BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017236
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 170/316 (53%), Gaps = 10/316 (3%)
Query: 61 DDALFADYKPTNAFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPK 120
++ F + LFPGQG+Q VGMG+ + P ELY A +LG+DLLE+ +GP+
Sbjct: 16 ENLYFQSMGQCSVLLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQ 75
Query: 121 EKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFE 180
E LD T+ QPAI+V SLAAVE L +I++ G S+GE+ AL FAGA F
Sbjct: 76 ETLDRTVHCQPAIFVASLAAVEKLHHLQ--PSVIENCVAAAGFSVGEFAALVFAGAMEFA 133
Query: 181 DGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIAN 236
+GL VK+R AMQEA++A M+S++G K C A + E+ +++N
Sbjct: 134 EGLYAVKIRAEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSN 193
Query: 237 YLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQ 296
YL P +SG + + ++ + F R T L V+GAFHT MEPAV L AL A
Sbjct: 194 YLFPDCRVISGHQEALRFLQKNSSKFHFRRTRMLPVSGAFHTRLMEPAVEPLTQALKAVD 253
Query: 297 INTPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXX----XXSYELG 352
I P + V SNV + P I K+LAQQ+ SPV+WE ++E+G
Sbjct: 254 IKKPLVSVYSNVHGHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVG 313
Query: 353 PGKVIAGIVKRLDKSA 368
PG+ + I+K + A
Sbjct: 314 PGRQLGAILKSCNMQA 329
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 7/303 (2%)
Query: 73 AFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF FPGQG+Q +GMGK + AA ++++ +D L L +I GP + L T +QP
Sbjct: 8 AFTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQP 67
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + ++ G + V G SLGEY+AL AG FS D +L+++RG
Sbjct: 68 ALMAVSMAVIRVMEQL--GLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGN 125
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
AMQ A +G+M ++IGLD V+++C+ V E+ QIAN G +SG K
Sbjct: 126 AMQAAVAVGEGSMAALIGLDEKDVEEICEI----VAEEGLCQIANDNGGGQIVISGEAKA 181
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
+E A A+ V L V+ FH+ M+PA + ++ AL P +P+I+NV
Sbjct: 182 VETAVEVASQKGAKRAVLLPVSAPFHSALMQPAANAMKNALLTVNKTAPIVPLIANVSVI 241
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEME 371
P +DPE I +L QQVT V+W +E+G GKV+ G+ +R++K +
Sbjct: 242 PESDPERIVSLLVQQVTGRVRWRETIEWISANGVNTLFEIGSGKVLTGLARRINKDIKAL 301
Query: 372 NIG 374
+G
Sbjct: 302 TVG 304
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 10/293 (3%)
Query: 73 AFLFPGQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 5 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 64
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 65 ALLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGK 119
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 120 FMQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEA 175
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
+E A K+ A+ + L V+ H M+PA +L LA N P +PV++NVD +
Sbjct: 176 VERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVK 235
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 364
+ + I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 236 CETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRI 288
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 10/293 (3%)
Query: 73 AFLFPGQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 4 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 63
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 64 ALLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGK 118
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 119 FMQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEA 174
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
+E A K+ A+ + L V+ H M+PA +L LA N P +PV++NVD +
Sbjct: 175 VERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVK 234
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 364
+ + I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 235 CETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRI 287
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 148/293 (50%), Gaps = 9/293 (3%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 132
AF+FPGQG+Q+VGM V E +A+D LG D+ ++ +GP ++L+ T +QP
Sbjct: 12 AFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPV 71
Query: 133 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 192
+ + A + G Q + G SLGEYTAL AGA +F D L LV+ R A
Sbjct: 72 MLTAAYACYRAWQQAGGAQP-----SIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQA 126
Query: 193 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
MQ A G M +I+GLD D V+ +C E V+ N+ P ++G GI
Sbjct: 127 MQTAVPVGVGGMAAILGLDDDTVRAVC----AEASATGVVEAVNFNAPAQVVIAGTKAGI 182
Query: 253 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 312
E AK A+ + L V+ FH+ ++PA +L LA + P++ V++N+D
Sbjct: 183 EKACEIAKEKGAKRALPLPVSAPFHSSLLKPASDKLREYLAGVDVKAPKISVVNNIDVAV 242
Query: 313 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLD 365
+DP IK L +Q PV+W E GPGKV+AG+ KR+D
Sbjct: 243 VSDPAAIKDALVRQAAGPVRWVECVQHIAREGVTHVIECGPGKVLAGLTKRID 295
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 168/301 (55%), Gaps = 12/301 (3%)
Query: 74 FLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 132
FLF GQGAQ VGMGKE + + E++K++++ LG D+ E+C N P+ L+ T +QPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 133 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 192
I T++A +L A D ++ ++CGLSLGEY+AL +GA +FEDG+KLVK RG
Sbjct: 66 IITTNMA---ILTALD---KLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKF 119
Query: 193 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
MQEA G MV+++ + ++V ++ + ++ V+ ANY PG +SG + +
Sbjct: 120 MQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPY----GIVEGANYNSPGQIVISGELVAL 175
Query: 253 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 312
E K R ++L V+ FH ++PA +LE L IN V+SNV +
Sbjct: 176 EKAMEFIKEVGGR-AIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEA 234
Query: 313 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEMEN 372
+ + + I ++L QV PV + E+GPGK ++G VK+++K+ + N
Sbjct: 235 YLEDDNIIELLTSQVKKPVLFINDIEKMIESGVDTFIEIGPGKALSGFVKKINKNVTVLN 294
Query: 373 I 373
+
Sbjct: 295 V 295
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 12/299 (4%)
Query: 71 TNAFLFPGQGAQAVGMGKEAQSV-PAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
T AF+FPGQG+Q++GM E + P E + +A++ G DL + GP+E L+ T +
Sbjct: 5 TLAFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYT 64
Query: 130 QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 189
QPA+ +A L A+ G + + G SLGEYTAL AG S DG LV+LR
Sbjct: 65 QPALLAAGVAVWRLWTAQRGQRPAL-----LAGHSLGEYTALVAAGVLSLHDGAHLVRLR 119
Query: 190 GAAMQEAADAAKGAMVSIIGLDSDKVQQLC-DAANQEVDEDNKVQIANYLCPGNYAVSGG 248
G MQ AA A GAM +++G + V ++C +AA +V V AN+ PG + G
Sbjct: 120 GQFMQAAAPAGVGAMAAVLGAEDAVVLEVCAEAAGSQV-----VVPANFNSPGQIVIGGD 174
Query: 249 VKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNV 308
++ A R V+LAV+ HT M A ++L A+A + P++PV+ NV
Sbjct: 175 AAAVDRALALLAERGVRKAVKLAVSVPSHTPLMRDAANQLGEAMAGLSWHAPQIPVVQNV 234
Query: 309 DAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKS 367
DA+ H I++ L +Q+ PVQW E GPGKV++G++KR+DKS
Sbjct: 235 DARVHDGSAAIRQALVEQLYLPVQWTGCVQALASQGITRIAECGPGKVLSGLIKRIDKS 293
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 161/302 (53%), Gaps = 12/302 (3%)
Query: 73 AFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A +FPGQGAQ VGM ++ + A E+ A L FD+LE + KL T +QP
Sbjct: 13 AIIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQP 72
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S A + L+ + D T G SLGEY++L A SFED +K+V+ RG
Sbjct: 73 ALLTHSSALLAALKNLNP--------DFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQ 124
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
M +A G+M +++GLD DKV ++C + + + D ++ AN CPG VSG
Sbjct: 125 LMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSD---DKIIEPANINCPGQIVVSGHKAL 181
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
I+ + K KS A+ + LAV+G FH+ M+ + + + + PV+ NV+AQ
Sbjct: 182 IDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQ 241
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEME 371
D EVIK + +Q+ SPVQ+ E+GPGKV++G++K++++ ++
Sbjct: 242 GETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLT 301
Query: 372 NI 373
+I
Sbjct: 302 SI 303
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 12/300 (4%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q +G + + P E +++A+ L +DL + +GP+E+LD T +QP
Sbjct: 9 AFVFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQP 68
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ +A A G + V G SLGEY AL AGA FE+ +KLV+ RG
Sbjct: 69 ALLTADVAIFRCWEALGGPKP-----QVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQ 123
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCD-AANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
QEA +GA +IIGL+ +++ +C+ AA +V VQ AN +SG +
Sbjct: 124 YXQEAVPVGEGAXGAIIGLNEAEIESICENAALGQV-----VQPANLNSTDQTVISGHSE 178
Query: 251 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 310
++ AK+ A++ R+ V+ H +PA RL +A I++P++PVI NVD
Sbjct: 179 AVDRALNXAKTEGAKIAKRIPVSVPSHCPLXQPAADRLAQDIAKISIDSPKVPVIHNVDV 238
Query: 311 QPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEM 370
H + +I+ L +Q+ PV+W E GP +AG++KR+D+ +E+
Sbjct: 239 VDHNEANIIRGALIKQLVRPVRWVETIKYIEEQGIKVFXECGPDNKLAGLIKRIDRQSEI 298
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 13/303 (4%)
Query: 72 NAFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
AFLF GQGAQ +GMG++ P E +A+ +LG+DL + ++KL+ T +Q
Sbjct: 4 TAFLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDL-RYLIDTEEDKLNQTRYTQ 62
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PAI TS+A LL+ + G Q D+ GLSLGEY+AL +GA FED + LV RG
Sbjct: 63 PAILATSVAIYRLLQEK--GYQ----PDMVAGLSLGEYSALVASGALDFEDAVALVAKRG 116
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
A M+EAA A G MV+++ + +++ C Q+ E V ANY P ++G V
Sbjct: 117 AYMEEAAPADSGKMVAVLNTPVEVIEEAC----QKASELGVVTPANYNTPAQIVIAGEVV 172
Query: 251 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 310
++ + A+ + L V+G FHT +EPA +L LA + P++ N +A
Sbjct: 173 AVDRAVELLQEAGAKRLIPLKVSGPFHTSLLEPASQKLAETLAQVSFSDFTCPLVGNTEA 232
Query: 311 QPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEM 370
E I ++L +QV PV++ E+GPGKV++G VK++D++A +
Sbjct: 233 AVM-QKEDIAQLLTRQVKEPVRFYESIGVMQEAGISNFIEIGPGKVLSGFVKKIDQTAHL 291
Query: 371 ENI 373
++
Sbjct: 292 AHV 294
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 10/293 (3%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q+VG + + A + P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 8 AFVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 67
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG +F D ++LV+ RG
Sbjct: 68 ALLTASVALWRVWQQQGGKXPALXA-----GHSLGEYSALVCAGVINFADAVRLVEXRGK 122
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
QEA G +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 123 FXQEAVPEGTGGXSAIIGLDDASIAKACE----ESAEGQVVSPVNFNSPGQVVIAGHKEA 178
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
+E A K+ A+ + L V+ H +PA +L LA + P +PV++NVD +
Sbjct: 179 VERAGAACKAAGAKRALPLPVSVPSHCALXKPAADKLAVELAKITFSAPTVPVVNNVDVK 238
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 364
D I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 239 CETDAAAIRDALVRQLYNPVQWTKSVEFIAAQGVEHLYEVGPGKVLTGLTKRI 291
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 155/299 (51%), Gaps = 17/299 (5%)
Query: 73 AFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A LFPGQG+ VGMG+ ++ PAA E+ +A L LL++ GP+E L T QP
Sbjct: 3 AALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQP 61
Query: 132 AIYVTSLAAVE-LLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
A+ AA L A GG+ + G SLGE+TA AG ED L+LV+LRG
Sbjct: 62 ALLAAGYAAYRAFLEA--GGK----PPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRG 115
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
MQEA +GAM +++ L +++Q+ + V+IAN P +SG +
Sbjct: 116 RYMQEAVPVGEGAMAAVLKLPLEEIQKALEGLE-------GVEIANLNAPEQTVISGRRQ 168
Query: 251 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 310
+E + K +AR+ V L V+ FH+ M PA RL LA + PR PV SNV A
Sbjct: 169 AVEEAAERLKERRARV-VFLPVSAPFHSSLMAPARKRLAEDLAQVPLRRPRFPVYSNVTA 227
Query: 311 QPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 369
+P DPE I+ +L +Q+T+PV+W E G G+V+ G+V R K AE
Sbjct: 228 RPEEDPERIRALLLEQITAPVRWVEILRDMEARGVKRFLEFGSGEVLKGLVLRTLKEAE 286
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 153/298 (51%), Gaps = 10/298 (3%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A +FPGQG+QAVG + A+ + + +A+++LG+DL + +GP E L+ T +QP
Sbjct: 10 AIVFPGQGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQP 69
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + Q ++ V G SLGEY+AL AG F+ +KLV+LRG
Sbjct: 70 ALLAASVAIWRVWQ-----QLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRGQ 124
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
Q+A A GA +IIGL+ + + + C A Q V N+ PG ++G
Sbjct: 125 LXQQAVPAGTGAXYAIIGLEDEAIAKACADAAQ----GEVVSPVNFNSPGQVVIAGQKDA 180
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
+E K A+ + L V+ H +PA L LA + N P++PVI+NVD
Sbjct: 181 VERAGVLCKEAGAKRALPLPVSVPSHCALXKPAADELAKTLAELEFNAPQIPVINNVDVV 240
Query: 312 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 369
DP IK L +Q+ SPV+W E GPGKV+ G+ KR+ K+ E
Sbjct: 241 AETDPVKIKDALIRQLYSPVRWTECVEQXSAQGVEKLIEXGPGKVLTGLTKRIVKTLE 298
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 155/299 (51%), Gaps = 19/299 (6%)
Query: 72 NAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
A++FPGQG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +Q
Sbjct: 2 KAYMFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQ 58
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PA+YV + A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG
Sbjct: 59 PALYVVN--ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG 112
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
M DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 113 ELM---GDARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISGAKD 164
Query: 251 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 310
I ++ ++ A+ L V+ AFH+ FM PA+ L P++PVISNV A
Sbjct: 165 EIARLQVPFEAAGAKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTA 224
Query: 311 QPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 369
+P + I+ L++Q+ SPV+W E G G V+ G+ ++ + A+
Sbjct: 225 RP-CKADGIRAALSEQIASPVRWCESIRYLMGRGVEEFVECGHGIVLTGLYAQIRRDAQ 282
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 154/298 (51%), Gaps = 19/298 (6%)
Query: 72 NAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
A++FPGQG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +Q
Sbjct: 2 KAYMFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQ 58
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PA+YV + A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG
Sbjct: 59 PALYVVN--ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG 112
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
M DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 113 ELM---GDARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISGAKD 164
Query: 251 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 310
I ++ ++ A+ L V+ AFH+ FM PA+ L P++PVISNV A
Sbjct: 165 EIARLQVPFEAAGAKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTA 224
Query: 311 QPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSA 368
+P + I+ L++Q+ SPV+W E G G V+ G+ ++ + A
Sbjct: 225 RP-CKADGIRAALSEQIASPVRWCESIRYLMGRGVEEFVECGHGIVLTGLYAQIRRDA 281
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 143/262 (54%), Gaps = 17/262 (6%)
Query: 72 NAFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
N F+FPGQG+QA GMG A+L +A+ +LG+ + +C + P+++L T +QP
Sbjct: 7 NTFMFPGQGSQAKGMG--GALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQP 64
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+YV + A + D G+ + D G SLGE+ AL AG F FE GLKLV R
Sbjct: 65 ALYVVN-ALTYYAKCEDSGE----TPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAE 119
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
M +A D GAM +I+ +++++ D + VD IAN P +SG
Sbjct: 120 LMSQARD---GAMAAIVNASREQIERTLD-EHGLVD----TAIANDNTPSQLVISGPAHE 171
Query: 252 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 311
I EA + + R +RL +GAFH+ FM PA A L + ++ P +PVISNV A+
Sbjct: 172 IARAEALFQHDRVRY-LRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSAR 230
Query: 312 PHADPEVIKKILAQQVTSPVQW 333
P+ + V + LAQQ+ SPV+W
Sbjct: 231 PYENGRVSEG-LAQQIASPVRW 251
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 17/295 (5%)
Query: 73 AFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A LFPGQG+Q +GMGK + A EL+++A++ L D+ + E L + +QP
Sbjct: 16 ALLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFE-ENELLKESAYTQP 74
Query: 132 AIYVTSLAAVELLRAR-DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
AIY+ S A +LL + +GG + + ++ G SLGE +A++ +GA FE LKL RG
Sbjct: 75 AIYLVSYIAYQLLNKQANGGLKPVFAL----GHSLGEVSAVSLSGALDFEKALKLTHQRG 130
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
MQEA +M+ ++G+ + + LC V AN+ G V GVK
Sbjct: 131 KMMQEACANKDASMMVVLGVSEESLLSLCQRTKN-------VWCANF-NGGMQVVLAGVK 182
Query: 251 -GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVD 309
++A+E K A+ V L ++ A H F+EP + + + L + + +ISN
Sbjct: 183 DDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMIFKFQELLEKSLKDKFHFEIISNAT 242
Query: 310 AQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 364
+ + + ++L+ Q+T PV+++ +ELG G V+ G+ KRL
Sbjct: 243 NEAYHNKAKAVELLSLQLTQPVRYQDCVKSNNDRVDIF-FELGCGSVLKGLNKRL 296
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 127/291 (43%), Gaps = 18/291 (6%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 63
Query: 134 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 193
L A +L A G G S+GE TA FAG L LV+ RG AM
Sbjct: 64 ----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAM 117
Query: 194 QEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
EAA + M +++G D + V L E + AN G +G ++ +
Sbjct: 118 AEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAGQIVAAGTMEQL 168
Query: 253 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 312
A+ + K R V L VAGAFHT M PAV +L A A P++ +SN D +
Sbjct: 169 AALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRA 227
Query: 313 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 363
A + L QV +PV+W+ E+ PG + G+ KR
Sbjct: 228 VASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR 278
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 127/291 (43%), Gaps = 18/291 (6%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 4 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 62
Query: 134 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 193
L A +L A G G S+GE TA FAG L LV+ RG AM
Sbjct: 63 ----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAM 116
Query: 194 QEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
EAA + M +++G D + V L E + AN G +G ++ +
Sbjct: 117 AEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAGQIVAAGTMEQL 167
Query: 253 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 312
A+ + K R V L VAGAFHT M PAV +L A A P++ +SN D +
Sbjct: 168 AALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRA 226
Query: 313 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 363
A + L QV +PV+W+ E+ PG + G+ KR
Sbjct: 227 VASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR 277
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 131/299 (43%), Gaps = 24/299 (8%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 63
Query: 134 YVTSLAAVELLRARDGGQQ--IIDSVD------VTCGLSLGEYTALAFAGAFSFEDGLKL 185
L A +L A G Q + D+ G S+GE TA FAG L L
Sbjct: 64 ----LVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSL 119
Query: 186 VKLRGAAMQEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPGNYA 244
V+ RG AM EAA + M +++G D + V L E + AN G
Sbjct: 120 VRRRGLAMAEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAGQIV 170
Query: 245 VSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPV 304
+G ++ + A+ + K R V L VAGAFHT M PAV +L A A P++
Sbjct: 171 AAGTMEQLAALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTY 229
Query: 305 ISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 363
+SN D + A + L QV +PV+W+ E+ PG + G+ KR
Sbjct: 230 VSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR 288
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
A L PGQG+Q GM +P AA+ + KA D+ DL + T E++ T ++
Sbjct: 4 ALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVA 60
Query: 130 QPAIYVTSLAAVELL--RARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVK 187
QP I +L A + L R G+ +I G S+GE A A AG + +D + L
Sbjct: 61 QPLIVAATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAA 115
Query: 188 LRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 247
RGA M +A M +++G D +V +++D L P N +G
Sbjct: 116 TRGAEMAKACATEPTGMSAVLGGDETEVLSRL----EQLD----------LVPANRNAAG 161
Query: 248 GVKG---IEAVEAKAKSFKARMTVR-LAVAGAFHTGFMEPAVSRLEAALAATQINTPRMP 303
+ + A+E A+ A+ VR L VAGAFHT FM PA+ AA A P
Sbjct: 162 QIVAAGRLTALEKLAEDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTAT 221
Query: 304 VISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 363
++SN D +P L Q+T PV+W+ E P ++GI KR
Sbjct: 222 LLSNRDGKPVTSAAAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKR 281
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
A L PGQG+Q GM +P AA+ + KA D+ DL + T E++ T ++
Sbjct: 23 ALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVA 79
Query: 130 QPAIYVTSLAAVELL--RARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVK 187
QP I +L A + L R G+ +I G S+GE A A AG + +D + L
Sbjct: 80 QPLIVAATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAA 134
Query: 188 LRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 247
RGA M +A M +++G D +V +++D L P N +G
Sbjct: 135 TRGAEMAKACATEPTGMSAVLGGDETEVLSRL----EQLD----------LVPANRNAAG 180
Query: 248 GVKG---IEAVEAKAKSFKARMTVR-LAVAGAFHTGFMEPAVSRLEAALAATQINTPRMP 303
+ + A+E A+ A+ VR L VAGAFHT FM PA+ AA A P
Sbjct: 181 QIVAAGRLTALEKLAEDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTAT 240
Query: 304 VISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 363
++SN D +P L Q+T PV+W+ E P ++GI KR
Sbjct: 241 LLSNRDGKPVTSAAAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKR 300
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 238
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 194 ADDTLALARARGEAMSAATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 246
Query: 239 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 298
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 247 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 302
Query: 299 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 358
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 303 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 358
Query: 359 GIVKRLDKSA 368
+ + ++A
Sbjct: 359 ALAEAAGRTA 368
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 138 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 190
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 238
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 191 ADDTLALARARGEAMSAATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 243
Query: 239 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 298
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 244 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 299
Query: 299 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 358
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 300 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 355
Query: 359 GIVKRLDKSA 368
+ + ++A
Sbjct: 356 ALAEAAGRTA 365
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 238
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 194 ADDTLALARARGEAMSVATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 246
Query: 239 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 298
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 247 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 302
Query: 299 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 358
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 303 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 358
Query: 359 GIVKRLDKSA 368
+ + ++A
Sbjct: 359 ALAEAAGRTA 368
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 31/214 (14%)
Query: 70 PTNAFLFPGQGAQAVGMGKEAQS-VPAAAELYKKAN----DILGFDLLEICTNGPKEKLD 124
P + FPGQG Q GMG E ++ AA +++ A+ + LGF +L + + P +
Sbjct: 1346 PKTVYAFPGQGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIA 1405
Query: 125 STI-ISQP--AIYVT--------SLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA- 172
S + P +++T ++AA ++ R+ G + + + CG S+GEYTALA
Sbjct: 1406 SGVHYHHPDGVLFLTQFTQVAMATVAAAQVAEMREQGAFVEGA--IACGHSVGEYTALAC 1463
Query: 173 FAGAFSFEDGLKLVKLRGAAMQEAADAAK---------GAMVSIIGLDSDKVQQLCDAAN 223
+G + E L++V RG+ M + + S I LD V+ +
Sbjct: 1464 VSGVYELEALLEVVFHRGSKMHDIVPRDELGRSNYRLAAIRPSQIDLDDADVKDFVAEIS 1523
Query: 224 QEVDEDNKVQIANYLCPGN-YAVSGGVKGIEAVE 256
+ E ++I N+ G+ YA++G V G+EA+E
Sbjct: 1524 ERTGE--FLEIVNFNLRGSQYAIAGTVAGLEALE 1555
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 26/267 (9%)
Query: 74 FLFPGQGAQAVGMGKEA--QSVPAAAELYK---KANDILGFDLLEICTNGPKEKLDSTII 128
++ G GAQ MGK ++ AA + K D LG+ +LE+ + ++ T
Sbjct: 143 WVLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDYGIET-- 200
Query: 129 SQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKL 188
+Q I+ +A ELLR + G SLGE + FAG S D + +
Sbjct: 201 TQVTIFAIQIALGELLRHHGAKPAAV------IGQSLGEAASAYFAGGLSLRDATRAICS 254
Query: 189 RGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGG 248
R M E G + ++ L V+ D + + +++ Y P + G
Sbjct: 255 RSHLMGEGEAMLFGEYIRLMAL----VEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGP 310
Query: 249 VKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNV 308
+ ++A+ A+A++ + + + A GA HT M+P + L A L + +P + S V
Sbjct: 311 PEQVDAILARAEA-EGKFARKFATKGASHTSQMDPLLGELTAELQGIKPTSPTCGIFSTV 369
Query: 309 D--------AQPHADPEVIKKILAQQV 327
+P D E KK L V
Sbjct: 370 HEGRYIKPGGEPIHDVEYWKKGLRHSV 396
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 74 FLFPGQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDS 125
FLFPGQG+Q GMG E A + A E D D+L P LD
Sbjct: 536 FLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAP--GLDR 593
Query: 126 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 185
+ QP ++ ++ EL R+ ++ V G S GE A AGA + ED KL
Sbjct: 594 VDVVQPVLFAVMVSLAELWRSYG-----VEPAAV-VGHSQGEIAAAHVAGALTLEDAAKL 647
Query: 186 VKLRGAAMQEAADAAKGAMVSI 207
V R M+ + +G M ++
Sbjct: 648 VVGRSRLMRSL--SGEGGMAAV 667
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 63/187 (33%)
Query: 69 KPTNAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKAN----DILGFDLLEICTNGP---- 119
+P F+F GQG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1659 QPVTTFVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1718
Query: 120 -------------------------------------------------KEKLDSTIISQ 130
K L +T +Q
Sbjct: 1719 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1778
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLR 189
PA+ + AA E L+++ +I + G SLGEY ALA A S E +++V R
Sbjct: 1779 PALTLMEKAAFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1834
Query: 190 GAAMQEA 196
G MQ A
Sbjct: 1835 GMTMQVA 1841
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 69 KPTNAFLFPGQGAQAVGMGKEAQSV-PAAAELYKKAN----DILGFDLLEICTNGPKE 121
+P A++F GQG+Q GMG + + P A E++ +A+ + GF +++I N PKE
Sbjct: 1669 QPVTAYVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKE 1726
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 188 LRGAAMQEAADAAKGA---MVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYA 244
L + +Q++ + +G M+SI L VQ+ DA NQ + ED + I+ N+
Sbjct: 313 LAPSTLQDSVENGEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFV 372
Query: 245 VSG-------------GVKGIEAVEAKAKSF---KARMTVR-LAVAGAFHTGFMEPAVSR 287
V+G VK ++ F KAR R L + FH+ ++ A +
Sbjct: 373 VTGPPISLYGLNLRLRKVKAPTGLDQNRIPFTQRKARFVNRFLPITAPFHSPYLAGAHAH 432
Query: 288 L-----EAALAATQINTPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWE 334
+ + + A+ + P + D + D ++I +++ PV WE
Sbjct: 433 ILGDVDDMKIPASSLVIPVYDTKTGQDLRELGDEDIIPELVRMITYDPVNWE 484
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 33/250 (13%)
Query: 73 AFLFPGQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLD 124
A +FPGQGAQ G ++ A S+ D DLL +G + LD
Sbjct: 554 AXVFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDLL----SGAR-PLD 608
Query: 125 STIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLK 184
+ QPA++ ++ L R+ ++ V G S GE A AGA + ED K
Sbjct: 609 RVDVVQPALFAVXVSLAALWRSHG-----VEPAAV-VGHSQGEIAAAHVAGALTLEDAAK 662
Query: 185 LVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYA 244
LV +R ++ +G S GL +++ AA + + IA+ P +
Sbjct: 663 LVAVRSRVLRRL--GGQGGXAS-FGLGTEQ------AAERIGRFAGALSIASVNGPRSVV 713
Query: 245 VSGGVKGIEAV--EAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRM 302
V+G ++ + E +A++ KAR R+ V A H+ +E L LA + +
Sbjct: 714 VAGESGPLDELIAECEAEAHKAR---RIPVDYASHSPQVESLREELLTELAGISPVSADV 770
Query: 303 PVISNVDAQP 312
+ S QP
Sbjct: 771 ALYSTTTGQP 780
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 63/177 (35%)
Query: 79 QGAQAVGMGKEA-QSVPAAAELYKKAN----DILGFDLLEICTNGP-------------- 119
QG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 120 ---------------------------------------KEKLDSTIISQPAIYVTSLAA 140
K L +T +QPA+ + AA
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 141 VELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLRGAAMQEA 196
E L+++ +I + G SLGEY ALA A S E +++V RG MQ A
Sbjct: 1744 FEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
>pdb|3BBN|C Chain C, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 218
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 226 VDEDNKVQ--IANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEP 283
+ ED K++ I NY+ N S GV+GI +E + + ++ + H GF +
Sbjct: 33 LQEDQKIRDCIKNYV-QKNTKTSSGVEGIARIEIQKRIDLIQVII--------HMGFPKL 83
Query: 284 AVSRLEAALAATQINTPR--------MPVISNVDAQPHADPEVIKKILAQQVTSPV 331
+ + +IN + + + A+P+ DP ++ + +A Q+ S V
Sbjct: 84 LIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRV 139
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 255 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 314
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 93 VEDFWEAWKAVQLKKIPVXGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 148
Query: 315 DPE 317
DP+
Sbjct: 149 DPK 151
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 255 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 314
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 94 VEDFWEAWKAVQLKKIPVXGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 149
Query: 315 DPE 317
DP+
Sbjct: 150 DPK 152
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 255 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 314
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 112 VEDFWEAWKAVQLKKIPVMGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 167
Query: 315 DPE 317
DP+
Sbjct: 168 DPK 170
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 255 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 314
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 95 VEDFWEAWKAVQLKKIPVMGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 150
Query: 315 DPE 317
DP+
Sbjct: 151 DPK 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,435,738
Number of Sequences: 62578
Number of extensions: 351194
Number of successful extensions: 956
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 43
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)