Query 017235
Match_columns 375
No_of_seqs 318 out of 1951
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 43.9 12 0.0004 35.2 2.7 45 271-315 205-260 (297)
2 3lsn_A Geranyltranstransferase 39.4 8 0.00027 36.5 0.7 45 271-315 212-267 (304)
3 3lom_A Geranyltranstransferase 38.0 8.5 0.00029 36.5 0.7 44 272-315 220-274 (313)
4 3ts7_A Geranyltranstransferase 35.7 8.2 0.00028 36.8 0.2 44 272-315 219-273 (324)
5 3p8r_A Geranyltranstransferase 32.7 9.8 0.00033 35.9 0.2 42 273-314 220-272 (302)
6 4f62_A Geranyltranstransferase 31.9 12 0.0004 35.7 0.5 44 272-315 212-266 (317)
7 3p8l_A Geranyltranstransferase 31.7 11 0.00039 35.4 0.4 43 272-314 216-269 (302)
8 3llw_A Geranyltranstransferase 29.4 18 0.00061 34.2 1.4 44 271-314 219-271 (311)
9 3kra_B Geranyl diphosphate syn 28.7 67 0.0023 29.6 5.2 43 276-318 74-116 (274)
10 2h8o_A Geranyltranstransferase 28.2 13 0.00045 35.5 0.2 42 273-314 253-305 (335)
11 3pde_A Farnesyl-diphosphate sy 27.7 27 0.00092 33.0 2.3 45 272-316 215-270 (309)
12 3uca_A Geranyltranstransferase 27.4 14 0.0005 35.1 0.3 42 273-314 242-294 (324)
13 1rtr_A Geranyltranstransferase 26.9 16 0.00055 34.3 0.5 43 272-314 208-261 (301)
14 1rqj_A Geranyltranstransferase 25.5 39 0.0013 31.5 3.0 42 273-314 214-266 (299)
15 2j1p_A Geranylgeranyl pyrophos 22.8 20 0.00067 33.5 0.3 40 272-314 223-262 (293)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=43.91 E-value=12 Score=35.24 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
..-...++++.+|+.|+.+ |.+.|+.|+|+++|.+++.....-+.
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3355677899999999865 66789999999999998887665443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=39.42 E-value=8 Score=36.53 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
..-+..++++.+|+.|+.+ |.+.|+.|+|+++|.+.++....-+.
T Consensus 212 g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 212 AQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3355677889999999866 66789999999999999887765443
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=38.03 E-value=8.5 Score=36.50 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=30.6
Q ss_pred HHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
.-...++++.+|+.|+.+ |.+.|+.|+|+++|.+.++....-+.
T Consensus 220 ~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 220 KHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 345667888889888865 66889999999999998887665443
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=35.69 E-value=8.2 Score=36.82 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=30.1
Q ss_pred HHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
--...++++..|+.|+.+ |.+.|+.|+|+++|.+.++....-..
T Consensus 219 ~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 273 (324)
T 3ts7_A 219 KCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 345567788888888754 67889999999999998887665443
No 5
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=32.70 E-value=9.8 Score=35.86 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 273 l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
-+..++++.+|+.|+.+ |.+.|+.|+|+++|.+.++....-.
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 44566788888887754 6788999999999999887766544
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=31.88 E-value=12 Score=35.66 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGLL 315 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l~ 315 (375)
--...++++..|+.|+.+ |.+.|+.|+|+++|.+.++....-..
T Consensus 212 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 266 (317)
T 4f62_A 212 HAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLH 266 (317)
T ss_dssp HHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 345667788888888754 67889999999999999888765443
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=31.67 E-value=11 Score=35.43 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
--+..++++.+|+.|+. .|.+.|+.|+|+++|.+++.....-+
T Consensus 216 ~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~ 269 (302)
T 3p8l_A 216 HHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQ 269 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34556678888888874 57888999999999999998776544
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=29.39 E-value=18 Score=34.22 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHccCCChHHhH---------hCCCCcceeeechhHHHHHHHHH
Q 017235 271 VTLFALVIAVTKDLPDVEGDR---------KFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 271 ~~l~~~~~~i~~di~D~egDr---------~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
.--+..++++.+|+.|+.+|. +.|+.|+|+++|.+++.....-+
T Consensus 219 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~ 271 (311)
T 3llw_A 219 GLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTL 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 334566788999999998775 67999999999999887765544
No 9
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=28.70 E-value=67 Score=29.55 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=30.3
Q ss_pred HHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235 276 LVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318 (375)
Q Consensus 276 ~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a 318 (375)
.+..+-.|+++.++|.+.|++|.=..+|+..+....-.++..+
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~A 116 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFG 116 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 3345678999445566899999999999997765554444333
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=28.21 E-value=13 Score=35.50 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 273 l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
-..+++++.+|+.|+.+ |.+.|+.|+|+.+|.+.+.....-.
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~ 305 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 45567788888888754 6778999999999988777665533
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=27.73 E-value=27 Score=32.97 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=33.5
Q ss_pred HHHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGLLL 316 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~l~~~l~l 316 (375)
.-...++++..|+.|+. .|.+.|+.|+|+++|.+++.....-+.-
T Consensus 215 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~ 270 (309)
T 3pde_A 215 DAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIH 270 (309)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHH
Confidence 34556778888988885 4778899999999999988776654433
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=27.41 E-value=14 Score=35.09 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 273 l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
-...++++.+|+.|+. .|.+.|+.|+|+.+|.++++....-+
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~ 294 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNI 294 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHH
Confidence 4556678888888874 47788999999999999887766544
No 13
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=26.91 E-value=16 Score=34.30 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
.-+..++++.+|+.|+.+ |.+.|+.|+|+++|.+.++....-.
T Consensus 208 ~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~ 261 (301)
T 1rtr_A 208 YHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYH 261 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 345667888999988865 5667999999999998887765543
No 14
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=25.52 E-value=39 Score=31.50 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=31.7
Q ss_pred HHHHHHHHHccCCChHH-----------hHhCCCCcceeeechhHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 273 l~~~~~~i~~di~D~eg-----------Dr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
-+..++++.+|+.|+.+ |.+.|+.|+|+.+|.+.+.....-.
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 266 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45566788888888764 5677999999999998776655433
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=22.80 E-value=20 Score=33.51 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
--...++++.+|+.|+.+|. +.|+|+++|.+.++....-.
T Consensus 223 ~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 223 RCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 34566789999999999998 89999999998887765533
Done!