Query 017238
Match_columns 375
No_of_seqs 121 out of 1074
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 1.1E-85 3.9E-90 657.4 46.9 362 5-375 43-435 (435)
2 1w63_M Adaptor-related protein 100.0 1.6E-85 5.4E-90 654.3 41.5 360 4-375 44-422 (423)
3 1i31_A Clathrin coat assembly 100.0 4.2E-69 1.4E-73 515.1 32.5 283 84-375 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.1E-65 3.8E-70 479.7 27.1 246 128-375 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 5.4E-63 1.8E-67 483.1 33.8 250 123-375 101-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 2E-62 6.8E-67 464.8 29.2 251 122-375 17-301 (301)
7 1w63_Q Adapter-related protein 99.9 3.1E-22 1.1E-26 172.3 10.1 99 5-103 45-143 (158)
8 2vgl_S AP-2 complex subunit si 99.8 5.1E-21 1.8E-25 161.9 10.3 94 5-98 45-139 (142)
9 3tjz_C Coatomer subunit zeta-1 99.8 1.6E-19 5.6E-24 154.0 11.6 93 7-99 57-150 (153)
10 3g9h_A Suppressor of yeast pro 99.1 9.8E-08 3.4E-12 89.5 28.8 202 138-352 67-301 (328)
11 4b93_A Vesicle-associated memb 89.8 0.89 3.1E-05 39.2 7.5 49 9-57 45-93 (189)
12 4afi_A AP-3 complex subunit de 89.8 0.94 3.2E-05 38.5 7.4 54 4-57 87-145 (173)
13 2vx8_A Nucleoporin-like protei 89.0 1.3 4.5E-05 37.4 7.8 49 9-57 87-135 (169)
14 2nut_C Vesicle-trafficking pro 85.4 2.7 9.3E-05 36.2 7.9 49 9-57 54-102 (196)
15 3kyq_A YKT6, synaptobrevin hom 78.2 5.2 0.00018 34.6 7.0 48 9-56 59-107 (199)
16 3bw6_A Synaptobrevin homolog Y 76.1 7.3 0.00025 31.8 7.0 48 9-56 62-110 (144)
17 3vjz_A DMP19, putative unchara 22.1 14 0.00049 30.8 -0.7 52 34-85 10-67 (166)
18 2wl8_A Peroxisomal biogenesis 20.4 2E+02 0.0068 22.7 5.7 41 42-84 66-108 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.1e-85 Score=657.44 Aligned_cols=362 Identities=27% Similarity=0.510 Sum_probs=319.8
Q ss_pred CCCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCccc
Q 017238 5 KSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPL 84 (375)
Q Consensus 5 ~~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p~ 84 (375)
+.+|+++.++++++|+++++|||+++++.+.|++++++|||++.++|++|||+++|+.|++||+.+|++||||+|+|+|+
T Consensus 43 ~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~ 122 (435)
T 2vgl_M 43 VRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQ 122 (435)
T ss_dssp CCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEEC
T ss_pred CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHhhhcCCCcchhcccccccCCCCCccCCCCCCCCcCCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEE
Q 017238 85 TTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEI 164 (375)
Q Consensus 85 ~t~~~~lk~~i~~~s~~~k~~~~~~g~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v 164 (375)
+|++++|++++.++++.+++... .+ +...|+++.+++|||+.|++|++|||||||+|+++++++++|.+++++|
T Consensus 123 ~t~~~~l~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV 196 (435)
T 2vgl_M 123 NSETGALKTFITQQGIKSQHQTK-EE-----QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHV 196 (435)
T ss_dssp CCCHHHHGGGCCCCCCCCC-----------------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEE
T ss_pred ecCHHHHHHHhcccccccccccc-cc-----ccccccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEE
Confidence 99999999999999987765311 11 1234456677899999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeCCCCeeEEEecCC---------------------cccccceecceeecCCCCCCceEEEeCCCCcEEEEE
Q 017238 165 YGEVQVNCLLSGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMS 223 (375)
Q Consensus 165 ~G~i~~~~~LsG~P~~~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~ 223 (375)
.|+|.|+|+|+|+|+|+|+||++ ..++||+|||||++++|+++|.|+|+||||+|+||+
T Consensus 197 ~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~ 276 (435)
T 2vgl_M 197 SGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR 276 (435)
T ss_dssp EEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEE
T ss_pred EEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEE
Confidence 99999999999999999999874 257899999999999999999999999999999999
Q ss_pred EEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEEE
Q 017238 224 YRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWS 299 (375)
Q Consensus 224 Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~ 299 (375)
||++....+||.++||++.. +++++|+.++++++++. .+++|.|+||+|+.+..+.+++++|++ +|++ ++++|+
T Consensus 277 Yr~~~~~~~P~~i~~~~~~~-~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~ 354 (435)
T 2vgl_M 277 YRTTKDIILPFRVIPLVREV-GRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWK 354 (435)
T ss_dssp EEECSSCCCSEEEEEEEECC-TTTEEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEE-EEETTTTEEEEE
T ss_pred EEecCCcCCCeEEEEEEEec-CCCEEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeE-EEccCCCEEEEE
Confidence 99998888999999999954 45789999998876653 699999999999999999999999999 9988 999999
Q ss_pred eCCCCCCCCceEEEEEEeecCC-cCCCCCccEEEEEEECceeccccEEeEEEeec-----CCCcccccEEEEEecccEEE
Q 017238 300 IGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEV 373 (375)
Q Consensus 300 I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~s~SGl~V~~l~v~~-----~~~~~~k~vky~t~sg~y~i 373 (375)
|++++++.+++++|+++|.+.. ...+.++||+|+|++| +++||++|+++++.+ ++|+|+|||||+|+||+|++
T Consensus 355 I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~ 433 (435)
T 2vgl_M 355 IKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 433 (435)
T ss_dssp EEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred eccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence 9999999999999999997643 3456799999999999 999999999999944 37999999999999999999
Q ss_pred cC
Q 017238 374 RS 375 (375)
Q Consensus 374 r~ 375 (375)
|+
T Consensus 434 R~ 435 (435)
T 2vgl_M 434 RC 435 (435)
T ss_dssp CC
T ss_pred cC
Confidence 96
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.6e-85 Score=654.26 Aligned_cols=360 Identities=29% Similarity=0.532 Sum_probs=321.1
Q ss_pred CCCCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCcc
Q 017238 4 LKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFP 83 (375)
Q Consensus 4 ~~~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p 83 (375)
.+.+|+++.++++++|+++++|||+++++.+.|++++++|||++.++|++|||+++|+.|++||+.+|++||||+|+|+|
T Consensus 44 ~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~ 123 (423)
T 1w63_M 44 GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYP 123 (423)
T ss_dssp SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHhhhcCCCcchhcccccccCCCCCccCCCCCCCCcCCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEE
Q 017238 84 LTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCE 163 (375)
Q Consensus 84 ~~t~~~~lk~~i~~~s~~~k~~~~~~g~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~ 163 (375)
++|++++|++++.++++... . .+...|++..+++|||+.|++|++|||||||+|+++++++++|.+++++
T Consensus 124 ~~t~~~~l~~~i~~~~~~~~------~----~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~e 193 (423)
T 1w63_M 124 QTTDSKILQEFITQEGHKLE------T----GAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSE 193 (423)
T ss_dssp CCCCSTTTTTTCCSCCCCCC------C----C-----------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEE
T ss_pred eecCHHHHHHhhcCCCcccc------c----cccCCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEE
Confidence 99999999999999998521 0 0012334556789999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeCCCCeeEEEecCCc-------------ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCC
Q 017238 164 IYGEVQVNCLLSGLPDLTLSFANPS-------------ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLK 230 (375)
Q Consensus 164 v~G~i~~~~~LsG~P~~~l~ln~~~-------------~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~Y~~~~~~ 230 (375)
|.|+|.|+|+|+|+|+|+|+||++. .++||+|||||+++.|+++|.|+|+||||+|+||+||++...
T Consensus 194 V~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~ 273 (423)
T 1w63_M 194 IVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHV 273 (423)
T ss_dssp EEEEEEEEEECSSCCEEEEEECSCC-------------CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCC
T ss_pred EEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCc
Confidence 9999999999999999999999875 588999999999999999999999999999999999999888
Q ss_pred CCCEEEEEEEEEcCCccEEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEEEeCCCCCC
Q 017238 231 STPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKD 306 (375)
Q Consensus 231 ~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~ 306 (375)
.+||.++||++.. +++++|++++++++++. .++||.|+||+|+.+..+.+++++|++ +|++ ++++|+|++++++
T Consensus 274 ~~P~~i~~~~~~~-~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~~i~~~ 351 (423)
T 1w63_M 274 KPLIWIESVIEKH-SHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSV-KWVPENSEIVWSVKSFPGG 351 (423)
T ss_dssp CCTTCCEEEEEEE-TTTEEEEEEEEECCSCTTSEEESCEEEEECCTTCCCCEEEESSSEE-EEETGGGEEEEECSEEETT
T ss_pred CCCEEEEEEEEec-CCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCcccceEEecCccE-EEecCCCEEEEEeCcCCCC
Confidence 8999999999854 35789999988876654 699999999999999999999999999 9998 9999999999999
Q ss_pred CCceEEEEEEeecCC-cCCCCCccEEEEEEECceeccccEEeEEEeec-CCCcccccEEEEEecccEEEcC
Q 017238 307 KAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-VPNRLYKGFRAVTRAGEYEVRS 375 (375)
Q Consensus 307 ~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~s~SGl~V~~l~v~~-~~~~~~k~vky~t~sg~y~ir~ 375 (375)
.+++++|++++.+.. ..++.++|++|+|++|++++||++|+++++.+ .+|+++|||||+|+||+|++|+
T Consensus 352 ~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 352 KEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp CEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEECC
T ss_pred CcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEEec
Confidence 899999999997543 24567999999999999999999999999954 4799999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=4.2e-69 Score=515.08 Aligned_cols=283 Identities=24% Similarity=0.450 Sum_probs=225.0
Q ss_pred cccChHHHhhhcCCCcchhcccccccCCCCCccCCCCCCCCcCCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEE
Q 017238 84 LTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCE 163 (375)
Q Consensus 84 ~~t~~~~lk~~i~~~s~~~k~~~~~~g~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~ 163 (375)
|+|+++.||+||..+++..+... ...+..+|++.++++|||+.|++|++|||||||+|+++++++++|.+++++
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~------~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~e 74 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQT------KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAH 74 (314)
T ss_dssp -------------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccc------cccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEE
Confidence 67999999999999988654321 011234566778899999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeCCCCeeEEEecCC---------------------cccccceecceeecCCCCCCceEEEeCCCCcEEEE
Q 017238 164 IYGEVQVNCLLSGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLM 222 (375)
Q Consensus 164 v~G~i~~~~~LsG~P~~~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm 222 (375)
|.|.|.|+|+|+|+|+|+|+||++ ..++||+|||||++++|+++|.|+|+||||+|+||
T Consensus 75 V~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm 154 (314)
T 1i31_A 75 VSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM 154 (314)
T ss_dssp EEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEE
T ss_pred EEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEE
Confidence 999999999999999999999885 24789999999999999999999999999999999
Q ss_pred EEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEE
Q 017238 223 SYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTW 298 (375)
Q Consensus 223 ~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W 298 (375)
+||++.+..+||.+.||++..+ +.++|+.++++++++. .++||.|+||+|+.+..+++++++|++ +|+. ++++|
T Consensus 155 ~Yr~~~~~~lP~~v~~~~~~~g-~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W 232 (314)
T 1i31_A 155 RYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVW 232 (314)
T ss_dssp EEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEE-EEEGGGTEEEE
T ss_pred EEEecCCcCCCEEEEEEEEecC-CcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceE-EEecCCCEEEE
Confidence 9999988889999999999653 4799999999887654 699999999999999999999999999 9999 99999
Q ss_pred EeCCCCCCCCceEEEEEEeecCC-cCCCCCccEEEEEEECceeccccEEeEEEeec-----CCCcccccEEEEEecccEE
Q 017238 299 SIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYE 372 (375)
Q Consensus 299 ~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~s~SGl~V~~l~v~~-----~~~~~~k~vky~t~sg~y~ 372 (375)
+|++++++.+++++|+++|.+.. ...+.++||+|+|++| +++||++|++|++.+ .+|+++|||||+|+||+|+
T Consensus 233 ~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~ 311 (314)
T 1i31_A 233 KIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 311 (314)
T ss_dssp EEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEE
T ss_pred EeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEE
Confidence 99999998899999999997643 3456699999999999 999999999999944 4799999999999999999
Q ss_pred EcC
Q 017238 373 VRS 375 (375)
Q Consensus 373 ir~ 375 (375)
+|+
T Consensus 312 ~R~ 314 (314)
T 1i31_A 312 TRC 314 (314)
T ss_dssp ECC
T ss_pred EcC
Confidence 996
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.1e-65 Score=479.69 Aligned_cols=246 Identities=28% Similarity=0.556 Sum_probs=223.9
Q ss_pred cccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeeEEEecCCc-------------ccccce
Q 017238 128 PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS-------------ILHDVR 194 (375)
Q Consensus 128 ~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v~G~i~~~~~LsG~P~~~l~ln~~~-------------~l~d~~ 194 (375)
+||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++. .++|++
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 6999999999999999999999999999999999999999999999999999999998743 388999
Q ss_pred ecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCC--CceeeEEEEEeC
Q 017238 195 FHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTIDSIILQFQL 272 (375)
Q Consensus 195 fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~~~v~I~ip~ 272 (375)
|||||+++.|+++|.|+|+||||+|+||+||++....+||.++||++.. +.+++++.++++++++ ..+++|.|+||+
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~-~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKH-SHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEE-ETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred cccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecC-CCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 9999999999999999999999999999999998888999999999865 3579999999987765 379999999999
Q ss_pred CCCceeeEEEEcceeceeEeC--cEEEEEeCCCCCCCCceEEEEEEeecC-CcCCCCCccEEEEEEECceeccccEEeEE
Q 017238 273 PPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETG-LETLRVFPTFQVEFRIMGVALSGLQIDKL 349 (375)
Q Consensus 273 p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~i~v~F~i~~~s~SGl~V~~l 349 (375)
|.++.++.++++.|++ +|+. ++|+|+|++++++.+++++|++++.+. ....+.++||+|+|++|++++||++|++|
T Consensus 160 P~~~~~~~~~~~~G~~-~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L 238 (266)
T 4en2_M 160 PNDADSPKFKTTVGSV-KWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 238 (266)
T ss_dssp CTTCEEEEEEESSSEE-EEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEE
T ss_pred CCCcCcceEEecCceE-EEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEE
Confidence 9999999999999999 9999 999999999999999999999999653 23456799999999999999999999999
Q ss_pred Ee-ecCCCcccccEEEEEecccEEEcC
Q 017238 350 DL-QNVPNRLYKGFRAVTRAGEYEVRS 375 (375)
Q Consensus 350 ~v-~~~~~~~~k~vky~t~sg~y~ir~ 375 (375)
+| ++.+|+++|||||+|+||+|++|+
T Consensus 239 ~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 239 KIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 99 446899999999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=5.4e-63 Score=483.12 Aligned_cols=250 Identities=24% Similarity=0.439 Sum_probs=228.3
Q ss_pred CCcCC-cc---cCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeeEEEecCC-----------
Q 017238 123 TASCV-PW---RPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP----------- 187 (375)
Q Consensus 123 ~~~~~-~W---R~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v~G~i~~~~~LsG~P~~~l~ln~~----------- 187 (375)
..+++ || |+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||+.
T Consensus 101 ~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~ 180 (385)
T 3ml6_A 101 YSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTA 180 (385)
T ss_dssp --CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC------------
T ss_pred cCCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccccccc
Confidence 34444 99 8899999999999999999999999999999999999999999999999999999875
Q ss_pred ----------cccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeec
Q 017238 188 ----------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRN 257 (375)
Q Consensus 188 ----------~~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~ 257 (375)
..++||+|||||+++.|+++|+|+|+||||+|+||+||++.+..+||.+.||++..+ ++++++.+++++
T Consensus 181 ~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~-~~~vei~v~lk~ 259 (385)
T 3ml6_A 181 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKS 259 (385)
T ss_dssp ----------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEET-TTEEEEEEEEEE
T ss_pred ccccccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCC-CeEEEEEEEEee
Confidence 247899999999999999999999999999999999999888889999999999764 689999999998
Q ss_pred CCCC--ceeeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEEEeCCCCCCCCceEEEEEEeecCC-cCCCCCccEEE
Q 017238 258 DPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQV 332 (375)
Q Consensus 258 ~~~~--~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v 332 (375)
+++. .+++|.|+||+|+++.+++++++.|++ +|++ ++++|+|++++++.+++++|++.+.+.. ...+.++||+|
T Consensus 260 ~f~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v 338 (385)
T 3ml6_A 260 NFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISM 338 (385)
T ss_dssp CSCTTCCEEEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEE
T ss_pred cCCCcceEEEEEEEecCCCCcccceEEecCceE-EEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEE
Confidence 7653 799999999999999999999999999 9998 9999999999999899999999996532 34467999999
Q ss_pred EEEECceeccccEEeEEEe-ec----CCCcccccEEEEEecccEEEcC
Q 017238 333 EFRIMGVALSGLQIDKLDL-QN----VPNRLYKGFRAVTRAGEYEVRS 375 (375)
Q Consensus 333 ~F~i~~~s~SGl~V~~l~v-~~----~~~~~~k~vky~t~sg~y~ir~ 375 (375)
+|++| +++|||+|++++| ++ ++|+++|||||+|+||+|++|+
T Consensus 339 ~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 339 NFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp EEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred EEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 99999 9999999999999 44 4689999999999999999996
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=2e-62 Score=464.78 Aligned_cols=251 Identities=24% Similarity=0.377 Sum_probs=208.3
Q ss_pred CCCcC-CcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeeEEEecCC-------------
Q 017238 122 ATASC-VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP------------- 187 (375)
Q Consensus 122 ~~~~~-~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v~G~i~~~~~LsG~P~~~l~ln~~------------- 187 (375)
++..+ .+||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++
T Consensus 17 a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~~ 94 (301)
T 3l81_A 17 AASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGP 94 (301)
T ss_dssp ------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCCS
T ss_pred hhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccccC
Confidence 33444 499986 79999999999999999999999999999999999999999999999999964
Q ss_pred -cccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCC--CCCEEEEEEEEEcCCccEEEEEEEeecCCC--Cc
Q 017238 188 -SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLK--STPIYVKPQLTSDAGTCRISVMVGIRNDPG--KT 262 (375)
Q Consensus 188 -~~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~Y~~~~~~--~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~ 262 (375)
..++||+|||||+++.|+++|.|+|+||||+|+||+||++... .+||.++||++...++.++|+.++++++++ ..
T Consensus 95 ~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~ 174 (301)
T 3l81_A 95 GIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQ 174 (301)
T ss_dssp SSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCE
T ss_pred ceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcE
Confidence 2378999999999999999999999999999999999998753 689999999998755589999999988765 38
Q ss_pred eeeEEEEEeCCCCceeeE--EEEcceeceeEeCcEEEEEeCCCCCCCCceEEEEEEeecCCc----------CCCCCccE
Q 017238 263 IDSIILQFQLPPCILSAD--LTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLE----------TLRVFPTF 330 (375)
Q Consensus 263 ~~~v~I~ip~p~~~~~~~--~~~~~G~~~~~~~~~l~W~I~~~~~~~~~~l~g~~~~~~~~~----------~~~~~~~i 330 (375)
++||.|+||+|+++..+. +.++.|++ +|..++|+|+|++++++.+.++++++++.+... ..+.++||
T Consensus 175 ~~nV~I~IPvP~~~~~~~~~~~~~~G~~-~y~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI 253 (301)
T 3l81_A 175 ALNVRLHLPLPRGVVSLSQELSSPEQKA-ELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPA 253 (301)
T ss_dssp EEEEEEEEECCTTCEEEEEEESSTTCEE-EEETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCCCE
T ss_pred EEEEEEEEcCCCCcccceEEEeecCceE-EEeCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCCCE
Confidence 999999999999998888 55789999 993399999999999988888888877754221 14568999
Q ss_pred EEEEEECceeccccEEeEEEeec---CCCcccccEEEEEecccEEEcC
Q 017238 331 QVEFRIMGVALSGLQIDKLDLQN---VPNRLYKGFRAVTRAGEYEVRS 375 (375)
Q Consensus 331 ~v~F~i~~~s~SGl~V~~l~v~~---~~~~~~k~vky~t~sg~y~ir~ 375 (375)
+|+|++|++++||++|++|+|.+ .+|+++|||||+|+||+|++|+
T Consensus 254 ~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 254 SLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp EEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred EEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 99999999999999999999943 3589999999999999999996
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.87 E-value=3.1e-22 Score=172.27 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=95.2
Q ss_pred CCCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCccc
Q 017238 5 KSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPL 84 (375)
Q Consensus 5 ~~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p~ 84 (375)
+.+|+++.++++++|+++++|||+++++.+.|++++++|||++.++|++|||+++|+.|++||+.+|++||||+|+|+|+
T Consensus 45 ~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~ 124 (158)
T 1w63_Q 45 KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQ 124 (158)
T ss_dssp SSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEES
T ss_pred CCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHhhhcCCCcchhc
Q 017238 85 TTEPNILREMIAPPNIVSK 103 (375)
Q Consensus 85 ~t~~~~lk~~i~~~s~~~k 103 (375)
+|+++.|+++|.+++.+++
T Consensus 125 eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 125 DTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHhcchhhhh
Confidence 9999999999998877554
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.84 E-value=5.1e-21 Score=161.91 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=89.0
Q ss_pred CCCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCccc
Q 017238 5 KSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPL 84 (375)
Q Consensus 5 ~~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p~ 84 (375)
+.+|+++.++++++|++.++|||+++++.+.|+++.+++||++.+++++|||+++|+.|++||+.+|++||||+|+|+|+
T Consensus 45 ~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~ 124 (142)
T 2vgl_S 45 KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124 (142)
T ss_dssp TSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEEC
T ss_pred CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-ChHHHhhhcCCC
Q 017238 85 TT-EPNILREMIAPP 98 (375)
Q Consensus 85 ~t-~~~~lk~~i~~~ 98 (375)
+| +.+.||.++.++
T Consensus 125 et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 125 ETSQTKVLKQLLMLQ 139 (142)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHhhh
Confidence 98 577799887543
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.80 E-value=1.6e-19 Score=154.00 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=87.5
Q ss_pred CceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhc-CCCCHHHHHhhHHHHHHHHHhHhhCCcccc
Q 017238 7 MPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYL-GELNEDLIKDNFVIVYELLDEMIDNGFPLT 85 (375)
Q Consensus 7 ~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~-~~l~e~~i~~n~~~i~~llde~id~G~p~~ 85 (375)
+|++..+++.++|++.++|||+++++.+.|+++.+++||++.++|.+|| |+++|..|++||..+|++||||+|+|+||+
T Consensus 57 ~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~e 136 (153)
T 3tjz_C 57 SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILE 136 (153)
T ss_dssp CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECC
T ss_pred CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeee
Confidence 6999999999999999999999999999999999999999999999999 889999999999999999999999999999
Q ss_pred cChHHHhhhcCCCc
Q 017238 86 TEPNILREMIAPPN 99 (375)
Q Consensus 86 t~~~~lk~~i~~~s 99 (375)
|+++.|...+.+.+
T Consensus 137 T~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 137 SDPQQVVHRVALRG 150 (153)
T ss_dssp CCHHHHHHTC----
T ss_pred CCHHHHHHHHhccc
Confidence 99999999988754
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.12 E-value=9.8e-08 Score=89.51 Aligned_cols=202 Identities=17% Similarity=0.275 Sum_probs=135.5
Q ss_pred cceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCC-------CCeeEEEecCCcccccceec----ceeecCCCCC
Q 017238 138 NNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSG-------LPDLTLSFANPSILHDVRFH----PCVRFRPWES 206 (375)
Q Consensus 138 ~nei~vdV~E~v~~~~~~~G~i~~~~v~G~i~~~~~LsG-------~P~~~l~ln~~~~l~d~~fH----~cV~~~~f~~ 206 (375)
..++-..++|.||+.+. +|.+..+.|.|+|.+.- ..| .+.+.+++++...|+.+.-. .++.
T Consensus 67 ~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLsy-~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~------ 138 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFK-DGMLQNSQLIGEIALNY-LPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVA------ 138 (328)
T ss_dssp CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEE-ECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEE------
T ss_pred CCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEec-CCCccccCCCCccEEEEecCcchhheeeCCHHHhccCC------
Confidence 45788899999999996 68899999999988864 333 25588888876666654332 2332
Q ss_pred CceEEEeCC---CCcEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCCC-----ceeeEEEEEeCCC-Cce
Q 017238 207 HQILSFVPP---DGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK-----TIDSIILQFQLPP-CIL 277 (375)
Q Consensus 207 ~~~i~f~PP---dG~F~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~-----~~~~v~I~ip~p~-~~~ 277 (375)
++...|-++ ...-.+++|+++. ...|+.+.+..+..+....+-|.+++.+.... .++||+|.+|+.. ...
T Consensus 139 ~~eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa~at 217 (328)
T 3g9h_A 139 PEEFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGANAT 217 (328)
T ss_dssp TTEEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSSCEE
T ss_pred CCCEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCCcee
Confidence 122333332 1236689999975 77899999988887644444444444443322 7999999999976 344
Q ss_pred eeEEEEcceeceeEeCcEEEEEeCC-C--CCCCC-ceEEEEEEeecCCcCCCCCccEEEEEEECce---------ecccc
Q 017238 278 SADLTSNHGTVNVLSNKICTWSIGR-I--PKDKA-PSLSGTMVLETGLETLRVFPTFQVEFRIMGV---------ALSGL 344 (375)
Q Consensus 278 ~~~~~~~~G~~~~~~~~~l~W~I~~-~--~~~~~-~~l~g~~~~~~~~~~~~~~~~i~v~F~i~~~---------s~SGl 344 (375)
+++.. ..|++ .=+.+.+.|+|+. + ..+.+ ..|.|.|..+.. ..+. ...|.+.|++.+. .-|||
T Consensus 218 s~qsk-P~gtw-n~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~-~~~~-~~gV~akF~~~~~~~~~~~~~~~gsgi 293 (328)
T 3g9h_A 218 SALSK-PQGSF-SKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGL-AHES-AKGVITKFTISETDNVALPHSGAGSGI 293 (328)
T ss_dssp EEEES-SSCCB-CSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSC-CCBC-SSCEEEEEEECCCSCSSCTTTTCSCCC
T ss_pred EEEec-CCcee-ccccCEEEEECCCCcccccCCCCCeEEEEEEcCCC-CCCC-CCcEEEEEEEeCCCcccccccccCCce
Confidence 43332 35665 3333999999998 3 22223 689999988332 2222 2239999999875 46799
Q ss_pred EEeEEEee
Q 017238 345 QIDKLDLQ 352 (375)
Q Consensus 345 ~V~~l~v~ 352 (375)
.|......
T Consensus 294 ~i~~~~~~ 301 (328)
T 3g9h_A 294 TLTCQELD 301 (328)
T ss_dssp EEEEEEES
T ss_pred eEEecccc
Confidence 99888773
No 11
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=89.80 E-value=0.89 Score=39.18 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=44.0
Q ss_pred eEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCC
Q 017238 9 VIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGE 57 (375)
Q Consensus 9 v~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~ 57 (375)
.+++|++.|.|+..+++.|+|+|+.+-+--..+.||.++.+-+..-+|.
T Consensus 45 s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~~ 93 (189)
T 4b93_A 45 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 93 (189)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhccc
Confidence 5778999999999999999999999999999999999999888777764
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=89.77 E-value=0.94 Score=38.53 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=46.8
Q ss_pred CCCCc-----eEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCC
Q 017238 4 LKSMP-----VIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGE 57 (375)
Q Consensus 4 ~~~~P-----v~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~ 57 (375)
++.|| .++++++.|.++..+++.|+|+|+.+.+--..+.||.++.+-+..-+|.
T Consensus 87 ~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~yg~ 145 (173)
T 4afi_A 87 AKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 145 (173)
T ss_dssp TTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHHHHHHhch
Confidence 45565 6778999998899999999999999999999999999999988877763
No 13
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=89.04 E-value=1.3 Score=37.44 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=43.4
Q ss_pred eEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCC
Q 017238 9 VIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGE 57 (375)
Q Consensus 9 v~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~ 57 (375)
.+++++..|.++..+++.|+|+++.+-+--..+.||.++.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5777888888888899999999999999999999999999988877764
No 14
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=85.42 E-value=2.7 Score=36.21 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=42.4
Q ss_pred eEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCC
Q 017238 9 VIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGE 57 (375)
Q Consensus 9 v~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~ 57 (375)
.++++++.|+|+..+++.|+|+++.+-+--.++.||.++.+-+..-++.
T Consensus 54 s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 54 TLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccc
Confidence 4667888888888899999999999999999999999999887776663
No 15
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=78.17 E-value=5.2 Score=34.62 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=40.8
Q ss_pred eEEeCCEEEE-EEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcC
Q 017238 9 VIASPTHYIF-QIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLG 56 (375)
Q Consensus 9 v~~~~~~~~~-~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~ 56 (375)
.++++++.++ |+..+++.++|+++.+-+--..+.||.++.+-+..-++
T Consensus 59 s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 59 SVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4566777666 67778999999999999999999999999988887776
No 16
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=76.09 E-value=7.3 Score=31.76 Aligned_cols=48 Identities=17% Similarity=0.007 Sum_probs=39.3
Q ss_pred eEEeCCEEEEEE-EeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcC
Q 017238 9 VIASPTHYIFQI-VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLG 56 (375)
Q Consensus 9 v~~~~~~~~~~~-~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~ 56 (375)
.++++++.+.++ ..+++-++|+|+.+-+--..+.||.++.+-...-+|
T Consensus 62 sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 62 SIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 456677777666 568999999999999999999999988887776555
No 17
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=22.08 E-value=14 Score=30.79 Aligned_cols=52 Identities=10% Similarity=0.175 Sum_probs=35.8
Q ss_pred CCChhhHHHHHHHHHHHHhhhcCCCCHHH-----HHhhHHHHHHHHH-hHhhCCcccc
Q 017238 34 EMPPLMGIEFLCRVADILSDYLGELNEDL-----IKDNFVIVYELLD-EMIDNGFPLT 85 (375)
Q Consensus 34 ~~n~~~~~~~L~~~~~vl~~y~~~l~e~~-----i~~n~~~i~~lld-e~id~G~p~~ 85 (375)
+.++...=+||+.+.+.+...+|.++++. --.+..+.|.+|| |++++|+.|.
T Consensus 10 ~~~~~~~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQL 67 (166)
T 3vjz_A 10 DIRQQEPSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQL 67 (166)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccChHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHhh
Confidence 34455556788888888888887544333 2346677788776 6778899875
No 18
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=20.41 E-value=2e+02 Score=22.70 Aligned_cols=41 Identities=20% Similarity=0.499 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcCCCC-HHH-HHhhHHHHHHHHHhHhhCCccc
Q 017238 42 EFLCRVADILSDYLGELN-EDL-IKDNFVIVYELLDEMIDNGFPL 84 (375)
Q Consensus 42 ~~L~~~~~vl~~y~~~l~-e~~-i~~n~~~i~~llde~id~G~p~ 84 (375)
+++.+|+.++.+ ..-+ ++. -+.++..|.+++.+|=+.|.|=
T Consensus 66 ~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 66 SVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 445555555554 2222 222 3467888889999998888873
Done!