Query 017235
Match_columns 375
No_of_seqs 318 out of 1951
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 11:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017235.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017235hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 75.8 1.8 0.00013 38.2 5.9 37 273-309 208-255 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 24.9 8.1 0.00059 33.8 0.4 41 272-312 213-264 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 23.8 23 0.0017 30.6 3.4 47 273-319 75-122 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 18.6 32 0.0023 29.5 3.1 44 275-318 74-118 (290)
5 d2q80a1 a.128.1.1 (A:6-296) Ge 11.8 17 0.0012 31.4 -0.9 48 140-192 49-96 (291)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 9.8 17 0.0012 32.3 -1.7 33 273-305 229-271 (348)
7 d1v4ea_ a.128.1.1 (A:) Octopre 8.2 53 0.0038 27.9 1.1 45 273-318 64-108 (280)
8 d2q80a1 a.128.1.1 (A:6-296) Ge 5.8 86 0.0063 26.5 1.2 45 273-318 50-94 (291)
9 d1ezfa_ a.128.1.2 (A:) Squalen 5.0 1E+02 0.0074 26.7 1.1 27 274-300 170-196 (333)
10 d1fpsa_ a.128.1.1 (A:) Farnesy 4.6 1.6E+02 0.012 25.3 2.3 39 275-314 91-129 (348)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=75.80 E-value=1.8 Score=38.16 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHH
Q 017235 273 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAF 309 (375)
Q Consensus 273 l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~ 309 (375)
-...++++.+|+.|.. .|.+.|+.|+|+.+|.+.+..
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 4556788889988876 466789999999999877644
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=24.90 E-value=8.1 Score=33.82 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred HHHHHHHHHHccCCChH-----------HhHhCCCCcceeeechhHHHHHHH
Q 017235 272 TLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGS 312 (375)
Q Consensus 272 ~l~~~~~~i~~di~D~e-----------gDr~~Gi~TLpv~lG~~~a~~l~~ 312 (375)
.-+..++++..|+-|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 34566788888888875 377889999999999987765443
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=23.79 E-value=23 Score=30.59 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=34.5
Q ss_pred HHHHHHHHHccCCChHH-hHhCCCCcceeeechhHHHHHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEG-DRKFKISTLATKLGVKNIAFLGSGLLLLNY 319 (375)
Q Consensus 273 l~~~~~~i~~di~D~eg-Dr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~ 319 (375)
+.-.+..+-.|++|.+. |.+.|.+|.-..+|...+....-.++..++
T Consensus 75 llH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 75 CIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 33444456779999887 589999999999999988666655544443
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=18.58 E-value=32 Score=29.48 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHHccCCChHHh-HhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235 275 ALVIAVTKDLPDVEGD-RKFKISTLATKLGVKNIAFLGSGLLLLN 318 (375)
Q Consensus 275 ~~~~~i~~di~D~egD-r~~Gi~TLpv~lG~~~a~~l~~~l~l~a 318 (375)
-.+..+-.|++|+++| .+.|.+|.-..+|...+....-.++..+
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a 118 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKA 118 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHH
Confidence 3444567799988775 6999999999999998866655444333
No 5
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.77 E-value=17 Score=31.44 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=29.2
Q ss_pred HHHHHhhhhhhccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHH
Q 017235 140 ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLL 192 (375)
Q Consensus 140 ~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~ 192 (375)
=+++.+.-+ .+|+.|-+.= +|.+|-...+.....|...+-.++..++-
T Consensus 49 EllH~asLi--hDDi~D~~~~---RRg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 49 EMLHNASLL--IDDIEDNSKL---RRGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHH--HHHHHHTCSE---ETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hcccccCccc---ccCCCccccccchhhhhhHHHHHHHHHHH
Confidence 466777777 8999765533 34455555556666666666555554543
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.84 E-value=17 Score=32.33 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHHHHHccCCChHH----------hHhCCCCcceeeechh
Q 017235 273 LFALVIAVTKDLPDVEG----------DRKFKISTLATKLGVK 305 (375)
Q Consensus 273 l~~~~~~i~~di~D~eg----------Dr~~Gi~TLpv~lG~~ 305 (375)
-+..++++.+|+.|+.+ |.+.|++|+|+.+..+
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 45667788888888754 7778999999999764
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=8.22 E-value=53 Score=27.89 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a 318 (375)
++-.+..+..|+.| ++|.+.|.+|.-..+|...+....-.++..+
T Consensus 64 liH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 64 LVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 44445556778887 5678999999999999998766555444333
No 8
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=86 Score=26.50 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235 273 LFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318 (375)
Q Consensus 273 l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a 318 (375)
+.-.+..+-.|+.| ++|.+.|..|.=..+|...+....-.++..+
T Consensus 50 llH~asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a 94 (291)
T d2q80a1 50 MLHNASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYVYFLG 94 (291)
T ss_dssp HHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccc-CcccccCCCccccccchhhhhhHHHHHHHHH
Confidence 44444555667765 3467889999999999997766555444433
No 9
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=1e+02 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=23.2
Q ss_pred HHHHHHHHccCCChHHhHhCCCCccee
Q 017235 274 FALVIAVTKDLPDVEGDRKFKISTLAT 300 (375)
Q Consensus 274 ~~~~~~i~~di~D~egDr~~Gi~TLpv 300 (375)
+..+.+++|=++|+.+|.+.|+.-+|.
T Consensus 170 lG~AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 170 MGLFLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHHHHhhHHHHhCCcEECCH
Confidence 345678889999999999999999985
No 10
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.56 E-value=1.6e+02 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHH
Q 017235 275 ALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 314 (375)
Q Consensus 275 ~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l 314 (375)
-.+..+-.|+.| ++|.+.|..|+-..+|...+....-.+
T Consensus 91 H~asLihDDi~D-~~~~RRG~pt~~~~~g~~~ail~gd~l 129 (348)
T d1fpsa_ 91 QAFFLVADDIMD-QSLTRRGQLCWYKKEGVGLDAINDSFL 129 (348)
T ss_dssp HHHHHHHHHHTT-TCCEETTEECTTTSTTTTTTHHHHHHH
T ss_pred HHHHHHhCcccc-CCccccccchhhhhccccHHHHHHHHH
Confidence 334445568876 457789999999999998775554433
Done!