~~~A~~~~~~~~~~~~~~~-~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~-~~l~g~~ 149 (286)
T PRK12895 76 LVSGRIKMREAIAFTIIFIAIFEICT-FLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGL-GVLAGYL 149 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHh-HHHHHHH
Confidence 99999999999999999988887654 4578888777766666666776 7999999999999999996 6777787
Q ss_pred HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
+.++. +++....+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++.......++.
T Consensus 150 Av~g~----~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~ 225 (286)
T PRK12895 150 AVIPA----FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIY 225 (286)
T ss_pred HHcCC----CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 23323333456677899999999999999999999999999999999999988888888887777777755
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHHhc
Q 017235 329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCTLG 373 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~~f~~~~ 373 (375)
.. + ..|+++.++.+.+++|||..++++ |++++ ..|++-+
T Consensus 226 ~~-~---~~y~~~~~~~~~~l~~q~~~~~~~--~~~~~~~~~F~~N 265 (286)
T PRK12895 226 IR-T---LWYLAALIIIYTLVIYQHLIIDPR--NPINKRMSFFNAN 265 (286)
T ss_pred Hh-h---HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHc
Confidence 43 2 356688888899999999999876 55666 5666544
No 4
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.8e-36 Score=291.47 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--C
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~ 166 (375)
+.++++|++++||++..++.+...+...+++++.++.+++..++..+++. .+.++++|+ +||++|+|+|++|+| +
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~-~~~~~a~~~--~Nd~~D~~iD~~~~Rt~~ 82 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGA-LATSAAGCV--VNDLWDRDIDPQVERTRF 82 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHHhccCCCCCcccC
Confidence 45788999999999998887666555555555544456665554333332 345778887 999999999998764 6
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 246 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~ 246 (375)
||+|+|++|++|++.+..++.++++.++. ..|+.++.+...+.++.++|| ..||++.+++++.|+..|+ .++++
T Consensus 83 RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~g 156 (290)
T PRK12870 83 RPLASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAWGF-AVLIS 156 (290)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHHHh-HHHHH
Confidence 99999999999999999999988887664 468888877777788888998 5899999999999988886 46677
Q ss_pred HHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235 247 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 326 (375)
Q Consensus 247 ~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~ 326 (375)
|.+.++. .+ ...+++.+..++|+.++++++++||+|+|+++|+||+|+++|++++.++.. ++.+........+
T Consensus 157 ~~a~~g~----~~--~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~ 229 (290)
T PRK12870 157 WSAVTGH----LD--LGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILG 229 (290)
T ss_pred HHHHcCC----CC--HHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHH
Confidence 7766542 22 333456677889999999999999999999999999999999998887776 4444444444555
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235 327 IYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 374 (375)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~ 374 (375)
+....++ .|.++..+.+..+.||+..+++++++++.+.++++.+-
T Consensus 230 ~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~ 274 (290)
T PRK12870 230 VLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNV 274 (290)
T ss_pred HHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhh
Confidence 5544332 34466777788999999999888889999999988654
No 5
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-35 Score=284.20 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235 87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP- 165 (375)
Q Consensus 87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p- 165 (375)
..+.++++|+|++||++.++...+... +++++.++.+++..++..+++. .++.+++|+ +||++|+|+|++|+|
T Consensus 10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~---g~~la~~~~~~~~~l~l~~lg~-~l~~~a~~~--~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 10 NTRSKFYIILRFLRIEQTFFSLPMAYL---GAFVAIKGIPPISTLILIFLAL-FFLRTAGMT--NDNLADLEIDAKNPRT 83 (300)
T ss_pred hhHHHHHHHHHHHccccHHHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccccCCCcc
Confidence 356689999999999999877665543 3344444456665554333332 356777777 999999999999965
Q ss_pred -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
+||+|+|++|++|++.+..++.+.+++++ ...|+.+..+..++.++.+.|+ .+||++.++|+++|+..|+.+..
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~-~~ln~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~~ 158 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASA-YLVNRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAVFS 158 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHHH
Confidence 79999999999999988766555555443 4578887777777777778898 69999999999999999986444
Q ss_pred HHHHHHHhhhccCc--cchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSF--EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA 322 (375)
Q Consensus 245 g~~~a~~~~~g~~~--~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~ 322 (375)
++.+.++....+. ....+.+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..++.++.++.
T Consensus 159 -G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~ 236 (300)
T PRK13106 159 -GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLD 236 (300)
T ss_pred -HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 4555543221110 011222334456679999999999999999999999999999999 889999998988888888
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235 323 ILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERA 359 (375)
Q Consensus 323 i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 359 (375)
+..++....++ .|+++..+.+.++.||+..++++
T Consensus 237 ~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~ 270 (300)
T PRK13106 237 LLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK 270 (300)
T ss_pred HHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc
Confidence 87777665543 45677778889999999999775
No 6
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.2e-35 Score=283.21 Aligned_cols=268 Identities=21% Similarity=0.193 Sum_probs=207.9
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CC
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL 167 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~R 167 (375)
+++++|++++||+++.++.+.......+.+++.++.+++..++..+++ .+++.+++|+ +||+.|+|+|++|+| +|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g-~~l~~~a~~~--~Nd~~D~~iD~~~~RT~~R 81 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILG-GLAVSGAGCI--ANDLWDRRIDRKVERTKNR 81 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHH-HHHHHHHHHH--HHHHHHHhhccCCCcCCCC
Confidence 457899999999999988888776666655654444555544433332 3466777777 999999999999986 69
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFN---FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~---~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
|+|+|++|+++|+.+.+++.++++.+.... .|+.+..+..++++...+|| .+||++.+++++.|+..++ +++
T Consensus 82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~~a~-~~l 156 (294)
T PRK12873 82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALCWGF-AVL 156 (294)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHHHHh-HHH
Confidence 999999999999999999988888765432 36777777777777888998 6999999999888887554 677
Q ss_pred HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
++|.+.++.+ ++....+++.+..++|+.++|++++++|+|+|+++|++|+|+++|+ ++..+...++.++.+++..
T Consensus 157 ~gw~Av~g~~----~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~ 231 (294)
T PRK12873 157 IPWAAAEGSL----NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLAL 231 (294)
T ss_pred HHHHHHhCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHH
Confidence 7888776532 3333334445677899999999999999999999999999999997 4666667777888877777
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
.++..+.++ .|.++.++.+.++.|||..+++++..+++|-+.++-+
T Consensus 232 ~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n 277 (294)
T PRK12873 232 AAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQ 277 (294)
T ss_pred HHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhc
Confidence 787766553 4557777888999999999998755578887776644
No 7
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.4e-35 Score=280.67 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=193.7
Q ss_pred HHHHHHHHchhhHHHHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235 92 RDACWRFLRPHTIRGTALGSV-ALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP 168 (375)
Q Consensus 92 l~~~~~l~Rp~~~~g~~l~~~-~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP 168 (375)
+++++|++||+|.+.....+. +.+++...+ ++.+++..++..+++. .+..+++|+ +||++|+|+|++|+| +||
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFAS-DGSVHWADLLLVTVAM-VGARTFAMA--ANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHhhCCCCCCCCCCCCC
Confidence 678999999999764333222 222222222 3446665554333332 345677777 999999999999985 799
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235 169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 248 (375)
Q Consensus 169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~ 248 (375)
+|+|++|++|++.+.+.+..+++.++ ...|+.++.+..++++..+.|+ ..||++.+++++.|+..++ .++++|.
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~~-~~l~g~~ 151 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQAV-GPVGAWI 151 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHHH-HHHHHHH
Confidence 99999999999998887776666554 3468887777777777778997 7899999999999988665 4667787
Q ss_pred HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
++++. .+ +..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|++++.++...++.+.+++.+..++.
T Consensus 152 a~~g~----~~--~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~ 225 (284)
T PRK12888 152 AVTGT----WS--WPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA 225 (284)
T ss_pred HHcCC----CC--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77542 22 3444566778899999999999999999999999999999999999998888887887777776766
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHH
Q 017235 329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCT 371 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~~f~~ 371 (375)
...++ .|+++..+.+.+++|||..++++ |++.+ +.|++
T Consensus 226 ~~~~~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~ 264 (284)
T PRK12888 226 VGFGA---LWWIGLAITAGAFAYEHAIVSPT--DLSRVNRAFFT 264 (284)
T ss_pred hCCcH---HHHHHHHHHHHHHHHHHHHcCcc--CHHHHHHHHHH
Confidence 55553 34567778889999999999876 44444 35553
No 8
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=8.6e-35 Score=280.68 Aligned_cols=267 Identities=19% Similarity=0.140 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHH-HHc-CCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARA-LIE-NPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP- 165 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a-~~~-~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p- 165 (375)
+.++++|+|++|.+++.++.+..+....+. +.+ .++.+++..++..+++. .++++++|+ +||++|+|+|++|+|
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~-~~~~~a~~~--~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGA-LLLRGAGCT--INDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccccCCCCC
Confidence 357889999999999998887775433333 333 23345665444333332 355677777 999999999999874
Q ss_pred -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
+||+|+|++|++||+.+..++.++++.++. ..|+.++.+..++.++.++|| .+||++.+++++.|+..++ .++
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l 153 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GAL 153 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHH
Confidence 799999999999999999988888887654 458888888878888888998 6999999999988877665 456
Q ss_pred HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
++|.+.++.. ++. ..+.+....++|+.++++++++||+|+|+++|+||+|+++|+++..++.. ++.+++..+..
T Consensus 154 ~g~~av~g~~----~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~ 227 (289)
T PLN02809 154 LGWAAVKGSL----DPA-VVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLAL 227 (289)
T ss_pred HHHHHHhCCC----ChH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHH
Confidence 6676665422 222 22224556678999999999999999999999999999999996666664 66667777666
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
.++....++ .+.+++++.+.+++||+..+|++ ++++|.+.|+.+.|
T Consensus 228 ~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~--~~~~~~~~F~~n~~ 273 (289)
T PLN02809 228 SGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLS--SRADCNRKFVSNKW 273 (289)
T ss_pred HHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCCH
Confidence 666554432 34568888899999999999886 67788887776543
No 9
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1e-34 Score=280.13 Aligned_cols=266 Identities=20% Similarity=0.203 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-- 165 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-- 165 (375)
.+++++|++++||+++.++.+...+...+..++.++. +++..++..+++. .++++++|+ +|||+|+|+|++|+|
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~~-~l~~~a~~~--~Nd~~D~~iD~~~~Rt~ 80 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGS-VLMRSAGCI--INDIFDRKIDKHVARTK 80 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHH-HHHHHHHHH--HHhHHHhhhccCCCccc
Confidence 4568899999999998876665555445555543333 5555444333332 355677777 999999999998774
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235 166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245 (375)
Q Consensus 166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g 245 (375)
+||+++|++|++|++.+..++.++++.++. ..|+.++.+++++.++.++|| ..||++.+++++.|+..|+ .+++
T Consensus 81 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~l~ 154 (285)
T PRK12847 81 NRPLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTFNM-GILM 154 (285)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHHHH-HHHH
Confidence 799999999999999999999888887764 468888888888888889998 5999999999998888775 4666
Q ss_pred HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 325 (375)
Q Consensus 246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~ 325 (375)
+|.+.++. ++ ...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++.....+..+...++
T Consensus 155 ~~~a~~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~- 227 (285)
T PRK12847 155 AFAAVQNQ----LD--IEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL- 227 (285)
T ss_pred HHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence 77766532 22 344556777889999999999999999999999999999999999999888776555555443
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
++...... .++ .+.++....+.+++..++.+ +++.+.+.++.++|
T Consensus 228 ~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~ 272 (285)
T PRK12847 228 GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFD--NPANCMYAFKANHY 272 (285)
T ss_pred HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhHH
Confidence 33222211 122 34445566888898877654 56778888887764
No 10
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.7e-35 Score=278.99 Aligned_cols=264 Identities=20% Similarity=0.252 Sum_probs=190.5
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 170 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~ 170 (375)
.+++|++++||++...+.++...+. +++.+...++..++..+++ ..+..+++|+ +||++|+|+|++|+|+||++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~---~~a~~~~~~~~~~~l~~l~-~~l~~~~~~~--~Nd~~D~~iD~~~~~~Rpl~ 76 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGA---FIAGGILSSPSLTGLAFAA-VFLATGAGNA--INDYFDREIDRINRPDRPIP 76 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHH---HHhccccchHHHHHHHHHH-HHHHHHHHHH--HHHHhhhccccccCCCCCcC
Confidence 3689999999999987777666443 3333322333222222222 2355677777 99999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235 171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 250 (375)
Q Consensus 171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~ 250 (375)
+|++|++|++.++.++.++|++++. ..|+....+..++.++.++||. ++||++.+||+++|...|..+.+|.....
T Consensus 77 ~G~is~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~ 152 (276)
T PRK12882 77 SGAVSPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVG 152 (276)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987765 3688877777777788889985 89999999999999988887665543221
Q ss_pred HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017235 251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMP 330 (375)
Q Consensus 251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~ 330 (375)
.. .+ ...+.+.+..++|+.+++++||++|+|+|+++|+||+|+++|+|++.++...++++.........+...
T Consensus 153 -----~~-~~-~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~ 225 (276)
T PRK12882 153 -----TE-GL-LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLST 225 (276)
T ss_pred -----cc-ch-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 222345566678889999999999999999999999999999999999887776665554433222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 331 QAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
.+ ..|++..++....+++..++... +++++.+++.++++||
T Consensus 226 ~~---~~y~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~f~~~~~ 266 (276)
T PRK12882 226 FG---LWYLVLVAPADLVMLAAAYRSLK-KTDPTASQKLLKYGMF 266 (276)
T ss_pred hh---HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 22 23455555555555554443322 2367889999999886
No 11
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.2e-34 Score=278.81 Aligned_cols=247 Identities=26% Similarity=0.372 Sum_probs=185.6
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 170 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~ 170 (375)
++++|++++||++...+.++...+. .++.+..+++..++..+++ ..+..+++|+ +||++|+|+|++|+|+||++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~l~~l~-~~l~~~~~~~--iNd~~D~~iD~~~~~~Rpl~ 75 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGY---LIASNFKIDLKGIILAALV-VFLVCAGGNV--INDIYDIEIDKINKPERPIP 75 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHH---HHHccCCcchHHHHHHHHH-HHHHHHHHHH--HHhhcccccccccCCCCCcC
Confidence 3678999999999988877666443 3333333455444333333 2355677777 99999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235 171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 250 (375)
Q Consensus 171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~ 250 (375)
+|++|+++++.++.++.++++.++.. .|+.+..+++++.++.++||. ++||++.+||+++|...|..+..|. .+.
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~-l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~-~~~ 150 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIF-INIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG-LAV 150 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999877653 688888888888888899984 7999999999999999999765554 333
Q ss_pred HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017235 251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMP 330 (375)
Q Consensus 251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~ 330 (375)
++ . ...+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++.++.....++......+......
T Consensus 151 ~~------~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK09573 151 FN------V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGI 222 (279)
T ss_pred cc------c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 122334556678899999999999999999999999999999999999887776666655543322221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235 331 QAFRRNLMIPAHVILASCLLFQTWLLERA 359 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 359 (375)
.+ .+|+++..+.+..++++..+.-++
T Consensus 223 ~~---~~y~~~~~~~~~~~l~~~~~~~~~ 248 (279)
T PRK09573 223 FG---IYYLIVVIICDILFIIAMLILLKN 248 (279)
T ss_pred HH---HHHHHHHHHHhHHHHHHHHHHHcC
Confidence 22 245666767778888887766443
No 12
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-34 Score=276.55 Aligned_cols=266 Identities=18% Similarity=0.159 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH-Hc-CCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC
Q 017235 86 NKVSAFRDACWRFLRPHTIRGTALGSVALVARAL-IE-NPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN 163 (375)
Q Consensus 86 ~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~-~~-~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n 163 (375)
++.++++++|+|++||++.+.+...+..+...+. .. .++.+++..++..+++. .+..+++|+ +||++|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAA-VSARNFAMA--FNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhhhhccccCC
Confidence 4567789999999999999877766654432221 11 12345666554333332 245666666 9999999999999
Q ss_pred CC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235 164 KP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 241 (375)
Q Consensus 164 ~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~ 241 (375)
+| +||+|+|++|++|++.+.+++.++++.++. ..|+.+..+.+..++....|| .+||++.+++++.|+..|+.
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~~~~~~ 153 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGLSLGLA 153 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHHHHHHH
Confidence 85 799999999999999999888877766554 468887777666666788999 69999999999999987764
Q ss_pred HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235 242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321 (375)
Q Consensus 242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~ 321 (375)
++.+|.+.++. ++ ...+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++.++...++....+.
T Consensus 154 -~l~G~~av~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~ 226 (291)
T PRK12874 154 -PIAGVVAVLGE----IP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLF 226 (291)
T ss_pred -HHHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHH
Confidence 55567666542 22 222345567789999999999999999999999999999999999988877666655555
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 017235 322 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT 371 (375)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~ 371 (375)
....++....++ +++++..+.+..+.+|+..++.+ +++.++.|+.
T Consensus 227 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ff~ 271 (291)
T PRK12874 227 WLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKD--FKKIDKAFFT 271 (291)
T ss_pred HHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 544444333332 34566767778888998888543 3446666654
No 13
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=7.6e-35 Score=280.70 Aligned_cols=222 Identities=22% Similarity=0.245 Sum_probs=168.4
Q ss_pred HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcccc
Q 017235 93 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 171 (375)
Q Consensus 93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~s 171 (375)
++|++++||+++.....++..+.+.+- ..++. .+|...+...+....++.+++|+ +|||+|+|+|++|+|+||+++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~-~~~~~~~~~~~~ll~~~~~~~l~~~~~n~--~Nd~~D~~~D~~~~~~Rpi~~ 77 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASG-YERGFPEHWWLMLLGMLMAGPLGTGFSQS--INDYFDRDVDAINEPQRPIPS 77 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhcc-CCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhCcccCCCCCCCCCC
Confidence 468899999999888877775543220 11222 34443322111112245666776 999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 017235 172 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 251 (375)
Q Consensus 172 G~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~ 251 (375)
|++|+++++.+.+++.+++++++....++....+++++.+++++||.||+++||++++|++.++...|..+..+++.+..
T Consensus 78 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~ 157 (283)
T TIGR01476 78 GIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA 157 (283)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988888877654444435666677888999999999999999899999998877766555554331
Q ss_pred hhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 252 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 252 ~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
. +++..++.++..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++++..+.
T Consensus 158 -----~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 158 -----P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred -----C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23344445667778899999999999999999999999999999999999998877777765553
No 14
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2e-34 Score=277.71 Aligned_cols=259 Identities=16% Similarity=0.214 Sum_probs=194.2
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCcc
Q 017235 92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI 169 (375)
Q Consensus 92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RPl 169 (375)
+++|+|++||++..+..+.+.+ +++++.++.+++..++..+++. .++.+++|+ +||++|+|+|++|+ |+||+
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~---g~~la~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYA---GALLAAKGLPGLKTLILILIAA-VSARTAAMA--FNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHH---HHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHHHHHHcccCCCCccCCCCC
Confidence 6799999999998876555443 3344434456665554333332 355677777 99999999999994 58999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 249 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a 249 (375)
++|++|+++++.+.+++.+++++++ ...|+.+..++.++.++.++|+ .+||++.+++++.|...|. +++++|.+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a 149 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSAS-YFLNPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVA 149 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999887776666554 3467777777777777788998 6899999999999988776 45666777
Q ss_pred HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017235 250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM 329 (375)
Q Consensus 250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~ 329 (375)
.++.. +.....+++.+..++|+.+++++||+||+|+|+++|+||+|+++|+|++.++...+..+++....+.++..
T Consensus 150 ~~g~~----~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (282)
T TIGR01475 150 VIGTI----SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYV 225 (282)
T ss_pred HhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65422 21133344566778999999999999999999999999999999999999998888888887777666655
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHH-HHH
Q 017235 330 PQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILAT-CCT 371 (375)
Q Consensus 330 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-f~~ 371 (375)
+.++ .+.++..+.+..+.+++...+++ +++++++ |+.
T Consensus 226 ~~g~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~ 263 (282)
T TIGR01475 226 GNGY---IALLALILIGLILAYEHYIVDPG--DQSKIQRAFFY 263 (282)
T ss_pred hCcH---HHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 4443 45566667778888898877754 5566655 444
No 15
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=5.9e-34 Score=279.29 Aligned_cols=254 Identities=22% Similarity=0.270 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCC-CCcHHHHH--HHHHHHH-HHHHHhhhhhhccccccccccccC
Q 017235 88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-LIKWSLLL--KAFSGLL-ALICGNGYIVGINQIYDIGIDKVN 163 (375)
Q Consensus 88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~-~~~~~~ll--~~l~~~v-~lv~a~~~v~~iNd~~D~~~D~~n 163 (375)
..+++|+|++++||+++... ++...+ ++ ++.++ .+++..+. .....+. .+..+++++ +|||+|+|+|++|
T Consensus 8 ~~~~~k~~l~L~kP~t~l~~-~p~~~g--~~-lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~--iND~~D~~~D~~n 81 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWISV-FPCLAG--GV-MASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS--VNDYFDLELDRVN 81 (331)
T ss_pred hhHHHHHHHHHHCHHHHHHH-HHHHHH--HH-HHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhH--HhcceeecccccC
Confidence 35568899999999988733 333322 22 33221 12222211 1111111 233445566 9999999999999
Q ss_pred CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHH
Q 017235 164 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNF-------GPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT 236 (375)
Q Consensus 164 ~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~-------~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~ 236 (375)
+|+||+++|++|+++++.+.+++.+++++++.+.. ++..+..++++++++++||.||+++||+++.++..+|+
T Consensus 82 ~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl 161 (331)
T PRK12392 82 EPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF 161 (331)
T ss_pred CCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence 99999999999999999999998888887765321 12223334567788999999999999998889999998
Q ss_pred HHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHH
Q 017235 237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 316 (375)
Q Consensus 237 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l 316 (375)
..|+....+. .+.. + +.++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|++++.++....+.
T Consensus 162 ~~~~~~~~~~-~a~~---g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~ 234 (331)
T PRK12392 162 SYGFITFLSA-NALF---S---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID 234 (331)
T ss_pred HHHHHHHHHH-HHHh---c---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence 8887554433 2322 2 1234444566777899999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 017235 317 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE 357 (375)
Q Consensus 317 ~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~ 357 (375)
++.+..+..++...+++ .+....++++.++.+|....+
T Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~r 272 (331)
T PRK12392 235 LVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLYR 272 (331)
T ss_pred HHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 67666666666555443 233445566777888887654
No 16
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-34 Score=275.55 Aligned_cols=264 Identities=20% Similarity=0.206 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235 88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-- 165 (375)
Q Consensus 88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-- 165 (375)
+.+++++|+|++||++......+...+ ++++.++.+++..++..+++. .+..+++|+ +||++|+|+|++|+|
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g---~~lA~~~~~~~~~l~~~~l~~-~l~~~a~~~--~Nd~~D~~iD~~~~RT~ 77 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIG---AVLAALGLPGASQLDWILMAM-VGARTAAMG--FNRLIDAEIDARNPRTA 77 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHhhccCCCCCCCC
Confidence 456788999999999987665555433 334433445554444333332 355677777 999999999999985
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235 166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245 (375)
Q Consensus 166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g 245 (375)
+||+++|++|++|++.+...+.++++. .....|+.+..+.+++.++.+.|| .+||++.+++++.|+..++ ++++
T Consensus 78 ~RPL~sG~is~~~A~~~~~~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~-~~l~ 151 (291)
T PRK12886 78 GRAIPAGLISKGSAILFIVLSSLLMLF-AAWFLNPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLAL-APLG 151 (291)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHH-HHHH
Confidence 699999999999998886555554443 334578888777777777788999 5899999999988887554 5677
Q ss_pred HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 325 (375)
Q Consensus 246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~ 325 (375)
+|.+.++. ++ .+.+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++...+..+.+...+..
T Consensus 152 g~~a~~g~----~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~ 225 (291)
T PRK12886 152 AWIAIRGT----IE--LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFAL 225 (291)
T ss_pred HHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 88877542 22 3334566677899999999999999999999999999999999999998877777777766665
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
++....++ .|.++.++.+..+++|++..++++. ++.++++|+.+
T Consensus 226 ~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~F~~~ 269 (291)
T PRK12886 226 GISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDL-TRLDAAFFNMN 269 (291)
T ss_pred HHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHh
Confidence 55443332 4556666777888889888875421 34566766544
No 17
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.2e-33 Score=280.83 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHH------HHHHHHHHHHHHHHhhhhhhcccccccccccc
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL------LLKAFSGLLALICGNGYIVGINQIYDIGIDKV 162 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~------ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~ 162 (375)
.+.+++|++++||+++....++++.+.+ . .++ ++|.. ++..++ ...++.+++|+ +|||+|+|+|++
T Consensus 82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~---~-~g~-~~~~~~~~~~~ll~~ll-~~~L~~~~an~--iNDy~D~~iD~~ 153 (375)
T PLN00012 82 TDIWKIRLQLTKPVTWPPLVWGVLCGAA---A-SGN-FHWTLEDVAKSIVCMLM-SGPFLTGYTQT--INDWYDREIDAI 153 (375)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHH---H-cCC-CCchhhhHHHHHHHHHH-HHHHHHHHHHH--HHCeecHhhhcc
Confidence 4567899999999999888887775543 2 222 33432 111111 12345566666 999999999999
Q ss_pred CCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHH
Q 017235 163 NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT 236 (375)
Q Consensus 163 n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~------~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~ 236 (375)
|+|+||+++|++|+++++.+.+++.++++.++.+. .++..+.+++++++++++||.||+++||++++||+.+|.
T Consensus 154 ~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~ 233 (375)
T PLN00012 154 NEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGA 233 (375)
T ss_pred CCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHH
Confidence 99999999999999999987766666666555432 256667777778888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHH
Q 017235 237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 316 (375)
Q Consensus 237 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l 316 (375)
..|..+.++++ +..+ .+++..++++++.++|+.+++++||++|+|+|+++|++|+||++|++++++++..++.
T Consensus 234 ~~~~lp~~~g~-a~~g------~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 234 SYISLPWWAGQ-ALFG------TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHHHH-HHcC------CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 88876666555 3322 2334445566777899999999999999999999999999999999999998875554
Q ss_pred HHHH
Q 017235 317 LNYV 320 (375)
Q Consensus 317 ~a~~ 320 (375)
+..+
T Consensus 307 l~~l 310 (375)
T PLN00012 307 ITQL 310 (375)
T ss_pred HHHH
Confidence 4443
No 18
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.3e-34 Score=274.85 Aligned_cols=266 Identities=17% Similarity=0.167 Sum_probs=194.5
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcC------CC---CCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIEN------PN---LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDK 161 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~------~~---~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~ 161 (375)
+.+.|.|+.|.+| ++++....+++++++. .+ .++|..++...+++ ...++++|+ +||++|+|+|+
T Consensus 3 ~~~~~~~~i~~~h---t~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~Rsag~~--~Nd~~DrdiD~ 76 (300)
T PRK12876 3 RIKYFQQLINCKY---ALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAF-FCARTVGII--VNQIIDCAIDK 76 (300)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHHhcccC
Confidence 4778899999888 3455554444555542 34 56777665444333 245677777 99999999999
Q ss_pred cCCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHH
Q 017235 162 VNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRG 239 (375)
Q Consensus 162 ~n~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G 239 (375)
+|+| +||+|+|++|++||+.+.+++.++++++ ....|+.+..+..+++++.++|| ++||+++++|++.|+..+
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l-~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~ 151 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSL-CWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYY 151 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHH
Confidence 9996 7999999999999999987665555544 34579998888888888888998 699999999999998877
Q ss_pred HHHHHHHHHHHHhhhccCccchH--HHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHH
Q 017235 240 FLLNFGVYYATRAALGLSFEWNA--PVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL 317 (375)
Q Consensus 240 ~~~~~g~~~a~~~~~g~~~~~~~--~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~ 317 (375)
+ .++++|.+..+. +..+.. ..++.++..++|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.+
T Consensus 152 ~-~~l~~~~Av~~~---~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 152 L-AILMNFFAIIET---PLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred H-HHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 6 566677665431 112211 2223455667888899999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH-HHHH-HhhccCCCCHHHHHHHHHhccC
Q 017235 318 NYVAAILAAIYMPQAFRRNLMIPAHVILASCL-LFQT-WLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 318 a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l-~~~~-~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
+.+...+.++..+.++ .+++.+.++.+..+ .+|| ..++ +++++.+.+||+.+.|
T Consensus 228 ~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~F~~N~~ 283 (300)
T PRK12876 228 SAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLID--KKKSTLEQKFFLGNIY 283 (300)
T ss_pred HHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHhcCH
Confidence 8877777776655553 23555555444444 5666 5563 3467788888877654
No 19
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=6.3e-34 Score=275.11 Aligned_cols=271 Identities=23% Similarity=0.277 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC
Q 017235 85 LNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK 164 (375)
Q Consensus 85 ~~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~ 164 (375)
.++..++++.+.+++|+++++++.....+.+.+...+..+.+++..++.+.++ +.+..+++|+ +||++|+|+|++|+
T Consensus 3 ~~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~ag~~--iND~~D~eiD~~n~ 79 (289)
T COG0382 3 MMSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLA-FFLARSAGYV--INDLADREIDRINP 79 (289)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHhHH--HHHHhhhhccCCCC
Confidence 34556777888888888888877776665555555544344443333322222 2344566666 99999999999999
Q ss_pred C--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHH
Q 017235 165 P--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL 242 (375)
Q Consensus 165 p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~ 242 (375)
| +||+|+|++|+++++.+.+++.++++.+++ ..|+..+.+...+.++.+.|+ ++||++.++|+++|...|+.+
T Consensus 80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~ 154 (289)
T COG0382 80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGA 154 (289)
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHH
Confidence 9 899999999999999999999998887764 578888888888889999994 899999999999999999876
Q ss_pred HHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHH
Q 017235 243 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA 322 (375)
Q Consensus 243 ~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~ 322 (375)
..|.. +..+ +...+.+++.+..++|+.+++++||++|+|+||+.|+||+|+.+|++++..++...+ ...+..
T Consensus 155 ~~g~~-a~~~------~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~ 226 (289)
T COG0382 155 LAGAA-AVGG------SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALL 226 (289)
T ss_pred HHHHH-HHhC------ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHH
Confidence 66543 3321 123444566778889999999999999999999999999999999999999998887 333333
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 323 ILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 323 i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
...++...... ..++.++.+.+..+++|+..++.+ ++..+..+++.+|+
T Consensus 227 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 275 (289)
T COG0382 227 VLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVR--DPPACFALFDVNLL 275 (289)
T ss_pred HHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHhhH
Confidence 33443332221 256778888889999999999876 77788888887764
No 20
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=9.5e-34 Score=272.99 Aligned_cols=264 Identities=17% Similarity=0.162 Sum_probs=194.8
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CC
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL 167 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~R 167 (375)
+++++|+|++|++++.++.+...+...+..++.++.+++..++..+++. .+.++++|+ +||++|+|+|++|+| +|
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g~-~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~R 79 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLGV-FLMRAAGCV--INDYADRDFDGHVKRTKNR 79 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccCCCCCCCCCC
Confidence 4688999999999988777666544445555544445655443333332 355678887 999999999998764 69
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 247 (375)
Q Consensus 168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~ 247 (375)
|+|+|++|+++++.++.++.+++++++. ..|+.+..+..++.++.++|+ ..||++.+++++.|+..|+.+ ..+|
T Consensus 80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g~~~-~~g~ 153 (282)
T PRK12848 80 PLASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFGWGI-PMAF 153 (282)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999998887654 468888877777888888996 589999999999899888754 4566
Q ss_pred HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH
Q 017235 248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI 327 (375)
Q Consensus 248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~ 327 (375)
.+.++. .+ ...+++.+..++|+.+.++.++++|+|+|+++|+||+|+++|++++.++... +.+........++
T Consensus 154 ~a~~~~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~ 226 (282)
T PRK12848 154 AAVQGS----VP--LEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGW 226 (282)
T ss_pred HHHhCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHH
Confidence 665532 22 3344566677899999999999999999999999999999999988877643 3344333334444
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235 328 YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 374 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~ 374 (375)
....+ ..|.++..+.+..+.+|+..++++ ++++|.+.++-+.
T Consensus 227 ~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~F~~n~ 268 (282)
T PRK12848 227 LLGLG---WAYYWGLLVAAALFVYQQKLIRDR--EREACFKAFLNNN 268 (282)
T ss_pred HhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCc
Confidence 33333 245566778889999999987664 5666666655443
No 21
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=275.77 Aligned_cols=222 Identities=27% Similarity=0.382 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHH-----HHHHHHHHHHHHHHhhhhhhccccccccccccC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL-----LLKAFSGLLALICGNGYIVGINQIYDIGIDKVN 163 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~-----ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n 163 (375)
.+++++|++++||+++..++++...+.+ ... ..+|.. ++...+....++.+++|+ +|||+|+|+|++|
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~---~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~Nd~~D~~~D~~~ 96 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAV---SSG--AFGWTLENVLKLLAGMLLAGPLLCGTSQT--LNDYFDREVDAIN 96 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHH---HcC--CCCcchhHHHHHHHHHHHHHHHHHHHHHH--HhhhhccCccccC
Confidence 3457789999999998877666654332 221 223332 111111112245677777 9999999999999
Q ss_pred CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 164 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 164 ~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
+|+||+++|++|+++++.+..++.+++++++. ..|+....+++++.+++++||.||+++||++++||+++|...|..+.
T Consensus 97 ~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~ 175 (314)
T PRK07566 97 EPYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW 175 (314)
T ss_pred CCCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999998888887764 36888777777888889999999999999998899999999888776
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
++++.+.++ . .+++..++++++.++++.+++++||++|+|+|+++|+||+|+++|++++.+++..+..++++..+
T Consensus 176 ~~g~~~~~~---~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 176 WAGAAAFGA---G--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred HHHHHHhcc---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 766655432 1 22344455666777889999999999999999999999999999999999998877777766553
No 22
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=2.3e-33 Score=273.23 Aligned_cols=224 Identities=24% Similarity=0.329 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHH-----HHHHHHHHHHHHHhhhhhhccccccccccc
Q 017235 87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL-----LKAFSGLLALICGNGYIVGINQIYDIGIDK 161 (375)
Q Consensus 87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~l-----l~~l~~~v~lv~a~~~v~~iNd~~D~~~D~ 161 (375)
...+++++|++++||+++....+++..+.. .. ++ ++|... +..++....++.+++|+ +|||+|+|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~---~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~--~NDy~D~d~D~ 83 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAA---AS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQT--INDFYDRDIDA 83 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHH---Hc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhhhhc
Confidence 345667899999999999888877665432 22 22 333321 11111112345666666 99999999999
Q ss_pred cCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHH
Q 017235 162 VNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 235 (375)
Q Consensus 162 ~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~------~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg 235 (375)
.|+|+||+++|++|+++++.+++.+.+++++++.+. .++..+.+++++++++++||.||+++||++++|++.++
T Consensus 84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG 163 (306)
T ss_pred cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence 999999999999999999999988888887776532 13566777778888999999999999999988999998
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHH
Q 017235 236 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 236 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
...+..+..+++ +.++ ++++..+++++..++|+.++++.||++|+|+|+++|+||+|+++|++++++++.++.
T Consensus 164 ~~~~~~~~~~~~-a~~g------~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~ 236 (306)
T TIGR02056 164 ASYIALPWWAGH-ALFG------ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI 236 (306)
T ss_pred HHHHHHHHHHHH-HHhC------CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence 888876666655 3222 233444456777788999999999999999999999999999999999999998777
Q ss_pred HHHHHHHHH
Q 017235 316 LLNYVAAIL 324 (375)
Q Consensus 316 l~a~~~~i~ 324 (375)
..++...+.
T Consensus 237 ~~~~~~~~~ 245 (306)
T TIGR02056 237 DIFQGLIAA 245 (306)
T ss_pred HHHHHHHHH
Confidence 776655543
No 23
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=1.7e-33 Score=271.07 Aligned_cols=262 Identities=20% Similarity=0.193 Sum_probs=192.0
Q ss_pred HHHHHHHchhhHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235 93 DACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP 168 (375)
Q Consensus 93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~--~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP 168 (375)
++|.+++|++++.++.+.......+..++.. +.+++..++..+++ ..+.++++|+ +|||+|+|+|++|+| +||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVG-AILMRGAGCV--INDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH-HHHHHHHHHH--HHhHhhhcccccCCcccCCC
Confidence 5788999999888776666654444444432 33455443323222 2345677777 999999999998864 799
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235 169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 248 (375)
Q Consensus 169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~ 248 (375)
+|+|++|++|++.+..++.++|+.++. ..|+.+..+++++.++.+.|| .+||++.+++++.|+..++.+ +.+|.
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~-~~g~~ 152 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGA-LMGWA 152 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999998987764 478888888888888899998 699999999999888777644 44466
Q ss_pred HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
+.++ ..+ ...+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++.+... ++.++.....+.++.
T Consensus 153 a~~g----~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (281)
T TIGR01474 153 AVTG----DLS--TAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALAGLI 225 (281)
T ss_pred HHcC----CCc--HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 6553 222 333335566779999999999999999999999999999999988655444 334433333344443
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
...+ ..|.++..+.+..+++++..++. +++++++++++.++|
T Consensus 226 ~~~~---~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~F~~~~~ 267 (281)
T TIGR01474 226 AGLG---PVYYLGLAAAALLLIRQIATLDI--RDPENCLKLFKANNY 267 (281)
T ss_pred hCCc---HHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhH
Confidence 3323 24456677788999999998854 356778899988764
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.4e-33 Score=268.50 Aligned_cols=263 Identities=24% Similarity=0.320 Sum_probs=189.5
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 169 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl 169 (375)
+++++|++++||++..++.++...+. +++.+..+ +..++..+++ ..++.+++|+ +||++|+|+|++|+|+||+
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~---~la~~~~~-~~~~~l~~l~-~~l~~~a~~~--~Nd~~D~~~D~~~r~~Rpl 74 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGA---IIALGGLP-LDEALLGFLT-AFFASGSANA--LNDYFDYEVDRINRPDRPI 74 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHH---HHHCCCCc-hHHHHHHHHH-HHHHHHHHHH--HHhhhhHhhhhccCCCCCC
Confidence 46889999999999987777665433 34433322 2223222222 2355677777 9999999999999999999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 249 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a 249 (375)
++|++|+++++.++.++.+++++++. ..|+....+..++.+++++||. ++||+++++|++++...|..+..|...
T Consensus 75 ~~G~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~- 149 (279)
T PRK12884 75 PSGRISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIA- 149 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999998888887765 3688887777788888999984 789999889999999888655555432
Q ss_pred HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017235 250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM 329 (375)
Q Consensus 250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~ 329 (375)
.++ . ....++++...++|+.+.++.+|++|+|+|+++|+||+|+++|++++.++...++...++..+...+..
T Consensus 150 ~~~----~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 150 VGE----L---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred hCC----C---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1 113344566778999999999999999999999999999999999999988877777776555433332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--CHHHHHHHHHhcc
Q 017235 330 PQAFRRNLMIPAHVILASCLLFQTWLLERANY--TKVILATCCTLGM 374 (375)
Q Consensus 330 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~~f~~~~~ 374 (375)
..+ ..|++...+....++++++..-++++ +....++..+++|
T Consensus 223 ~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (279)
T PRK12884 223 IFN---ILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAM 266 (279)
T ss_pred Hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 23455566777788888755433322 2223444555554
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=4.4e-33 Score=270.11 Aligned_cols=267 Identities=16% Similarity=0.190 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~ 166 (375)
+.++++|+|++||++.....+++..+. +++.++.+++..+...+++ ..+.++++|+ +|||+|+|+|++|+ |+
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~---~la~~~~~~~~~~~l~~l~-~~l~~aa~~~--iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGM---LLAPPGVPPLLLLLLTLLG-IALVAGAAGA--LNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhccCCCCCccCC
Confidence 457899999999999887777666443 3443334566544433333 2356778887 99999999999998 57
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g 245 (375)
||+++|++|++|++.++.++.++|++++....|+....+..++.+ ..++||. ++||++. +|..++...|..++++
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHHHHhHHHH
Confidence 999999999999999999999889887655457766665555544 4668983 6999985 6788888888777788
Q ss_pred HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 325 (375)
Q Consensus 246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~ 325 (375)
+|.+.++. ++...+++.+..++|+.+.+..++++|+|+|+++|+||+|+++|+++++++....+++.....++.
T Consensus 157 g~~a~~g~------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~ 230 (296)
T PRK04375 157 GWAAVTGS------LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLP 230 (296)
T ss_pred HHHHhCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776532 233344567778899999999999999999999999999999999999887776655555444433
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
......++. ++..+..+.+..+.+++...+++ +++.+++.++.++|
T Consensus 231 ~~~~~~~~~--y~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~s~~ 276 (296)
T PRK04375 231 VLLGMAGLL--YLVVALLLGAWFLYYAWRLYRKD--DRKWARKLFRYSIN 276 (296)
T ss_pred HHHhccCHH--HHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHH
Confidence 332222221 22324444556666777777653 56788888887765
No 26
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.2e-32 Score=265.24 Aligned_cols=258 Identities=21% Similarity=0.189 Sum_probs=189.5
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC-----
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----- 164 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~----- 164 (375)
+++|.+++.+||++...+..++..+.+.+... .+.++|..++..+++. .++++++|+ +|||+|++.|..|+
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~-~~~f~~~~~ll~~l~~-~l~~~~~n~--~Ndy~D~~~g~D~~~rt~~ 77 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYL-FRSFDPLLGALMLLGY-FLLHASLNV--FNDYKDYVLDCDHHETTGY 77 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCccccccCC
Confidence 46788999999999998888877655444332 2346777665444332 345677777 99999976666554
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235 165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 241 (375)
Q Consensus 165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~ 241 (375)
|+||+++|++|+++++.+..++..+++.++. ...++..+.+++++.++++.||.||+++|+++ +||+.+++.+|..
T Consensus 78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~g-lGe~~v~~~~g~~ 156 (296)
T PRK05951 78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRW-LGEHLVFYAWSHM 156 (296)
T ss_pred CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCC-chHHHHHHHHHHH
Confidence 6799999999999999988887766665443 23466677777888899999999999999885 5999999999999
Q ss_pred HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235 242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321 (375)
Q Consensus 242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~ 321 (375)
+++|.++.+++.. +...+..++...+++..++..||+||+|+|+++|+||+|+++|++++ +++..+..++|+.
T Consensus 157 ~vlg~~~~~~~~~------~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~ 229 (296)
T PRK05951 157 LVMGLIYVWLGNL------SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVI 229 (296)
T ss_pred HHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHH
Confidence 9999988876422 23444567777888889999999999999999999999999999999 7666677777776
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235 322 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERA 359 (375)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 359 (375)
.+.........+...+++++.-.....+.+++...+.+
T Consensus 230 ~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~ 267 (296)
T PRK05951 230 LQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPD 267 (296)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 65444332222222234455544455556666655443
No 27
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1e-32 Score=269.26 Aligned_cols=265 Identities=17% Similarity=0.114 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHH---chhhHHHHHHHHHHHHHHHHHcCCC-----CCcHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 017235 86 NKVSAFRDACWRFL---RPHTIRGTALGSVALVARALIENPN-----LIKWSLLLKAFSGLLALICGNGYIVGINQIYDI 157 (375)
Q Consensus 86 ~~~~~~l~~~~~l~---Rp~~~~g~~l~~~~~~~~a~~~~~~-----~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~ 157 (375)
+.+..++++|+|++ ||++.....++...+ ..++... .+++..++..+++. .++++++|+ +|||+|+
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G---~~lA~~~~~~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~Dr 97 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWS---AALAAGAAADLGLLLLWHLFLFFVGA-IAMRGAGCT--YNDIVDR 97 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHH---HHHhcccccCCCCCCHHHHHHHHHHH-HHHHHHHHH--HHHHHHH
Confidence 44668899999999 555655555555433 3333321 34544433333332 355777777 9999999
Q ss_pred cccccCCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHH
Q 017235 158 GIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 235 (375)
Q Consensus 158 ~~D~~n~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg 235 (375)
|+|++|+| +||+++|++|+++++.+..++.++|+.+.. ..|+.++.++++++++.++|| .+||++.+++...|
T Consensus 98 ~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~G 172 (314)
T PRK12878 98 DIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVAAYP----FMKRITWWPQFFLG 172 (314)
T ss_pred hcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHHH
Confidence 99998875 699999999999999999988888887764 468888888888888899997 59999888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHH
Q 017235 236 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 236 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
+..++.+ +.+|++.++. +++ ..+++.+..++|+.+.+.++++||+|+|+++|+||+|+++|++++.++.....
T Consensus 173 l~~~~~~-l~g~~a~~g~----~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~ 245 (314)
T PRK12878 173 LAFSWGA-LMGWAAHFGS----LSL--AAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG 245 (314)
T ss_pred HHHHHHH-HHHHHHHhCC----Cch--HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH
Confidence 7765544 4447776542 233 33445566779999999999999999999999999999999999988875444
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235 316 LLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 374 (375)
Q Consensus 316 l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~ 374 (375)
+.. ....+.+.....++ .++++..+.+..+.+|+..++.+ +++.++++|+.+.
T Consensus 246 ~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~n~ 298 (314)
T PRK12878 246 LAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDID--DPDQCLRLFKSNR 298 (314)
T ss_pred HHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccC--ChHHHHHHHHHhH
Confidence 333 33333333333332 33455555667788998888664 4556788887654
No 28
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=3.9e-32 Score=261.43 Aligned_cols=261 Identities=17% Similarity=0.142 Sum_probs=186.0
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP 168 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RP 168 (375)
++++|+|++||++.....+++..+. +++.++.+++..++..+++ ..+.++++|+ +||++|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~l~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP 74 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGY---FLAAKHGVSWLPLIPLLIG-GTLASGGSAA--FNHGIERDIDKVMSRTSKRP 74 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHH---HHhccCCCCHHHHHHHHHH-HHHHHHHHHH--HhchHhcCCCCCCCCCCCCC
Confidence 3678999999999877666666443 3443344565544433332 2355777777 99999999999998 5799
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235 169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITS-LYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 247 (375)
Q Consensus 169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~-l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~ 247 (375)
+|+|++|++|++.+++++.++|+.++....|+.... +.+...+..+.||. ++||+++ .|..++...|..+++++|
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~-~~~~v~~~~g~~~~l~g~ 150 (279)
T PRK12869 75 TPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI---WLKPRTW-LNIVIGGFAGNAAALAGY 150 (279)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc---ccccCCh-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888988776546776543 33344456789983 7999987 577888888998999999
Q ss_pred HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH
Q 017235 248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI 327 (375)
Q Consensus 248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~ 327 (375)
.+.++. .+...+++++..++|+.++....+++|+|+|+++|+||+|+++|++++.++...+..+.....+..+.
T Consensus 151 ~a~~g~------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 224 (279)
T PRK12869 151 ASGTGS------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL 224 (279)
T ss_pred HHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887652 22344556677788999888778899999999999999999999999998887776665554443333
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHH-HHhhccCCCCHHHHHHHHHhc
Q 017235 328 YMPQAFRRNLMIPAHVILASCLLFQ-TWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~f~~~~ 373 (375)
...+ ..|.++.++.+..++++ ....+. + +++++++.++.+
T Consensus 225 -~~~g---~~y~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~f~~s 265 (279)
T PRK12869 225 -YYIG---LIGLILVAILSAALMATSIRALLN-P-TKEEAWKMFKAS 265 (279)
T ss_pred -hhcc---HHHHHHHHHHHHHHHHHHHHHhhC-C-ChHHHHHHHHHH
Confidence 2223 24555555555555544 344433 2 355666766654
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=2.4e-32 Score=262.96 Aligned_cols=264 Identities=17% Similarity=0.156 Sum_probs=192.8
Q ss_pred HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCcc
Q 017235 93 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI 169 (375)
Q Consensus 93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RPl 169 (375)
|+|+|++||++.....+++..+. +++.+.. +++..++..+++ ..++.+++|+ +|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~~l~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~Rpl 74 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGM---WLAPGGALVNPPLLLLTLLG-TTLAAASANA--FNMYIDRDIDKKMKRTRNRPL 74 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhcccCcCCCCCCCCCCCC
Confidence 46899999999987777766543 3333332 566554433333 2356777777 99999999999987 57999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 248 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~ 248 (375)
++|++|+++++.+++++.++|+.+.....|+....++.++.++ .++||. .+||++.+ +..++...|..+++++|.
T Consensus 75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 75 VTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888755545788777777777654 789984 68999876 556677788888899998
Q ss_pred HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
+.++. ++ ...+++++..++|+...+...+++|+|+|+++|+||+|+++|++++.++....++......++.++.
T Consensus 151 a~~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (280)
T TIGR01473 151 AVTGS----IS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL 224 (280)
T ss_pred HhcCC----CC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87542 22 3334456677889988887888999999999999999999999999887776655555544444444
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235 329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~ 375 (375)
...++ .++..+..+.+..+.+++...+++ ++++.+++.++.+||
T Consensus 225 ~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~f~~s~~ 268 (280)
T TIGR01473 225 GGTGW--LYLIVATLLGALFLYLAFKFYRDP-TDRKKARKLFKFSLI 268 (280)
T ss_pred hcccH--HHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence 33332 233345555667777888777654 356678888887764
No 30
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2.9e-31 Score=256.88 Aligned_cols=226 Identities=23% Similarity=0.222 Sum_probs=177.1
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccc--ccccc--CCCCC
Q 017235 92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI--GIDKV--NKPYL 167 (375)
Q Consensus 92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~--~~D~~--n~p~R 167 (375)
+++|++++||++...+.++...+.+.+. . .+.+++..++..+++. .++.+++|. +|||+|+ ++|+. ++|+|
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~-~-~~~~~~~~~ll~~l~~-~l~~~~~n~--~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAY-W-LGSFHPLLALLALLAA-LLLQIATNL--ANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH-H-cCCccHHHHHHHHHHH-HHHHHHHHH--HHhHHHhccCCCcccccCCcc
Confidence 6789999999999988888876654432 2 1345665554333332 234566666 9999999 46754 45789
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~---~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
|+++|++|+++++.++..+.+++++++.. ..++..+.+++++.++++.||.||+++|+++ +||+.+++.+|...+.
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~g-lge~~~~~~~G~~~~~ 156 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTG-LGELFVGVFFGLVIVL 156 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCC-cHHHHHHHHHHHHHHH
Confidence 99999999999998888877776655532 2466667777778889999999999999986 5999999999998888
Q ss_pred HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
+.++.+++. .+...++.+++.++|+.++++.||++|+|+|+++|+||+|+++|++++++++..+..++++..+.
T Consensus 157 ~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~ 230 (293)
T PRK06080 157 GTYYLQAGT------VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL 230 (293)
T ss_pred HHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence 888776532 23455667888889999999999999999999999999999999999999999999999987776
Q ss_pred HHHhc
Q 017235 325 AAIYM 329 (375)
Q Consensus 325 ~~~~~ 329 (375)
..+..
T Consensus 231 ~~~~~ 235 (293)
T PRK06080 231 LALLG 235 (293)
T ss_pred HHHHh
Confidence 55443
No 31
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=2.9e-31 Score=255.00 Aligned_cols=208 Identities=22% Similarity=0.304 Sum_probs=155.8
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 170 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~ 170 (375)
++|+|++++||++.....++...+ ++++.++.+++..++..+++ ..+.++++|+ +||++|+|+|++|+|+||++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G---~~la~~~~~~~~~~~l~~~~-~~~~~~a~~~--~Nd~~D~~~D~~n~~~Rpl~ 75 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILG---SLVALGGIPPIKTLILIFLV-VYLGCSGGNT--INDYFDYEIDKINRPNRPLP 75 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHH---HHHHcCCCCcHHHHHHHHHH-HHHHHHHHhH--HHhhhhHhccccCCCCCCCC
Confidence 367899999999988666665533 33443333444333222222 2344566777 99999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235 171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 250 (375)
Q Consensus 171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~ 250 (375)
+|++|+++++.+..++.++|+.++. ..|+..+.+.+++.+++++|+. ++||++.+||+++|...|..+..|.. +.
T Consensus 76 sG~is~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~-a~ 150 (277)
T PRK12883 76 RGAMSRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAI-AV 150 (277)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999988888887664 4788887777778888999984 78999888999999999987655543 22
Q ss_pred HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHH
Q 017235 251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL 317 (375)
Q Consensus 251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~ 317 (375)
+ .+++. .+ .....+++..++++.||++|+|+|+++|+||+|+++|+++++++...+..+
T Consensus 151 -~----~~~~~--~~-~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~ 209 (277)
T PRK12883 151 -G----RIGLA--GY-LAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL 209 (277)
T ss_pred -c----cccHH--HH-HHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence 1 12222 12 223356777889999999999999999999999999999999877655433
No 32
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=8.9e-31 Score=255.92 Aligned_cols=231 Identities=15% Similarity=0.176 Sum_probs=179.7
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC----CCC
Q 017235 92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----PYL 167 (375)
Q Consensus 92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~----p~R 167 (375)
+|.|++.+||++...+.+++..+.+.+... .+.++|..++..+++. .++++++|+ +|||+|++.|..++ ++|
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~-~~~~~~~~~ll~ll~~-~~~~~~~N~--~NDy~D~~~g~D~~~~~~~~~ 78 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYV-AKIFDWLLFLAFMVAM-LAFDIATTA--INNYMDFKKALDTADYVGIGN 78 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCCcccccCCcc
Confidence 678999999999998888887655444322 3346776554333332 235667776 99999998776664 568
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
++++|.+|+|+++..+..+..++++++. +..++..+.+++++.+.++.||.||+++||++ +||+.+++.+|+.++.
T Consensus 79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~ 157 (317)
T PRK13387 79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFL 157 (317)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHH
Confidence 9999999999999988888877776543 34677788888899999999999999999998 6999999999999999
Q ss_pred HHHHHHHhhhccC----------ccch----HHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHH
Q 017235 245 GVYYATRAALGLS----------FEWN----APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 310 (375)
Q Consensus 245 g~~~a~~~~~g~~----------~~~~----~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l 310 (375)
|+++.+++..+.. ..++ ...++.+++..+.+..+++.||++|+|+|+++|+||+|+++|+|++.++
T Consensus 158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l 237 (317)
T PRK13387 158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence 9988876432100 0000 0122367777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017235 311 GSGLLLLNYVAAILAAI 327 (375)
Q Consensus 311 ~~~l~l~a~~~~i~~~~ 327 (375)
+.++..++|+..+....
T Consensus 238 ~~~l~~~a~l~~~~~v~ 254 (317)
T PRK13387 238 FAILFYASYLAIAVIVL 254 (317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987765543
No 33
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=7.1e-31 Score=255.34 Aligned_cols=268 Identities=16% Similarity=0.141 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235 87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP- 165 (375)
Q Consensus 87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p- 165 (375)
..++.+++|++++||++...+.+++..+.+ ++..+.+++..++..+++ .+++++++|+ +||++|+|+|++|+|
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~---la~~~~~~~~~~~~~~lg-~~l~~aaa~~--~Nd~~D~~iD~~~~Rt 81 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGFF---LASKGHVDPVLMLAAVIG-LSLVVASGCA--LNNCIDRDIDAKMQRT 81 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HHccCCCCHHHHHHHHHH-HHHHHHHHHH--HhChHHhCcCCCCCCC
Confidence 345678899999999999988887765543 333334565544333322 3466778888 999999999998764
Q ss_pred -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
+||+|+|++|+++|+.+++++.++|+.++....|+....+..++.+ ..++||. ++||++.+++++.|+ .|..++
T Consensus 82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~-~ga~p~ 157 (306)
T PRK13362 82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSL-SGAMPP 157 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHH-HHHHHH
Confidence 7999999999999999999999889876655567776655555443 4679983 799999988775555 466678
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
+++|.+.++. ++ ...+++....++|+.+.+...+++|+|||+++|+||+|+++|++++++......++.....+
T Consensus 158 l~G~~a~~g~----~~--~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~ 231 (306)
T PRK13362 158 VVGYCAVTGQ----FD--AGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTA 231 (306)
T ss_pred HHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHH
Confidence 8888877542 22 34455677788999999999999999999999999999999999888755544333333222
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHhc
Q 017235 324 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERAN-YTKVILATCCTLG 373 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~~f~~~~ 373 (375)
+.......+ ..|....+++...+++.+.+.-+++ ++++..++.|+++
T Consensus 232 l~~~~g~~g---~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S 279 (306)
T PRK13362 232 LLPLAGYTG---IGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFS 279 (306)
T ss_pred HHHHHcccc---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 221211122 2345555566667777776654332 4555566777665
No 34
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=4.1e-31 Score=253.23 Aligned_cols=217 Identities=20% Similarity=0.092 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKW--SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~--~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~ 166 (375)
...++.+++.+||.+++.+..+...+. ..+ ++.++| ..+ +.++.+++..+..+|++||++|+|+|++|+|+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~---~~~-g~~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGV---WLT-GHLYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHH---HHh-cCcccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 455667899999999998887777554 233 334666 322 22334455667778889999999999999999
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLL---IVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~---l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
||+++|++|+++++.+...+.++++. ......++..+.+..++.++++.||.||+|+|++|++++++. ...|. +
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~--p 158 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYAL--P 158 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHH--H
Confidence 99999999999998876555444322 122356788777777888999999999999999999998886 44455 3
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
++.+.+.. |.. ..+.. .+..++|..++|++++++|+|+||+.|+||+|+++|+|++.+++..+.+++.+...
T Consensus 159 ~~~~~~~~---g~~--~~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~ 230 (292)
T PRK13595 159 LALPALAL---GAP--VPWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW 230 (292)
T ss_pred HHHHHHHc---CCc--chHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 33333332 211 11121 23445888999999999999999999999999999999999999888776655544
No 35
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=1.1e-28 Score=239.43 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccCCCC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPY 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n~p~ 166 (375)
.++++.|++.+||+++..++.++..+.+.+.. ..+.++|...+..+++. .+++++.|. +|||+|++ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~-~~~~f~~~~~ll~ll~~-~l~q~~~N~--~NDy~D~~~G~D~~-~~~ 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALG-ETGVFRLDQFITFLLAA-ILILAWENL--SNDVFDADTGIDKN-KFH 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHH-HHHHHHHHH--HHHHHHHhccCCcc-ccc
Confidence 45678899999999999888888766544433 23357777665443332 244566666 99999987 6763 222
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
...++..+++++...+..+..++++++. +..++..+.++.++++++++||.||+++|+++ +||+.+++.+|..++
T Consensus 84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~g-LGE~~v~l~~G~l~v 161 (304)
T PRK07419 84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQG-LGEPLCFLAFGPLAV 161 (304)
T ss_pred -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCC-chHHHHHHHHHHHHH
Confidence 3445555789988888777776665543 24577778888889999999999999999998 599999999999999
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
.|.++.+++ .++...+..++...+.+.+++..||++|+|+|+++|+||+|+++|++++++++..+...+|+..+
T Consensus 162 ~g~~yv~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i 235 (304)
T PRK07419 162 AAALYSQTP------SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALEL 235 (304)
T ss_pred HHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHH
Confidence 999988764 23344456777788889999999999999999999999999999999999999999999998877
Q ss_pred HHHHh
Q 017235 324 LAAIY 328 (375)
Q Consensus 324 ~~~~~ 328 (375)
.....
T Consensus 236 ~~v~~ 240 (304)
T PRK07419 236 LPVLL 240 (304)
T ss_pred HHHHH
Confidence 65543
No 36
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=1.8e-28 Score=236.13 Aligned_cols=216 Identities=19% Similarity=0.135 Sum_probs=168.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccC--CCCCccccCcCC
Q 017235 100 RPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVN--KPYLPIAAGDLS 175 (375)
Q Consensus 100 Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n--~p~RPl~sG~ls 175 (375)
||++...++.++..+.+.+.. .+ .++|..++..+++. .++++++|. +|||+|++ .|+.+ .|+|++++|.++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~-~~-~f~~~~~ll~~~~~-~~~q~~~N~--~NDy~D~~~G~D~~~~~~~~r~i~~g~is 75 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAW-LH-AFVWLVALLALATA-VLLQILSNY--ANDYGDGIKGSDTDDRIGPLRGVQKGLIT 75 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHH-cC-CccHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCChhhccCCcchhcCCCCC
Confidence 899998888888766554432 23 57777665444332 245666676 99999985 36533 468999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hHHH------HHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235 176 VQSAWFLVIFFAVTGLLIVAF---NFGP------FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 246 (375)
Q Consensus 176 ~~~a~~~~~~l~i~gl~l~~~---~~~~------~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~ 246 (375)
++++...++++++++++++.+ ..++ ..+.+++++++.++.||.||+++|+++ +||+.+++.+|..+++|+
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~g-LGE~~v~i~~G~l~v~g~ 154 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAG-LGDISVLVFFGPLAVLGT 154 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCc-hHHHHHHHHHHHHHHHHH
Confidence 999998888877766655532 2344 345667788889999999999999997 599999999999999999
Q ss_pred HHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235 247 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 326 (375)
Q Consensus 247 ~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~ 326 (375)
|+.+++. +++..++.++...+.+.+++..||++|+|+|+++|+||+|+++|+|++++++..+...+|+..+...
T Consensus 155 ~yvq~~~------~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~ 228 (284)
T TIGR00751 155 QYLQAHR------VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFM 228 (284)
T ss_pred HHHhcCC------CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 9887642 3344455667777888999999999999999999999999999999999999999888887776544
Q ss_pred H
Q 017235 327 I 327 (375)
Q Consensus 327 ~ 327 (375)
+
T Consensus 229 ~ 229 (284)
T TIGR00751 229 L 229 (284)
T ss_pred H
Confidence 3
No 37
>PLN02922 prenyltransferase
Probab=99.97 E-value=7.3e-28 Score=234.93 Aligned_cols=232 Identities=17% Similarity=0.169 Sum_probs=174.5
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccCCCCC
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPYL 167 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n~p~R 167 (375)
.+++.|++.+||++...+++++..+.+.+.. ..+.++|...+..+++.+ ++.++.|. +|||+|++ .|+.++..+
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~-~~g~f~~~~~ll~ll~~~-l~q~~~N~--~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYL-QTGLFDARRYGTLLLSSV-LVITWLNL--SNDAYDADTGVDKNKKESV 88 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHH-HHHHHHHH--HhhhhHhccCcCcccCCCC
Confidence 3467789999999999888888866554433 224578877654443332 44566666 99999986 576443221
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFN----FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~----~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
.-..| |+++++...+.+.++++...... .++..+.+++++++.+++||.||+++||+++ ||+.+++.+|..++
T Consensus 89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i~fG~l~v 165 (315)
T PLN02922 89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFAAFGPLAT 165 (315)
T ss_pred CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHHHHHHHHH
Confidence 22233 89999888777776665322221 3577778888999999999999999999975 99999999999999
Q ss_pred HHHHHHHHhhhcc-Cc---cchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGL-SF---EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNY 319 (375)
Q Consensus 244 ~g~~~a~~~~~g~-~~---~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~ 319 (375)
.|.|+++++..+. .+ .+++..++.+++..+++.+++.+||++|+|+|+++|+||+|+++|++++++++.++...+|
T Consensus 166 ~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 9988887642210 11 2345556688888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 017235 320 VAAILAAIY 328 (375)
Q Consensus 320 ~~~i~~~~~ 328 (375)
+..+...+.
T Consensus 246 ~~~i~~v~~ 254 (315)
T PLN02922 246 SLLAALGLL 254 (315)
T ss_pred HHHHHHHHH
Confidence 877755443
No 38
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=1.4e-27 Score=227.98 Aligned_cols=227 Identities=20% Similarity=0.211 Sum_probs=175.5
Q ss_pred HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--cccc----CC
Q 017235 91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKV----NK 164 (375)
Q Consensus 91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~----n~ 164 (375)
+.+.|+++.|||++...+++++.+.+.+....+ .++|...+..+++.+ ++....|. +|||+|++ .|.. .+
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~-~f~~~~~ll~Li~~~-~iq~~vN~--~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGK-SFNLLVALLALIAAI-LLQILVNL--ANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHH-HHHHHHHH--HHhhhhhhcCCCCCCCcccc
Confidence 447899999999999999999877655544432 355655544443332 34556565 99999986 4543 12
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235 165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 241 (375)
Q Consensus 165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~ 241 (375)
.++-+...+++++..+.+.+.+...+.+++. ...+|..+.+++++.+.++.|+.+|++++|.|+ ||+.+++++|..
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~~vffG~l 161 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFVGVFFGPL 161 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHHHHHHHHH
Confidence 2456777788888887777666655544442 245677788888999999999999999999974 999999999999
Q ss_pred HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235 242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321 (375)
Q Consensus 242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~ 321 (375)
.+.|+|+.+++. +++..+..+++..+.+..++..||+||+|+|+|+|++|+||++|+++++.+...++..+|++
T Consensus 162 ~v~g~~yiqt~~------~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~ 235 (303)
T COG1575 162 IVLGAYYIQTGR------LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA 235 (303)
T ss_pred HHHHHHHHhccc------chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence 999999988642 33445667888888899999999999999999999999999999999999999999999888
Q ss_pred HHHHHHh
Q 017235 322 AILAAIY 328 (375)
Q Consensus 322 ~i~~~~~ 328 (375)
.++....
T Consensus 236 ~~~~~i~ 242 (303)
T COG1575 236 IVIFVIL 242 (303)
T ss_pred HHHHHHH
Confidence 7754433
No 39
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=2.2e-27 Score=228.76 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=168.5
Q ss_pred HHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccc--cccCCCCCccccC
Q 017235 95 CWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGI--DKVNKPYLPIAAG 172 (375)
Q Consensus 95 ~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~--D~~n~p~RPl~sG 172 (375)
|++.+||++...+++++..+.+.+... .+.++|..++..+++.+ ++++++|. +|||+|++. |+.+. ....++
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~-~~~f~~~~~ll~li~~l-~~q~~~N~--~Ndy~D~~~G~D~~~~--~~~~~~ 75 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQ-GGVFHLDRFALFLIAAI-LILAWINL--TNDVFDSDTGIDRFKL--HSIVNL 75 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHH-HHHHHHHH--HHhHHHHhcCCCcccc--CCcccc
Confidence 578899999998888887665544332 23577776654433322 34566666 999999874 76432 122233
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235 173 DLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 249 (375)
Q Consensus 173 ~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a 249 (375)
..+++++.....++..++++++. ...++..+.++.++++.++.||.||+++|++++ ||+++++.+|..++.|+++.
T Consensus 76 ~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv 154 (285)
T TIGR02235 76 TGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIAAALYA 154 (285)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHHHHHHH
Confidence 34578887777776666665443 245677777888899999999999999999985 99999999999999999988
Q ss_pred HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
+++ .+++..++.+++..+.+.++...||++|+|+|+++|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus 155 qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 155 QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 2334455677888899999999999999999999999999999999999999999999999877655443
No 40
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=3.7e-28 Score=234.04 Aligned_cols=252 Identities=22% Similarity=0.234 Sum_probs=168.0
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 169 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl 169 (375)
+.+++++++.|..+......+.......... .++......+++ ..++.+++|+ +||++|+|+|++|+|+||.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~--~N~~~D~~~D~~n~~~R~~ 73 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL-----LGLPISWLLLLI-TFLIAAAVYI--INYLTDLEEDIINKPERVV 73 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH-----HcChhHHHHHHH-HHHHHHHHHH--hhhhcCCchhhcCCCchHH
Confidence 4568899999999976544443321111001 111111112222 2355667777 9999999999999999998
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCC-CcccccchhHHHHHHHHHHHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPF-RMKRFAVAAFLIIATVRGFLLNFGVYY 248 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl-~lKr~~~~g~l~vg~~~G~~~~~g~~~ 248 (375)
++++...+.++.+..+...+++.+.....|+..+.++.++.+++++||.||+ ++||.|.+||+++|..+|..+.+++++
T Consensus 74 ~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~ 153 (285)
T PRK12872 74 FSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVY 153 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 8544333333333333333333332223478777777888888999999876 589999999999999999988777766
Q ss_pred HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328 (375)
Q Consensus 249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~ 328 (375)
..++ .++...+..+++.+++..++++++|++|+|+|+++|+||+|+++|+++++++...+.++.++..+...+.
T Consensus 154 ~~~~------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~ 227 (285)
T PRK12872 154 YYQL------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYT 227 (285)
T ss_pred hccc------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1233444456677788889999999999999999999999999999999999999988888777655443
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017235 329 MPQAFRRNLMIPAHVILASCLLFQTWLLER 358 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 358 (375)
....+ .++....+....+.+++...+.
T Consensus 228 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 254 (285)
T PRK12872 228 GLLPL---LLLVLLLLLAYVLYYIIKLFAA 254 (285)
T ss_pred hHhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 22221 2222333334455555555543
No 41
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.3e-27 Score=229.55 Aligned_cols=218 Identities=21% Similarity=0.194 Sum_probs=155.8
Q ss_pred HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-HHhhhhhhccccccccccccCCCCCcccc
Q 017235 93 DACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALI-CGNGYIVGINQIYDIGIDKVNKPYLPIAA 171 (375)
Q Consensus 93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv-~a~~~v~~iNd~~D~~~D~~n~p~RPl~s 171 (375)
+.+++++||.+++.+.++... +++++ ++.++|. ++ +..+++. ..+...|++|||+|+|.|+.|+|++.. .
T Consensus 2 ~~~~~~~rP~~wi~~a~pf~~---g~~la-~~~~~~~-~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 2 RQLLLSSRPISWINTAYPFAA---AYLLA-GGEIDWL-FV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred hhHHHhcccHHHhccHHHHHH---HHHHH-CCCCChH-HH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 568999999999988888774 33444 3456663 22 2223322 233333468999999999999875432 5
Q ss_pred CcCCHHHHHHHHHHHHHHHHH---HH-HHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235 172 GDLSVQSAWFLVIFFAVTGLL---IV-AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 247 (375)
Q Consensus 172 G~ls~~~a~~~~~~l~i~gl~---l~-~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~ 247 (375)
|.++++|+......+.+++.. +. ....++.++.++.++++.++.||.||+|+|++++.+++..+........+|.+
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~ 152 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLV 152 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 889999874433333322222 11 22336777778888899999999999999999988776554444333666665
Q ss_pred HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235 248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 326 (375)
Q Consensus 248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~ 326 (375)
+. ++ . +++..++.+..+++|+.+++++||+||+|+||++|+||+|+++|+|++.+++.+++.+++++.+..+
T Consensus 153 ~~-~~----~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 153 LA-GA----P--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred Hh-hc----c--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 21 2 2334455677778999999999999999999999999999999999999999999999887776433
No 42
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=2.7e-27 Score=229.37 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=162.6
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC------
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN------ 163 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n------ 163 (375)
+++++|++++||++......++..+.+.+.. .++.+++..++...+ ..+++.+++|+ +||++|+|+|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~-~~g~~~~~~~~l~~l-~~~l~~~ag~~--iND~~D~~~D~~~v~rtm~ 78 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFA-NYGGFSWELTIKAAL-IGLFGFEAGFV--LNDYVDRKRDRLDVENTLT 78 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHH-HHHHHHHHHHH--HhhHHHHhcCcchHhhhhh
Confidence 4688999999999886555554433322211 223456654432222 22344566776 9999999999875
Q ss_pred ---C--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHhhhhccCCCCCcccccc--hhHHH
Q 017235 164 ---K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG---PFITSLYCLGLFLGTIYSVPPFRMKRFAV--AAFLI 233 (375)
Q Consensus 164 ---~--p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~---~~~~~l~~l~~~l~~~YS~pPl~lKr~~~--~g~l~ 233 (375)
+ ++||+++|++|+++++.+.+++.++|+.++....+ ...+.+++.+.++++.|+ ..||... .+. .
T Consensus 79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~----~~kr~~~~p~~~-l 153 (297)
T PRK12871 79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQ----VKKRNQKYPVAQ-L 153 (297)
T ss_pred ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccccccHHH-H
Confidence 3 37999999999999999999998888877643222 234445556667788897 2333211 122 2
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHH
Q 017235 234 IA-TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGS 312 (375)
Q Consensus 234 vg-~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~ 312 (375)
+| ...++ +++++|. .++ . .+...+++.++.++|+.+++++||++|+|+|+++|+||+|+++|+++++++..
T Consensus 154 ~G~~~~~~-~~~~g~~-~~g----~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~ 225 (297)
T PRK12871 154 LGRTDFTL-FPAAGYL-CYG----Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVT 225 (297)
T ss_pred HHHHHHHH-HHHHHHH-HhC----C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHH
Confidence 33 33343 4555553 232 2 22344456677889999999999999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Q 017235 313 GLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILA 367 (375)
Q Consensus 313 ~l~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 367 (375)
.+..+.+...+ ++....++ ..+.....+.+.++.+|.+..+.+ +++.|-
T Consensus 226 ~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 274 (297)
T PRK12871 226 GFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEK--SQDAGM 274 (297)
T ss_pred HHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 55555443332 22222222 122333355667788888877554 555553
No 43
>PLN02776 prenyltransferase
Probab=99.96 E-value=8.9e-27 Score=227.96 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=180.6
Q ss_pred HHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCccccCcCC
Q 017235 98 FLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLPIAAGDLS 175 (375)
Q Consensus 98 l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RPl~sG~ls 175 (375)
++||+.....+++..++. +++.++.+++..++..+++ ..+..+++|+ +||++|+|+|++|+| +||+|+|++|
T Consensus 1 L~Kpri~~lv~~ta~~G~---~lA~~~~~~~~~l~~~~lg-~~l~~aaa~~--~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSGAGF---VLGSGEAIDLPGLGWTCAG-TMLCAASANT--LNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHHHHH---HHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 468888777777666443 4444444566555434333 2456677777 999999999999875 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017235 176 VQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL 254 (375)
Q Consensus 176 ~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~~~~ 254 (375)
+++|+.+++++.++|+.+.....|+.+..+..+++++ ...|| .+||++.+ |.++|.+.|..+++++|.+.++.
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avtg~- 148 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWAAASGQ- 148 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999998888665556788888777766555 56899 69999976 57999999988999999988753
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeee--chhHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 017235 255 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKL--GVKNIAFLGSGLLLLNYVAAILAAIYMPQA 332 (375)
Q Consensus 255 g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~l--G~~~a~~l~~~l~l~a~~~~i~~~~~~~~~ 332 (375)
++ +..+++.+..++|+........+.|.|||+++|++++|+.- |+++++.+....+.+..+.++...+... +
T Consensus 149 ---~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~-~ 222 (341)
T PLN02776 149 ---LD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT-S 222 (341)
T ss_pred ---CC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Confidence 23 33345667778999988888888999999999999999976 5666666665555444433332222211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 333 FRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 333 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
+.+++.+.++.+..+.+++...+.+ |++..++.|.++
T Consensus 223 --~~~~~~a~~l~~~~l~~~~~~~~~~--~~~~ar~~F~~S 259 (341)
T PLN02776 223 --SPFALEAALLTAYLAASAASFYREP--TNANARKMFHGS 259 (341)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 1245566666667777788777543 344555555543
No 44
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-27 Score=226.31 Aligned_cols=266 Identities=18% Similarity=0.187 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235 88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-- 165 (375)
Q Consensus 88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-- 165 (375)
-+.++|+|++++||+...+..++..++. +++.++..++..++..+++ .++..+++++ +|+++|+|+|++++|
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~---~lA~~~~~~~~l~~~~~~g-~~L~a~~a~a--~N~~~DrDID~~M~RT~ 87 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGM---LLAPRGSINPLLLLLTLLG-GALGAGGAGA--FNMYIDRDIDALMERTR 87 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHH---HHcccccccHHHHHHHHHH-HHHHHHHHHH--HhhhhhhhHHHhhhhcc
Confidence 4678999999999999988888777544 4554344566655544433 3455666666 999999999999987
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
+||+++|+++++|++.++.++.++|+.+..+..|+....+++++++. .++||. .+||++. -|+++|...|..+++
T Consensus 88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~-~NiviGg~aGa~Ppl 163 (304)
T COG0109 88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTP-QNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcc-cceeeeecccccccc
Confidence 69999999999999999999999999887667899888777777654 569995 8999987 489999999999999
Q ss_pred HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
++|.+.++.. ++.... +...+++|+...-..=.+.-+||.+++|+.++|+.-|++.+++......++.....+.
T Consensus 164 iGwaAvtg~~----~~~a~~--Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~ 237 (304)
T COG0109 164 IGWAAVTGSI----SLGAIL--LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL 237 (304)
T ss_pred ceeeeeeCCC----CchHHH--HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887633 333333 3344455554433333444566779999999999999998877554333222222221
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
..+ .+....+|.+..+++++.+++..++...++ +++..++-|+++
T Consensus 238 ~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~-~~~~A~klF~~S 282 (304)
T COG0109 238 LAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKD-DRKWARKLFKYS 282 (304)
T ss_pred HHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHH
Confidence 111 111223567777788888888888886664 555555555543
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=4e-26 Score=219.56 Aligned_cols=223 Identities=22% Similarity=0.168 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCC
Q 017235 88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYL 167 (375)
Q Consensus 88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~R 167 (375)
..++++.++++.||+++..+..+++.+.+.+.-..+...++..+ .++.. .++.++.+++++||++|+|+|+.|+|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 35678889999999999988888876554331111122333211 22222 2244556667799999999999998765
Q ss_pred ccccCcCC--HHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235 168 PIAAGDLS--VQSAWFL-VIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244 (375)
Q Consensus 168 Pl~sG~ls--~~~a~~~-~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~ 244 (375)
. .+.+. .+.+... ......+++.+.. ..++....+.+..++..+.||.||+|+|+++..+..+.|.. ..+..
T Consensus 81 ~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~-~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~--~~~~~ 155 (282)
T PRK12875 81 R--EREVRYRGDRRVLVAVALSGALALAFLL-VLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY--ILPGV 155 (282)
T ss_pred C--CCCccHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHH--HHHHH
Confidence 4 11122 1211111 1112222332222 22444333334557788999999999999998654433332 34556
Q ss_pred HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324 (375)
Q Consensus 245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~ 324 (375)
++|.++++. .++..+++ ..++|+.+++++||+||+|+|+++|+||+|+++|++++++++.++++++......
T Consensus 156 ~~y~~~tg~------~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~ 227 (282)
T PRK12875 156 AAYALVSGS------LPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAA 227 (282)
T ss_pred HHHHHHcCC------CcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHH
Confidence 777766542 22333333 3468999999999999999999999999999999999999988888877766655
Q ss_pred HH
Q 017235 325 AA 326 (375)
Q Consensus 325 ~~ 326 (375)
.+
T Consensus 228 ~~ 229 (282)
T PRK12875 228 VD 229 (282)
T ss_pred HH
Confidence 44
No 46
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=1.2e-25 Score=216.62 Aligned_cols=214 Identities=21% Similarity=0.219 Sum_probs=147.0
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235 90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 169 (375)
Q Consensus 90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl 169 (375)
...++.+++.+-...+ .+++......+..-.+..+++...+ ..+++..++|+ +||++|+|+|++|+|+||.
T Consensus 25 ~~~~~~~~~~~ss~~~--a~~a~~~~~~a~lL~g~~~~~~~~~-----~~~L~~~s~~~--iNd~~D~eiD~IN~P~r~~ 95 (307)
T PRK13591 25 KFLNATFELLNSSTLV--AFSGALRIHIAFLLLGLQSSILTCI-----AGGLIIYSVYT--LDRALDSEEDAVNRSELIG 95 (307)
T ss_pred HHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHhCCCcchHHHH-----HHHHHHHHHHH--HhhhccchhhhccCccccc
Confidence 3455566775444432 3333322222222223335555332 23466778888 9999999999999999998
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCC----C--CCcccccchhHHHHHHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP----P--FRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~p----P--l~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
+ +++.++.+..+..++|+.+++ ..|+.. +++++.+.+++||.+ | +++|+++.+||+++++.+|....
T Consensus 96 ~----s~~~a~~ls~la~llGl~La~-~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~ 168 (307)
T PRK13591 96 S----NKKIGLLVSLLAFLLGTYILA-MDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIA 168 (307)
T ss_pred c----CHHHHHHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHH
Confidence 6 788888888888888887764 456543 456777889999975 4 48899999999999999998543
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
.+. ... .+ .+ .+...+.++.....++++++||++|+|+|+++|++|+|+++|+++++++...+.+++++..+
T Consensus 169 g~~---g~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li 240 (307)
T PRK13591 169 GIA---GSY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLG 240 (307)
T ss_pred HHH---Hhh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 221 110 00 11 11111222222334667789999999999999999999999999999999999988888776
Q ss_pred HHHH
Q 017235 324 LAAI 327 (375)
Q Consensus 324 ~~~~ 327 (375)
...+
T Consensus 241 ~~~~ 244 (307)
T PRK13591 241 IALI 244 (307)
T ss_pred HHHH
Confidence 5544
No 47
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.95 E-value=9.3e-28 Score=222.62 Aligned_cols=264 Identities=20% Similarity=0.152 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHH-HHHHHHHHcCCCC-CcHHHHHHHHHHHHH-HHHHhhhhhhccccccccccccCCC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSV-ALVARALIENPNL-IKWSLLLKAFSGLLA-LICGNGYIVGINQIYDIGIDKVNKP 165 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~-~~~~~a~~~~~~~-~~~~~ll~~l~~~v~-lv~a~~~v~~iNd~~D~~~D~~n~p 165 (375)
+.+++.|.|++|.+.++||.+-.. +.|..++.+..+. ++...+ .+++..+ ++.++||+ |||..|+|+|++.+|
T Consensus 61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL--~LFG~GAllMRgAGCt--INDlwDkdlD~KVeR 136 (353)
T KOG1381|consen 61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKML--ALFGVGALLMRGAGCT--INDLWDKDLDAKVER 136 (353)
T ss_pred CccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHH--HHhcccHHHhccCCce--ehhhhhhhhhhhHhh
Confidence 344999999999999999887655 5555554444443 333322 3455444 35689998 999999999999987
Q ss_pred --CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235 166 --YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 243 (375)
Q Consensus 166 --~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~ 243 (375)
.||+++|++|+++|..+..+...+|+.+. .++|+..+.++..++.+.+.|+ -+||++.+++++.|..+++-..
T Consensus 137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgltfnwGAl 211 (353)
T KOG1381|consen 137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALGASSLALVITYP----LMKRFTYWPQLVLGLTFNWGAL 211 (353)
T ss_pred hcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhcccccccEEEee----hhhhcchhHHHHHhhhcchhhh
Confidence 59999999999999998888888787664 4689999888888888889998 7999999999887776655433
Q ss_pred HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235 244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 323 (375)
Q Consensus 244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i 323 (375)
+ +|-+..+... .+.. +-+.+-..+|++.+|++|++||+++|.+.|+|+.+.++|+++-.|+.. +.......+.
T Consensus 212 l-Gw~A~~g~~~----~s~~-~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La 284 (353)
T KOG1381|consen 212 L-GWCALKGSLS----PSAV-LPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLA 284 (353)
T ss_pred h-cchhhcCccC----hhhh-hHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHH
Confidence 3 3444433221 1111 112233348999999999999999999999999999999997777655 4455666666
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235 324 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 373 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~ 373 (375)
..|+...|+| ++| ++..+.+..|.+|.+.+|.| ++.+|-++++-+
T Consensus 285 ~aG~~s~q~~--pyy-~~lg~~~~~L~~~i~~vdiD--np~dC~k~f~sN 329 (353)
T KOG1381|consen 285 AAGIASDQTW--PYY-AALGAVAARLGSQIYKVDID--NPSDCWKKFKSN 329 (353)
T ss_pred HhhhccCCCc--hHH-HHHHHHHHHHHhheeeeecC--ChHHHHHHHHhc
Confidence 7788888886 233 44788899999999999986 777888887654
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=4.9e-26 Score=217.56 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=148.4
Q ss_pred HHHHHHhhhhhhccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc--
Q 017235 139 LALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIY-- 216 (375)
Q Consensus 139 v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~Y-- 216 (375)
++++++++++ +||++|+|+|++|+|+||+|||++|+++++.++.++.++++.+... + .......++.+.|
T Consensus 55 vf~~~~~gni--iNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l-----~-~i~i~~~~i~~lY~~ 126 (299)
T PRK13592 55 VFGFWMILRI--ADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL-----F-MNNVGWFLFLYIYGT 126 (299)
T ss_pred HHHHHHHhHH--HHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH
Confidence 4567888898 9999999999999999999999999999999998886666655432 2 1122333445566
Q ss_pred ---cCCCCCcccccchhHHHHHHHHHHHHHHH--HHHHH--HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHH
Q 017235 217 ---SVPPFRMKRFAVAAFLIIATVRGFLLNFG--VYYAT--RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEG 289 (375)
Q Consensus 217 ---S~pPl~lKr~~~~g~l~vg~~~G~~~~~g--~~~a~--~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~eg 289 (375)
+. ++|+.++.||+.++...|..+..| .|.+. ....|.+ ......+++++..++.++++|+.+|++| ||
T Consensus 127 lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~g 201 (299)
T PRK13592 127 LMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PK 201 (299)
T ss_pred HHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Cc
Confidence 75 899999999999999999866443 12111 1112211 1112113345667788999999999999 88
Q ss_pred hHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---HHH
Q 017235 290 DRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI-YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYT---KVI 365 (375)
Q Consensus 290 Dr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~-~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~ 365 (375)
|++ |.+|+|+++|.|++.++..++.+++.+..++.-+ ....++ +..++..+.+.++..+.-.++.. ++.
T Consensus 202 d~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~------~~l~~~~~~~l~~~~~~lk~p~~~~~~~~ 274 (299)
T PRK13592 202 DET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV------VVLVLNVIWMTVQFEQFIKSPTRFNIRER 274 (299)
T ss_pred ccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH------HHHHHHHHHHHHHHHHHhcCCCcchhhHH
Confidence 886 5999999999999999999888887776553322 111111 22224446667777755433312 247
Q ss_pred HHHHHHhcc
Q 017235 366 LATCCTLGM 374 (375)
Q Consensus 366 ~~~f~~~~~ 374 (375)
.+++.|.+|
T Consensus 275 ~~~~~ki~~ 283 (299)
T PRK13592 275 VERYTYITE 283 (299)
T ss_pred HHHHHHHHH
Confidence 778887776
No 49
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.94 E-value=1.2e-25 Score=211.77 Aligned_cols=175 Identities=30% Similarity=0.572 Sum_probs=135.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccccccc--CCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017235 123 PNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGP 200 (375)
Q Consensus 123 ~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~--n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~ 200 (375)
+...++..+...++++ .+....+|. +||+.|+|+|++ |+|+||+++|+++++++..++.++.+++++++ +..++
T Consensus 17 ~~~~~~~~~~~~~l~~-~~~~~~~~~--~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~-~~~~~ 92 (257)
T PF01040_consen 17 GGPFNWPIFLLGLLAV-FLLQLAVYL--LNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLA-LLLGP 92 (257)
T ss_pred cCCCCHHHHHHHHHHH-HHHHHHHHH--hhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HhcCc
Confidence 3345554443322222 244556666 999999999999 78999999999999999998888888888776 44678
Q ss_pred HHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHH
Q 017235 201 FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAV 280 (375)
Q Consensus 201 ~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i 280 (375)
..+.+..++.+.+++|| ||+++||+++++++++++..|..+..+.+. ..+ +++.+.++.+.+.+++......
T Consensus 93 ~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~ 164 (257)
T PF01040_consen 93 WFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG------DPPPPPFLLAIFFFLLIFAIMF 164 (257)
T ss_pred hhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC------cccHHHHHHHHHHHHHHHHHHH
Confidence 77777777788889999 889999999999999999888765555443 221 2234444555666677888888
Q ss_pred HccCCChHHhHhCCCCcceeeechhHHHH
Q 017235 281 TKDLPDVEGDRKFKISTLATKLGVKNIAF 309 (375)
Q Consensus 281 ~~di~D~egDr~~Gi~TLpv~lG~~~a~~ 309 (375)
.+|++|+|+|++.|+||+|+++|+++++.
T Consensus 165 ~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 165 FNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 88999999999999999999999999988
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=3.7e-19 Score=172.10 Aligned_cols=149 Identities=24% Similarity=0.285 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC--CCC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPY 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n--~p~ 166 (375)
.+++++|++++|||++.++.+...+++.+.-.. +...+...+.+++ .++++.+++|+ +||++|+|+|++| +|+
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~--~~~~~~~~llafl-~~~l~~sa~y~--iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLL--NPGALLKVLLAFV-LFCLASSAVYL--VNDIRDVEADRLHPTKRN 82 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHH-HHHHHHHHHHH--HHhHHHHHhhccCCCCCC
Confidence 456889999999999998887666543221111 1112222222222 23455677777 9999999999998 568
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 246 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~ 246 (375)
||+++|++|+++++.++.++.++|+.++. ..|+.+..+.+..+++.++||. ++||++.+++++++...+.-+..|+
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~ 158 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGG 158 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887764 4677776666666777889994 8999999999888877776545443
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.82 E-value=3.2e-18 Score=175.81 Aligned_cols=188 Identities=23% Similarity=0.289 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC-
Q 017235 87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN- 163 (375)
Q Consensus 87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~--~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n- 163 (375)
..+..+++|++++|||++.++.+..++.. .+.. +...+...+.+++ .++++.+++|+ +||++|+|+|++|
T Consensus 186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l----~a~~~~~~~~~~~~~~~f~-~~~l~~sa~~~--~ND~~D~e~Dr~~~ 258 (479)
T PRK08238 186 PRPARLRTWLKALRVHQWAKNLLVFVPLL----AAHQFGDLQALLAALLAFL-AFSLCASAVYI--LNDLLDLEADRAHP 258 (479)
T ss_pred CCchHHHHHHHHhCCcHHHHHHHHHHHHH----HhcccCChHHHHHHHHHHH-HHHHHHHHHHH--HHhhHHhhhhccCC
Confidence 34567899999999999999988766433 2211 1111222221222 23466778887 9999999999999
Q ss_pred -CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHH
Q 017235 164 -KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL 242 (375)
Q Consensus 164 -~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~ 242 (375)
+|+||+++|++|+++|+.++.+++++|+.+++. .|+.++.+.+..+++.++||. ++||+++++++++|+..++-+
T Consensus 259 rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~-l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~ 334 (479)
T PRK08238 259 RKRRRPFASGALPIPFGLAAAPLLLLAGLALALA-LGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRI 334 (479)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHH
Confidence 468999999999999999999999999877654 677666665666777889993 899999999999988877755
Q ss_pred HHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCC
Q 017235 243 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI 295 (375)
Q Consensus 243 ~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi 295 (375)
..|+. +. + .+.+. |++ .+.++..+...+.|...|.++++..|.
T Consensus 335 ~~G~~-a~----~--~~~s~--wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 335 IAGAA-AI----G--VALSF--WLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHH-Hh----c--cCHHH--HHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 55532 22 1 12222 222 223344556677899999999999886
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.52 E-value=3.1e-15 Score=142.53 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--C
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y 166 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~ 166 (375)
....+.|+|++||+.-..+++...++++ ++.+ .+++..++..-++. +++.++.|. +||+++...|.+++| .
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYa---lap~-p~s~~~l~~~tvGT-~L~S~sANa--iNQ~~E~~~DsqM~RT~~ 163 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYA---LAPG-PFSFPTLLYTTVGT-GLCSASANA--INQIFEPPFDSQMKRTQN 163 (409)
T ss_pred cchHHHHHHhcccceEEEEeeecccccc---cccc-CCCcchhHHHhhhh-HHHHhhhHh--hhhhccCCchhhhHhhcc
Confidence 3567899999999986555555554432 3333 35555554332232 344455555 999999999999987 6
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245 (375)
Q Consensus 167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g 245 (375)
||+++|++|+..|+.++.+..+.|+.+.++..||....++..-++ ...+|+ .+||..+ .|.++|.+.|.++++.
T Consensus 164 Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 164 RPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAIPPLM 238 (409)
T ss_pred cccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccCCccc
Confidence 999999999999999999888888776666678988877765444 356899 8999875 6889999999999999
Q ss_pred HHHHHHhhhccCccchHHHHHHHHHHHHHHHHH--HHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHHHH
Q 017235 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVI--AVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNY 319 (375)
Q Consensus 246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~--~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~a~ 319 (375)
+|.+.++..+ +..++++...+.|.+-. .+-.++ .++..+.|.+++++.=- .+.+.+....++.+++
T Consensus 239 GwAAasg~l~------~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~ 309 (409)
T KOG1380|consen 239 GWAAASGLLD------PGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY 309 (409)
T ss_pred hhhhhccCCC------ccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence 9988765332 23344444555554431 122233 34568999999998743 3445555555555553
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.24 E-value=5.8e-12 Score=115.33 Aligned_cols=227 Identities=20% Similarity=0.158 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH--HHHHhhhhhhccccccc--cccccCC
Q 017235 89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLA--LICGNGYIVGINQIYDI--GIDKVNK 164 (375)
Q Consensus 89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~--lv~a~~~v~~iNd~~D~--~~D~~n~ 164 (375)
.++.+.|+--.||....+...+...+.+.+. ...+..++.+.- .++..++ .+..++++ .|.|+|. .+|++..
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalay-rs~~~~d~~l~~-~fl~a~avlavh~agnl--vntyfdf~kgid~kka 133 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAY-RSHGAEDFRLAT-FFLCAFAVLAVHCAGNL--VNTYFDFIKGIDHKKA 133 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHH-hhccccchhHHH-HHHHHhhheeeecccch--hhhhhhhhhccccccc
Confidence 5678889999999987666555554443332 222223333321 1122222 34577888 9999997 5888777
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHH--HhHHHHH----HHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHH
Q 017235 165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA--FNFGPFI----TSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVR 238 (375)
Q Consensus 165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~--~~~~~~~----~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~ 238 (375)
.+|.++...+.+.++..++..+...|+.... ..+.|.- .++...++--.++|+.+ +-+|+.. +|.+++-+.+
T Consensus 134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg-igfkyia-lgdliili~f 211 (359)
T KOG4581|consen 134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG-IGFKYIA-LGDLIILILF 211 (359)
T ss_pred cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc-cceEEEe-ccCEEEEEee
Confidence 7899999999999999888888777765432 1233431 12222333345789864 5778775 4777777778
Q ss_pred HHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235 239 GFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318 (375)
Q Consensus 239 G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a 318 (375)
|.+.++-+|..+++.+ .|.+- ..+++..+-+-++..-|+.+|.|.||++|+-|+++.+|...+-.++..++.+.
T Consensus 212 gpiavlfaf~~q~g~l----~~~~l--~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~p 285 (359)
T KOG4581|consen 212 GPIAVLFAFAIQTGHL----AIFPL--GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAP 285 (359)
T ss_pred chHHHHHHHHHhcCce----eEEee--hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHH
Confidence 8876666666555433 23221 23444556677788899999999999999999999999999988988888888
Q ss_pred HHHHHHHHH
Q 017235 319 YVAAILAAI 327 (375)
Q Consensus 319 ~~~~i~~~~ 327 (375)
|.+..+.+.
T Consensus 286 y~lf~i~~~ 294 (359)
T KOG4581|consen 286 YLLFFIFAL 294 (359)
T ss_pred HHHHHHHHH
Confidence 877665543
No 54
>PRK13595 ubiA prenyltransferase; Provisional
Probab=90.60 E-value=5.2 Score=39.07 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHHccCCChHHhHhCCCCccee---eechhHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKISTLAT---KLGVKNIAFLGSGL 314 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi~TLpv---~lG~~~a~~l~~~l 314 (375)
........+||+-|.|.|+++-++ =++ ++..+.++.+...+
T Consensus 58 p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~ 101 (292)
T PRK13595 58 PFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAV 101 (292)
T ss_pred HHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHH
Confidence 344456789999999999977654 344 33344444443333
No 55
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=90.58 E-value=3.6 Score=40.32 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=17.7
Q ss_pred hhhhhhccccccccccccCCCC
Q 017235 145 NGYIVGINQIYDIGIDKVNKPY 166 (375)
Q Consensus 145 ~~~v~~iNd~~D~~~D~~n~p~ 166 (375)
.++++-.|+..|.|+|++|+|+
T Consensus 189 ~~~Il~aNNirDie~D~~~gk~ 210 (303)
T COG1575 189 IANILLANNLRDIEEDIRNGKY 210 (303)
T ss_pred HHHHHHhcccccchhHHhcCCc
Confidence 4445448999999999999875
No 56
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=90.53 E-value=4 Score=40.07 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=22.8
Q ss_pred hhhhccccccccccccCCC-CCccccCcCCHHHHHHHHHH
Q 017235 147 YIVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIF 185 (375)
Q Consensus 147 ~v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~ 185 (375)
+++-.||+-|+|.|+.+.+ +-|. ++.++.+..+...
T Consensus 189 ~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~ 225 (304)
T PRK07419 189 LILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW 225 (304)
T ss_pred HHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence 3334899999999999865 4444 3444555444333
No 57
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=90.20 E-value=1.9 Score=41.28 Aligned_cols=43 Identities=19% Similarity=0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL 314 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l 314 (375)
.++...+-.++||+.|.|.|+++ ++.=|..-|+ +.+..+..++
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~ 91 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILL 91 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHH
Confidence 34555566789999999999999 7888888775 4444444433
No 58
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=89.60 E-value=3.7 Score=40.36 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.4
Q ss_pred hccccccccccccCC-CCCccccCc
Q 017235 150 GINQIYDIGIDKVNK-PYLPIAAGD 173 (375)
Q Consensus 150 ~iNd~~D~~~D~~n~-p~RPl~sG~ 173 (375)
..||+.|+|.|+.+. |+-|+.-|+
T Consensus 207 ~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 207 TLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHhHhHHHcCCcccceeEcH
Confidence 379999999999874 566775554
No 59
>PRK13592 ubiA prenyltransferase; Provisional
Probab=89.56 E-value=8.6 Score=37.64 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLL 316 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l 316 (375)
+++.+.+-.++||+.|+|-|+.+ ++.=|+-=|+ +.++.++..+..
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~ 102 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVA 102 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 44555667889999999999665 5666665554 555555544433
No 60
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=88.22 E-value=3.3 Score=40.52 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLL 317 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~ 317 (375)
.+...+-+.+||+-|.|.|++++. +=|+.-| .+.+..+...+..+
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~ 111 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIA 111 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHH
Confidence 345556688999999999998773 4455555 44444444434333
No 61
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=87.24 E-value=8.2 Score=37.48 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=25.0
Q ss_pred hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHH
Q 017235 148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTG 190 (375)
Q Consensus 148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~g 190 (375)
++-.||.-|+|.|+.+.+ +-|. ++.++.+..+...+..++
T Consensus 177 iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~ 217 (285)
T TIGR02235 177 ILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLS 217 (285)
T ss_pred HHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHH
Confidence 333799999999999865 4444 444555555444443333
No 62
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=86.97 E-value=11 Score=37.12 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=22.3
Q ss_pred HccCCChHHhHhCCCCcceeeech---hHHHHHHH
Q 017235 281 TKDLPDVEGDRKFKISTLATKLGV---KNIAFLGS 312 (375)
Q Consensus 281 ~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~ 312 (375)
+||+.|+|-|+.+ +++.|+.=|+ +.++.+..
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~ 105 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVI 105 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHH
Confidence 9999999999965 5788876665 44444333
No 63
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=86.83 E-value=15 Score=35.22 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=17.8
Q ss_pred ccccccccccccCC-CCCccccCc
Q 017235 151 INQIYDIGIDKVNK-PYLPIAAGD 173 (375)
Q Consensus 151 iNd~~D~~~D~~n~-p~RPl~sG~ 173 (375)
+||.-|+|.|+.++ ++-|..-|+
T Consensus 180 ~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 180 VFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHhcccchhHHHcCCcccchhcch
Confidence 79999999999875 456765554
No 64
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=86.63 E-value=3.9 Score=37.99 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccCCChHHhHhC-CCCcceeeechhH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKF-KISTLATKLGVKN 306 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~-Gi~TLpv~lG~~~ 306 (375)
++.....+..||+.|.|.|+.. +.+.-|..-|+-+
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 3556677889999999999996 3455566556543
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.21 E-value=9.6 Score=38.55 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.4
Q ss_pred ccccccccccccCC-CCCccccCc
Q 017235 151 INQIYDIGIDKVNK-PYLPIAAGD 173 (375)
Q Consensus 151 iNd~~D~~~D~~n~-p~RPl~sG~ 173 (375)
.||+-|+|.|+... +.-|..-|+
T Consensus 271 vnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 271 VNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HhhhcchhhHHHcCCcccceeech
Confidence 79999999999764 667776664
No 66
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.08 E-value=4.4 Score=39.84 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.7
Q ss_pred ccccccccccccCCC-CCccccC
Q 017235 151 INQIYDIGIDKVNKP-YLPIAAG 172 (375)
Q Consensus 151 iNd~~D~~~D~~n~p-~RPl~sG 172 (375)
+||+-|.|.|+.+.+ +-|+.=|
T Consensus 198 indirDiEGDr~~G~kTLPV~lG 220 (307)
T PRK13591 198 VYDFKDVKGDTLAGIKTLPVSLG 220 (307)
T ss_pred HHHhhhhHhHHHcCCeeEEEEEC
Confidence 799999999999864 5676544
No 67
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.74 E-value=4 Score=40.22 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=25.1
Q ss_pred hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHH
Q 017235 148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTG 190 (375)
Q Consensus 148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~g 190 (375)
++-.||+-|+|.|+.+.+ +-|. ++.++.+..+...+.+++
T Consensus 205 ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a 245 (317)
T PRK13387 205 IMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS 245 (317)
T ss_pred HHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence 333899999999999865 4444 444555555444444333
No 68
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=85.58 E-value=12 Score=36.07 Aligned_cols=37 Identities=24% Similarity=-0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 268 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 268 ~l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
.+..++...+...+||+.|+|-|+++-+ +.=|..-|+
T Consensus 53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3344456667788999999999999877 455665554
No 69
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=85.48 E-value=4.5 Score=39.37 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
++...+-..+||+.|+|-|+++.+ +.=|+.-|+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 345555678999999999998876 577877785
No 70
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=85.47 E-value=9.1 Score=37.40 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHccCCChHHhHhCC-CCcceeeec---hhHHHHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFK-ISTLATKLG---VKNIAFLGSGLLLLN 318 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~G-i~TLpv~lG---~~~a~~l~~~l~l~a 318 (375)
+...+..++||+.|+|.||++- ++.=|..=| .+.+..+..++..++
T Consensus 57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 4455667899999999999962 233344444 454544444443333
No 71
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=84.49 E-value=11 Score=36.26 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHHHH
Q 017235 270 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLLLN 318 (375)
Q Consensus 270 ~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l~a 318 (375)
..++...+-..+||+-|.|-|+++. +.=|+.-|+ +.+..+...+..++
T Consensus 45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~ 95 (279)
T PRK09573 45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVG 95 (279)
T ss_pred HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence 3345566667899999999999864 555655554 55555444444333
No 72
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=83.39 E-value=6.9 Score=37.48 Aligned_cols=45 Identities=18% Similarity=0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLLL 317 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l~ 317 (375)
++...+-..+||+-|.|-|+++. +.=|+.-|+ +.+..+..++.++
T Consensus 48 ~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~ 95 (276)
T PRK12882 48 FLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAA 95 (276)
T ss_pred HHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHH
Confidence 34455567899999999999754 666777765 4444444444333
No 73
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=83.10 E-value=4.1 Score=39.19 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHHHHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLL 315 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~ 315 (375)
+...+-+.+||+-|.|.|++++ ++=|+.-| ++.++.+..++.
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~ 93 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLT 93 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHH
Confidence 4555667899999999999876 44555444 344555444333
No 74
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=82.16 E-value=8.4 Score=38.27 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHHHH
Q 017235 278 IAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNY 319 (375)
Q Consensus 278 ~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~a~ 319 (375)
-..+||+-|.|.|+.++ ||=|+.-| ++.+..+...+..++.
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~ 109 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAI 109 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence 36799999999999765 45555555 4555555544444433
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=82.00 E-value=6.5 Score=37.93 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=23.5
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
++...+-..+||+.|.|-|++..+ ++=|+.-|+
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 88 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA 88 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence 345556678999999999997665 355665564
No 76
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=81.81 E-value=30 Score=33.58 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHccCCChHHhHhCCCCc----ceeeec---hhHHHHHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEGDRKFKIST----LATKLG---VKNIAFLGSGLLLLN 318 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr~~Gi~T----Lpv~lG---~~~a~~l~~~l~l~a 318 (375)
..+...+-...||+.|.|.|+....|| =|+.-| .+.+..+..++..++
T Consensus 49 ~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia 103 (296)
T PRK05951 49 YFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA 103 (296)
T ss_pred HHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence 335556667899999966665554222 333333 455555544443333
No 77
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.61 E-value=22 Score=34.51 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=24.0
Q ss_pred hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHH
Q 017235 148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAV 188 (375)
Q Consensus 148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i 188 (375)
+.-.||.-|+|.|+.+.+ +-|. ++..+.+..+...+..
T Consensus 180 il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~ 218 (284)
T TIGR00751 180 VLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLA 218 (284)
T ss_pred HHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHH
Confidence 333799999999998865 3343 4555555554444333
No 78
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=81.23 E-value=15 Score=35.47 Aligned_cols=45 Identities=24% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeec---hhHHHHHHHHH
Q 017235 270 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLG---VKNIAFLGSGL 314 (375)
Q Consensus 270 ~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG---~~~a~~l~~~l 314 (375)
...+...+-..+||+.|.|-|+++.+ +.=|..-| ++.+..+...+
T Consensus 44 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (279)
T PRK12869 44 GGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL 92 (279)
T ss_pred HHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH
Confidence 33344566688999999999998764 33444444 45554444333
No 79
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=81.16 E-value=23 Score=34.42 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=28.2
Q ss_pred ccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHHHHH
Q 017235 151 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTGLLI 193 (375)
Q Consensus 151 iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~gl~l 193 (375)
+||+-|+|.||.+.. +-|. ++.++.+..+...+.+++.++
T Consensus 179 i~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~ 219 (282)
T PRK13105 179 FGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVL 219 (282)
T ss_pred HHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHH
Confidence 899999999998753 4444 566777777766666555543
No 80
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=80.45 E-value=52 Score=31.88 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=24.2
Q ss_pred ccccccccccccCC-CCCccccCcCCHHHHHHHHHHHHHHHH
Q 017235 151 INQIYDIGIDKVNK-PYLPIAAGDLSVQSAWFLVIFFAVTGL 191 (375)
Q Consensus 151 iNd~~D~~~D~~n~-p~RPl~sG~ls~~~a~~~~~~l~i~gl 191 (375)
+||+-|+|.|++.. ++-|. ++..+.+..+...+.+++.
T Consensus 184 in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 184 FSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAA 222 (282)
T ss_pred HHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHH
Confidence 79999999999764 44554 4445555555544444443
No 81
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=79.83 E-value=51 Score=31.72 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=21.7
Q ss_pred ccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHH
Q 017235 151 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAV 188 (375)
Q Consensus 151 iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i 188 (375)
.||.-|+|.|+.+.+ +-|. ++..+.+..+...+.+
T Consensus 187 ~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~ 222 (293)
T PRK06080 187 ANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLA 222 (293)
T ss_pred hcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHH
Confidence 799999999998754 4454 3334444444433333
No 82
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=79.53 E-value=11 Score=36.22 Aligned_cols=39 Identities=18% Similarity=0.041 Sum_probs=26.5
Q ss_pred HHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHH
Q 017235 275 ALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL 314 (375)
Q Consensus 275 ~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l 314 (375)
..+-..+||+-|+|.|+.+. ++=|+.-|+ +.+..+...+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l 91 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLL 91 (277)
T ss_pred HHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHH
Confidence 34567899999999999764 666766554 4444444433
No 83
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=78.30 E-value=10 Score=36.49 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
.+...+-...||+.|.|-|++..+ +.=|+.-|+
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 83 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA 83 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence 344455678999999999997665 245555564
No 84
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=78.04 E-value=28 Score=33.74 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 269 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 269 l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
+..++...+-..+||+.|.|-|+++.+ ++=|+.-|+
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 82 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA 82 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence 334455556678999999999998864 233555554
No 85
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=77.74 E-value=31 Score=33.51 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=16.0
Q ss_pred ccccccccccccCC-CCCccccC
Q 017235 151 INQIYDIGIDKVNK-PYLPIAAG 172 (375)
Q Consensus 151 iNd~~D~~~D~~n~-p~RPl~sG 172 (375)
+.++.|+|.|++.. +.-|+-=|
T Consensus 178 iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 178 IYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHhcchhhHHHcCCCchHHHHC
Confidence 78899999999875 44555444
No 86
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=76.84 E-value=20 Score=34.42 Aligned_cols=43 Identities=9% Similarity=-0.120 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeec---hhHHHHHH
Q 017235 269 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLG---VKNIAFLG 311 (375)
Q Consensus 269 l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG---~~~a~~l~ 311 (375)
+..++...+-..+||+.|.|.|+++.+ +.=|+.-| ++.+..+.
T Consensus 43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (282)
T TIGR01475 43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMI 89 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 344466667788999999999998742 22344444 45554443
No 87
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=76.82 E-value=12 Score=36.38 Aligned_cols=32 Identities=16% Similarity=-0.037 Sum_probs=22.6
Q ss_pred HHHHHHHHHccCCChHHhHhCCCC-cceeeech
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKIS-TLATKLGV 304 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi~-TLpv~lG~ 304 (375)
+...+-..+||+.|.|-|++..+. .=|..-|+
T Consensus 57 ~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 57 ATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 444556789999999999876553 45655555
No 88
>PLN02922 prenyltransferase
Probab=75.59 E-value=32 Score=33.87 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=23.2
Q ss_pred hhhhccccccccccccCCC-CCccccCcCCHHHHHHHHHH
Q 017235 147 YIVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIF 185 (375)
Q Consensus 147 ~v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~ 185 (375)
+++-.||.-|+|.|+++++ +-|. ++.++.+..+...
T Consensus 203 ~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~ 239 (315)
T PLN02922 203 LILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHH
Confidence 4444899999999999875 4444 3444555444333
No 89
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=74.57 E-value=16 Score=35.75 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 271 VTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
.++...+-..+||+-|+|-|+++-+ +.=|+.-|+
T Consensus 53 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 53 GLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 3355556678999999999998887 577776665
No 90
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=74.33 E-value=34 Score=33.68 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHccCCChHHhHhCCCC-cceeeech
Q 017235 270 FVTLFALVIAVTKDLPDVEGDRKFKIS-TLATKLGV 304 (375)
Q Consensus 270 ~~~l~~~~~~i~~di~D~egDr~~Gi~-TLpv~lG~ 304 (375)
..++...+-..+||+-|.|-|++..+. .=|+.-|+
T Consensus 80 ~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~ 115 (314)
T PRK12878 80 GAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQ 115 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Confidence 333555566789999999999875432 23444453
No 91
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=73.74 E-value=31 Score=33.56 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=17.6
Q ss_pred ccccccccccccCC-CCCccccCc
Q 017235 151 INQIYDIGIDKVNK-PYLPIAAGD 173 (375)
Q Consensus 151 iNd~~D~~~D~~n~-p~RPl~sG~ 173 (375)
+|++.|+|.|++.. |.-|..-|+
T Consensus 186 ~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 186 LYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHhccHHHHHHcCCCcccHHhhh
Confidence 79999999998764 666766654
No 92
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=73.12 E-value=51 Score=32.17 Aligned_cols=43 Identities=23% Similarity=0.009 Sum_probs=25.1
Q ss_pred HHHHHHHccCCChHHhHhC-----CC-----Ccceeeec---hhHHHHHHHHHHHHH
Q 017235 275 ALVIAVTKDLPDVEGDRKF-----KI-----STLATKLG---VKNIAFLGSGLLLLN 318 (375)
Q Consensus 275 ~~~~~i~~di~D~egDr~~-----Gi-----~TLpv~lG---~~~a~~l~~~l~l~a 318 (375)
..+ .++||+-|.|-|+.. ++ ++=|+.-| ++.+..+...+.+++
T Consensus 55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~ 110 (297)
T PRK12871 55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVT 110 (297)
T ss_pred HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHH
Confidence 444 489999999999742 22 33444444 455555554444443
No 93
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=71.67 E-value=39 Score=32.82 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHHHHccCCChHHhHhCCC-Ccceeeech---hHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKI-STLATKLGV---KNIAFLGSGLL 315 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~---~~a~~l~~~l~ 315 (375)
+...+-..+||+.|.|-|+++.+ +.=|+.-|+ +.+..+...+.
T Consensus 55 l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~ 101 (296)
T PRK04375 55 LVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLG 101 (296)
T ss_pred HHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 44555678999999999998654 334444454 55544444333
No 94
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=71.45 E-value=19 Score=34.63 Aligned_cols=43 Identities=23% Similarity=0.123 Sum_probs=26.8
Q ss_pred HHHHHHHHHccCCChHHhHhCCC-Ccceeeech---hHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKI-STLATKLGV---KNIAFLGSGLL 315 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~---~~a~~l~~~l~ 315 (375)
+...+-..+||+.|.|-|++..+ +.=|+.-|+ +.+......+.
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~ 99 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLV 99 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 44455678999999999986554 244555554 44444444333
No 95
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=70.63 E-value=22 Score=34.16 Aligned_cols=47 Identities=23% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHccCCChHHhHhCCC-Ccceeeec---hhHHHHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEGDRKFKI-STLATKLG---VKNIAFLGSGLLLL 317 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG---~~~a~~l~~~l~l~ 317 (375)
..+...+-..+||+-|.|-|+++.+ +.=|+.-| .+.+..+...+..+
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~ 94 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL 94 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3345556678999999999998543 33455445 45555554444333
No 96
>PRK08238 hypothetical protein; Validated
Probab=70.62 E-value=25 Score=36.77 Aligned_cols=47 Identities=26% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech---hHHHHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV---KNIAFLGSGLLLLN 318 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~---~~a~~l~~~l~l~a 318 (375)
++...+..++||+-|+|.||++-+ +.=|+.-|+ +.+..+..++.+++
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 355566788999999999999742 444655554 44544444443333
No 97
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=69.37 E-value=25 Score=34.46 Aligned_cols=37 Identities=14% Similarity=-0.025 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 268 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 268 ~l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
.+.+++.-.+-..+||+-|+|-|+++-+ +.=|..-|+
T Consensus 53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3344444455578999999999999886 455665565
No 98
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=67.84 E-value=65 Score=31.53 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 270 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 270 ~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
..++...+-..+||+-|+|-|+++-+ +.=|+.-|+
T Consensus 57 g~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~ 92 (300)
T PRK13106 57 ALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA 92 (300)
T ss_pred HHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence 33455556678999999999998743 234555554
No 99
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=66.98 E-value=62 Score=31.70 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=27.6
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech---hHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV---KNIAFLGSGL 314 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~---~~a~~l~~~l 314 (375)
++...+-..+||+.|.|-|++..+ +.=|+.-|+ +.+..+...+
T Consensus 57 ~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 57 SLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 344556678999999999998755 244555564 4444444433
No 100
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=65.77 E-value=31 Score=33.51 Aligned_cols=33 Identities=18% Similarity=-0.026 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 304 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~ 304 (375)
++...+-..+||+-|+|-|+++-+ +.=|+.-|+
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~ 85 (291)
T PRK12886 52 VGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGL 85 (291)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCC
Confidence 344455567999999999998763 234666664
No 101
>PLN02878 homogentisate phytyltransferase
Probab=64.37 E-value=34 Score=33.26 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHHH
Q 017235 280 VTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLLL 317 (375)
Q Consensus 280 i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l~ 317 (375)
-+||+.|+|-|| .+++..|+-=|+ +.+..+...+.++
T Consensus 41 glNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~~~~~l 80 (280)
T PLN02878 41 GLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVTSFAIM 80 (280)
T ss_pred chhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 479999999995 678999999886 4555544444333
No 102
>PLN02776 prenyltransferase
Probab=59.97 E-value=60 Score=32.48 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech---hHHHHHHH
Q 017235 269 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV---KNIAFLGS 312 (375)
Q Consensus 269 l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~---~~a~~l~~ 312 (375)
+..++...+-..+||+-|.|-|+++.+ +.=|+.-|+ +.+..+..
T Consensus 36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~ 83 (341)
T PLN02776 36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAV 83 (341)
T ss_pred HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 344455566678999999999998765 344555554 44444443
No 103
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=47.72 E-value=3e+02 Score=28.09 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHhhhhccC-----CCCCcccccchhHHHHHHHH
Q 017235 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSL------YCLGLFLGTIYSV-----PPFRMKRFAVAAFLIIATVR 238 (375)
Q Consensus 170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l------~~l~~~l~~~YS~-----pPl~lKr~~~~g~l~vg~~~ 238 (375)
..+|+.+|..+.....+++++-++.+...|...+.+ ...+.+....++. || -||-.-.+-+..|...
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--GKRGRALALVFTGLTL 148 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHH
Confidence 345566677777777777777665543223222211 1123333333331 44 2332233444444443
Q ss_pred HHH--HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCC--ChHHhHhCCCCcceeeechhHHHHHH
Q 017235 239 GFL--LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP--DVEGDRKFKISTLATKLGVKNIAFLG 311 (375)
Q Consensus 239 G~~--~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~--D~egDr~~Gi~TLpv~lG~~~a~~l~ 311 (375)
+.. .|+|.|+.. .+.|....+.++.. .+... ..+..-+| |.++++....++..-.+.+.+.....
T Consensus 149 A~v~GvPLGt~ig~------~~GWR~~F~~ia~l-~ll~~-~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l 217 (394)
T COG2814 149 ATVLGVPLGTFLGQ------LFGWRATFLAIAVL-ALLAL-LLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGL 217 (394)
T ss_pred HHHHhccHHHHHHH------HhhHHHHHHHHHHH-HHHHH-HHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHH
Confidence 332 266666532 23454444333222 11111 22344566 66666667667777777776554433
No 104
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=42.47 E-value=89 Score=32.79 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred ccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHhhhhccCCCCCcc
Q 017235 151 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG------PFITSLYCLGLFLGTIYSVPPFRMK 224 (375)
Q Consensus 151 iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~------~~~~~l~~l~~~l~~~YS~pPl~lK 224 (375)
-+|++|.-+|.....++++ +.++....+..+++..++....+ -+.+.+...+.+-.++++. ++|
T Consensus 372 sHDiY~~vik~~ase~~~v-------~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlgl---fWK 441 (529)
T COG4147 372 SHDLYAMVIKKGATEKKEV-------RVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGL---FWK 441 (529)
T ss_pred HhHHHHHHhCCCCCcccee-------hhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHH---HHh
Confidence 4788877666542223332 22333444444555544421111 1122222233344556663 889
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 017235 225 RFAVAAFLIIATVRGFLLNFG 245 (375)
Q Consensus 225 r~~~~g~l~vg~~~G~~~~~g 245 (375)
|..-.| .+.|...|....+.
T Consensus 442 r~n~~G-Ai~G~~~GL~~tlv 461 (529)
T COG4147 442 RLNTAG-AIAGMLLGLIVTLV 461 (529)
T ss_pred hccHHh-HHHHHHHHHHHHHH
Confidence 887655 35666667655443
No 105
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=39.92 E-value=14 Score=34.00 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHccCCChHHhH----------hCCCCcceeeechhHH
Q 017235 273 LFALVIAVTKDLPDVEGDR----------KFKISTLATKLGVKNI 307 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr----------~~Gi~TLpv~lG~~~a 307 (375)
-+..++++.+|++|+.+|. +.|+.|+|+.+..+..
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 4456788999999998888 8999999999884433
No 106
>PRK10581 geranyltranstransferase; Provisional
Probab=33.37 E-value=25 Score=34.34 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGS 312 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~l~~ 312 (375)
..-+..++++..|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 212 g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~ 264 (299)
T PRK10581 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_pred HHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHH
Confidence 335567789999999975 457789999999999987776554
No 107
>PRK11383 hypothetical protein; Provisional
Probab=31.60 E-value=3.5e+02 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=12.4
Q ss_pred HHHHHHHHccCCChHHhH
Q 017235 274 FALVIAVTKDLPDVEGDR 291 (375)
Q Consensus 274 ~~~~~~i~~di~D~egDr 291 (375)
...++.+-|+.||...++
T Consensus 115 LFgai~vQKn~RD~~~~~ 132 (145)
T PRK11383 115 LFGAVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHHHHhhhhhhhhcc
Confidence 344567789999985543
No 108
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.15 E-value=3.6e+02 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHH
Q 017235 159 IDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV 194 (375)
Q Consensus 159 ~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~ 194 (375)
-|+.|+. |.+=+-+|..|.+..+.+..+++++++
T Consensus 5 p~RLN~e--PvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNRE--PVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcCC--CceecccCHHHHHHHHHHHHHHHHHHH
Confidence 4677653 455556777887766665555554433
No 109
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=22.57 E-value=4.1e+02 Score=21.29 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 017235 278 IAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQA 332 (375)
Q Consensus 278 ~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~~~ 332 (375)
.+.+-+++.- +..+.|.--++..-|+| +...++..+|+-+...++..+.-
T Consensus 21 ~mtvwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~~l 70 (88)
T PF09928_consen 21 GMTVWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGPSL 70 (88)
T ss_pred HHHHHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCccH
Confidence 3455566665 77888988888888887 34456667777777777765543
No 110
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.42 E-value=2.9e+02 Score=22.49 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHhhhhccCCCCCcccc
Q 017235 184 IFFAVTGLLIVAFN--FGPFITSLYCLGLFLGTIYSVPPFRMKRF 226 (375)
Q Consensus 184 ~~l~i~gl~l~~~~--~~~~~~~l~~l~~~l~~~YS~pPl~lKr~ 226 (375)
.+..++|++.+++. +++.... ...+.++..+-+.||.++-|+
T Consensus 33 ti~aiVg~i~Gf~~Qqls~tvy~-vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQQQLSVTVYI-VGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCchhhhc
Confidence 34456677777642 2333332 234555556667777655443
No 111
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=20.50 E-value=39 Score=33.21 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChH-----------HhHhCCCCcceeeechh
Q 017235 270 FVTLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVK 305 (375)
Q Consensus 270 ~~~l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~ 305 (375)
+.--+.+++++.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 198 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 198 FGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 112
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.46 E-value=4.4e+02 Score=22.25 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=19.9
Q ss_pred ccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHH
Q 017235 159 IDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV 194 (375)
Q Consensus 159 ~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~ 194 (375)
-|+.|+. |.+=+-+|..|.+..+.+..+++++++
T Consensus 8 p~RLN~e--PvV~rGlT~~El~~~a~~~~~~g~~~g 41 (121)
T PF11990_consen 8 PDRLNRE--PVVFRGLTADELGLAAGVGFVAGLVVG 41 (121)
T ss_pred hhhhcCC--CCeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4666653 445556777887666655555554433
Done!