Query 017240
Match_columns 375
No_of_seqs 442 out of 3831
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02697 lycopene epsilon cycl 100.0 8.6E-51 1.9E-55 403.8 32.9 365 1-375 1-476 (529)
2 PLN02463 lycopene beta cyclase 100.0 2.4E-39 5.1E-44 317.5 31.3 276 94-375 14-394 (447)
3 TIGR01790 carotene-cycl lycope 100.0 9.2E-30 2E-34 247.8 28.4 254 109-374 1-354 (388)
4 PF05834 Lycopene_cycl: Lycope 100.0 1.5E-27 3.3E-32 230.8 23.2 247 109-374 1-342 (374)
5 TIGR02023 BchP-ChlP geranylger 100.0 2.9E-26 6.2E-31 223.3 27.5 247 108-368 1-349 (388)
6 PLN00093 geranylgeranyl diphos 100.0 4.2E-26 9E-31 224.9 27.2 255 104-367 36-397 (450)
7 TIGR02028 ChlP geranylgeranyl 99.9 8.2E-26 1.8E-30 220.4 25.6 252 108-368 1-359 (398)
8 COG0644 FixC Dehydrogenases (f 99.9 1.2E-24 2.5E-29 212.4 25.2 248 107-368 3-354 (396)
9 PRK08020 ubiF 2-octaprenyl-3-m 99.9 9.1E-25 2E-29 212.9 22.2 258 105-368 3-387 (391)
10 PRK08013 oxidoreductase; Provi 99.9 9.2E-25 2E-29 213.5 21.5 265 107-375 3-399 (400)
11 PRK05714 2-octaprenyl-3-methyl 99.9 2E-24 4.4E-29 211.5 20.1 257 107-367 2-390 (405)
12 COG0654 UbiH 2-polyprenyl-6-me 99.9 4.2E-24 9.1E-29 207.9 21.9 249 107-357 2-372 (387)
13 PRK08773 2-octaprenyl-3-methyl 99.9 8.2E-24 1.8E-28 206.3 23.7 259 106-367 5-387 (392)
14 PRK10015 oxidoreductase; Provi 99.9 1.7E-23 3.7E-28 205.8 23.8 259 105-371 3-394 (429)
15 PRK07494 2-octaprenyl-6-methox 99.9 1.3E-23 2.9E-28 204.5 22.0 261 105-368 5-383 (388)
16 PRK08849 2-octaprenyl-3-methyl 99.9 2.8E-23 6.1E-28 202.0 22.8 255 107-367 3-379 (384)
17 TIGR01789 lycopene_cycl lycope 99.9 8.3E-24 1.8E-28 204.1 18.7 240 109-374 1-339 (370)
18 PRK06185 hypothetical protein; 99.9 1.3E-23 2.9E-28 205.8 20.0 262 106-369 5-391 (407)
19 PRK07333 2-octaprenyl-6-methox 99.9 4.7E-23 1E-27 201.6 23.5 243 108-358 2-378 (403)
20 PRK06617 2-octaprenyl-6-methox 99.9 7.8E-23 1.7E-27 198.2 24.7 250 108-368 2-369 (374)
21 PRK08850 2-octaprenyl-6-methox 99.9 6.6E-23 1.4E-27 200.8 23.6 250 107-358 4-380 (405)
22 TIGR01989 COQ6 Ubiquinone bios 99.9 3.5E-23 7.7E-28 204.5 21.2 250 108-358 1-431 (437)
23 PRK10157 putative oxidoreducta 99.9 9.2E-23 2E-27 200.8 22.5 259 105-371 3-393 (428)
24 PF01494 FAD_binding_3: FAD bi 99.9 2.4E-23 5.1E-28 199.2 16.8 203 108-311 2-332 (356)
25 PRK06834 hypothetical protein; 99.9 3.7E-22 8.1E-27 199.2 24.4 210 107-318 3-313 (488)
26 PRK07364 2-octaprenyl-6-methox 99.9 5.2E-22 1.1E-26 195.0 24.1 203 107-310 18-334 (415)
27 TIGR01988 Ubi-OHases Ubiquinon 99.9 8E-22 1.7E-26 191.5 24.8 201 109-310 1-316 (385)
28 PRK09126 hypothetical protein; 99.9 4E-22 8.6E-27 194.4 22.7 203 107-310 3-320 (392)
29 PRK06996 hypothetical protein; 99.9 1.2E-21 2.6E-26 191.4 25.4 255 104-367 8-390 (398)
30 PRK07045 putative monooxygenas 99.9 2.7E-22 5.9E-27 195.3 20.8 206 105-310 3-325 (388)
31 PRK06183 mhpA 3-(3-hydroxyphen 99.9 5.6E-22 1.2E-26 200.9 23.6 212 106-318 9-334 (538)
32 PRK07190 hypothetical protein; 99.9 3.6E-22 7.9E-27 199.1 21.7 212 105-317 3-322 (487)
33 PRK07608 ubiquinone biosynthes 99.9 1.3E-21 2.8E-26 190.5 24.3 201 107-308 5-318 (388)
34 TIGR01984 UbiH 2-polyprenyl-6- 99.9 1.2E-21 2.6E-26 190.3 23.2 199 109-308 1-314 (382)
35 PRK08244 hypothetical protein; 99.9 1.6E-21 3.6E-26 195.6 22.8 211 107-318 2-320 (493)
36 PRK11445 putative oxidoreducta 99.9 1.4E-21 3E-26 187.8 21.3 212 108-334 2-316 (351)
37 PRK08243 4-hydroxybenzoate 3-m 99.9 3.2E-21 6.9E-26 188.1 23.9 203 107-311 2-320 (392)
38 TIGR02032 GG-red-SF geranylger 99.9 1.4E-21 3E-26 182.5 20.4 196 108-304 1-295 (295)
39 PRK07588 hypothetical protein; 99.9 2.1E-21 4.6E-26 189.2 22.1 197 108-306 1-315 (391)
40 PRK05732 2-octaprenyl-6-methox 99.9 3E-21 6.6E-26 188.2 23.2 204 107-311 3-323 (395)
41 PRK06184 hypothetical protein; 99.9 2.3E-21 4.9E-26 195.0 22.2 209 107-317 3-327 (502)
42 PRK07538 hypothetical protein; 99.9 5.5E-21 1.2E-25 187.7 21.1 141 108-249 1-167 (413)
43 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 2.7E-20 5.9E-25 181.3 24.0 202 108-309 3-318 (390)
44 PRK08132 FAD-dependent oxidore 99.9 3.5E-20 7.5E-25 188.3 23.7 212 106-318 22-347 (547)
45 PRK06753 hypothetical protein; 99.9 1.7E-20 3.7E-25 181.6 20.5 195 108-305 1-305 (373)
46 PRK08294 phenol 2-monooxygenas 99.9 3E-20 6.4E-25 190.7 23.1 212 106-317 31-387 (634)
47 PRK08163 salicylate hydroxylas 99.9 5.3E-20 1.2E-24 179.6 23.4 199 107-306 4-322 (396)
48 PRK06126 hypothetical protein; 99.9 2.5E-20 5.4E-25 189.3 20.6 212 105-317 5-350 (545)
49 PRK06847 hypothetical protein; 99.9 2.6E-20 5.6E-25 180.5 19.3 199 107-306 4-318 (375)
50 PLN02985 squalene monooxygenas 99.9 2.2E-19 4.7E-24 180.0 26.0 202 105-306 41-362 (514)
51 PTZ00367 squalene epoxidase; P 99.9 2.5E-19 5.4E-24 180.6 26.4 203 106-308 32-375 (567)
52 PRK06475 salicylate hydroxylas 99.8 9.1E-20 2E-24 178.3 20.9 142 108-250 3-170 (400)
53 PRK05868 hypothetical protein; 99.8 1.6E-19 3.4E-24 174.8 20.7 197 108-306 2-318 (372)
54 PRK07236 hypothetical protein; 99.8 9.3E-18 2E-22 163.4 24.3 141 107-250 6-157 (386)
55 TIGR03219 salicylate_mono sali 99.8 6.7E-18 1.5E-22 165.9 21.0 138 109-249 2-161 (414)
56 PLN02927 antheraxanthin epoxid 99.8 4.8E-17 1E-21 165.3 24.0 201 106-310 80-407 (668)
57 KOG2614 Kynurenine 3-monooxyge 99.7 2.5E-17 5.3E-22 154.4 14.9 202 108-310 3-328 (420)
58 PF04820 Trp_halogenase: Trypt 99.7 6.8E-17 1.5E-21 159.7 16.0 121 187-311 150-353 (454)
59 PRK08255 salicylyl-CoA 5-hydro 99.7 1.5E-16 3.2E-21 167.0 15.5 129 108-249 1-143 (765)
60 PRK04176 ribulose-1,5-biphosph 99.7 4.7E-16 1E-20 142.5 16.3 186 107-310 25-256 (257)
61 KOG1298 Squalene monooxygenase 99.7 3E-16 6.6E-21 144.9 14.7 201 105-306 43-362 (509)
62 COG1635 THI4 Ribulose 1,5-bisp 99.7 1E-15 2.2E-20 131.8 16.1 185 107-309 30-260 (262)
63 KOG3855 Monooxygenase involved 99.7 1.6E-16 3.6E-21 148.0 10.6 257 107-368 36-476 (481)
64 TIGR00292 thiazole biosynthesi 99.7 1.8E-15 3.9E-20 138.2 17.0 196 107-308 21-253 (254)
65 COG2081 Predicted flavoprotein 99.6 6.8E-15 1.5E-19 137.9 15.2 143 107-250 3-170 (408)
66 PF13738 Pyr_redox_3: Pyridine 99.6 6.8E-16 1.5E-20 136.5 6.6 167 111-281 1-179 (203)
67 KOG2415 Electron transfer flav 99.6 9E-15 2E-19 136.4 14.2 208 104-312 73-426 (621)
68 PF03486 HI0933_like: HI0933-l 99.6 2.4E-14 5.1E-19 139.2 14.9 139 108-250 1-169 (409)
69 PF01946 Thi4: Thi4 family; PD 99.6 5.8E-14 1.2E-18 121.8 14.0 125 107-249 17-167 (230)
70 COG0492 TrxB Thioredoxin reduc 99.6 2.5E-13 5.5E-18 126.8 18.5 146 107-282 3-156 (305)
71 PLN02172 flavin-containing mon 99.5 2.3E-13 5E-18 134.8 16.5 178 107-285 10-220 (461)
72 PRK05192 tRNA uridine 5-carbox 99.5 2E-13 4.4E-18 136.9 15.7 140 107-247 4-157 (618)
73 TIGR01292 TRX_reduct thioredox 99.5 3.5E-13 7.6E-18 126.2 15.6 146 108-282 1-154 (300)
74 COG2072 TrkA Predicted flavopr 99.5 4.8E-13 1E-17 131.9 16.3 168 105-285 6-191 (443)
75 PRK15317 alkyl hydroperoxide r 99.5 8.9E-13 1.9E-17 133.1 15.8 148 105-282 209-364 (517)
76 PRK12779 putative bifunctional 99.5 6.5E-14 1.4E-18 149.0 7.4 189 44-285 250-463 (944)
77 PF01266 DAO: FAD dependent ox 99.5 8.2E-13 1.8E-17 126.3 13.9 141 109-250 1-206 (358)
78 TIGR03143 AhpF_homolog putativ 99.5 1E-12 2.2E-17 133.6 15.1 146 107-283 4-157 (555)
79 PF01134 GIDA: Glucose inhibit 99.5 1.2E-12 2.5E-17 125.1 14.1 136 109-246 1-151 (392)
80 PRK12831 putative oxidoreducta 99.4 1.7E-13 3.7E-18 136.2 8.5 186 44-284 90-296 (464)
81 PF00743 FMO-like: Flavin-bind 99.4 4.8E-13 1E-17 134.3 11.8 170 109-284 3-198 (531)
82 PLN02661 Putative thiazole syn 99.4 6.1E-12 1.3E-16 118.5 18.0 186 106-310 91-329 (357)
83 TIGR03140 AhpF alkyl hydropero 99.4 2.1E-12 4.5E-17 130.3 14.6 148 105-283 210-366 (515)
84 TIGR00136 gidA glucose-inhibit 99.4 5.4E-12 1.2E-16 126.5 15.0 139 108-247 1-154 (617)
85 PRK10262 thioredoxin reductase 99.4 1E-11 2.2E-16 117.9 15.5 148 106-283 5-160 (321)
86 TIGR03329 Phn_aa_oxid putative 99.4 7.3E-12 1.6E-16 124.7 15.1 62 186-250 178-240 (460)
87 PRK11259 solA N-methyltryptoph 99.4 6.8E-12 1.5E-16 121.6 14.5 142 107-250 3-207 (376)
88 KOG1399 Flavin-containing mono 99.4 4.7E-12 1E-16 123.8 13.3 173 107-285 6-202 (448)
89 PRK05249 soluble pyridine nucl 99.4 7E-12 1.5E-16 125.0 14.8 169 105-281 3-187 (461)
90 PRK06116 glutathione reductase 99.4 2.7E-12 5.9E-17 127.5 10.7 166 107-280 4-178 (450)
91 PRK11728 hydroxyglutarate oxid 99.4 1.9E-11 4.2E-16 119.3 16.2 141 108-250 3-207 (393)
92 TIGR01424 gluta_reduc_2 glutat 99.4 7.4E-12 1.6E-16 124.2 13.3 167 107-280 2-177 (446)
93 PRK12775 putative trifunctiona 99.4 1.5E-12 3.3E-17 139.7 9.0 182 44-284 381-586 (1006)
94 TIGR01377 soxA_mon sarcosine o 99.4 1.1E-11 2.5E-16 120.2 14.3 64 185-250 139-203 (380)
95 COG0579 Predicted dehydrogenas 99.3 1.3E-11 2.9E-16 119.2 14.0 146 107-252 3-216 (429)
96 PRK06416 dihydrolipoamide dehy 99.3 1.5E-11 3.2E-16 122.7 14.5 170 107-281 4-184 (462)
97 PRK05976 dihydrolipoamide dehy 99.3 2E-11 4.3E-16 122.0 15.4 167 107-279 4-190 (472)
98 PRK06467 dihydrolipoamide dehy 99.3 1.5E-11 3.3E-16 122.7 14.3 167 107-282 4-187 (471)
99 PRK09754 phenylpropionate diox 99.3 2.9E-11 6.3E-16 118.2 15.6 153 108-305 145-307 (396)
100 PRK09853 putative selenate red 99.3 5.5E-12 1.2E-16 133.0 11.1 182 45-284 490-683 (1019)
101 PRK06116 glutathione reductase 99.3 7.8E-11 1.7E-15 117.1 18.4 150 108-305 168-326 (450)
102 PRK12810 gltD glutamate syntha 99.3 9.1E-11 2E-15 117.2 18.8 110 197-311 335-467 (471)
103 TIGR01421 gluta_reduc_1 glutat 99.3 6.2E-12 1.3E-16 124.8 10.2 164 107-282 2-179 (450)
104 PTZ00383 malate:quinone oxidor 99.3 1.6E-11 3.4E-16 122.4 13.1 65 186-251 206-277 (497)
105 PRK14694 putative mercuric red 99.3 2.8E-11 6E-16 120.9 14.5 161 105-279 4-188 (468)
106 PRK06481 fumarate reductase fl 99.3 6.1E-11 1.3E-15 119.4 16.7 144 106-249 60-253 (506)
107 PRK05249 soluble pyridine nucl 99.3 9.8E-11 2.1E-15 116.8 18.0 149 108-305 176-333 (461)
108 PRK11101 glpA sn-glycerol-3-ph 99.3 3.3E-11 7.1E-16 122.3 14.5 65 186-250 144-214 (546)
109 TIGR03315 Se_ygfK putative sel 99.3 6.7E-12 1.5E-16 132.9 9.4 182 44-283 487-680 (1012)
110 PTZ00058 glutathione reductase 99.3 1.1E-11 2.5E-16 125.3 10.7 169 106-283 47-251 (561)
111 PLN02507 glutathione reductase 99.3 1.6E-11 3.5E-16 123.3 11.6 173 105-282 23-216 (499)
112 TIGR01316 gltA glutamate synth 99.3 6E-12 1.3E-16 124.8 8.4 147 45-249 79-232 (449)
113 TIGR01373 soxB sarcosine oxida 99.3 5.2E-11 1.1E-15 116.8 14.8 64 186-250 178-243 (407)
114 PRK12778 putative bifunctional 99.3 5.8E-12 1.3E-16 132.6 8.6 184 44-284 379-585 (752)
115 TIGR01350 lipoamide_DH dihydro 99.3 1.4E-10 3E-15 115.7 18.1 150 108-306 171-331 (461)
116 PRK12769 putative oxidoreducta 99.3 1.2E-10 2.6E-15 120.8 18.2 86 44-141 276-361 (654)
117 TIGR01421 gluta_reduc_1 glutat 99.3 1.8E-10 3.9E-15 114.4 18.6 150 108-305 167-326 (450)
118 PRK00711 D-amino acid dehydrog 99.3 4.1E-11 8.8E-16 117.8 13.6 64 186-250 196-260 (416)
119 PRK06115 dihydrolipoamide dehy 99.3 2.1E-11 4.5E-16 121.6 11.6 167 107-282 3-187 (466)
120 PRK01747 mnmC bifunctional tRN 99.3 5E-11 1.1E-15 123.9 14.6 64 186-251 403-467 (662)
121 PRK13369 glycerol-3-phosphate 99.3 5.8E-11 1.3E-15 119.5 14.6 64 186-250 150-218 (502)
122 PLN02546 glutathione reductase 99.3 1.3E-11 2.7E-16 125.0 9.8 171 105-283 77-266 (558)
123 COG1249 Lpd Pyruvate/2-oxoglut 99.3 2.9E-11 6.3E-16 118.7 11.9 176 106-285 3-189 (454)
124 PTZ00318 NADH dehydrogenase-li 99.3 2.1E-10 4.5E-15 113.1 18.1 155 109-311 175-350 (424)
125 PRK06416 dihydrolipoamide dehy 99.3 1.8E-10 4E-15 114.8 17.8 150 108-306 173-333 (462)
126 COG1249 Lpd Pyruvate/2-oxoglut 99.3 3.5E-10 7.7E-15 111.0 19.1 150 108-306 174-334 (454)
127 COG1252 Ndh NADH dehydrogenase 99.3 1E-10 2.2E-15 112.3 14.9 154 107-311 155-334 (405)
128 PRK06370 mercuric reductase; V 99.3 6.7E-11 1.4E-15 118.0 14.2 163 107-281 5-183 (463)
129 PRK06327 dihydrolipoamide dehy 99.3 3.4E-11 7.5E-16 120.4 12.0 168 107-280 4-194 (475)
130 PLN02507 glutathione reductase 99.3 2.4E-10 5.3E-15 114.7 18.0 149 108-305 204-361 (499)
131 PF00890 FAD_binding_2: FAD bi 99.3 8E-11 1.7E-15 115.8 14.3 60 189-248 139-204 (417)
132 PRK04965 NADH:flavorubredoxin 99.3 2.3E-10 5.1E-15 111.1 17.3 153 108-305 142-300 (377)
133 PRK08010 pyridine nucleotide-d 99.3 8.3E-11 1.8E-15 116.6 14.4 149 107-281 3-170 (441)
134 PRK13748 putative mercuric red 99.2 7.1E-11 1.5E-15 120.6 13.8 165 106-282 97-283 (561)
135 TIGR01424 gluta_reduc_2 glutat 99.2 3.2E-10 6.9E-15 112.6 18.0 149 108-305 167-324 (446)
136 TIGR01423 trypano_reduc trypan 99.2 3.4E-10 7.5E-15 113.1 18.0 150 108-305 188-349 (486)
137 PF12831 FAD_oxidored: FAD dep 99.2 4.1E-12 8.8E-17 125.3 4.1 134 109-245 1-148 (428)
138 TIGR01318 gltD_gamma_fam gluta 99.2 3.7E-10 7.9E-15 112.6 18.1 86 44-141 90-175 (467)
139 PRK07251 pyridine nucleotide-d 99.2 7.5E-11 1.6E-15 116.8 13.0 148 107-279 3-167 (438)
140 COG3634 AhpF Alkyl hydroperoxi 99.2 1.4E-11 3.1E-16 112.8 7.1 151 106-285 210-370 (520)
141 PRK07818 dihydrolipoamide dehy 99.2 4E-10 8.6E-15 112.5 18.1 149 108-305 173-334 (466)
142 PRK12409 D-amino acid dehydrog 99.2 1.2E-10 2.6E-15 114.3 14.1 63 187-250 193-261 (410)
143 PRK07818 dihydrolipoamide dehy 99.2 5E-11 1.1E-15 119.0 11.5 164 107-279 4-182 (466)
144 TIGR03364 HpnW_proposed FAD de 99.2 9.1E-11 2E-15 113.3 12.8 137 108-250 1-200 (365)
145 PRK06567 putative bifunctional 99.2 3.2E-11 6.9E-16 125.9 10.1 90 44-141 321-417 (1028)
146 PRK07845 flavoprotein disulfid 99.2 5E-10 1.1E-14 111.8 18.2 149 108-305 178-335 (466)
147 TIGR03385 CoA_CoA_reduc CoA-di 99.2 2.6E-10 5.5E-15 112.6 15.9 153 108-305 138-302 (427)
148 PRK12266 glpD glycerol-3-phosp 99.2 1.6E-10 3.4E-15 116.4 14.4 64 186-250 150-219 (508)
149 TIGR02053 MerA mercuric reduct 99.2 5.2E-10 1.1E-14 111.6 18.0 149 108-305 167-327 (463)
150 COG0493 GltD NADPH-dependent g 99.2 3.1E-11 6.7E-16 118.6 8.4 184 44-285 72-278 (457)
151 PRK06370 mercuric reductase; V 99.2 7.4E-10 1.6E-14 110.5 18.3 149 108-305 172-332 (463)
152 PRK06327 dihydrolipoamide dehy 99.2 7.2E-10 1.6E-14 110.9 18.0 149 108-305 184-345 (475)
153 PRK07846 mycothione reductase; 99.2 7.1E-10 1.5E-14 110.1 17.7 148 108-305 167-323 (451)
154 PRK07804 L-aspartate oxidase; 99.2 3.2E-10 7E-15 115.0 15.5 144 106-249 15-212 (541)
155 KOG2820 FAD-dependent oxidored 99.2 1.8E-10 3.9E-15 105.5 12.1 145 106-251 6-216 (399)
156 PRK11749 dihydropyrimidine deh 99.2 3.9E-11 8.5E-16 119.4 8.5 182 44-282 90-286 (457)
157 PRK08010 pyridine nucleotide-d 99.2 9.4E-10 2E-14 109.1 18.1 148 108-305 159-315 (441)
158 PRK06912 acoL dihydrolipoamide 99.2 1E-10 2.2E-15 116.5 11.1 167 109-282 2-183 (458)
159 PTZ00153 lipoamide dehydrogena 99.2 1.2E-10 2.6E-15 119.6 11.7 36 104-139 113-148 (659)
160 PRK07251 pyridine nucleotide-d 99.2 1.1E-09 2.4E-14 108.5 18.2 148 108-305 158-314 (438)
161 TIGR00275 flavoprotein, HI0933 99.2 3.1E-10 6.7E-15 111.0 14.0 136 111-248 1-161 (400)
162 TIGR02053 MerA mercuric reduct 99.2 8E-11 1.7E-15 117.4 10.1 161 108-279 1-176 (463)
163 PRK06452 sdhA succinate dehydr 99.2 4.2E-10 9.1E-15 114.7 15.3 143 106-248 4-199 (566)
164 PRK08274 tricarballylate dehyd 99.2 5.5E-10 1.2E-14 111.5 15.8 142 107-248 4-193 (466)
165 PRK05976 dihydrolipoamide dehy 99.2 1.2E-09 2.6E-14 109.3 18.1 150 108-305 181-341 (472)
166 PRK06912 acoL dihydrolipoamide 99.2 1.3E-09 2.8E-14 108.5 18.3 148 108-305 171-328 (458)
167 PLN00128 Succinate dehydrogena 99.2 1.2E-09 2.6E-14 112.5 18.4 143 107-249 50-252 (635)
168 PRK08401 L-aspartate oxidase; 99.2 5.2E-10 1.1E-14 111.6 15.1 142 108-250 2-178 (466)
169 TIGR01350 lipoamide_DH dihydro 99.2 1.9E-10 4.2E-15 114.7 11.9 164 108-280 2-181 (461)
170 TIGR01423 trypano_reduc trypan 99.2 1.1E-10 2.4E-15 116.6 10.1 170 106-283 2-201 (486)
171 PRK14727 putative mercuric red 99.2 4.1E-10 8.9E-15 112.7 14.0 165 106-280 15-199 (479)
172 PRK09078 sdhA succinate dehydr 99.2 7.1E-10 1.5E-14 113.7 16.0 145 105-249 10-214 (598)
173 PRK09564 coenzyme A disulfide 99.2 8.6E-10 1.9E-14 109.4 16.2 154 108-305 150-315 (444)
174 PRK12814 putative NADPH-depend 99.2 1.9E-09 4.1E-14 111.7 19.1 106 201-312 371-504 (652)
175 TIGR01813 flavo_cyto_c flavocy 99.2 6.3E-10 1.4E-14 110.3 14.9 140 109-248 1-193 (439)
176 PRK07845 flavoprotein disulfid 99.2 2.8E-10 6.2E-15 113.5 12.4 171 108-280 2-188 (466)
177 TIGR03452 mycothione_red mycot 99.2 1.7E-09 3.7E-14 107.5 17.8 148 108-305 170-326 (452)
178 PRK09231 fumarate reductase fl 99.2 1.5E-09 3.2E-14 111.0 17.8 143 107-249 4-198 (582)
179 PTZ00139 Succinate dehydrogena 99.2 8.4E-10 1.8E-14 113.4 16.0 144 106-249 28-231 (617)
180 PRK14727 putative mercuric red 99.2 1.8E-09 3.8E-14 108.2 18.0 147 108-305 189-344 (479)
181 PRK06292 dihydrolipoamide dehy 99.1 1.6E-10 3.4E-15 115.2 10.1 33 107-139 3-35 (460)
182 PLN02464 glycerol-3-phosphate 99.1 4.5E-10 9.7E-15 115.6 13.5 65 186-250 227-299 (627)
183 TIGR01812 sdhA_frdA_Gneg succi 99.1 8.5E-10 1.8E-14 112.8 15.5 141 109-249 1-193 (566)
184 PLN02546 glutathione reductase 99.1 2.1E-09 4.5E-14 109.0 18.0 150 108-305 253-411 (558)
185 PRK06175 L-aspartate oxidase; 99.1 7.2E-10 1.6E-14 109.5 14.3 141 107-248 4-190 (433)
186 COG0665 DadA Glycine/D-amino a 99.1 7.2E-10 1.6E-14 107.7 14.1 65 184-250 149-215 (387)
187 TIGR00551 nadB L-aspartate oxi 99.1 7.9E-10 1.7E-14 110.9 14.6 142 107-249 2-191 (488)
188 PRK14989 nitrite reductase sub 99.1 1.8E-09 3.9E-14 114.3 17.8 155 108-305 146-308 (847)
189 PRK13512 coenzyme A disulfide 99.1 1.5E-09 3.2E-14 107.5 15.8 150 108-305 149-310 (438)
190 PRK14694 putative mercuric red 99.1 3.3E-09 7.1E-14 106.0 18.2 147 108-305 179-333 (468)
191 PRK07121 hypothetical protein; 99.1 1.5E-09 3.2E-14 109.2 15.7 60 189-248 175-240 (492)
192 PRK07057 sdhA succinate dehydr 99.1 1.9E-09 4.2E-14 110.4 16.7 60 190-249 147-213 (591)
193 TIGR01438 TGR thioredoxin and 99.1 4.5E-10 9.7E-15 112.4 11.7 171 107-283 2-194 (484)
194 PRK06467 dihydrolipoamide dehy 99.1 2.8E-09 6.1E-14 106.5 17.4 148 108-305 175-335 (471)
195 PRK06115 dihydrolipoamide dehy 99.1 3.5E-09 7.6E-14 105.7 17.8 148 108-305 175-336 (466)
196 PTZ00058 glutathione reductase 99.1 4E-09 8.6E-14 106.9 18.3 155 108-305 238-430 (561)
197 TIGR02374 nitri_red_nirB nitri 99.1 2.5E-09 5.4E-14 113.0 17.5 154 108-305 141-299 (785)
198 PRK06069 sdhA succinate dehydr 99.1 1.5E-09 3.2E-14 111.1 15.3 144 105-248 3-201 (577)
199 PRK13748 putative mercuric red 99.1 3.3E-09 7.1E-14 108.4 17.7 147 108-305 271-426 (561)
200 PRK07846 mycothione reductase; 99.1 7.6E-10 1.6E-14 109.9 12.7 159 108-279 2-176 (451)
201 PRK07573 sdhA succinate dehydr 99.1 1.7E-09 3.6E-14 111.6 15.6 55 195-249 174-234 (640)
202 PF00070 Pyr_redox: Pyridine n 99.1 1.4E-09 3.1E-14 81.3 11.2 79 109-231 1-80 (80)
203 PRK08205 sdhA succinate dehydr 99.1 2E-09 4.2E-14 110.3 15.9 59 190-248 139-207 (583)
204 PTZ00052 thioredoxin reductase 99.1 3.5E-10 7.6E-15 113.7 10.2 33 107-139 5-37 (499)
205 TIGR01320 mal_quin_oxido malat 99.1 1.3E-09 2.9E-14 108.8 14.2 65 186-250 173-243 (483)
206 PRK08958 sdhA succinate dehydr 99.1 2.3E-09 5.1E-14 109.6 16.3 143 107-249 7-208 (588)
207 PRK06292 dihydrolipoamide dehy 99.1 4.9E-09 1.1E-13 104.5 18.2 150 108-306 170-330 (460)
208 PF13454 NAD_binding_9: FAD-NA 99.1 9.6E-10 2.1E-14 93.2 11.2 134 111-245 1-155 (156)
209 PRK05257 malate:quinone oxidor 99.1 1.9E-09 4.1E-14 107.8 15.1 66 186-251 178-250 (494)
210 TIGR03169 Nterm_to_SelD pyridi 99.1 4.3E-09 9.3E-14 101.7 17.0 156 108-312 146-314 (364)
211 PRK05945 sdhA succinate dehydr 99.1 1.6E-09 3.4E-14 110.8 14.5 143 107-249 3-199 (575)
212 PRK08071 L-aspartate oxidase; 99.1 1.4E-09 2.9E-14 109.7 13.8 140 107-248 3-191 (510)
213 PRK06263 sdhA succinate dehydr 99.1 2.1E-09 4.5E-14 109.3 15.2 142 106-248 6-198 (543)
214 PRK12809 putative oxidoreducta 99.1 1.8E-10 3.9E-15 119.1 7.6 148 44-249 259-409 (639)
215 PRK08641 sdhA succinate dehydr 99.1 4.8E-09 1E-13 107.4 17.5 142 107-248 3-201 (589)
216 PRK06854 adenylylsulfate reduc 99.1 2.2E-09 4.9E-14 110.2 14.9 143 106-248 10-196 (608)
217 PTZ00052 thioredoxin reductase 99.1 7.1E-09 1.5E-13 104.2 18.2 148 108-305 183-339 (499)
218 PRK13339 malate:quinone oxidor 99.1 2.8E-09 6.1E-14 106.1 14.9 66 186-251 179-251 (497)
219 PRK09754 phenylpropionate diox 99.1 7.9E-10 1.7E-14 108.1 10.7 107 108-249 4-114 (396)
220 PRK09897 hypothetical protein; 99.1 3.1E-09 6.6E-14 106.7 15.1 176 108-285 2-207 (534)
221 PRK07803 sdhA succinate dehydr 99.1 3.5E-09 7.7E-14 109.1 16.0 143 106-248 7-214 (626)
222 TIGR01438 TGR thioredoxin and 99.0 9.5E-09 2.1E-13 102.9 18.1 149 108-305 181-342 (484)
223 PLN02815 L-aspartate oxidase 99.0 2.3E-09 4.9E-14 109.5 13.8 142 106-248 28-223 (594)
224 PRK05329 anaerobic glycerol-3- 99.0 1.6E-08 3.4E-13 99.0 18.9 119 189-307 257-419 (422)
225 PRK08275 putative oxidoreducta 99.0 3.8E-09 8.3E-14 107.6 15.3 143 106-248 8-201 (554)
226 TIGR01176 fum_red_Fp fumarate 99.0 4.5E-09 9.8E-14 107.3 15.7 143 107-249 3-197 (580)
227 PRK12771 putative glutamate sy 99.0 7.2E-09 1.6E-13 105.9 17.2 107 200-311 314-446 (564)
228 PF07992 Pyr_redox_2: Pyridine 99.0 2.9E-10 6.2E-15 100.1 5.8 110 109-248 1-123 (201)
229 PRK07395 L-aspartate oxidase; 99.0 2E-09 4.4E-14 109.3 12.5 141 106-247 8-197 (553)
230 PRK08626 fumarate reductase fl 99.0 6.5E-09 1.4E-13 107.5 16.3 59 191-249 158-222 (657)
231 TIGR01292 TRX_reduct thioredox 99.0 9.4E-09 2E-13 96.2 15.4 146 108-307 142-299 (300)
232 TIGR01372 soxA sarcosine oxida 99.0 3.2E-09 7E-14 114.7 13.9 144 106-283 162-331 (985)
233 COG0445 GidA Flavin-dependent 99.0 6.6E-10 1.4E-14 108.0 7.6 139 107-247 4-158 (621)
234 PRK09564 coenzyme A disulfide 99.0 1.1E-09 2.5E-14 108.6 9.4 109 109-248 2-116 (444)
235 TIGR03378 glycerol3P_GlpB glyc 99.0 2E-08 4.3E-13 97.4 17.1 117 188-304 260-418 (419)
236 COG0578 GlpA Glycerol-3-phosph 99.0 4.8E-09 1E-13 103.7 13.0 65 186-251 159-229 (532)
237 TIGR01317 GOGAT_sm_gam glutama 99.0 1E-09 2.2E-14 109.9 8.3 146 44-249 94-242 (485)
238 PRK12844 3-ketosteroid-delta-1 99.0 6.9E-09 1.5E-13 105.7 14.4 58 191-248 208-270 (557)
239 PLN02852 ferredoxin-NADP+ redu 99.0 8.3E-10 1.8E-14 109.6 7.5 135 107-284 26-181 (491)
240 PRK07512 L-aspartate oxidase; 99.0 3.9E-09 8.4E-14 106.5 12.4 59 190-248 135-198 (513)
241 TIGR03452 mycothione_red mycot 99.0 1.1E-09 2.3E-14 108.9 8.1 160 107-279 2-179 (452)
242 KOG1335 Dihydrolipoamide dehyd 99.0 4.9E-09 1.1E-13 97.6 11.2 167 106-285 38-227 (506)
243 PRK13984 putative oxidoreducta 99.0 1.3E-09 2.8E-14 112.3 8.4 180 45-283 234-432 (604)
244 PRK09077 L-aspartate oxidase; 99.0 1.3E-08 2.8E-13 103.3 15.4 143 106-249 7-209 (536)
245 PRK12845 3-ketosteroid-delta-1 99.0 1.2E-08 2.5E-13 103.9 15.0 58 192-249 218-280 (564)
246 TIGR01811 sdhA_Bsu succinate d 99.0 1.5E-08 3.2E-13 104.0 15.8 60 190-249 128-198 (603)
247 PRK12842 putative succinate de 99.0 1.8E-08 3.9E-13 103.1 16.3 58 191-248 214-276 (574)
248 PRK07843 3-ketosteroid-delta-1 99.0 2.2E-08 4.8E-13 102.0 16.7 57 192-248 209-270 (557)
249 PRK06134 putative FAD-binding 98.9 8E-09 1.7E-13 105.8 13.3 61 189-249 215-280 (581)
250 TIGR01316 gltA glutamate synth 98.9 2.4E-08 5.2E-13 99.2 16.3 149 108-308 273-449 (449)
251 COG1148 HdrA Heterodisulfide r 98.9 3.3E-09 7.2E-14 101.4 9.5 109 197-311 420-547 (622)
252 KOG0404 Thioredoxin reductase 98.9 8.5E-09 1.8E-13 89.4 10.9 152 108-283 9-171 (322)
253 PRK13512 coenzyme A disulfide 98.9 5.4E-09 1.2E-13 103.6 11.1 140 109-282 3-161 (438)
254 PRK04965 NADH:flavorubredoxin 98.9 9.5E-09 2.1E-13 99.8 12.6 136 108-279 3-151 (377)
255 PRK10262 thioredoxin reductase 98.9 1.4E-08 3.1E-13 96.4 13.6 153 108-310 147-316 (321)
256 PRK12770 putative glutamate sy 98.9 1.9E-08 4.1E-13 96.8 14.6 149 108-309 173-350 (352)
257 TIGR03169 Nterm_to_SelD pyridi 98.9 9.3E-09 2E-13 99.3 12.3 106 109-249 1-109 (364)
258 PRK12834 putative FAD-binding 98.9 2.5E-08 5.4E-13 101.6 15.8 34 107-140 4-37 (549)
259 PTZ00153 lipoamide dehydrogena 98.9 4.4E-08 9.5E-13 100.9 17.5 150 108-305 313-493 (659)
260 PRK11749 dihydropyrimidine deh 98.9 3.9E-08 8.5E-13 98.0 16.7 152 108-311 274-454 (457)
261 KOG0399 Glutamate synthase [Am 98.9 5.3E-09 1.1E-13 108.0 10.4 182 44-285 1736-1940(2142)
262 PRK12835 3-ketosteroid-delta-1 98.9 1.5E-08 3.2E-13 103.7 13.8 37 107-143 11-47 (584)
263 TIGR03140 AhpF alkyl hydropero 98.9 1.4E-08 3.1E-13 102.5 13.5 149 108-309 353-513 (515)
264 PTZ00318 NADH dehydrogenase-li 98.9 1.1E-08 2.5E-13 100.8 12.5 109 107-248 10-126 (424)
265 PRK12839 hypothetical protein; 98.9 3.5E-08 7.6E-13 100.7 16.1 60 189-248 212-277 (572)
266 COG3380 Predicted NAD/FAD-depe 98.9 5.4E-09 1.2E-13 93.3 8.5 126 109-244 3-157 (331)
267 TIGR02374 nitri_red_nirB nitri 98.9 6.2E-09 1.3E-13 110.0 10.2 104 110-248 1-109 (785)
268 KOG2853 Possible oxidoreductas 98.9 1.7E-08 3.7E-13 92.7 11.0 66 186-251 238-324 (509)
269 PRK12837 3-ketosteroid-delta-1 98.9 1.9E-08 4.1E-13 101.6 12.6 36 106-142 6-41 (513)
270 PRK14989 nitrite reductase sub 98.9 1.2E-08 2.5E-13 108.2 11.3 105 108-248 4-114 (847)
271 PRK12831 putative oxidoreducta 98.8 1.1E-07 2.5E-12 94.7 17.1 151 108-310 282-462 (464)
272 COG1233 Phytoene dehydrogenase 98.8 2.2E-08 4.9E-13 100.3 12.1 55 191-245 224-279 (487)
273 PTZ00306 NADH-dependent fumara 98.8 3.8E-08 8.3E-13 108.0 14.5 39 105-143 407-445 (1167)
274 PRK12843 putative FAD-binding 98.8 6.4E-08 1.4E-12 99.1 15.3 60 190-249 220-284 (578)
275 TIGR02061 aprA adenosine phosp 98.8 4.7E-08 1E-12 100.0 14.1 140 109-248 1-192 (614)
276 COG0446 HcaD Uncharacterized N 98.8 4.3E-08 9.4E-13 95.7 13.4 137 108-286 137-284 (415)
277 PF06039 Mqo: Malate:quinone o 98.8 4.1E-08 8.9E-13 94.5 12.7 66 187-252 177-249 (488)
278 TIGR02730 carot_isom carotene 98.8 8E-08 1.7E-12 96.7 15.1 57 191-247 229-286 (493)
279 PF13434 K_oxygenase: L-lysine 98.8 1.1E-08 2.5E-13 97.5 8.5 166 107-278 2-199 (341)
280 PRK12770 putative glutamate sy 98.8 2.2E-08 4.8E-13 96.3 10.2 106 107-246 18-129 (352)
281 PRK05335 tRNA (uracil-5-)-meth 98.8 2.9E-08 6.2E-13 96.1 10.7 107 108-217 3-126 (436)
282 TIGR02485 CobZ_N-term precorri 98.8 8.7E-08 1.9E-12 94.8 14.1 60 190-249 122-185 (432)
283 COG0029 NadB Aspartate oxidase 98.8 4E-08 8.7E-13 94.9 11.1 141 109-250 9-199 (518)
284 KOG0405 Pyridine nucleotide-di 98.8 4.1E-08 8.8E-13 90.5 10.6 160 105-285 18-205 (478)
285 PRK13800 putative oxidoreducta 98.8 1E-07 2.2E-12 102.3 15.3 35 107-141 13-47 (897)
286 TIGR00137 gid_trmFO tRNA:m(5)U 98.8 7.8E-08 1.7E-12 93.6 12.8 98 109-217 2-124 (433)
287 PRK15317 alkyl hydroperoxide r 98.8 1.1E-07 2.4E-12 96.2 14.3 150 108-310 352-513 (517)
288 KOG2311 NAD/FAD-utilizing prot 98.8 2.2E-08 4.7E-13 95.7 8.2 139 106-247 27-186 (679)
289 KOG4716 Thioredoxin reductase 98.8 2.3E-07 5E-12 85.3 14.4 173 105-285 17-214 (503)
290 PRK12778 putative bifunctional 98.7 3.2E-07 6.9E-12 96.9 16.8 151 108-310 571-751 (752)
291 PRK07233 hypothetical protein; 98.7 1.5E-07 3.2E-12 92.9 13.4 54 192-246 199-253 (434)
292 KOG2844 Dimethylglycine dehydr 98.7 5.1E-08 1.1E-12 96.6 9.6 67 181-248 177-244 (856)
293 PTZ00188 adrenodoxin reductase 98.7 6.7E-08 1.4E-12 95.0 9.9 97 107-248 39-139 (506)
294 COG4529 Uncharacterized protei 98.7 4.3E-07 9.3E-12 87.9 15.0 176 108-283 2-210 (474)
295 COG1252 Ndh NADH dehydrogenase 98.7 9.1E-08 2E-12 92.2 10.3 108 108-250 4-114 (405)
296 COG1053 SdhA Succinate dehydro 98.7 8.8E-08 1.9E-12 96.8 10.4 143 105-247 4-202 (562)
297 KOG1336 Monodehydroascorbate/f 98.7 2E-07 4.4E-12 89.6 12.1 134 108-283 214-354 (478)
298 TIGR02734 crtI_fam phytoene de 98.7 4.3E-07 9.4E-12 91.6 14.9 56 191-246 219-275 (502)
299 TIGR03143 AhpF_homolog putativ 98.7 5.5E-07 1.2E-11 91.8 15.3 151 108-311 144-311 (555)
300 KOG2404 Fumarate reductase, fl 98.6 1.4E-06 3.1E-11 79.8 15.5 140 109-248 11-207 (477)
301 KOG1335 Dihydrolipoamide dehyd 98.6 4E-07 8.8E-12 85.1 11.6 131 108-281 212-356 (506)
302 PLN02612 phytoene desaturase 98.6 1.6E-06 3.5E-11 88.5 17.0 54 192-245 309-364 (567)
303 PRK13977 myosin-cross-reactive 98.6 1.3E-06 2.8E-11 87.6 15.4 57 191-247 226-293 (576)
304 KOG2495 NADH-dehydrogenase (ub 98.6 5.6E-07 1.2E-11 85.4 11.9 157 107-312 218-400 (491)
305 PRK11883 protoporphyrinogen ox 98.6 1.3E-06 2.8E-11 86.8 14.6 35 109-143 2-38 (451)
306 KOG2852 Possible oxidoreductas 98.6 6.2E-07 1.4E-11 80.9 10.8 147 107-253 10-214 (380)
307 COG2509 Uncharacterized FAD-de 98.5 1E-06 2.2E-11 84.4 12.5 59 190-248 172-231 (486)
308 PRK12779 putative bifunctional 98.5 3E-06 6.6E-11 90.9 16.8 152 108-311 448-629 (944)
309 PTZ00363 rab-GDP dissociation 98.5 1.7E-06 3.7E-11 85.3 13.7 58 191-248 232-291 (443)
310 KOG1800 Ferredoxin/adrenodoxin 98.5 4.3E-07 9.3E-12 84.9 8.4 133 107-285 20-175 (468)
311 PRK13984 putative oxidoreducta 98.5 4.2E-06 9E-11 86.4 16.7 151 108-310 419-603 (604)
312 TIGR02731 phytoene_desat phyto 98.5 3.9E-06 8.6E-11 83.5 16.0 55 192-246 214-275 (453)
313 PRK09853 putative selenate red 98.5 3.8E-06 8.3E-11 89.5 16.1 150 108-309 669-842 (1019)
314 PF13450 NAD_binding_8: NAD(P) 98.5 1.8E-07 3.9E-12 67.4 4.3 32 112-143 1-32 (68)
315 PRK12775 putative trifunctiona 98.4 7.9E-06 1.7E-10 88.5 17.6 153 108-312 572-758 (1006)
316 COG1232 HemY Protoporphyrinoge 98.4 1.2E-06 2.6E-11 85.7 10.2 34 109-142 2-37 (444)
317 COG3075 GlpB Anaerobic glycero 98.4 1.6E-06 3.5E-11 79.7 9.7 59 189-247 256-317 (421)
318 PRK12416 protoporphyrinogen ox 98.4 4.7E-06 1E-10 83.2 13.9 38 206-244 239-277 (463)
319 TIGR01372 soxA sarcosine oxida 98.4 7.7E-06 1.7E-10 88.8 16.0 145 108-310 318-473 (985)
320 COG3573 Predicted oxidoreducta 98.4 3.9E-06 8.5E-11 77.3 11.5 34 107-140 5-38 (552)
321 PRK12809 putative oxidoreducta 98.3 1.6E-05 3.5E-10 82.5 16.8 151 108-310 452-636 (639)
322 TIGR01317 GOGAT_sm_gam glutama 98.3 2.4E-05 5.1E-10 78.6 17.4 167 108-311 284-481 (485)
323 COG1231 Monoamine oxidase [Ami 98.3 3.7E-06 8E-11 80.9 10.2 37 106-142 6-42 (450)
324 KOG2665 Predicted FAD-dependen 98.3 2.9E-06 6.3E-11 77.6 8.9 145 106-250 47-260 (453)
325 TIGR03197 MnmC_Cterm tRNA U-34 98.3 5.3E-06 1.1E-10 80.7 10.8 64 186-251 130-194 (381)
326 TIGR03315 Se_ygfK putative sel 98.2 2.7E-05 5.8E-10 83.4 15.7 144 108-306 667-837 (1012)
327 KOG1346 Programmed cell death 98.2 8.3E-06 1.8E-10 77.2 8.8 157 108-309 348-521 (659)
328 KOG0042 Glycerol-3-phosphate d 98.1 1.4E-06 3E-11 84.8 3.2 66 187-252 220-292 (680)
329 KOG0405 Pyridine nucleotide-di 98.1 4.1E-05 8.9E-10 71.1 12.0 153 107-307 189-350 (478)
330 KOG0029 Amine oxidase [Seconda 98.1 3.4E-06 7.4E-11 84.2 5.4 39 105-143 13-51 (501)
331 PRK07208 hypothetical protein; 98.1 4.9E-06 1.1E-10 83.4 5.5 37 107-143 4-40 (479)
332 PF08491 SE: Squalene epoxidas 98.0 3.2E-05 6.9E-10 70.6 9.9 41 267-307 127-167 (276)
333 COG0492 TrxB Thioredoxin reduc 98.0 9.8E-05 2.1E-09 69.3 13.1 147 108-309 144-301 (305)
334 PLN02576 protoporphyrinogen ox 98.0 6E-06 1.3E-10 83.2 5.4 37 107-143 12-49 (496)
335 TIGR00031 UDP-GALP_mutase UDP- 98.0 6.6E-06 1.4E-10 79.4 5.2 34 108-141 2-35 (377)
336 COG2907 Predicted NAD/FAD-bind 98.0 1.4E-05 3E-10 74.2 6.6 34 107-141 8-41 (447)
337 TIGR02733 desat_CrtD C-3',4' d 98.0 7.1E-06 1.5E-10 82.6 5.2 56 191-246 232-293 (492)
338 COG3349 Uncharacterized conser 97.9 7.9E-06 1.7E-10 80.0 4.4 35 109-143 2-36 (485)
339 PLN02268 probable polyamine ox 97.9 1E-05 2.2E-10 80.1 5.1 35 109-143 2-36 (435)
340 KOG1336 Monodehydroascorbate/f 97.9 3.8E-05 8.2E-10 74.3 8.6 102 107-246 74-180 (478)
341 TIGR00562 proto_IX_ox protopor 97.9 1E-05 2.2E-10 80.7 5.0 36 108-143 3-42 (462)
342 PF00732 GMC_oxred_N: GMC oxid 97.9 7.5E-06 1.6E-10 76.7 3.4 33 108-140 1-34 (296)
343 COG3486 IucD Lysine/ornithine 97.9 0.00012 2.7E-09 69.5 11.3 137 105-250 3-160 (436)
344 KOG4254 Phytoene desaturase [C 97.9 3.9E-05 8.4E-10 73.5 7.9 56 191-246 264-320 (561)
345 COG1251 NirB NAD(P)H-nitrite r 97.9 5.9E-05 1.3E-09 76.5 9.4 153 109-306 147-305 (793)
346 COG1206 Gid NAD(FAD)-utilizing 97.9 3.5E-05 7.6E-10 71.0 6.6 109 108-218 4-128 (439)
347 COG0562 Glf UDP-galactopyranos 97.8 2.6E-05 5.6E-10 71.8 5.1 36 108-143 2-37 (374)
348 KOG3923 D-aspartate oxidase [A 97.8 0.00012 2.6E-09 66.7 9.3 62 188-263 148-209 (342)
349 KOG2495 NADH-dehydrogenase (ub 97.8 0.00017 3.7E-09 68.9 10.6 148 105-285 53-234 (491)
350 PRK02106 choline dehydrogenase 97.8 2.8E-05 6.1E-10 79.6 5.4 35 106-140 4-39 (560)
351 TIGR02462 pyranose_ox pyranose 97.8 3.2E-05 6.9E-10 78.0 5.3 36 108-143 1-36 (544)
352 TIGR03377 glycerol3P_GlpA glyc 97.7 0.00021 4.6E-09 72.4 11.2 65 186-250 123-193 (516)
353 KOG3851 Sulfide:quinone oxidor 97.7 1.5E-05 3.3E-10 73.1 2.1 103 105-247 37-145 (446)
354 PLN02568 polyamine oxidase 97.7 4.4E-05 9.5E-10 77.4 5.6 50 193-245 244-294 (539)
355 PLN02529 lysine-specific histo 97.7 4.8E-05 1E-09 79.3 5.9 37 105-141 158-194 (738)
356 PLN02676 polyamine oxidase 97.7 5.7E-05 1.2E-09 75.9 5.9 40 206-246 245-285 (487)
357 TIGR02732 zeta_caro_desat caro 97.6 5.9E-05 1.3E-09 75.5 4.9 55 193-247 221-284 (474)
358 PF13434 K_oxygenase: L-lysine 97.6 0.00056 1.2E-08 65.5 10.5 129 106-245 189-339 (341)
359 PLN02328 lysine-specific histo 97.6 0.0001 2.2E-09 77.3 5.9 36 106-141 237-272 (808)
360 KOG2960 Protein involved in th 97.6 6.1E-05 1.3E-09 65.3 3.4 34 107-140 76-111 (328)
361 COG1251 NirB NAD(P)H-nitrite r 97.6 0.00039 8.5E-09 70.7 9.5 109 108-250 4-116 (793)
362 KOG2755 Oxidoreductase [Genera 97.5 8E-05 1.7E-09 66.6 3.9 30 110-139 2-33 (334)
363 TIGR03862 flavo_PP4765 unchara 97.5 0.00096 2.1E-08 64.4 11.3 58 189-249 84-143 (376)
364 PLN02487 zeta-carotene desatur 97.5 0.00013 2.8E-09 74.4 5.2 55 192-246 296-359 (569)
365 TIGR02352 thiamin_ThiO glycine 97.5 0.00037 8.1E-09 66.2 8.0 67 185-252 131-198 (337)
366 KOG4716 Thioredoxin reductase 97.4 0.0011 2.5E-08 61.5 9.4 151 108-306 199-364 (503)
367 PLN02852 ferredoxin-NADP+ redu 97.4 0.0072 1.6E-07 60.5 15.8 76 232-311 339-424 (491)
368 TIGR01810 betA choline dehydro 97.3 0.00022 4.9E-09 72.5 3.9 32 109-140 1-33 (532)
369 COG2303 BetA Choline dehydroge 97.2 0.00025 5.4E-09 72.1 4.0 35 106-140 6-40 (542)
370 PLN03000 amine oxidase 97.2 0.00044 9.6E-09 72.9 5.9 37 106-142 183-219 (881)
371 PLN02785 Protein HOTHEAD 97.2 0.00034 7.3E-09 71.7 4.7 34 106-140 54-87 (587)
372 PRK01438 murD UDP-N-acetylmura 97.2 0.00097 2.1E-08 67.0 7.9 32 108-139 17-48 (480)
373 PRK05675 sdhA succinate dehydr 97.2 0.0043 9.3E-08 63.7 12.7 60 190-249 125-191 (570)
374 COG0446 HcaD Uncharacterized N 97.2 0.0023 4.9E-08 62.4 10.0 105 110-250 1-109 (415)
375 PF00996 GDI: GDP dissociation 97.2 0.015 3.2E-07 57.3 15.2 53 191-244 232-286 (438)
376 PLN02976 amine oxidase 97.1 0.00062 1.3E-08 74.6 5.5 35 107-141 693-727 (1713)
377 KOG1276 Protoporphyrinogen oxi 97.1 0.00061 1.3E-08 65.2 4.4 36 107-142 11-48 (491)
378 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0025 5.5E-08 62.9 9.1 48 200-248 53-104 (427)
379 KOG0685 Flavin-containing amin 97.0 0.00086 1.9E-08 65.1 4.9 37 107-143 21-58 (498)
380 PLN02172 flavin-containing mon 96.6 0.0017 3.8E-08 64.7 3.9 33 108-140 205-237 (461)
381 COG3634 AhpF Alkyl hydroperoxi 96.6 0.023 4.9E-07 53.3 10.7 74 107-229 354-429 (520)
382 PRK06567 putative bifunctional 96.6 0.032 6.9E-07 59.8 13.1 94 199-312 648-773 (1028)
383 KOG1346 Programmed cell death 96.6 0.0076 1.7E-07 57.6 7.4 126 106-250 177-314 (659)
384 PF06100 Strep_67kDa_ant: Stre 96.5 0.068 1.5E-06 52.8 13.6 56 191-246 207-273 (500)
385 KOG1238 Glucose dehydrogenase/ 96.3 0.0036 7.7E-08 63.2 3.8 36 105-140 55-91 (623)
386 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0072 1.6E-07 51.1 4.5 32 109-140 1-32 (157)
387 PF00743 FMO-like: Flavin-bind 96.1 0.026 5.6E-07 57.3 8.8 35 107-141 183-217 (531)
388 PF02737 3HCDH_N: 3-hydroxyacy 95.8 0.013 2.8E-07 50.8 4.6 32 109-140 1-32 (180)
389 COG0569 TrkA K+ transport syst 95.4 0.019 4.2E-07 51.5 4.4 52 109-160 2-66 (225)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 95.4 0.016 3.5E-07 50.4 3.7 32 109-140 2-33 (185)
391 PRK02705 murD UDP-N-acetylmura 95.4 0.019 4.2E-07 57.3 4.7 32 109-140 2-33 (459)
392 KOG0404 Thioredoxin reductase 95.4 0.11 2.4E-06 46.0 8.6 121 108-278 158-292 (322)
393 PF02558 ApbA: Ketopantoate re 95.3 0.025 5.4E-07 47.2 4.4 30 110-139 1-30 (151)
394 PRK06249 2-dehydropantoate 2-r 95.0 0.036 7.8E-07 52.4 5.0 33 107-139 5-37 (313)
395 PRK07819 3-hydroxybutyryl-CoA 94.9 0.034 7.3E-07 51.9 4.6 33 108-140 6-38 (286)
396 TIGR01470 cysG_Nterm siroheme 94.9 0.043 9.4E-07 48.5 4.9 33 108-140 10-42 (205)
397 PRK06129 3-hydroxyacyl-CoA deh 94.8 0.035 7.7E-07 52.3 4.5 32 109-140 4-35 (308)
398 PRK06719 precorrin-2 dehydroge 94.8 0.046 1E-06 46.2 4.7 33 107-139 13-45 (157)
399 PRK14106 murD UDP-N-acetylmura 94.8 0.042 9.2E-07 54.6 5.2 33 108-140 6-38 (450)
400 PRK04148 hypothetical protein; 94.8 0.08 1.7E-06 43.2 5.8 88 108-209 18-106 (134)
401 PF13241 NAD_binding_7: Putati 94.7 0.023 5.1E-07 44.3 2.4 33 107-139 7-39 (103)
402 TIGR01816 sdhA_forward succina 94.4 0.17 3.8E-06 51.9 8.7 60 190-249 118-183 (565)
403 PRK06718 precorrin-2 dehydroge 94.3 0.074 1.6E-06 46.9 5.1 32 108-139 11-42 (202)
404 PRK05708 2-dehydropantoate 2-r 94.2 0.063 1.4E-06 50.6 4.6 32 108-139 3-34 (305)
405 TIGR02354 thiF_fam2 thiamine b 94.2 0.08 1.7E-06 46.6 4.9 33 108-140 22-55 (200)
406 PF13738 Pyr_redox_3: Pyridine 94.1 0.046 1E-06 47.7 3.4 34 107-140 167-200 (203)
407 PRK08293 3-hydroxybutyryl-CoA 94.1 0.065 1.4E-06 50.0 4.5 33 108-140 4-36 (287)
408 PRK07066 3-hydroxybutyryl-CoA 94.1 0.081 1.8E-06 50.1 5.1 33 108-140 8-40 (321)
409 PRK09260 3-hydroxybutyryl-CoA 94.0 0.07 1.5E-06 49.8 4.5 32 109-140 3-34 (288)
410 COG3486 IucD Lysine/ornithine 94.0 0.19 4.1E-06 48.3 7.2 44 204-247 291-340 (436)
411 PRK12921 2-dehydropantoate 2-r 93.9 0.073 1.6E-06 49.9 4.5 30 109-138 2-31 (305)
412 PF13478 XdhC_C: XdhC Rossmann 93.8 0.059 1.3E-06 44.3 3.2 32 110-141 1-32 (136)
413 PF00899 ThiF: ThiF family; I 93.8 0.084 1.8E-06 43.2 4.0 33 108-140 3-36 (135)
414 KOG0399 Glutamate synthase [Am 93.7 0.33 7.2E-06 52.3 9.0 178 106-310 1923-2121(2142)
415 PRK06035 3-hydroxyacyl-CoA deh 93.7 0.086 1.9E-06 49.3 4.5 32 109-140 5-36 (291)
416 PRK06522 2-dehydropantoate 2-r 93.7 0.085 1.8E-06 49.4 4.5 31 109-139 2-32 (304)
417 PRK07530 3-hydroxybutyryl-CoA 93.7 0.089 1.9E-06 49.2 4.5 33 108-140 5-37 (292)
418 PF02254 TrkA_N: TrkA-N domain 93.6 0.11 2.3E-06 41.1 4.3 31 110-140 1-31 (116)
419 PF01262 AlaDh_PNT_C: Alanine 93.6 0.1 2.2E-06 44.6 4.4 32 108-139 21-52 (168)
420 PF01488 Shikimate_DH: Shikima 93.5 0.13 2.8E-06 42.2 4.8 33 107-139 12-45 (135)
421 PRK05808 3-hydroxybutyryl-CoA 93.4 0.1 2.3E-06 48.4 4.5 32 109-140 5-36 (282)
422 TIGR00518 alaDH alanine dehydr 93.4 0.11 2.3E-06 50.4 4.8 34 107-140 167-200 (370)
423 PRK09424 pntA NAD(P) transhydr 93.3 0.1 2.2E-06 52.5 4.5 34 107-140 165-198 (509)
424 PRK15116 sulfur acceptor prote 93.2 0.15 3.2E-06 47.0 5.1 34 108-141 31-65 (268)
425 PRK12475 thiamine/molybdopteri 93.2 0.14 2.9E-06 49.0 5.0 33 108-140 25-58 (338)
426 cd00401 AdoHcyase S-adenosyl-L 93.1 0.11 2.5E-06 50.8 4.4 33 108-140 203-235 (413)
427 TIGR02356 adenyl_thiF thiazole 93.1 0.16 3.6E-06 44.7 5.0 33 108-140 22-55 (202)
428 cd05292 LDH_2 A subgroup of L- 93.0 0.13 2.8E-06 48.5 4.5 32 109-140 2-35 (308)
429 PF01593 Amino_oxidase: Flavin 93.0 0.087 1.9E-06 51.1 3.4 51 196-247 214-265 (450)
430 cd01483 E1_enzyme_family Super 92.9 0.18 4E-06 41.6 4.9 33 109-141 1-34 (143)
431 PRK14620 NAD(P)H-dependent gly 92.9 0.14 3E-06 48.7 4.5 31 109-139 2-32 (326)
432 PRK08229 2-dehydropantoate 2-r 92.7 0.14 3.1E-06 48.8 4.5 32 108-139 3-34 (341)
433 PRK07688 thiamine/molybdopteri 92.6 0.18 3.8E-06 48.3 4.9 33 108-140 25-58 (339)
434 TIGR02355 moeB molybdopterin s 92.6 0.22 4.9E-06 45.1 5.3 34 108-141 25-59 (240)
435 COG1004 Ugd Predicted UDP-gluc 92.6 0.16 3.4E-06 48.8 4.4 32 109-140 2-33 (414)
436 PRK06130 3-hydroxybutyryl-CoA 92.6 0.18 3.9E-06 47.5 4.8 33 108-140 5-37 (311)
437 cd01487 E1_ThiF_like E1_ThiF_l 92.5 0.2 4.3E-06 43.1 4.7 32 109-140 1-33 (174)
438 PRK14618 NAD(P)H-dependent gly 92.4 0.19 4.2E-06 47.7 5.0 33 108-140 5-37 (328)
439 PRK05690 molybdopterin biosynt 92.4 0.21 4.5E-06 45.5 4.9 34 107-140 32-66 (245)
440 COG0686 Ald Alanine dehydrogen 92.3 0.11 2.4E-06 48.1 2.9 34 107-140 168-201 (371)
441 KOG4405 GDP dissociation inhib 92.3 0.17 3.6E-06 48.6 4.1 42 106-147 7-48 (547)
442 PRK08328 hypothetical protein; 92.2 0.23 5E-06 44.8 4.9 33 108-140 28-61 (231)
443 cd00757 ThiF_MoeB_HesA_family 92.2 0.24 5.2E-06 44.5 4.9 33 108-140 22-55 (228)
444 COG5044 MRS6 RAB proteins gera 92.2 0.25 5.5E-06 46.9 5.1 38 106-143 5-42 (434)
445 PLN02545 3-hydroxybutyryl-CoA 92.1 0.2 4.4E-06 46.8 4.6 32 109-140 6-37 (295)
446 PLN03209 translocon at the inn 92.1 0.43 9.4E-06 48.5 7.1 32 109-140 82-114 (576)
447 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.18 3.9E-06 49.7 4.4 33 108-140 4-36 (415)
448 PRK14619 NAD(P)H-dependent gly 92.1 0.24 5.3E-06 46.7 5.1 33 108-140 5-37 (308)
449 TIGR03026 NDP-sugDHase nucleot 92.1 0.17 3.6E-06 49.9 4.1 32 109-140 2-33 (411)
450 PRK12549 shikimate 5-dehydroge 92.0 0.23 5E-06 46.2 4.7 32 108-139 128-160 (284)
451 TIGR03736 PRTRC_ThiF PRTRC sys 91.9 0.25 5.5E-06 44.8 4.8 34 107-140 11-55 (244)
452 PRK08644 thiamine biosynthesis 91.9 0.27 5.9E-06 43.7 4.9 33 108-140 29-62 (212)
453 TIGR02964 xanthine_xdhC xanthi 91.8 0.25 5.4E-06 45.0 4.6 35 107-141 100-134 (246)
454 TIGR02733 desat_CrtD C-3',4' d 91.8 0.62 1.3E-05 46.9 8.0 35 108-142 2-36 (492)
455 TIGR01763 MalateDH_bact malate 91.8 0.22 4.8E-06 46.9 4.4 33 108-140 2-35 (305)
456 PRK00094 gpsA NAD(P)H-dependen 91.7 0.23 5E-06 46.9 4.6 32 109-140 3-34 (325)
457 PF00056 Ldh_1_N: lactate/mala 91.6 0.3 6.4E-06 40.4 4.5 31 109-139 2-35 (141)
458 PRK07417 arogenate dehydrogena 91.5 0.23 5.1E-06 46.0 4.2 32 109-140 2-33 (279)
459 cd01080 NAD_bind_m-THF_DH_Cycl 91.4 0.31 6.8E-06 41.6 4.6 33 107-139 44-77 (168)
460 PRK00066 ldh L-lactate dehydro 91.4 0.35 7.6E-06 45.8 5.3 34 107-140 6-41 (315)
461 COG1063 Tdh Threonine dehydrog 91.3 0.26 5.7E-06 47.3 4.5 31 109-139 171-202 (350)
462 cd00755 YgdL_like Family of ac 91.3 0.34 7.4E-06 43.6 4.9 33 108-140 12-45 (231)
463 PRK05562 precorrin-2 dehydroge 91.1 0.3 6.6E-06 43.6 4.3 33 107-139 25-57 (223)
464 TIGR00936 ahcY adenosylhomocys 91.0 0.29 6.3E-06 47.8 4.4 34 107-140 195-228 (406)
465 TIGR00561 pntA NAD(P) transhyd 91.0 0.3 6.5E-06 49.1 4.6 34 107-140 164-197 (511)
466 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.0 0.29 6.3E-06 49.4 4.6 33 108-140 6-38 (503)
467 PRK04308 murD UDP-N-acetylmura 90.9 0.37 8.1E-06 47.9 5.3 33 108-140 6-38 (445)
468 PF01593 Amino_oxidase: Flavin 90.9 0.54 1.2E-05 45.5 6.3 27 117-143 1-27 (450)
469 PRK08223 hypothetical protein; 90.9 0.36 7.8E-06 44.8 4.7 33 108-140 28-61 (287)
470 PRK02472 murD UDP-N-acetylmura 90.9 0.36 7.9E-06 47.9 5.1 33 108-140 6-38 (447)
471 COG0493 GltD NADPH-dependent g 90.8 0.85 1.8E-05 45.4 7.5 30 108-137 263-293 (457)
472 PRK08268 3-hydroxy-acyl-CoA de 90.7 0.41 9E-06 48.4 5.4 33 108-140 8-40 (507)
473 cd05291 HicDH_like L-2-hydroxy 90.6 0.35 7.6E-06 45.5 4.6 33 109-141 2-36 (306)
474 cd01492 Aos1_SUMO Ubiquitin ac 90.6 0.38 8.2E-06 42.2 4.4 33 108-140 22-55 (197)
475 cd05311 NAD_bind_2_malic_enz N 90.5 0.4 8.6E-06 43.1 4.6 33 108-140 26-61 (226)
476 PRK07531 bifunctional 3-hydrox 90.5 0.3 6.5E-06 49.3 4.2 33 108-140 5-37 (495)
477 cd01485 E1-1_like Ubiquitin ac 90.4 0.41 8.9E-06 42.0 4.5 33 108-140 20-53 (198)
478 cd01075 NAD_bind_Leu_Phe_Val_D 90.3 0.51 1.1E-05 41.5 5.0 32 108-139 29-60 (200)
479 PRK06223 malate dehydrogenase; 90.2 0.42 9.1E-06 45.0 4.7 34 108-141 3-37 (307)
480 PRK11730 fadB multifunctional 90.2 0.35 7.5E-06 51.1 4.5 33 108-140 314-346 (715)
481 PLN02353 probable UDP-glucose 90.1 0.37 8.1E-06 48.2 4.5 33 108-140 2-36 (473)
482 PRK03369 murD UDP-N-acetylmura 90.1 0.4 8.6E-06 48.3 4.7 32 108-139 13-44 (488)
483 PRK05476 S-adenosyl-L-homocyst 90.1 0.42 9E-06 47.0 4.7 33 108-140 213-245 (425)
484 TIGR03467 HpnE squalene-associ 90.1 0.86 1.9E-05 44.4 7.0 54 192-246 198-253 (419)
485 TIGR01915 npdG NADPH-dependent 90.1 0.41 9E-06 42.7 4.3 32 109-140 2-34 (219)
486 PTZ00082 L-lactate dehydrogena 90.1 0.48 1.1E-05 44.9 5.0 34 108-141 7-41 (321)
487 PF03446 NAD_binding_2: NAD bi 90.0 0.44 9.5E-06 40.3 4.2 33 108-140 2-34 (163)
488 PRK08306 dipicolinate synthase 90.0 0.41 8.9E-06 44.9 4.4 34 107-140 152-185 (296)
489 PRK09496 trkA potassium transp 90.0 0.4 8.6E-06 47.6 4.6 32 109-140 2-33 (453)
490 cd01484 E1-2_like Ubiquitin ac 90.0 0.48 1E-05 42.8 4.6 32 109-140 1-33 (234)
491 TIGR02437 FadB fatty oxidation 89.9 0.38 8.2E-06 50.8 4.5 34 107-140 313-346 (714)
492 PRK06153 hypothetical protein; 89.9 0.39 8.4E-06 46.3 4.1 33 108-140 177-210 (393)
493 cd01078 NAD_bind_H4MPT_DH NADP 89.9 0.56 1.2E-05 40.8 4.9 32 108-139 29-61 (194)
494 PRK12548 shikimate 5-dehydroge 89.8 0.47 1E-05 44.3 4.6 32 108-139 127-159 (289)
495 PRK10669 putative cation:proto 89.7 0.42 9.1E-06 49.0 4.6 33 108-140 418-450 (558)
496 PRK15057 UDP-glucose 6-dehydro 89.7 0.42 9E-06 46.6 4.3 31 109-140 2-32 (388)
497 PRK01710 murD UDP-N-acetylmura 89.6 0.46 1E-05 47.4 4.7 33 108-140 15-47 (458)
498 COG1748 LYS9 Saccharopine dehy 89.6 0.48 1.1E-05 45.9 4.6 33 108-140 2-35 (389)
499 cd01488 Uba3_RUB Ubiquitin act 89.4 0.58 1.3E-05 43.6 4.9 32 109-140 1-33 (291)
500 cd05293 LDH_1 A subgroup of L- 89.4 0.6 1.3E-05 44.1 5.0 34 107-140 3-38 (312)
No 1
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=8.6e-51 Score=403.84 Aligned_cols=365 Identities=79% Similarity=1.243 Sum_probs=301.8
Q ss_pred CccccccccccccccccccCCCccchhhhhhcccccccccCCCCccccceeecc-----CCCCcccccc-----Cccchh
Q 017240 1 MEYYCLGARNFAAMAVSPFPTGRTRRKALRVRTKQSAVDCNHSSYKVTARATSN-----NAGSESCVAV-----KEEDYI 70 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~ 70 (375)
|| |+|++|+++||++++|.++.++|+.+.+.... ... ....++|. ..+++.|+.. ++++++
T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (529)
T PLN02697 1 ME--CLGARNFAAMAVSTSPGWSSRRRRPVRRGNDV--RSS-----RGLSCTVVATRGGKSGSESCVVVDEEFADEEDYI 71 (529)
T ss_pred CC--cccccchhheeeeccCCcCcccccccccccch--hhc-----cCceEEEeeccCcCcCCcceeeeccccccHhhhh
Confidence 99 99999999999999999887777764333222 111 11123332 2577888876 677899
Q ss_pred hcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcH
Q 017240 71 KAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWE 150 (375)
Q Consensus 71 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~ 150 (375)
+.++.+..++++++.+++.+|+++.+++++++.....+||+||||||||+++|+.|++.|++|+|||+..++.+++|+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~ 151 (529)
T PLN02697 72 KAGGSELLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWE 151 (529)
T ss_pred hccccchhHHHHHhcCCccccccccccCCCCCcccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccch
Confidence 99999999999999999999999999999998556779999999999999999999999999999999988889999999
Q ss_pred HHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecC
Q 017240 151 DEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH 230 (375)
Q Consensus 151 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~ 230 (375)
+.++.+++.+.+.+.|....++++.......+.+|+.+++..|.+.|.+.+.+.|+++++++|+++..++++...+.+.+
T Consensus 152 ~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~d 231 (529)
T PLN02697 152 DEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACED 231 (529)
T ss_pred hHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcC
Confidence 99999999888888999888888766665667888899999999999999999999988889999987766333455667
Q ss_pred CeEEecCEEEEccCCCCccccc---------c------------------------------------------------
Q 017240 231 DMIVPCRLATVASGAASGKLLE---------Y------------------------------------------------ 253 (375)
Q Consensus 231 g~~i~a~~vI~A~G~~s~~~~~---------~------------------------------------------------ 253 (375)
|.++.|+.||+|+|.+|..+.+ +
T Consensus 232 G~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP 311 (529)
T PLN02697 232 GRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMP 311 (529)
T ss_pred CcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEee
Confidence 7789999999999998842200 0
Q ss_pred --------------------------------------------cCceeeecCCCCCccCCCEEEEccCCCCCCCCChHH
Q 017240 254 --------------------------------------------EEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYS 289 (375)
Q Consensus 254 --------------------------------------------~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~G 289 (375)
.+++.+|++++++...++++.|||+|+++||+||||
T Consensus 312 ~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~vhPsTGy~ 391 (529)
T PLN02697 312 MSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYS 391 (529)
T ss_pred cCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCcccCCCeeEeehhhcCCCCchhhh
Confidence 123445555555566789999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHhh
Q 017240 290 VVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFF 369 (375)
Q Consensus 290 i~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~~ 369 (375)
+..++..|+.+|++|+++++.++...... .........+.|..+|+.++.+++.++.||++++..++++++++||++||
T Consensus 392 v~~~l~~A~~~A~~ia~~l~~~~~~~~~~-~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff 470 (529)
T PLN02697 392 VVRSLSEAPKYASVIARILKNVSSGGKLG-TSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFF 470 (529)
T ss_pred HHHHHHhHHHHHHHHHHHhhCCccccccc-cccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999998664211110 01144678899999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017240 370 RLPKWY 375 (375)
Q Consensus 370 ~l~~~~ 375 (375)
+||+++
T Consensus 471 ~L~~~~ 476 (529)
T PLN02697 471 RLPKWM 476 (529)
T ss_pred CCCHHH
Confidence 999874
No 2
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=2.4e-39 Score=317.51 Aligned_cols=276 Identities=42% Similarity=0.789 Sum_probs=231.6
Q ss_pred cccCCCCCCC-CCCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC--CCCCCcCcHHHHHhcCCchhhhhhcccce
Q 017240 94 LADKLPPISI-GNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--FTNNYGVWEDEFRDLGLEGCIEHVWRDTV 170 (375)
Q Consensus 94 ~~~~~~~~~~-~~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~--~~~~~g~~~~~l~~~g~~~~~~~~~~~~~ 170 (375)
+..+++...+ ....|||+||||||||+++|..|++.|++|+|||+.+. ..++||+|.+.++.+++.+.+.+.|....
T Consensus 14 ~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~ 93 (447)
T PLN02463 14 LDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAV 93 (447)
T ss_pred ccccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcE
Confidence 3444544432 23468999999999999999999999999999998653 45789999999999999888888998888
Q ss_pred EEeCCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 171 VYIDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
++++.........+|+.+++..|.+.|.+++.+.|++++.++|+++...++ .+.|++++|.+++||+||+|+|..|...
T Consensus 94 v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~-~~~V~~~dG~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 94 VYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEES-KSLVVCDDGVKIQASLVLDATGFSRCLV 172 (447)
T ss_pred EEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCC-eEEEEECCCCEEEcCEEEECcCCCcCcc
Confidence 877765555567789999999999999999999999998789999988766 6788899998999999999999877521
Q ss_pred c---------c--------------------------------------------c------------------------
Q 017240 251 L---------E--------------------------------------------Y------------------------ 253 (375)
Q Consensus 251 ~---------~--------------------------------------------~------------------------ 253 (375)
. + +
T Consensus 173 ~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~ 252 (447)
T PLN02463 173 QYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGL 252 (447)
T ss_pred CCCCCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCC
Confidence 0 0 0
Q ss_pred -------------------------cCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHH
Q 017240 254 -------------------------EEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 254 -------------------------~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.+++++|+++..+...++++.|||++++++|.+||||..++..++.+|++|++++
T Consensus 253 ~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~ 332 (447)
T PLN02463 253 PMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYL 332 (447)
T ss_pred CHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 1234455555555667899999999999999999999999999999999999999
Q ss_pred hcCCCccccccccchhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 017240 309 KHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWY 375 (375)
Q Consensus 309 ~~~~~~~~L~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~~~l~~~~ 375 (375)
+.+.... +. ..+...+.|+.+|+.++++++.+++|||+.+++++.+++++||.+||+||+++
T Consensus 333 ~~~~~~~-~~----~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~ 394 (447)
T PLN02463 333 GSSRSNS-FR----GDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHY 394 (447)
T ss_pred hcCCCcC-CC----hHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHH
Confidence 8654311 22 56788999999999999999999999999999999999999999999999874
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.97 E-value=9.2e-30 Score=247.80 Aligned_cols=254 Identities=46% Similarity=0.748 Sum_probs=201.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC--CCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~--~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
||+||||||||+++|+.|++.|++|+|||+.+.. ..+|++|...++.+++...+.+.|.....+...........+|.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 8999999999999999999999999999987643 35788898888878877777777776544443333334456777
Q ss_pred eecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc-----cc----c-----
Q 017240 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK-----LL----E----- 252 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~-----~~----~----- 252 (375)
.+++..|.+.|.+.+.+.|++++.+.|+.+..+++..+.|++.+|.+++|+.||+|+|.+|.. .. +
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G~ 160 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGV 160 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEEE
Confidence 899999999999999989999887788888876444678888888889999999999988711 00 0
Q ss_pred ------------------c--c--------C----c-eeee---------------------------------------
Q 017240 253 ------------------Y--E--------E----W-SYIP--------------------------------------- 260 (375)
Q Consensus 253 ------------------~--~--------~----~-~~~p--------------------------------------- 260 (375)
+ . . + +.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (388)
T TIGR01790 161 EARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQGWQI 240 (388)
T ss_pred EEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHHcCCee
Confidence 0 0 0 0 1123
Q ss_pred ------------cCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccchhHHHH
Q 017240 261 ------------VGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISM 328 (375)
Q Consensus 261 ------------~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~~~~~ 328 (375)
+....+...+++++|||+|+.++|.+|||++.+++++..+|+.|.++++.+ .....
T Consensus 241 ~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~------------~~~~~ 308 (388)
T TIGR01790 241 KTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS------------SELAT 308 (388)
T ss_pred eEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC------------HHHHH
Confidence 212222346689999999999999999999999999999999999998653 13556
Q ss_pred HHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHhhcCCCC
Q 017240 329 QAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKW 374 (375)
Q Consensus 329 ~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~~~l~~~ 374 (375)
+.|...|..+..+...++.++..++..+++++.+++|+.||++|..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~ 354 (388)
T TIGR01790 309 AAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEE 354 (388)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCHH
Confidence 7788888888888889999999999999999999999999999864
No 4
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.96 E-value=1.5e-27 Score=230.76 Aligned_cols=247 Identities=39% Similarity=0.612 Sum_probs=194.9
Q ss_pred cEEEECCCHHHHHHHHHH--HHCCCcEEEECCCCCC--CCCCcCcHHHHHhcC-CchhhhhhcccceEEeCCCCCeeecC
Q 017240 109 DLVVIGCGPAGLALAAES--AKLGLNVGLIGPDLPF--TNNYGVWEDEFRDLG-LEGCIEHVWRDTVVYIDEDEPILIGR 183 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~L--a~~G~~V~liE~~~~~--~~~~g~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
|||||||||||+++|++| ++.|.+|+|||++... .+++ .|......++ ++..+.+.|....++.+.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~ 79 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDY 79 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEEccc
Confidence 899999999999999999 8889999999987654 4433 3433333333 67778899998888887776655557
Q ss_pred CceeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc----ccc------
Q 017240 184 AYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL----LEY------ 253 (375)
Q Consensus 184 ~~~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~----~~~------ 253 (375)
+|..+++..|.+.|.+.+.+.|+.++++.|++|...++ .+.|++.+|.+++|+.||+|+|..+... .+.
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~-~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G~~v 158 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD-GVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYGWEV 158 (374)
T ss_pred ceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc-eEEEEECCCCEEEeeEEEECCCcccccccccccceeEEEEE
Confidence 88899999999999999996666655999999998877 6788899998999999999999654321 110
Q ss_pred -----------------------------------------------------------------------------cCc
Q 017240 254 -----------------------------------------------------------------------------EEW 256 (375)
Q Consensus 254 -----------------------------------------------------------------------------~~~ 256 (375)
.|.
T Consensus 159 ~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~ 238 (374)
T PF05834_consen 159 ETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILEEER 238 (374)
T ss_pred eccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEEeec
Confidence 355
Q ss_pred eeeec--CCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHhh
Q 017240 257 SYIPV--GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 334 (375)
Q Consensus 257 ~~~p~--~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 334 (375)
++||+ ....+...++++.+|+++++++|.|||++..+++.+..+|+.+.+. + .....|..+
T Consensus 239 G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~---~--------------~~~~~~~~~ 301 (374)
T PF05834_consen 239 GVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG---G--------------APLRAWSPL 301 (374)
T ss_pred ceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc---c--------------ccccccccc
Confidence 67887 5556677888999999999999999999999999998877777643 1 112334566
Q ss_pred CchhhHHHHH-HHHHhHHHHhcCCHHHHHHHHHHhhcCCCC
Q 017240 335 WPQERKRQRA-FFLFGLALILQLDIEGIRTFFRTFFRLPKW 374 (375)
Q Consensus 335 ~~~~~~~~~~-~~~~gl~~~~~~~~~~~~~~f~~~~~l~~~ 374 (375)
|+..+..... ++.++++++...++++.+.||+.||+||..
T Consensus 302 ~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~ 342 (374)
T PF05834_consen 302 WPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPD 342 (374)
T ss_pred cHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCHH
Confidence 7776665544 558899999999999999999999999963
No 5
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.95 E-value=2.9e-26 Score=223.26 Aligned_cols=247 Identities=18% Similarity=0.198 Sum_probs=175.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC--CCCCCcCcHHHHHhcCCchh-hhhhcccceEEeCCCCCeee---
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--FTNNYGVWEDEFRDLGLEGC-IEHVWRDTVVYIDEDEPILI--- 181 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~--~~~~~g~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~--- 181 (375)
|||+||||||||+++|+.|++.|++|+|||+..+ ..+..++....++.+++.+. +...+....++.+.......
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 6999999999999999999999999999998722 23555666677788887543 33444444444333222111
Q ss_pred -cCCc-eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecC------C--eEEecCEEEEccCCCCcccc
Q 017240 182 -GRAY-GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH------D--MIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 182 -~~~~-~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~------g--~~i~a~~vI~A~G~~s~~~~ 251 (375)
...+ +.+++..|++.|.+.+.+.|++++.+.|+++..+++ .+.|++.+ | .+++||+||+|||.+|.+..
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~-~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r 159 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRD-GVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAK 159 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCC-eEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHH
Confidence 1223 369999999999999999999999556999887766 56666542 2 47999999999999875421
Q ss_pred cc----------------------------------c-----C--ceeeec-----------------------------
Q 017240 252 EY----------------------------------E-----E--WSYIPV----------------------------- 261 (375)
Q Consensus 252 ~~----------------------------------~-----~--~~~~p~----------------------------- 261 (375)
.. . . .+++|.
T Consensus 160 ~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~~~~~~~~~~~l~~~~~ 239 (388)
T TIGR02023 160 ELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTHGFDAKQLQANLRRRAG 239 (388)
T ss_pred HcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCCCCCHHHHHHHHHHhhC
Confidence 00 0 0 011220
Q ss_pred ----------------CCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccchhH
Q 017240 262 ----------------GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNEN 325 (375)
Q Consensus 262 ----------------~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~~ 325 (375)
....++..++++++||||+.++|.+|+||+.||.+|..+|++|.++++.++ .. ..+
T Consensus 240 ~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~-~~-------~L~ 311 (388)
T TIGR02023 240 LDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD-AT-------DLR 311 (388)
T ss_pred CCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC-HH-------HHH
Confidence 000012357899999999999999999999999999999999999997542 12 346
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 326 ISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 326 ~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
.|++.|++.|..+....+.++ .+..++++.+++++..+
T Consensus 312 ~Y~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 349 (388)
T TIGR02023 312 HYERKFMKLYGTTFRVLRVLQ-----MVYYRSDRRREVFVEMC 349 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHccCHHHHHHHHHHh
Confidence 899999999988885544433 34567777776666544
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.95 E-value=4.2e-26 Score=224.93 Aligned_cols=255 Identities=17% Similarity=0.157 Sum_probs=174.5
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHHHHhcCCchhh-hhhcccceEEeCCCCCee
Q 017240 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCI-EHVWRDTVVYIDEDEPIL 180 (375)
Q Consensus 104 ~~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 180 (375)
+...|||+||||||||+++|+.|++.|++|+|+|+..+.. +..++....++.+++.... .+.+....++.+......
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 3556999999999999999999999999999999875433 3444555667777776432 222322222222211111
Q ss_pred e-----cCC-ceeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcC--CceEEEEecC-------C--eEEecCEEEEcc
Q 017240 181 I-----GRA-YGRVSRHLLHEELLRRCVESGVSYLSSKVESITEST--SGHRLVACEH-------D--MIVPCRLATVAS 243 (375)
Q Consensus 181 ~-----~~~-~~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~--~~~~~V~~~~-------g--~~i~a~~vI~A~ 243 (375)
+ ..+ .++++|..|++.|.+++.+.|++++...++++.... ++.+.|++.+ | .+++||+||+||
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 1 112 246899999999999999999999955677776422 2245555422 3 479999999999
Q ss_pred CCCCcccccc---------------------------------c------Cc-eeeecCC--------------------
Q 017240 244 GAASGKLLEY---------------------------------E------EW-SYIPVGG-------------------- 263 (375)
Q Consensus 244 G~~s~~~~~~---------------------------------~------~~-~~~p~~~-------------------- 263 (375)
|.+|.+.... . .+ |++|.+.
T Consensus 196 G~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~VG~g~~~~~~~~~~~~~ 275 (450)
T PLN00093 196 GANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVVNKPAIKKYQR 275 (450)
T ss_pred CcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEEEEEEEccCCCChHHHHH
Confidence 9988653110 0 01 3334110
Q ss_pred ---------------------CC------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Q 017240 264 ---------------------SL------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGR 316 (375)
Q Consensus 264 ---------------------~~------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~ 316 (375)
.+ ....++++++||||+.++|.+|+||+.||.+|..+|+++.++++.++...
T Consensus 276 ~l~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~- 354 (450)
T PLN00093 276 ATRNRAKDKIAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMV- 354 (450)
T ss_pred HHHHHhhhhcCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcC-
Confidence 00 12346899999999999999999999999999999999999987542110
Q ss_pred cccccchhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHH
Q 017240 317 LTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 367 (375)
Q Consensus 317 L~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~ 367 (375)
+......|++.|+..|..+.+....+++ ++.. ++..+++|++.
T Consensus 355 ---s~~~L~~Y~~~~~~~~g~~~~~~~~l~~----~~~~-~~~~~~~~~~~ 397 (450)
T PLN00093 355 ---DEADLREYLRKWDKKYWPTYKVLDILQK----VFYR-SNPAREAFVEM 397 (450)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcC-CcHHHHHHHHH
Confidence 0113468999999999999888888887 4544 55555555543
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.95 E-value=8.2e-26 Score=220.44 Aligned_cols=252 Identities=17% Similarity=0.167 Sum_probs=175.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHHHHhcCCchhh-hhhcccceEEeCCCCCeee---
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCI-EHVWRDTVVYIDEDEPILI--- 181 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--- 181 (375)
+||+||||||||+++|+.|++.|++|+|||+..+.. +..++....++.+++.... .+.+.....+.+......+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999876543 3334555667777775432 2233333322222111111
Q ss_pred --cCCc-eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEc--CCceEEEEe--cC-----C--eEEecCEEEEccCCCC
Q 017240 182 --GRAY-GRVSRHLLHEELLRRCVESGVSYLSSKVESITES--TSGHRLVAC--EH-----D--MIVPCRLATVASGAAS 247 (375)
Q Consensus 182 --~~~~-~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~--~~~~~~V~~--~~-----g--~~i~a~~vI~A~G~~s 247 (375)
...+ +.+++..|++.|.+.+.+.|++++...++++... .++.++|+. .+ | .+++|++||+|||.+|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 1122 3699999999999999999999993357776432 222445543 22 3 4799999999999988
Q ss_pred cccccc---------------------------------c------C-ceeeecCC------------------------
Q 017240 248 GKLLEY---------------------------------E------E-WSYIPVGG------------------------ 263 (375)
Q Consensus 248 ~~~~~~---------------------------------~------~-~~~~p~~~------------------------ 263 (375)
.+.... . . .|++|.+.
T Consensus 161 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~~~~~~~~~~~~l~~ 240 (398)
T TIGR02028 161 RVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVAAKPEIKRLQSGIRA 240 (398)
T ss_pred HHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCCCCccHHHHHHhhhh
Confidence 553110 0 0 12333110
Q ss_pred -----------------CC------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccc
Q 017240 264 -----------------SL------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHE 320 (375)
Q Consensus 264 -----------------~~------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~ 320 (375)
.+ ....+++++|||||+.++|.+|+||+.||.+|..+|+++.++++.++... +
T Consensus 241 ~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~----~ 316 (398)
T TIGR02028 241 RAAGKVAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVT----E 316 (398)
T ss_pred hhhhccCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcC----C
Confidence 00 12347899999999999999999999999999999999999987653110 0
Q ss_pred cchhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 321 QSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 321 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
......|++.|+..|..+.+....++. ++.. +++.++++++.+
T Consensus 317 ~~~l~~Y~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 359 (398)
T TIGR02028 317 EGDLAGYLRRWDKEYRPTYRVLDLLQR----VFYR-SNAGREAFVEMC 359 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcC-CcHHHHHHHHHh
Confidence 113468999999999999999998888 6666 888888888766
No 8
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.94 E-value=1.2e-24 Score=212.36 Aligned_cols=248 Identities=22% Similarity=0.214 Sum_probs=176.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC----CCcCcHHHHHhcCCchh--hhhhcccceEEeCCCCCee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----NYGVWEDEFRDLGLEGC--IEHVWRDTVVYIDEDEPIL 180 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~----~~g~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~~~~ 180 (375)
+|||+||||||||++||+.|++.|++|+|+|+....+. ..++....++.+..... +.........++. .....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~-~~~~~ 81 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFP-GEKVA 81 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEec-CCceE
Confidence 59999999999999999999999999999999765542 12345555666544332 3344444445444 22222
Q ss_pred ecC--C-ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccc---
Q 017240 181 IGR--A-YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEY--- 253 (375)
Q Consensus 181 ~~~--~-~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~--- 253 (375)
+.. . ...+++..|+++|.+++++.|++++ ++.++.+..++++.+.+...++.++++++||+|+|.++......
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~ 161 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLK 161 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCC
Confidence 222 2 3379999999999999999999999 99999999888755555555557899999999999887543110
Q ss_pred ------------------------------------cCce----------------------------------------
Q 017240 254 ------------------------------------EEWS---------------------------------------- 257 (375)
Q Consensus 254 ------------------------------------~~~~---------------------------------------- 257 (375)
.-.+
T Consensus 162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~~~~l~~f~~~~~~~~ 241 (396)
T COG0644 162 DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLERFKEHPAIRK 241 (396)
T ss_pred CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCCcCCCchHHHHHHHHhCcccch
Confidence 0001
Q ss_pred -------------eeecCCCCC--ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccc
Q 017240 258 -------------YIPVGGSLP--NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQS 322 (375)
Q Consensus 258 -------------~~p~~~~~~--~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~ 322 (375)
.+|..+... ...+++++|||||+.++|.+|.|+..|+.+|..+|++|.+++..+ ..
T Consensus 242 ~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~------- 312 (396)
T COG0644 242 LLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EE------- 312 (396)
T ss_pred hccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hh-------
Confidence 112111111 346799999999999999999999999999999999999998765 22
Q ss_pred hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 323 NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 323 ~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
....|++.|...+..+.......+. .+..+.+..++.+.+.+
T Consensus 313 ~l~~Y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 354 (396)
T COG0644 313 ALAEYERLLRKSLAREDLKSLRLLK----LLLRLLDRTLPALIKLL 354 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh----hHHhHhhhhHHHHHHHH
Confidence 3346999999888877777766666 33333334444554444
No 9
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.93 E-value=9.1e-25 Score=212.91 Aligned_cols=258 Identities=16% Similarity=0.199 Sum_probs=176.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC----C-----CcCc---HHHHHhcCCchhhhhh-------
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----N-----YGVW---EDEFRDLGLEGCIEHV------- 165 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~----~-----~g~~---~~~l~~~g~~~~~~~~------- 165 (375)
...+||+||||||+|+++|+.|++.|++|+|||+...... . ..+. .+.++.+|+.+.+...
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 4569999999999999999999999999999998753210 0 1222 2456667765433211
Q ss_pred -----cccceEEeCCCCCeeecCCce-eecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecCCeEEecC
Q 017240 166 -----WRDTVVYIDEDEPILIGRAYG-RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCR 237 (375)
Q Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~-~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~ 237 (375)
|....+.++.... ....++ .+++..+.+.|.+.+.+. |++++ +++|+++..+++ .+.|++.+|.++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 83 LETWEWETAHVVFDAAEL--KLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD-GWELTLADGEEIQAK 159 (391)
T ss_pred EEEEeCCCCeEEeccccc--CCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC-eEEEEECCCCEEEeC
Confidence 1112222221110 012223 688999999999998876 99999 999999987766 577888888889999
Q ss_pred EEEEccCCCCcccccc----------------------------------cC-ceeeec---------------------
Q 017240 238 LATVASGAASGKLLEY----------------------------------EE-WSYIPV--------------------- 261 (375)
Q Consensus 238 ~vI~A~G~~s~~~~~~----------------------------------~~-~~~~p~--------------------- 261 (375)
+||+|+|.+|..+... .+ ..++|.
T Consensus 160 ~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~ 239 (391)
T PRK08020 160 LVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQA 239 (391)
T ss_pred EEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHHC
Confidence 9999999998653110 00 000110
Q ss_pred -------------------------------CC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHH
Q 017240 262 -------------------------------GG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 262 -------------------------------~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.. ...+..++++++|||||.++|..|||++.+++|+..+++.+.+..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 319 (391)
T PRK08020 240 MSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNAR 319 (391)
T ss_pred CCHHHHHHHHHHHhhhhccceEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 00 001346789999999999999999999999999999999999876
Q ss_pred hcCCC---ccccccccc--------hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 309 KHDHS---RGRLTHEQS--------NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 309 ~~~~~---~~~L~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
+.+.+ ...|.. |+ ........+.+.|..+....+.+|+++|..+..+++ ++++|.+.
T Consensus 320 ~~~~~~~~~~~L~~-Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~~ 387 (391)
T PRK08020 320 SYGEAWASEAVLKR-YQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGV--LKRQALKY 387 (391)
T ss_pred hcCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHH--HHHHHHHH
Confidence 54321 233331 11 111233444566777777888999999999999987 77766553
No 10
>PRK08013 oxidoreductase; Provisional
Probab=99.93 E-value=9.2e-25 Score=213.50 Aligned_cols=265 Identities=20% Similarity=0.292 Sum_probs=175.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC---------CcCcH---HHHHhcCCchhhhhh----cccce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---------YGVWE---DEFRDLGLEGCIEHV----WRDTV 170 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~---------~g~~~---~~l~~~g~~~~~~~~----~~~~~ 170 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+..... .++.. +.|+.+|+.+.+... .....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 489999999999999999999999999999987653211 12222 567888875543221 11111
Q ss_pred EEeCCC-CCe-----eecCC-ce-eecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEE
Q 017240 171 VYIDED-EPI-----LIGRA-YG-RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (375)
Q Consensus 171 ~~~~~~-~~~-----~~~~~-~~-~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI 240 (375)
++.... ... ..+.+ .+ .+++..+.+.|.+.+.+. |++++ +++|++++.+++ .+.|++.+|+++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN-EAFLTLKDGSMLTARLVV 161 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-eEEEEEcCCCEEEeeEEE
Confidence 111110 000 11222 22 688999999999999885 89999 999999987766 677888888899999999
Q ss_pred EccCCCCcccccc--------------------------------------------cCc--e-----------------
Q 017240 241 VASGAASGKLLEY--------------------------------------------EEW--S----------------- 257 (375)
Q Consensus 241 ~A~G~~s~~~~~~--------------------------------------------~~~--~----------------- 257 (375)
+|||.+|.++... .+. .
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (400)
T PRK08013 162 GADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAP 241 (400)
T ss_pred EeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHcCC
Confidence 9999999775211 000 0
Q ss_pred --------------------------eeecCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 258 --------------------------YIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 258 --------------------------~~p~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
.+|... ...+..++++++|||||.++|..|||+|.+++|+..+++.|...+.
T Consensus 242 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~ 321 (400)
T PRK08013 242 EEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHR 321 (400)
T ss_pred HHHHHHHHHHHHhHhhCceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 000000 0024578999999999999999999999999999999999998775
Q ss_pred cCCC-c--cccccccch--------hHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHH----HHhhcCCCC
Q 017240 310 HDHS-R--GRLTHEQSN--------ENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFF----RTFFRLPKW 374 (375)
Q Consensus 310 ~~~~-~--~~L~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f----~~~~~l~~~ 374 (375)
.+.+ . ..|. .|+. .....+....++..+......+|.+++.++..+++ +++++ ..++.+|+|
T Consensus 322 ~~~~~~~~~~L~-~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~--~~~~~~~~~~g~~~~~~~ 398 (400)
T PRK08013 322 QGKDIGQHLYLR-RYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPG--VKPQLIRQAMGLNDLPEW 398 (400)
T ss_pred cCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHH--HHHHHHHHHccCcCCccc
Confidence 4432 1 1233 1111 01111223334444555677788888888877765 33333 234457887
Q ss_pred C
Q 017240 375 Y 375 (375)
Q Consensus 375 ~ 375 (375)
.
T Consensus 399 ~ 399 (400)
T PRK08013 399 L 399 (400)
T ss_pred c
Confidence 4
No 11
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=2e-24 Score=211.49 Aligned_cols=257 Identities=21% Similarity=0.237 Sum_probs=173.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC----------C-CCCcCcH---HHHHhcCCchhhhhh--cc-cc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF----------T-NNYGVWE---DEFRDLGLEGCIEHV--WR-DT 169 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~----------~-~~~g~~~---~~l~~~g~~~~~~~~--~~-~~ 169 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+.. . ....+.. +.++.+|+.+.+... .. ..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999987521 0 1112222 567777775544321 11 11
Q ss_pred eEEeCCCCC--eee-----c-CCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEE
Q 017240 170 VVYIDEDEP--ILI-----G-RAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLA 239 (375)
Q Consensus 170 ~~~~~~~~~--~~~-----~-~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~v 239 (375)
....+.... ..+ . ..++ .+++..+.+.|.+.+.+.|++++ +++|++++.+++ .+.|++.+|.++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGD-DWLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEE
Confidence 111111110 001 1 1223 67888999999999988899999 999999988776 57788888888999999
Q ss_pred EEccCCCCcccccc-----------------------------------cCceeeecC----------------------
Q 017240 240 TVASGAASGKLLEY-----------------------------------EEWSYIPVG---------------------- 262 (375)
Q Consensus 240 I~A~G~~s~~~~~~-----------------------------------~~~~~~p~~---------------------- 262 (375)
|+|||.+|.++... ....++|..
T Consensus 161 VgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 240 (405)
T PRK05714 161 VAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERL 240 (405)
T ss_pred EEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHH
Confidence 99999999765211 000001100
Q ss_pred --------------------C-----------------CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 263 --------------------G-----------------SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 263 --------------------~-----------------~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
. ...+..++++++|||||.++|..|||++.+++||..+++.|.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~ 320 (405)
T PRK05714 241 MALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLL 320 (405)
T ss_pred HCCCHHHHHHHHHHHHHHHhCCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHH
Confidence 0 001345799999999999999999999999999999999998
Q ss_pred HHHhcCC---Cccccccccc--------hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHH
Q 017240 306 YILKHDH---SRGRLTHEQS--------NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 367 (375)
Q Consensus 306 ~~l~~~~---~~~~L~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~ 367 (375)
..+..+. ....|.. |+ ......+.+...|..+......+|++++..+..+++ ++++|..
T Consensus 321 ~~~~~g~~~~~~~~L~~-Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~ 390 (405)
T PRK05714 321 HAAERGERLADVRVLSR-FERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPE--AKALFVR 390 (405)
T ss_pred HHHhcCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHH--HHHHHHH
Confidence 7764432 1233331 11 112223444455666666788889999988888876 6665544
No 12
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.93 E-value=4.2e-24 Score=207.89 Aligned_cols=249 Identities=23% Similarity=0.250 Sum_probs=171.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC-CC---CCCCcCc---HHHHHhcCC-chhhhhhc-c-cce------
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-PF---TNNYGVW---EDEFRDLGL-EGCIEHVW-R-DTV------ 170 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~-~~---~~~~g~~---~~~l~~~g~-~~~~~~~~-~-~~~------ 170 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+ .. +....+. .+.|+.+|+ +....... . ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999982 21 1222232 366788888 44332111 1 111
Q ss_pred ---EEeCCCCCeeecCCceeecHHHHHHHHHHHHHHCC-ceEE-EEEEEEEEEcCCceEEEEec-CCeEEecCEEEEccC
Q 017240 171 ---VYIDEDEPILIGRAYGRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACE-HDMIVPCRLATVASG 244 (375)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~V~~~-~g~~i~a~~vI~A~G 244 (375)
..++.... ........+.+..+.+.|.+.+.+.+ ++++ +++|+.+..+++ .+.+++. +|+++.||+||+|||
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAEL-GRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEeccccc-CCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceEEEEcCCCcEEecCEEEECCC
Confidence 11111111 11223347999999999999998865 9999 999999999887 4558777 998999999999999
Q ss_pred CCCcccccc-----------------------------------------------------------------------
Q 017240 245 AASGKLLEY----------------------------------------------------------------------- 253 (375)
Q Consensus 245 ~~s~~~~~~----------------------------------------------------------------------- 253 (375)
.+|.++...
T Consensus 160 ~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (387)
T COG0654 160 ANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEF 239 (387)
T ss_pred CchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHH
Confidence 999765211
Q ss_pred ---------cC--ce---------eeecC--CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 254 ---------EE--WS---------YIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 254 ---------~~--~~---------~~p~~--~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.. .. .+|+. ...++..++++++|||||.++|..|||+|.+++|+..+++.|.+..+.+
T Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~ 319 (387)
T COG0654 240 LRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPG 319 (387)
T ss_pred HHHHHHhcCcccccceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcC
Confidence 00 00 01110 0012456789999999999999999999999999999999999998854
Q ss_pred CCcccccc---ccc----hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCC
Q 017240 312 HSRGRLTH---EQS----NENISMQAWNTLWPQERKRQRAFFLFGLALILQLD 357 (375)
Q Consensus 312 ~~~~~L~~---~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~ 357 (375)
.+...|.. .+. ............+..+....+.++..++..+....
T Consensus 320 ~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 320 ADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhhccCc
Confidence 33333331 010 11222234455677777788888888887776665
No 13
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.92 E-value=8.2e-24 Score=206.31 Aligned_cols=259 Identities=20% Similarity=0.233 Sum_probs=174.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--------CCCcCcH---HHHHhcCCchhhhhh----cccce
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--------NNYGVWE---DEFRDLGLEGCIEHV----WRDTV 170 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--------~~~g~~~---~~l~~~g~~~~~~~~----~~~~~ 170 (375)
..+||+||||||+|+++|+.|++.|++|+|||+..... ....++. +.++.+|+.+.+... +....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 35899999999999999999999999999999875321 0112322 456777775544321 11111
Q ss_pred EEeCCCC-Cee-----e-cCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEE
Q 017240 171 VYIDEDE-PIL-----I-GRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (375)
Q Consensus 171 ~~~~~~~-~~~-----~-~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~ 241 (375)
++..... ... . ...++ .+++..+.+.|.+.+++.|++++ +++|+++..+++ .+.|++.+|.++.+|+||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eEEEEECCCCEEEeCEEEE
Confidence 1111110 011 1 11223 68889999999999999999999 999999987766 5778888888899999999
Q ss_pred ccCCCCccccc---------c-------------c------------C-ceeee--------------------------
Q 017240 242 ASGAASGKLLE---------Y-------------E------------E-WSYIP-------------------------- 260 (375)
Q Consensus 242 A~G~~s~~~~~---------~-------------~------------~-~~~~p-------------------------- 260 (375)
|+|.+|..... + . . ..++|
T Consensus 164 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~ 243 (392)
T PRK08773 164 ADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEA 243 (392)
T ss_pred ecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHH
Confidence 99999854311 0 0 0 00001
Q ss_pred ---------------------------cCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 261 ---------------------------VGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 261 ---------------------------~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
... ...+..++++++|||||.++|..|||+|.+++|+..+++.|.+.+..+
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~ 323 (392)
T PRK08773 244 AFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARR 323 (392)
T ss_pred HHHHHHHHHHhhhhcCeEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcC
Confidence 000 002456799999999999999999999999999999999999887544
Q ss_pred CC---cccccc---ccc----hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHH
Q 017240 312 HS---RGRLTH---EQS----NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 367 (375)
Q Consensus 312 ~~---~~~L~~---~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~ 367 (375)
.+ ...|.. .+. ..........+.|..+......+|.+++.++..+++ ++++|..
T Consensus 324 ~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~--~k~~~~~ 387 (392)
T PRK08773 324 ADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPP--LVDALWK 387 (392)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHH--HHHHHHH
Confidence 21 123321 000 111122344455677777888899999999988887 6665543
No 14
>PRK10015 oxidoreductase; Provisional
Probab=99.92 E-value=1.7e-23 Score=205.82 Aligned_cols=259 Identities=17% Similarity=0.206 Sum_probs=164.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC--Cc--CcHHHHHhc--CCc--hhhhhhccc-ceEEeCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN--YG--VWEDEFRDL--GLE--GCIEHVWRD-TVVYIDE 175 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~--~g--~~~~~l~~~--g~~--~~~~~~~~~-~~~~~~~ 175 (375)
+..|||+||||||||++||+.|++.|++|+|||+....+.. .| ++...++.+ ++. ..+...... ...+.+.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeC
Confidence 34699999999999999999999999999999987654321 11 222222222 111 111111111 1111111
Q ss_pred CCCeee----------cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccC
Q 017240 176 DEPILI----------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 176 ~~~~~~----------~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G 244 (375)
...... ......+.|..|++.|.+.+++.|++++ ++.|+++..++++...|.+ ++.++.|+.||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccC
Confidence 111000 0112368899999999999999999999 9999998876553334544 345899999999999
Q ss_pred CCCcccccc----------------------------------cC-----------------------------------
Q 017240 245 AASGKLLEY----------------------------------EE----------------------------------- 255 (375)
Q Consensus 245 ~~s~~~~~~----------------------------------~~----------------------------------- 255 (375)
.+|...... .+
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~d~v~vGv~~~~ 241 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGL 241 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcCCcEEEEEEEeh
Confidence 877543110 00
Q ss_pred ------------------------------------ceeeecCCC---CCccCCCEEEEccCCCCCCC--CChHHHHHHH
Q 017240 256 ------------------------------------WSYIPVGGS---LPNTEQRNLAFGAAASMVHP--ATGYSVVRSL 294 (375)
Q Consensus 256 ------------------------------------~~~~p~~~~---~~~~~~~v~liGdaa~~~~p--~~G~Gi~~al 294 (375)
...+|.++. .....++++++||||+.++| .+|+||+.||
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~ 321 (429)
T PRK10015 242 GDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAI 321 (429)
T ss_pred hhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHH
Confidence 001111111 11236899999999999995 5999999999
Q ss_pred hhHHHHHHHHHHHHhcCC-CccccccccchhHHHHHHHHhhCc-hhhHHHHHHHHHhHH-HHhcCCHHHHHHHHHHhhcC
Q 017240 295 SEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNTLWP-QERKRQRAFFLFGLA-LILQLDIEGIRTFFRTFFRL 371 (375)
Q Consensus 295 ~~a~~~a~~i~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~gl~-~~~~~~~~~~~~~f~~~~~l 371 (375)
.+|..+|+++.+++..++ +.. ....|++.|+..|- ++.+..+.+..+-.. .+...=+.-+.+++..||+.
T Consensus 322 ~SG~~AAe~i~~a~~~~d~s~~-------~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (429)
T PRK10015 322 ASAQAAATTVIAAKERADFSAS-------SLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTI 394 (429)
T ss_pred HHHHHHHHHHHHHHhcCCCccc-------cHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhccc
Confidence 999999999999998654 333 34689999998753 446666655551111 11111234456677777764
No 15
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.92 E-value=1.3e-23 Score=204.48 Aligned_cols=261 Identities=20% Similarity=0.258 Sum_probs=170.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDED 176 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~ 176 (375)
+..+||+||||||+|+++|+.|++.|++|+|||+..... ..++++. +.++.+|+.+.+... +....++....
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 446899999999999999999999999999999986432 2233332 456677765443221 11111211111
Q ss_pred CC-----ee------ecCCce-eecHHHHHHHHHHHHHHC-CceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEcc
Q 017240 177 EP-----IL------IGRAYG-RVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (375)
Q Consensus 177 ~~-----~~------~~~~~~-~v~~~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~ 243 (375)
.. .. ...+++ .+++..+.+.|.+.+.+. ++...+++|+++..+++ .+.|++++|+++.+|+||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRED-EVTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC-eEEEEECCCCEEEEeEEEEec
Confidence 10 00 012334 688999999999998876 46633999999987766 577888888889999999999
Q ss_pred CCCCcccccc----------------------------------cC-ceeee----------------------------
Q 017240 244 GAASGKLLEY----------------------------------EE-WSYIP---------------------------- 260 (375)
Q Consensus 244 G~~s~~~~~~----------------------------------~~-~~~~p---------------------------- 260 (375)
|.+|..+..+ .+ ..++|
T Consensus 164 G~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 243 (388)
T PRK07494 164 GRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAAL 243 (388)
T ss_pred CCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHH
Confidence 9998654111 00 00001
Q ss_pred -------------------------cCCC--CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCC
Q 017240 261 -------------------------VGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHS 313 (375)
Q Consensus 261 -------------------------~~~~--~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~ 313 (375)
.... ..+..++++++|||+|.++|..|||++.+++|+..+++.|.+...+...
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~ 323 (388)
T PRK07494 244 SAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGS 323 (388)
T ss_pred HHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcch
Confidence 0000 0245789999999999999999999999999999999999763322112
Q ss_pred cccccc---ccc----hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 314 RGRLTH---EQS----NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 314 ~~~L~~---~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
...|.. .+. ..........+.|.........+|.++|.++..+++ ++++|...
T Consensus 324 ~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~~~~~~~~ 383 (388)
T PRK07494 324 AAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGP--LRRLFMRE 383 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHH--HHHHHHHH
Confidence 233321 000 011122333344556666778889999998888876 66666543
No 16
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.92 E-value=2.8e-23 Score=202.00 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=168.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC--CC--C-----CcCcH---HHHHhcCCchhhhhh----cccce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TN--N-----YGVWE---DEFRDLGLEGCIEHV----WRDTV 170 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~--~~--~-----~g~~~---~~l~~~g~~~~~~~~----~~~~~ 170 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+.. .. . ..++. +.|+.+|+.+.+... .....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999987521 10 1 13333 667788876544321 11111
Q ss_pred EEeCCCCCee-----e-cCCce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEE
Q 017240 171 VYIDEDEPIL-----I-GRAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (375)
Q Consensus 171 ~~~~~~~~~~-----~-~~~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~ 241 (375)
.+........ . ...++ .+.+..+...|.+.+.+ .|++++ +++|++++.+++ .+.|++.+|.++++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE-GNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC-eEEEEECCCCEEEeeEEEE
Confidence 1111100000 0 11223 45566788888888766 479999 999999988766 5778888998999999999
Q ss_pred ccCCCCcccccc--------------------------------------------cC----------------------
Q 017240 242 ASGAASGKLLEY--------------------------------------------EE---------------------- 255 (375)
Q Consensus 242 A~G~~s~~~~~~--------------------------------------------~~---------------------- 255 (375)
|||.+|.++..+ ..
T Consensus 162 ADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (384)
T PRK08849 162 ADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPE 241 (384)
T ss_pred ecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHHcCCHH
Confidence 999998765211 00
Q ss_pred ---------------------ceeeecCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 256 ---------------------WSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 256 ---------------------~~~~p~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
+..+|... ...+..++++++|||||.++|..|||++.+++|+..+++.+... +..
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~--~~~ 319 (384)
T PRK08849 242 QLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ--GVL 319 (384)
T ss_pred HHHHHHHHHhhhhhCcEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc--CCC
Confidence 00000000 01245679999999999999999999999999999998877531 112
Q ss_pred Cccccccccc--------hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHH
Q 017240 313 SRGRLTHEQS--------NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 367 (375)
Q Consensus 313 ~~~~L~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~ 367 (375)
....|.. |+ ......+.+...|..+......+|++++..+..+++ ++++|.+
T Consensus 320 ~~~~L~~-Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~ 379 (384)
T PRK08849 320 NDASFAR-YERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENSGP--LKTQVLK 379 (384)
T ss_pred cHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccHH--HHHHHHH
Confidence 2233331 11 111222344455665556778889999999988887 6676654
No 17
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.92 E-value=8.3e-24 Score=204.06 Aligned_cols=240 Identities=17% Similarity=0.247 Sum_probs=169.7
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCC--CCCcCcHHHHHhcC---CchhhhhhcccceEEeCCCCCeee
Q 017240 109 DLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT--NNYGVWEDEFRDLG---LEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~--~~~g~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
||+|||||+||+++|+.|++. |++|+|||+.+..+ ..|+.|...+.+.. ++..+.+.|....+..+.. ...+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~-~~~l 79 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKY-RRKL 79 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcch-hhhc
Confidence 899999999999999999987 99999999976543 45666654443322 4556778888877776433 3445
Q ss_pred cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccc-------
Q 017240 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEY------- 253 (375)
Q Consensus 182 ~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~------- 253 (375)
+.+|..+++..|.+.+.+.+.. + ++ +++|+.+. ++ . |++.+|.+++|++||+|+|.++......
T Consensus 80 ~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~-~--v~l~dg~~~~A~~VI~A~G~~s~~~~~~~~Q~f~G 151 (370)
T TIGR01789 80 KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--AD-G--VDLAPGTRINARSVIDCRGFKPSAHLKGGFQVFLG 151 (370)
T ss_pred CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CC-E--EEECCCCEEEeeEEEECCCCCCCccccceeeEEEE
Confidence 6788999999999999876643 3 55 88998883 33 3 4446788999999999999776321100
Q ss_pred ------------------------------------------------------------------------------cC
Q 017240 254 ------------------------------------------------------------------------------EE 255 (375)
Q Consensus 254 ------------------------------------------------------------------------------~~ 255 (375)
.+
T Consensus 152 ~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e 231 (370)
T TIGR01789 152 REMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHE 231 (370)
T ss_pred EEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEee
Confidence 12
Q ss_pred ceeeecCCC--CC---ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccchhHHHHHH
Q 017240 256 WSYIPVGGS--LP---NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQA 330 (375)
Q Consensus 256 ~~~~p~~~~--~~---~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~~~~~~~ 330 (375)
...+|+... .. ....+++++||+|++++|.+|||++.+++++..+++.+. +++..... .
T Consensus 232 ~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~--------------~ 295 (370)
T TIGR01789 232 QGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAA--------------F 295 (370)
T ss_pred eeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhh--------------h
Confidence 344554221 11 224568889999999999999999999998888776653 11100000 0
Q ss_pred HHhhCchhhHHHHHHHHHhHHHHhcCCHHHH-HHHHHHhhcCCCC
Q 017240 331 WNTLWPQERKRQRAFFLFGLALILQLDIEGI-RTFFRTFFRLPKW 374 (375)
Q Consensus 331 w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~-~~~f~~~~~l~~~ 374 (375)
...|+.++++...+++++..+++..+.... .+||++||+||++
T Consensus 296 -~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~ 339 (370)
T TIGR01789 296 -IDSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREG 339 (370)
T ss_pred -hhHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHH
Confidence 145667777777788888887776555544 8999999999964
No 18
>PRK06185 hypothetical protein; Provisional
Probab=99.92 E-value=1.3e-23 Score=205.82 Aligned_cols=262 Identities=16% Similarity=0.120 Sum_probs=170.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCc---HHHHHhcCCchhhhhh----cccceEEeCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFRDLGLEGCIEHV----WRDTVVYIDE 175 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~---~~~l~~~g~~~~~~~~----~~~~~~~~~~ 175 (375)
..+||+||||||+|+++|+.|++.|++|+|||+.+.... ...++ .+.++.+|+.+.+... +....++...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 458999999999999999999999999999998753221 12222 2466777765443221 1111111111
Q ss_pred CCC-------eeecCCce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEE--ecCC-eEEecCEEEEc
Q 017240 176 DEP-------ILIGRAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA--CEHD-MIVPCRLATVA 242 (375)
Q Consensus 176 ~~~-------~~~~~~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~--~~~g-~~i~a~~vI~A 242 (375)
... .....+++ .+++..+.+.|.+.+.+ .|++++ +++|+++..+++....|. ..+| .++++|+||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 100 01112333 67888999999998877 489999 999999987766443343 4456 47999999999
Q ss_pred cCCCCcccccc------------------c---C--------------ceeeec--------------------------
Q 017240 243 SGAASGKLLEY------------------E---E--------------WSYIPV-------------------------- 261 (375)
Q Consensus 243 ~G~~s~~~~~~------------------~---~--------------~~~~p~-------------------------- 261 (375)
||.+|..+... . . ..++|.
T Consensus 165 dG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i~~~~~~~~~~~~~~~~~~~~ 244 (407)
T PRK06185 165 DGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQCGYVIPKGGYAALRAAGLEAF 244 (407)
T ss_pred CCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCCCeEEEEEEecCCCchhhhhhhHHHH
Confidence 99998553110 0 0 000010
Q ss_pred -----------------------------C--CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 262 -----------------------------G--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 262 -----------------------------~--~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. ....+..++++++|||||.++|..|||+|.+++|+..+++.+.+.++.
T Consensus 245 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~ 324 (407)
T PRK06185 245 RERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRR 324 (407)
T ss_pred HHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhcc
Confidence 0 000145679999999999999999999999999999999999998866
Q ss_pred CCC-cccccc---ccc----hhHHHHHHHHhhCchhh--HHHHHHHHHhHHHHhcCCHHHHHHHHHHhh
Q 017240 311 DHS-RGRLTH---EQS----NENISMQAWNTLWPQER--KRQRAFFLFGLALILQLDIEGIRTFFRTFF 369 (375)
Q Consensus 311 ~~~-~~~L~~---~~~----~~~~~~~~w~~~~~~~~--~~~~~~~~~gl~~~~~~~~~~~~~~f~~~~ 369 (375)
++. ...|.. .+. .....++...++|.... .....+|+++|.++..+++ +++++.+.+
T Consensus 325 ~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~~~ 391 (407)
T PRK06185 325 GRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPW--LRRLPARLV 391 (407)
T ss_pred CCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChh--HHHhhHHhe
Confidence 532 233331 010 11223334444555555 5677788889999988876 666666554
No 19
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.91 E-value=4.7e-23 Score=201.61 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=163.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCC-----CCCcCcH---HHHHhcCCchhhhhhc---ccceEEeC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFT-----NNYGVWE---DEFRDLGLEGCIEHVW---RDTVVYID 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~-----~~~g~~~---~~l~~~g~~~~~~~~~---~~~~~~~~ 174 (375)
|||+||||||+|+++|+.|++.| ++|+|||+.+... ...+++. +.++.+|+.+.+.... ....++..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999996 9999999976421 2233333 5677788755443211 11111110
Q ss_pred CC------------CCeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEE
Q 017240 175 ED------------EPILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (375)
Q Consensus 175 ~~------------~~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI 240 (375)
.. .....+.+++ .+++..+.+.|.+.+.+.|++++ +++|+++..+++ .+.|++.+|.++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-GVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EEEEEECCCCEEEeCEEE
Confidence 00 0001123344 68999999999999999999999 999999987766 677888888889999999
Q ss_pred EccCCCCcccccc----------------------------------c-CceeeecC-----------------------
Q 017240 241 VASGAASGKLLEY----------------------------------E-EWSYIPVG----------------------- 262 (375)
Q Consensus 241 ~A~G~~s~~~~~~----------------------------------~-~~~~~p~~----------------------- 262 (375)
+|+|.+|..+... . ...++|..
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~ 240 (403)
T PRK07333 161 AADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALDD 240 (403)
T ss_pred EcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCH
Confidence 9999988654110 0 00001100
Q ss_pred ---------------C------C-----------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 263 ---------------G------S-----------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 263 ---------------~------~-----------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. . ..+..++++++|||||.++|..|||++.++++|..+++.|...++.
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~ 320 (403)
T PRK07333 241 LVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARL 320 (403)
T ss_pred HHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhc
Confidence 0 0 0134679999999999999999999999999999999999988764
Q ss_pred CC---CccccccccchhHHHHH--------------HHHhhCchhhHHHHHHHHHhHHHHhcCCH
Q 017240 311 DH---SRGRLTHEQSNENISMQ--------------AWNTLWPQERKRQRAFFLFGLALILQLDI 358 (375)
Q Consensus 311 ~~---~~~~L~~~~~~~~~~~~--------------~w~~~~~~~~~~~~~~~~~gl~~~~~~~~ 358 (375)
+. ....|. .|++ .....+.........+|.+++.++..+++
T Consensus 321 ~~~~~~~~~L~-------~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 378 (403)
T PRK07333 321 GLDIGSLDVLE-------RYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPK 378 (403)
T ss_pred CCCCCCHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHH
Confidence 32 233332 2322 11223333344555667777777766654
No 20
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.91 E-value=7.8e-23 Score=198.17 Aligned_cols=250 Identities=14% Similarity=0.250 Sum_probs=168.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC-------CCCCcCcH---HHHHhcCCchhhhhhc---ccceEEeC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-------TNNYGVWE---DEFRDLGLEGCIEHVW---RDTVVYID 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~-------~~~~g~~~---~~l~~~g~~~~~~~~~---~~~~~~~~ 174 (375)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. +..++++. +.|+.+|+.+.+.... ....++..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999986321 22333443 4667777654332211 11111111
Q ss_pred CCCC-ee----ecCCce-eecHHHHHHHHHHHHHHCC-ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 175 EDEP-IL----IGRAYG-RVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 175 ~~~~-~~----~~~~~~-~v~~~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
.... .. ....++ .+++..|.+.|.+.+.+.+ ++++ +++++++..+++ .+.|.+.++ ++++|+||+|||.+
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-YSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eEEEEEcCC-EEeeCEEEEeCCCC
Confidence 1110 11 112234 6899999999999998864 8998 999999988776 577888776 89999999999999
Q ss_pred Ccccccc-------------------------------------------cCc-----ee--------------------
Q 017240 247 SGKLLEY-------------------------------------------EEW-----SY-------------------- 258 (375)
Q Consensus 247 s~~~~~~-------------------------------------------~~~-----~~-------------------- 258 (375)
|.++... .+. +.
T Consensus 160 S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~ 239 (374)
T PRK06617 160 SKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFL 239 (374)
T ss_pred chhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHH
Confidence 9775210 000 00
Q ss_pred --------------------eecC--CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Q 017240 259 --------------------IPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGR 316 (375)
Q Consensus 259 --------------------~p~~--~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~ 316 (375)
+|+. ....+..++++++|||||.++|..|||++.+++|+..+++.+.. . ..
T Consensus 240 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----~---~~ 312 (374)
T PRK06617 240 TQRNAGNSLGKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----N---GT 312 (374)
T ss_pred HHHhhchhcCceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----c---ch
Confidence 0000 00124567999999999999999999999999999999888731 1 12
Q ss_pred ccc---cc----chhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 317 LTH---EQ----SNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 317 L~~---~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
|.. .+ ......++.....|.........+|.++|..+..+++ ++++|.+.
T Consensus 313 L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~~ 369 (374)
T PRK06617 313 LQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINNFKP--IKNLITSY 369 (374)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHH--HHHHHHHH
Confidence 221 00 0112233344455666667788899999999999887 77776654
No 21
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.91 E-value=6.6e-23 Score=200.78 Aligned_cols=250 Identities=23% Similarity=0.275 Sum_probs=166.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC---C-----CCCcCcH---HHHHhcCCchhhhhh----cccceE
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---T-----NNYGVWE---DEFRDLGLEGCIEHV----WRDTVV 171 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~---~-----~~~g~~~---~~l~~~g~~~~~~~~----~~~~~~ 171 (375)
.+||+||||||+|+++|+.|++.|++|+|||+..+. . ...++.. +.|+.+|+.+.+... +....+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 489999999999999999999999999999986321 1 1123333 567788876554321 111112
Q ss_pred EeCCCCC-ee-----e-cCCce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEE
Q 017240 172 YIDEDEP-IL-----I-GRAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (375)
Q Consensus 172 ~~~~~~~-~~-----~-~~~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~ 241 (375)
+...... .. . ...++ .+.+..+.+.|.+.+.+ .|++++ +++|+++..+++ .+.|++.+|++++||+||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES-EAWLTLDNGQALTAKLVVG 162 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-eEEEEECCCCEEEeCEEEE
Confidence 1111100 00 1 11234 56778888999998877 479999 999999987766 6788888888999999999
Q ss_pred ccCCCCcccccc--------------------------------------------cCc---------------------
Q 017240 242 ASGAASGKLLEY--------------------------------------------EEW--------------------- 256 (375)
Q Consensus 242 A~G~~s~~~~~~--------------------------------------------~~~--------------------- 256 (375)
|||.+|..+... .+.
T Consensus 163 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~ 242 (405)
T PRK08850 163 ADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSD 242 (405)
T ss_pred eCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCH
Confidence 999998765211 000
Q ss_pred ------------------------eeeecCCC--CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 257 ------------------------SYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 257 ------------------------~~~p~~~~--~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
..+|.... ..+..++++++|||||.++|..|||++.+++|+..+++.|...++.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~ 322 (405)
T PRK08850 243 EQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQ 322 (405)
T ss_pred HHHHHHHHHHHhhhhCcEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 00010000 1245779999999999999999999999999999999999987754
Q ss_pred CCC---ccccccccch--------hHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCH
Q 017240 311 DHS---RGRLTHEQSN--------ENISMQAWNTLWPQERKRQRAFFLFGLALILQLDI 358 (375)
Q Consensus 311 ~~~---~~~L~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~ 358 (375)
+.+ ...|.. |+. ...........+.........+|.+++.++..+++
T Consensus 323 ~~~~~~~~~L~~-Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~ 380 (405)
T PRK08850 323 GRDIGLKRNLRG-YERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPG 380 (405)
T ss_pred CCCcchHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHH
Confidence 332 223321 110 11111233344444455567788888888888776
No 22
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.91 E-value=3.5e-23 Score=204.50 Aligned_cols=250 Identities=21% Similarity=0.218 Sum_probs=166.7
Q ss_pred ccEEEECCCHHHHHHHHHHHH----CCCcEEEECCCC--CCC-------------CCCcCcH---HHHHhcCCchhhhhh
Q 017240 108 LDLVVIGCGPAGLALAAESAK----LGLNVGLIGPDL--PFT-------------NNYGVWE---DEFRDLGLEGCIEHV 165 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~----~G~~V~liE~~~--~~~-------------~~~g~~~---~~l~~~g~~~~~~~~ 165 (375)
|||+||||||+|+++|+.|++ .|++|+|||+.+ ... ...++.. +.++.+|+.+.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999843 211 1233333 566777775554321
Q ss_pred -cc-c-ceEEeCCCCC--eee-----cCCce-eecHHHHHHHHHHHHHHCC---ceEE-EEEEEEEEEc------CCceE
Q 017240 166 -WR-D-TVVYIDEDEP--ILI-----GRAYG-RVSRHLLHEELLRRCVESG---VSYL-SSKVESITES------TSGHR 224 (375)
Q Consensus 166 -~~-~-~~~~~~~~~~--~~~-----~~~~~-~v~~~~l~~~L~~~~~~~g---v~i~-~~~v~~i~~~------~~~~~ 224 (375)
+. - .....+.... ..+ ..+++ .+++..+.+.|.+.+.+.+ ++++ +++|++++.. ++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 11 0 1111111110 111 12333 6889999999999988764 9999 9999999742 12257
Q ss_pred EEEecCCeEEecCEEEEccCCCCcccccc--------------------cC----------------ceeee--------
Q 017240 225 LVACEHDMIVPCRLATVASGAASGKLLEY--------------------EE----------------WSYIP-------- 260 (375)
Q Consensus 225 ~V~~~~g~~i~a~~vI~A~G~~s~~~~~~--------------------~~----------------~~~~p-------- 260 (375)
+|++.+|++++||+||+|||.+|.++... .. ..++|
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~~~~ 240 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNNSTL 240 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCCEEE
Confidence 88888999999999999999999776221 00 00000
Q ss_pred --------------------------------------------------------------------------------
Q 017240 261 -------------------------------------------------------------------------------- 260 (375)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (375)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (437)
T TIGR01989 241 VWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAF 320 (437)
T ss_pred EEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecccceeE
Confidence
Q ss_pred -cCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCC---ccccccccc--------hhHH
Q 017240 261 -VGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHS---RGRLTHEQS--------NENI 326 (375)
Q Consensus 261 -~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~---~~~L~~~~~--------~~~~ 326 (375)
... ...+..++++++|||||.++|..|||++.+++|+..+++.|.+.++.+.+ ...|.. |+ ....
T Consensus 321 ~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~-Y~~~R~~~~~~v~~ 399 (437)
T TIGR01989 321 PLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKP-YERERYAKNVVLLG 399 (437)
T ss_pred EecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH-HHHHHHHHHHHHHH
Confidence 000 00234679999999999999999999999999999999999998865432 123331 11 1112
Q ss_pred HHHHHHhhCchhhHHHHHHHHHhHHHHhcCCH
Q 017240 327 SMQAWNTLWPQERKRQRAFFLFGLALILQLDI 358 (375)
Q Consensus 327 ~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~ 358 (375)
.++....++..+......+|.+++.++..+++
T Consensus 400 ~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~ 431 (437)
T TIGR01989 400 LVDKLHKLYATDFPPVVALRTFGLNLTNYIGP 431 (437)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHhhhCHH
Confidence 23444455666666777788888887777765
No 23
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.91 E-value=9.2e-23 Score=200.75 Aligned_cols=259 Identities=16% Similarity=0.145 Sum_probs=162.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC-C-Cc--CcHHHHHhcCC----chhhhhhcc-cceEEeCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-N-YG--VWEDEFRDLGL----EGCIEHVWR-DTVVYIDE 175 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~-~g--~~~~~l~~~g~----~~~~~~~~~-~~~~~~~~ 175 (375)
+..|||+||||||||+++|+.|++.|++|+||||....+. + .| ++...++.+.- ...+..... ....+...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 3469999999999999999999999999999998754331 1 11 22232332210 000000000 00011111
Q ss_pred CCCe----------eecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccC
Q 017240 176 DEPI----------LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 176 ~~~~----------~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G 244 (375)
.... ........+.|..|++.|.+.+++.|++++ +++|+++..+++..+.++ .+|.++.|+.||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeC
Confidence 1000 001111267899999999999999999999 999999987665333344 4566899999999999
Q ss_pred CCCcccccc----------------------------------cC-----------------ceeee-------------
Q 017240 245 AASGKLLEY----------------------------------EE-----------------WSYIP------------- 260 (375)
Q Consensus 245 ~~s~~~~~~----------------------------------~~-----------------~~~~p------------- 260 (375)
.+|.....+ .+ .+.++
T Consensus 162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~~~~~svG~~~~~ 241 (428)
T PRK10157 162 VNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGL 241 (428)
T ss_pred CCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEcCCeEEEEEEEeh
Confidence 877432110 00 00000
Q ss_pred -----------------------------------------cCCC--C-CccCCCEEEEccCCCCCCC--CChHHHHHHH
Q 017240 261 -----------------------------------------VGGS--L-PNTEQRNLAFGAAASMVHP--ATGYSVVRSL 294 (375)
Q Consensus 261 -----------------------------------------~~~~--~-~~~~~~v~liGdaa~~~~p--~~G~Gi~~al 294 (375)
..+. . ....++++++||||+.++| .+|+||+.|+
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~ 321 (428)
T PRK10157 242 HHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAI 321 (428)
T ss_pred HHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHH
Confidence 0000 0 1125799999999999998 5999999999
Q ss_pred hhHHHHHHHHHHHHhcCC-CccccccccchhHHHHHHHHhhCchhhHHHHHHHHHhHH-HHhcCCHHHHHHHHHHhhcC
Q 017240 295 SEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLA-LILQLDIEGIRTFFRTFFRL 371 (375)
Q Consensus 295 ~~a~~~a~~i~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~gl~-~~~~~~~~~~~~~f~~~~~l 371 (375)
.+|..+|+++.++++.++ +.. ....|.+.|++.+-++.+..+.+..+-.. .+...=|+-+.+.+..+|+.
T Consensus 322 ~SG~lAAeai~~a~~~~~~s~~-------~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (428)
T PRK10157 322 AAGEAAAKTVLSAMKSDDFSKQ-------KLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTI 393 (428)
T ss_pred HHHHHHHHHHHHHHhcCCcchh-------hHHHHHHHHHHhHHHHHHHHhccHHHhcCccHHHHHHHHHHHHHHHheee
Confidence 999999999999998664 222 34578888888776666666555442110 11122244455666666653
No 24
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.91 E-value=2.4e-23 Score=199.20 Aligned_cols=203 Identities=25% Similarity=0.282 Sum_probs=136.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCc---HHHHHhcCCchhhhhhc---c--cceEEeC--
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFRDLGLEGCIEHVW---R--DTVVYID-- 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~---~~~l~~~g~~~~~~~~~---~--~~~~~~~-- 174 (375)
+||+||||||+|+++|+.|++.|++|+|||+...... ..++. ...++.+|+...+.... . ....+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 7999999999999999999999999999998765431 22222 25677777765443322 1 1111111
Q ss_pred --------CCCCee----ecCCc-eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe--c-CC--eEEe
Q 017240 175 --------EDEPIL----IGRAY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--E-HD--MIVP 235 (375)
Q Consensus 175 --------~~~~~~----~~~~~-~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~--~-~g--~~i~ 235 (375)
...... ...+. ..+++..+.+.|.+.+++.|++++ +++++++..+++ .+.+.+ . +| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD-GVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT-EEEEEEEETCTCEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc-ccccccccccCCceeEEE
Confidence 000011 11222 368899999999999999999999 999999988877 333333 2 33 3799
Q ss_pred cCEEEEccCCCCcccccc----------------------------cC-----------ceeeecC--------------
Q 017240 236 CRLATVASGAASGKLLEY----------------------------EE-----------WSYIPVG-------------- 262 (375)
Q Consensus 236 a~~vI~A~G~~s~~~~~~----------------------------~~-----------~~~~p~~-------------- 262 (375)
||+||+|||.+|.++..+ .. ..++|..
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 240 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFD 240 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETT
T ss_pred EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeecc
Confidence 999999999999765221 00 0011100
Q ss_pred -------------------------------------------CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHH
Q 017240 263 -------------------------------------------GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPN 299 (375)
Q Consensus 263 -------------------------------------------~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~ 299 (375)
...++..+++++||||||.++|..|+|++.||.+|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~ 320 (356)
T PF01494_consen 241 ESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAA 320 (356)
T ss_dssp TTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHH
Confidence 0012446799999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 017240 300 YASAIAYILKHD 311 (375)
Q Consensus 300 ~a~~i~~~l~~~ 311 (375)
+++.|...+++.
T Consensus 321 La~~L~~~~~g~ 332 (356)
T PF01494_consen 321 LAELLAAALKGE 332 (356)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC
Confidence 999999988754
No 25
>PRK06834 hypothetical protein; Provisional
Probab=99.90 E-value=3.7e-22 Score=199.23 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=148.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC----CCCcCcH---HHHHhcCCchhhhhh---cccc---eEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT----NNYGVWE---DEFRDLGLEGCIEHV---WRDT---VVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~----~~~g~~~---~~l~~~g~~~~~~~~---~~~~---~~~~ 173 (375)
.+||+||||||+|+++|+.|++.|++|+|||+..... ...+++. +.++.+|+.+.+... +... ...+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4899999999999999999999999999999876421 2334544 456667765543321 1000 1111
Q ss_pred CCCCCeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc
Q 017240 174 DEDEPILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 174 ~~~~~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
+... .....+++ .+.+..+.+.|.+.+++.|++++ +++|+++..+++ .+.|++.+|.++++|+||+|+|.+|.++.
T Consensus 83 ~~~~-~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-~v~v~~~~g~~i~a~~vVgADG~~S~vR~ 160 (488)
T PRK06834 83 DISD-FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT-GVDVELSDGRTLRAQYLVGCDGGRSLVRK 160 (488)
T ss_pred cccc-CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEEEEecCCCCCcHh
Confidence 1110 11112333 56778899999999999999999 999999998776 67787777878999999999999996641
Q ss_pred cc--------------------c--C-c----------eeeec----------------------------------CCC
Q 017240 252 EY--------------------E--E-W----------SYIPV----------------------------------GGS 264 (375)
Q Consensus 252 ~~--------------------~--~-~----------~~~p~----------------------------------~~~ 264 (375)
.. . . + .+.|. +..
T Consensus 161 ~lgi~~~g~~~~~~~~~~dv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 240 (488)
T PRK06834 161 AAGIDFPGWDPTTSYLIAEVEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAVYGTD 240 (488)
T ss_pred hcCCCCCCCCcceEEEEEEEEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHhhCCC
Confidence 11 0 0 0 00000 000
Q ss_pred -------------------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccc
Q 017240 265 -------------------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLT 318 (375)
Q Consensus 265 -------------------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~ 318 (375)
..+..++|+++|||||.++|..|||+|.+|+||..+++.|+..+++......|.
T Consensus 241 ~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd 313 (488)
T PRK06834 241 YGIHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLD 313 (488)
T ss_pred CccccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 014568999999999999999999999999999999999999987655445444
No 26
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.90 E-value=5.2e-22 Score=195.02 Aligned_cols=203 Identities=22% Similarity=0.266 Sum_probs=137.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-----CCCcCcH---HHHHhcCCchhhhhhccc-ce-EEeCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-----NNYGVWE---DEFRDLGLEGCIEHVWRD-TV-VYIDED 176 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-----~~~g~~~---~~l~~~g~~~~~~~~~~~-~~-~~~~~~ 176 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+... ..+.++. +.|+.+|+.+.+...... .. ...+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 5899999999999999999999999999999886432 2233433 567777875543322111 11 111111
Q ss_pred C--Cee-----e-cCCce-eecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecC-C--eEEecCEEEEc
Q 017240 177 E--PIL-----I-GRAYG-RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH-D--MIVPCRLATVA 242 (375)
Q Consensus 177 ~--~~~-----~-~~~~~-~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~-g--~~i~a~~vI~A 242 (375)
. ... . ...++ .+.+..+.+.|.+.+.+. |++++ +++|++++.+++ .+.|++.+ + .+++||+||+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD-AATVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-eeEEEEccCCcceEEeeeEEEEe
Confidence 0 000 0 11122 344457888888888774 79999 999999987766 56676653 2 46999999999
Q ss_pred cCCCCcccccc------------------------c----C-c------eeeec--------------------------
Q 017240 243 SGAASGKLLEY------------------------E----E-W------SYIPV-------------------------- 261 (375)
Q Consensus 243 ~G~~s~~~~~~------------------------~----~-~------~~~p~-------------------------- 261 (375)
||.+|.++... . + + .++|.
T Consensus 177 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (415)
T PRK07364 177 DGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAE 256 (415)
T ss_pred CCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHH
Confidence 99998664111 0 0 0 00010
Q ss_pred ---------------------------C--CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 262 ---------------------------G--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 262 ---------------------------~--~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. ...++..++++++|||||.++|..|||++.|++++..+++.+...++.
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~ 334 (415)
T PRK07364 257 FLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQR 334 (415)
T ss_pred HHHHHHHHhhhhhcCceecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhc
Confidence 0 000245679999999999999999999999999999999999887753
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.90 E-value=8e-22 Score=191.50 Aligned_cols=201 Identities=24% Similarity=0.271 Sum_probs=144.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--------CCCcCcH---HHHHhcCCchhhhh----hcccceEEe
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--------NNYGVWE---DEFRDLGLEGCIEH----VWRDTVVYI 173 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--------~~~g~~~---~~l~~~g~~~~~~~----~~~~~~~~~ 173 (375)
||+||||||+|+++|+.|++.|++|+|||+..... ...+++. +.++.+|+.+.+.. .+.....+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999986432 2234443 56777887554432 111112222
Q ss_pred CCCCC-eee------cCCce-eecHHHHHHHHHHHHHHCC-ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEcc
Q 017240 174 DEDEP-ILI------GRAYG-RVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (375)
Q Consensus 174 ~~~~~-~~~------~~~~~-~v~~~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~ 243 (375)
..... ..+ ...++ .+++..+.+.|.+.+.+.| ++++ +++|+++..+++ .+.|++.+|+++.+|+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~~~~vi~ad 159 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HVELTLDDGQQLRARLLVGAD 159 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-eeEEEECCCCEEEeeEEEEeC
Confidence 21111 111 11222 6889999999999998887 9999 999999987766 677888888889999999999
Q ss_pred CCCCcccccc-----------------------c-C-----------ceeee----------------------------
Q 017240 244 GAASGKLLEY-----------------------E-E-----------WSYIP---------------------------- 260 (375)
Q Consensus 244 G~~s~~~~~~-----------------------~-~-----------~~~~p---------------------------- 260 (375)
|.+|..+..+ . . ..++|
T Consensus 160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (385)
T TIGR01988 160 GANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEF 239 (385)
T ss_pred CCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHH
Confidence 9998654111 0 0 00011
Q ss_pred -------------------------cCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 261 -------------------------VGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 261 -------------------------~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
... ..++..++++++|||+|.++|.+|+|++.|+++|..+++.|...+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~ 316 (385)
T TIGR01988 240 LAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRR 316 (385)
T ss_pred HHHHHHHHhhhcCceEeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhc
Confidence 000 00234578999999999999999999999999999999999988754
No 28
>PRK09126 hypothetical protein; Provisional
Probab=99.90 E-value=4e-22 Score=194.37 Aligned_cols=203 Identities=23% Similarity=0.278 Sum_probs=141.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--------CCCcCcH---HHHHhcCCchhhhhh----cccceE
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--------NNYGVWE---DEFRDLGLEGCIEHV----WRDTVV 171 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--------~~~g~~~---~~l~~~g~~~~~~~~----~~~~~~ 171 (375)
++||+||||||+|+++|+.|++.|++|+|+|+..... ...+++. ..|+.+|+.+.+... .....+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 4899999999999999999999999999999876421 1112322 567777875443211 111111
Q ss_pred EeCCCC-Ceee------cCCce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEE
Q 017240 172 YIDEDE-PILI------GRAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (375)
Q Consensus 172 ~~~~~~-~~~~------~~~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~ 241 (375)
+..... ...+ ...++ .+++..+.+.|.+.+.+ .|++++ +++|++++.+++ .+.|++.+|.++.+|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GAQVTLANGRRLTARLLVA 161 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eEEEEEcCCCEEEeCEEEE
Confidence 111100 0111 11233 46788888888888754 689999 999999987766 5778888888999999999
Q ss_pred ccCCCCcccccc---------------------------------cC--ceeeecC------------------------
Q 017240 242 ASGAASGKLLEY---------------------------------EE--WSYIPVG------------------------ 262 (375)
Q Consensus 242 A~G~~s~~~~~~---------------------------------~~--~~~~p~~------------------------ 262 (375)
|||.+|..+..+ .. ..++|..
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (392)
T PRK09126 162 ADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPE 241 (392)
T ss_pred eCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHH
Confidence 999988654211 00 0011100
Q ss_pred --------------------C-----C------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 263 --------------------G-----S------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 263 --------------------~-----~------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. + .++..++++++|||+|.++|..|+|++.|+.+|..+++.+...++.
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~ 320 (392)
T PRK09126 242 AFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARR 320 (392)
T ss_pred HHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhc
Confidence 0 0 0134579999999999999999999999999999999999988754
No 29
>PRK06996 hypothetical protein; Provisional
Probab=99.90 E-value=1.2e-21 Score=191.42 Aligned_cols=255 Identities=20% Similarity=0.220 Sum_probs=162.7
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHCC----CcEEEECCCCCCC---C--CCcCcH---HHHHhcCCchhhhhhcccc--
Q 017240 104 GNGILDLVVIGCGPAGLALAAESAKLG----LNVGLIGPDLPFT---N--NYGVWE---DEFRDLGLEGCIEHVWRDT-- 169 (375)
Q Consensus 104 ~~~~~DVvIIGgG~aGl~aA~~La~~G----~~V~liE~~~~~~---~--~~g~~~---~~l~~~g~~~~~~~~~~~~-- 169 (375)
.+..+||+||||||+|+++|+.|++.| ++|+|||+..... . ...++. +.++.+|+...........
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 345689999999999999999999987 4799999875321 1 222222 4567777643311111111
Q ss_pred -------eEEeCCCCCeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC---eEEecC
Q 017240 170 -------VVYIDEDEPILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCR 237 (375)
Q Consensus 170 -------~~~~~~~~~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g---~~i~a~ 237 (375)
...+..... ..+..+ .+++..+.+.|.+.+.+.|++++ +++++++..+++ .+.+++.++ ++++||
T Consensus 88 ~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~-~v~v~~~~~~g~~~i~a~ 164 (398)
T PRK06996 88 SQRGHFGRTLIDRDDH--DVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDAD-GVTLALGTPQGARTLRAR 164 (398)
T ss_pred ecCCCCceEEeccccc--CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCC-eEEEEECCCCcceEEeee
Confidence 111111100 012234 68899999999999999999999 999999977766 577777654 689999
Q ss_pred EEEEccCCC-Cccccc---------c----------------------------------c--C---cee---ee-----
Q 017240 238 LATVASGAA-SGKLLE---------Y----------------------------------E--E---WSY---IP----- 260 (375)
Q Consensus 238 ~vI~A~G~~-s~~~~~---------~----------------------------------~--~---~~~---~p----- 260 (375)
+||+|||.. |..+.. + . . +.+ .+
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~ 244 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAA 244 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHH
Confidence 999999963 432211 0 0 0 000 00
Q ss_pred -----------------------------------cCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHH
Q 017240 261 -----------------------------------VGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASA 303 (375)
Q Consensus 261 -----------------------------------~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~ 303 (375)
... ...+..++++++|||||.++|..|||++.+++|+..+++.
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~ 324 (398)
T PRK06996 245 RRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADA 324 (398)
T ss_pred HHHcCCHHHHHHHHHHHhccccCceEEecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHH
Confidence 000 0024567999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccccccch--------hHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHH
Q 017240 304 IAYILKHDHSRGRLTHEQSN--------ENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 367 (375)
Q Consensus 304 i~~~l~~~~~~~~L~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~ 367 (375)
|.. .+.....|.. |+. .........+.+..+......+|.+++.++..+++ +++++.+
T Consensus 325 L~~---~~~~~~~L~~-Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~--~k~~~~~ 390 (398)
T PRK06996 325 LSD---HGATPLALAT-FAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPP--LKHALAR 390 (398)
T ss_pred HHh---cCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHH--HHHHHHH
Confidence 964 2222233331 110 11112222333444555677788888888888776 5565544
No 30
>PRK07045 putative monooxygenase; Reviewed
Probab=99.90 E-value=2.7e-22 Score=195.33 Aligned_cols=206 Identities=21% Similarity=0.226 Sum_probs=142.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcH---HHHHhcCCchhhhhhc---ccceEEeCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFRDLGLEGCIEHVW---RDTVVYIDE 175 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~---~~l~~~g~~~~~~~~~---~~~~~~~~~ 175 (375)
+..+||+||||||+|+++|+.|++.|++|+|+|+.+.... ...++. +.|+.+|+.+.+.... .........
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 4568999999999999999999999999999998865421 111222 5677777755433211 111111111
Q ss_pred CCC-ee--e----cCCc-eeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCc-eEEEEecCCeEEecCEEEEccC
Q 017240 176 DEP-IL--I----GRAY-GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 176 ~~~-~~--~----~~~~-~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~-~~~V~~~~g~~i~a~~vI~A~G 244 (375)
... .. + ...+ ..+++..+.+.|.+.+.+ .|++++ +++|+++..++++ .+.|++.+|+++.+|+||+|||
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCC
Confidence 111 00 0 0111 247888999999998865 689999 9999999887664 3568888888999999999999
Q ss_pred CCCccccc----------c--------------------------cCc-eeee---------------------------
Q 017240 245 AASGKLLE----------Y--------------------------EEW-SYIP--------------------------- 260 (375)
Q Consensus 245 ~~s~~~~~----------~--------------------------~~~-~~~p--------------------------- 260 (375)
.+|.++.. + ..+ ..+|
T Consensus 163 ~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
T PRK07045 163 ARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRT 242 (388)
T ss_pred CChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHH
Confidence 99855421 0 000 0000
Q ss_pred -------------------------------cCC-C-CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHH
Q 017240 261 -------------------------------VGG-S-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYI 307 (375)
Q Consensus 261 -------------------------------~~~-~-~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~ 307 (375)
+.. . .++..++++++|||+|.++|..|+|++.|+.|+..+++.|...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 322 (388)
T PRK07045 243 KLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLH 322 (388)
T ss_pred HHHHHHhhhcCccchHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhh
Confidence 000 0 0234679999999999999999999999999999999999887
Q ss_pred Hhc
Q 017240 308 LKH 310 (375)
Q Consensus 308 l~~ 310 (375)
+.+
T Consensus 323 ~~~ 325 (388)
T PRK07045 323 LSG 325 (388)
T ss_pred cCC
Confidence 654
No 31
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.90 E-value=5.6e-22 Score=200.88 Aligned_cols=212 Identities=19% Similarity=0.164 Sum_probs=146.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDED 176 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~ 176 (375)
..+||+||||||+|+++|+.|++.|++|+|||+..... ...+++. +.++.+|+.+.+... +....++....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 35899999999999999999999999999999986432 3344443 456677775543321 11111111111
Q ss_pred CCe---------eecCCc-eeecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEec--CC--eEEecCEEE
Q 017240 177 EPI---------LIGRAY-GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACE--HD--MIVPCRLAT 240 (375)
Q Consensus 177 ~~~---------~~~~~~-~~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~--~g--~~i~a~~vI 240 (375)
... ..+.+. ..+++..+.+.|.+.+.+. |++++ +++|++++.+++ .++|++. +| .++++|+||
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~-~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD-GVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC-eEEEEEEcCCCCEEEEEEEEEE
Confidence 110 011111 2467888999999988774 89999 999999998877 5666664 45 579999999
Q ss_pred EccCCCCcccccc----------------------------------------------cCc--eeee------------
Q 017240 241 VASGAASGKLLEY----------------------------------------------EEW--SYIP------------ 260 (375)
Q Consensus 241 ~A~G~~s~~~~~~----------------------------------------------~~~--~~~p------------ 260 (375)
+|||.+|.++..+ ... +.+.
T Consensus 168 gADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~ 247 (538)
T PRK06183 168 GCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQLAS 247 (538)
T ss_pred ecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhcCC
Confidence 9999999765211 000 0000
Q ss_pred ----------c--C-C----------------CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 261 ----------V--G-G----------------SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 261 ----------~--~-~----------------~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
. . . ...+..++|+++|||||.++|..|||++.+++||..+++.|...+++.
T Consensus 248 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~ 327 (538)
T PRK06183 248 PENVWRLLAPWGPTPDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR 327 (538)
T ss_pred HHHHHHHHHhhCCCCcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC
Confidence 0 0 0 002446799999999999999999999999999999999999887655
Q ss_pred CCccccc
Q 017240 312 HSRGRLT 318 (375)
Q Consensus 312 ~~~~~L~ 318 (375)
.....|.
T Consensus 328 ~~~~~L~ 334 (538)
T PRK06183 328 AGDALLD 334 (538)
T ss_pred CcHHHHH
Confidence 4444443
No 32
>PRK07190 hypothetical protein; Provisional
Probab=99.90 E-value=3.6e-22 Score=199.13 Aligned_cols=212 Identities=19% Similarity=0.211 Sum_probs=145.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhh---------hcccc
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEH---------VWRDT 169 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~---------~~~~~ 169 (375)
+..+||+||||||+|+++|+.|++.|++|+|||+..... ...++.. +.++.+|+.+.+.. .|...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 446899999999999999999999999999999886432 2233333 34555665332211 11111
Q ss_pred eE-EeCCC--CCe--eecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEcc
Q 017240 170 VV-YIDED--EPI--LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (375)
Q Consensus 170 ~~-~~~~~--~~~--~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~ 243 (375)
.. ..... ... .....+..+.+..+.+.|.+.+.+.|++++ +++|+++..+++ .+.+.+.+|++++|++||+||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~-~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA-GCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eeEEEECCCcEEEeCEEEECC
Confidence 11 00000 000 001112356778899999999999999999 999999988777 566677778889999999999
Q ss_pred CCCCcccccc------------------------c---Cc----------eeeec-------------------------
Q 017240 244 GAASGKLLEY------------------------E---EW----------SYIPV------------------------- 261 (375)
Q Consensus 244 G~~s~~~~~~------------------------~---~~----------~~~p~------------------------- 261 (375)
|++|.++..+ . .. ..+|.
T Consensus 162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~~~~~t~~~~~~~l 241 (487)
T PRK07190 162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDTKDFTLEQAIAKI 241 (487)
T ss_pred CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcCCCCCCHHHHHHHH
Confidence 9998654111 0 00 00110
Q ss_pred ----CCC-C-------------------Ccc-CCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Q 017240 262 ----GGS-L-------------------PNT-EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGR 316 (375)
Q Consensus 262 ----~~~-~-------------------~~~-~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~ 316 (375)
... + .+. .++|+++|||||.+.|..|||+|.+++||..+++.|+..+++......
T Consensus 242 ~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~l 321 (487)
T PRK07190 242 NHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPEL 321 (487)
T ss_pred HHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHH
Confidence 000 0 133 589999999999999999999999999999999999998877654444
Q ss_pred c
Q 017240 317 L 317 (375)
Q Consensus 317 L 317 (375)
|
T Consensus 322 L 322 (487)
T PRK07190 322 L 322 (487)
T ss_pred H
Confidence 4
No 33
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.89 E-value=1.3e-21 Score=190.46 Aligned_cols=201 Identities=20% Similarity=0.251 Sum_probs=139.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---C-----CcCcH---HHHHhcCCchhhhh-hc-c--cceE
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---N-----YGVWE---DEFRDLGLEGCIEH-VW-R--DTVV 171 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~-----~g~~~---~~l~~~g~~~~~~~-~~-~--~~~~ 171 (375)
.+||+||||||+|+++|+.|++.|++|+|||+...... . .++.. +.++.+|+.+.+.. .+ . ...+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 48999999999999999999999999999998865421 1 12222 56677777554321 11 1 1111
Q ss_pred EeCCCCCeee-------cCCceeecHHHHHHHHHHHHHHCC-ceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEcc
Q 017240 172 YIDEDEPILI-------GRAYGRVSRHLLHEELLRRCVESG-VSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (375)
Q Consensus 172 ~~~~~~~~~~-------~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~ 243 (375)
+-+....... ......+++..+.+.|.+.+.+.| ++++++.|+++..+++ .+.|++.+|.+++||+||+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~vI~ad 163 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPD-AATLTLADGQVLRADLVVGAD 163 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCC-eEEEEECCCCEEEeeEEEEeC
Confidence 1111111110 111236889999999999998887 8888778999877666 577888888789999999999
Q ss_pred CCCCcccccc----------------------c----C---------ceeeec---------------------------
Q 017240 244 GAASGKLLEY----------------------E----E---------WSYIPV--------------------------- 261 (375)
Q Consensus 244 G~~s~~~~~~----------------------~----~---------~~~~p~--------------------------- 261 (375)
|.+|..+... . . ..++|.
T Consensus 164 G~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
T PRK07608 164 GAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALSPEAL 243 (388)
T ss_pred CCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHH
Confidence 9988653110 0 0 000110
Q ss_pred --------------------------C-C-CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHH
Q 017240 262 --------------------------G-G-SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 262 --------------------------~-~-~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
. . ...+..++++++||++|.++|.+|||++.+++++..+++.|....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~ 318 (388)
T PRK07608 244 AARVERASGGRLGRLECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGRE 318 (388)
T ss_pred HHHHHHHHHHhcCCceecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhh
Confidence 0 0 001346789999999999999999999999999999999998764
No 34
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.89 E-value=1.2e-21 Score=190.31 Aligned_cols=199 Identities=21% Similarity=0.276 Sum_probs=141.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEECCCCCCCC-------CCcCcH---HHHHhcCCchhhhhhcc--cceEEeCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTN-------NYGVWE---DEFRDLGLEGCIEHVWR--DTVVYIDE 175 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~~~~~-------~~g~~~---~~l~~~g~~~~~~~~~~--~~~~~~~~ 175 (375)
||+||||||+|+++|+.|++.| ++|+|+|+...... ..+++. +.++.+|+.+.+..... ......+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999998754321 123332 56778888655432211 11111111
Q ss_pred C--CCee-----ec-CCce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccC
Q 017240 176 D--EPIL-----IG-RAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 176 ~--~~~~-----~~-~~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G 244 (375)
. .... .. ...+ .+++..+.+.|.+.+.+ .|++++ +++|+++..+++ .++|++.+|.++.||+||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD-YVRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC-eEEEEECCCCEEEeeEEEEecC
Confidence 1 0111 11 1122 58899999999999988 599999 999999987766 5778888888899999999999
Q ss_pred CCCcccccc--------------------------------------------cC--ce---eee---------------
Q 017240 245 AASGKLLEY--------------------------------------------EE--WS---YIP--------------- 260 (375)
Q Consensus 245 ~~s~~~~~~--------------------------------------------~~--~~---~~p--------------- 260 (375)
.+|..+..+ .. .. ..|
T Consensus 160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T TIGR01984 160 ANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEF 239 (382)
T ss_pred CChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHH
Confidence 988643110 00 00 000
Q ss_pred -------------------------cC--CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHH
Q 017240 261 -------------------------VG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 261 -------------------------~~--~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.. ....+..++++++|||+|.++|.+|+|++.++.++..+++.|...+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 314 (382)
T TIGR01984 240 LAELQQAFGWRLGKITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR 314 (382)
T ss_pred HHHHHHHHhhhccCeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence 00 0001345799999999999999999999999999999999998765
No 35
>PRK08244 hypothetical protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=195.61 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=144.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhhc---ccceEEeCCC-
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHVW---RDTVVYIDED- 176 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~~---~~~~~~~~~~- 176 (375)
++||+||||||+|+++|+.|++.|++|+|||+.+... ...+++. +.++.+|+.+.+.... ..........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 3899999999999999999999999999999876432 2333433 5567777755433211 1111110000
Q ss_pred C---CeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec--CC-eEEecCEEEEccCCCCc
Q 017240 177 E---PILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HD-MIVPCRLATVASGAASG 248 (375)
Q Consensus 177 ~---~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~--~g-~~i~a~~vI~A~G~~s~ 248 (375)
. ......++. .+++..+.+.|.+.+++.|++++ +++++++..+++ .+.|++. +| .++++|+||+|||.+|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD-GVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC-eEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 0 001112333 57888999999999998999999 999999987766 4555543 45 57999999999999985
Q ss_pred ccccc---------------------------------c-C-ceeeec--------------------------------
Q 017240 249 KLLEY---------------------------------E-E-WSYIPV-------------------------------- 261 (375)
Q Consensus 249 ~~~~~---------------------------------~-~-~~~~p~-------------------------------- 261 (375)
++... . . ..++|.
T Consensus 161 vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (493)
T PRK08244 161 VRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSL 240 (493)
T ss_pred HHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHH
Confidence 53110 0 0 000110
Q ss_pred ----CCC-------------------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccc
Q 017240 262 ----GGS-------------------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLT 318 (375)
Q Consensus 262 ----~~~-------------------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~ 318 (375)
+.. ..+..++|+++|||||.++|..|||+|.+|+|+..+++.|+..+++......|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~ 320 (493)
T PRK08244 241 IRICGTDFGLNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLD 320 (493)
T ss_pred HHhhCCCCCcCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhh
Confidence 000 013356999999999999999999999999999999999999886544444443
No 36
>PRK11445 putative oxidoreductase; Provisional
Probab=99.89 E-value=1.4e-21 Score=187.76 Aligned_cols=212 Identities=20% Similarity=0.152 Sum_probs=141.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCcCcH---HHHHhcCCchhhhhhccc---ceEEeC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-------NNYGVWE---DEFRDLGLEGCIEHVWRD---TVVYID 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-------~~~g~~~---~~l~~~g~~~~~~~~~~~---~~~~~~ 174 (375)
|||+||||||||+++|+.|++. ++|+|||+.+... +...++. +.++.+|+.......... .....+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 9999999876321 2222343 456667764211100000 001111
Q ss_pred CCC--CeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe-cCCe--EEecCEEEEccCCCCc
Q 017240 175 EDE--PILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-EHDM--IVPCRLATVASGAASG 248 (375)
Q Consensus 175 ~~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~-~~g~--~i~a~~vI~A~G~~s~ 248 (375)
... ....+.++..++|..|.+.|.+. .+.|++++ ++.|+.+..+++ .+.|++ .+|. +++||+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDD-GYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCC-EEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 111 11123344579999999999885 46789999 999999987766 566664 4563 6899999999999886
Q ss_pred ccccc--------------------c-C-c-------------eeeecC-------------------------------
Q 017240 249 KLLEY--------------------E-E-W-------------SYIPVG------------------------------- 262 (375)
Q Consensus 249 ~~~~~--------------------~-~-~-------------~~~p~~------------------------------- 262 (375)
.+..+ . . . |.+|.+
T Consensus 159 vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~ 238 (351)
T PRK11445 159 VRRHLYPDHQIRKYVAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGYFIFGGAYPMKDGRERFETLKEKLSAFGFQ 238 (351)
T ss_pred HhHHhcCCCchhhEEEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCcEEecccccccchHHHHHHHHHHHHhcccc
Confidence 53110 0 0 0 111100
Q ss_pred --CCC---------C-------ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCccccccccchh
Q 017240 263 --GSL---------P-------NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNE 324 (375)
Q Consensus 263 --~~~---------~-------~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L~~~~~~~ 324 (375)
... + ...+++++|||||+.++|.+|+|++.|+.++..++++|.+..++ ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~~~------------~~ 306 (351)
T PRK11445 239 FGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQPEK------------LN 306 (351)
T ss_pred cccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcccc------------hH
Confidence 000 0 11267999999999999999999999999999999999765522 34
Q ss_pred HHHHHHHHhh
Q 017240 325 NISMQAWNTL 334 (375)
Q Consensus 325 ~~~~~~w~~~ 334 (375)
+.|++.|+.+
T Consensus 307 ~~y~~~~~~~ 316 (351)
T PRK11445 307 TAYWRKTRKL 316 (351)
T ss_pred HHHHHHHHHH
Confidence 5777777543
No 37
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.89 E-value=3.2e-21 Score=188.06 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=137.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-----CCCcCcH---HHHHhcCCchhhhhhc---ccceEEeCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-----NNYGVWE---DEFRDLGLEGCIEHVW---RDTVVYIDE 175 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-----~~~g~~~---~~l~~~g~~~~~~~~~---~~~~~~~~~ 175 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+... ....++. +.++.+|+.+.+.... ....++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 3799999999999999999999999999999886421 1111222 5677788765543211 11112111
Q ss_pred CCCeee-------cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEE-cCCceEEEEe-cCC--eEEecCEEEEcc
Q 017240 176 DEPILI-------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITE-STSGHRLVAC-EHD--MIVPCRLATVAS 243 (375)
Q Consensus 176 ~~~~~~-------~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~-~~~~~~~V~~-~~g--~~i~a~~vI~A~ 243 (375)
...... +.....+++..+.+.|.+.+.+.|++++ +++++++.. +++ .+.|++ .+| .++++|+||+||
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~-~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD-RPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC-ceEEEEEcCCeEEEEEeCEEEECC
Confidence 111111 1111245677888888888888899999 999999876 444 455665 356 378999999999
Q ss_pred CCCCcccccc---------------------------cCc---------------------eee--e-------------
Q 017240 244 GAASGKLLEY---------------------------EEW---------------------SYI--P------------- 260 (375)
Q Consensus 244 G~~s~~~~~~---------------------------~~~---------------------~~~--p------------- 260 (375)
|.+|.++..+ .+. .++ +
T Consensus 160 G~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (392)
T PRK08243 160 GFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERF 239 (392)
T ss_pred CCCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCChhHH
Confidence 9998765211 000 000 0
Q ss_pred -------cC---------CC--------C------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 261 -------VG---------GS--------L------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 261 -------~~---------~~--------~------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
+. .. + ++..++++++|||||.++|.+|||++.+|.|+..+++.|.+.+++
T Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~ 319 (392)
T PRK08243 240 WDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE 319 (392)
T ss_pred HHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc
Confidence 00 00 0 122468999999999999999999999999999999999988764
Q ss_pred C
Q 017240 311 D 311 (375)
Q Consensus 311 ~ 311 (375)
+
T Consensus 320 ~ 320 (392)
T PRK08243 320 G 320 (392)
T ss_pred C
Confidence 3
No 38
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.89 E-value=1.4e-21 Score=182.53 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=133.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcHHHHHhcCCchhh-hhhcccceEEeCCCCCeee--
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWEDEFRDLGLEGCI-EHVWRDTVVYIDEDEPILI-- 181 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-- 181 (375)
|||+||||||+|+++|+.|++.|++|+|||+..... +..+++...++.++..... ...+.....+.........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 699999999999999999999999999999886432 2333444445544433211 1111111122111111111
Q ss_pred -cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC-CeEEecCEEEEccCCCCcccccc-----
Q 017240 182 -GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASGKLLEY----- 253 (375)
Q Consensus 182 -~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~-g~~i~a~~vI~A~G~~s~~~~~~----- 253 (375)
...+..+++..+.+.|.+.+.+.|++++ +++|+++..+++ .+.+.+.+ +.++++|+||+|+|.+|.....+
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~ 159 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKE 159 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCC
Confidence 1223368999999999999999999998 999999987766 45555443 46899999999999887443110
Q ss_pred ---------------------------cC-------c-eeee--------------------------------------
Q 017240 254 ---------------------------EE-------W-SYIP-------------------------------------- 260 (375)
Q Consensus 254 ---------------------------~~-------~-~~~p-------------------------------------- 260 (375)
.. + +.+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (295)
T TIGR02032 160 PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEEGEDLKKYLKDFLARRPELKDA 239 (295)
T ss_pred CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCCCCCHHHHHHHHHHhCcccccC
Confidence 00 0 0111
Q ss_pred -----------cCCC-CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHH
Q 017240 261 -----------VGGS-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAI 304 (375)
Q Consensus 261 -----------~~~~-~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i 304 (375)
.... .+...++++++|||+|.++|.+|+|++.|+.+|..+|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 240 ETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 0000 1234679999999999999999999999999999998864
No 39
>PRK07588 hypothetical protein; Provisional
Probab=99.89 E-value=2.1e-21 Score=189.22 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=138.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDEDEP 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~~~ 178 (375)
.||+||||||+|+++|+.|++.|++|+|||+.+... ..+.+|. +.++.+|+.+.+... +....++......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 389999999999999999999999999999886542 1222332 567777875443321 1111111111111
Q ss_pred ----------eeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 179 ----------ILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 179 ----------~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
...+.++..+++..|.+.|.+.+. .|++++ +++|++++.+++ .+.|++.+|+++.+|+||+|||.+|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRD-GVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCC-eEEEEECCCCEEEeCEEEECCCCCc
Confidence 011223346889999999988654 479999 999999988776 6778888998899999999999998
Q ss_pred cccccc------------------------------------cCc--eeeec----------------------------
Q 017240 248 GKLLEY------------------------------------EEW--SYIPV---------------------------- 261 (375)
Q Consensus 248 ~~~~~~------------------------------------~~~--~~~p~---------------------------- 261 (375)
.++... .+. ..+|.
T Consensus 159 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T PRK07588 159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQL 238 (391)
T ss_pred cchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHH
Confidence 765210 000 00000
Q ss_pred -----C---C-----------------------CC-CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 262 -----G---G-----------------------SL-PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 262 -----~---~-----------------------~~-~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
. . .. .+..++++++|||||.++|..|||++.|++|+..+++.|..
T Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 315 (391)
T PRK07588 239 LRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR 315 (391)
T ss_pred HHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence 0 0 00 12356899999999999999999999999999999999864
No 40
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.89 E-value=3e-21 Score=188.25 Aligned_cols=204 Identities=22% Similarity=0.290 Sum_probs=140.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHC---CCcEEEECCCCCCC--------CCCcCcH---HHHHhcCCchhhhhhcc-cceE
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFT--------NNYGVWE---DEFRDLGLEGCIEHVWR-DTVV 171 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~---G~~V~liE~~~~~~--------~~~g~~~---~~l~~~g~~~~~~~~~~-~~~~ 171 (375)
.+||+||||||+|+++|+.|++. |++|+|||+..+.. ...+++. +.++.+|+.+.+..... ....
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 48999999999999999999998 99999999953221 1223333 55677777554432111 0011
Q ss_pred -EeCCCCC--e-----eecC-Cce-eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEE
Q 017240 172 -YIDEDEP--I-----LIGR-AYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLA 239 (375)
Q Consensus 172 -~~~~~~~--~-----~~~~-~~~-~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~v 239 (375)
..+.... . ..+. ..+ .+++..+.+.|.+.+.+ .|++++ +++|+++..+++ .+.|++.+|.++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-SVRVTLDDGETLTGRLL 161 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEE
Confidence 1111000 0 0111 112 57888899999998876 589999 999999987666 57788888878999999
Q ss_pred EEccCCCCcccccc--------------------c--------------C-ceeeec-----------------------
Q 017240 240 TVASGAASGKLLEY--------------------E--------------E-WSYIPV----------------------- 261 (375)
Q Consensus 240 I~A~G~~s~~~~~~--------------------~--------------~-~~~~p~----------------------- 261 (375)
|+|+|.+|..+..+ . + ...+|.
T Consensus 162 I~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~ 241 (395)
T PRK05732 162 VAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWS 241 (395)
T ss_pred EEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 99999988654110 0 0 000000
Q ss_pred --------------------------------CCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 262 --------------------------------GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 262 --------------------------------~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
....++..++++++|||+|.++|.+|+|++.++.+|..+++.|...++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~ 321 (395)
T PRK05732 242 DAQFLAELQQAFGWRLGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALA 321 (395)
T ss_pred HHHHHHHHHHHHHhhhcceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHh
Confidence 000023467999999999999999999999999999999999998876
Q ss_pred cC
Q 017240 310 HD 311 (375)
Q Consensus 310 ~~ 311 (375)
.+
T Consensus 322 ~~ 323 (395)
T PRK05732 322 RG 323 (395)
T ss_pred cC
Confidence 43
No 41
>PRK06184 hypothetical protein; Provisional
Probab=99.88 E-value=2.3e-21 Score=194.97 Aligned_cols=209 Identities=22% Similarity=0.235 Sum_probs=144.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDEDE 177 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~~ 177 (375)
.+||+||||||+|+++|+.|++.|++|+|||+.+... ...+++. +.++.+|+.+.+... +.....+.....
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 4899999999999999999999999999999875432 3344443 566777775443221 111111111110
Q ss_pred C----------eeecC--Cc-eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe---cCCeEEecCEEE
Q 017240 178 P----------ILIGR--AY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHDMIVPCRLAT 240 (375)
Q Consensus 178 ~----------~~~~~--~~-~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~---~~g~~i~a~~vI 240 (375)
. ..... +. ..+++..+.+.|.+.+.+.|++++ +++|++++.+++ .+.+++ .++++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD-GVTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC-cEEEEEEeCCCeEEEEeCEEE
Confidence 0 00011 11 257788899999999999999999 999999988776 456655 455789999999
Q ss_pred EccCCCCcccccc----------------------------------cC-c--eeeec----------------------
Q 017240 241 VASGAASGKLLEY----------------------------------EE-W--SYIPV---------------------- 261 (375)
Q Consensus 241 ~A~G~~s~~~~~~----------------------------------~~-~--~~~p~---------------------- 261 (375)
+|||++|.++..+ .. . ..+|.
T Consensus 162 gADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 241 (502)
T PRK06184 162 GADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEPDLSA 241 (502)
T ss_pred ECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccCCCCH
Confidence 9999998654111 00 0 00010
Q ss_pred -----------C-C-----C--------------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 262 -----------G-G-----S--------------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 262 -----------~-~-----~--------------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
+ . . ..+..++|+++|||||.++|..|||++.+|+||..+++.|+..+++
T Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g 321 (502)
T PRK06184 242 DGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG 321 (502)
T ss_pred HHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC
Confidence 0 0 0 0134679999999999999999999999999999999999988876
Q ss_pred CCCcccc
Q 017240 311 DHSRGRL 317 (375)
Q Consensus 311 ~~~~~~L 317 (375)
.....|
T Consensus 322 -~~~~lL 327 (502)
T PRK06184 322 -APEALL 327 (502)
T ss_pred -CCHHHH
Confidence 433333
No 42
>PRK07538 hypothetical protein; Provisional
Probab=99.87 E-value=5.5e-21 Score=187.66 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=94.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCcC--c---HHHHHhcCCchhhhhhcc--cceEEeCC-CCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGV--W---EDEFRDLGLEGCIEHVWR--DTVVYIDE-DEP 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~--~---~~~l~~~g~~~~~~~~~~--~~~~~~~~-~~~ 178 (375)
+||+||||||+|+++|+.|++.|++|+|||+..... ...|+ + .+.|+.+|+.+.+..... ....+.+. ...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999876432 12222 2 255667887554332211 11111111 110
Q ss_pred e---------eecCCceeecHHHHHHHHHHHHHH-CC-ceEE-EEEEEEEEEcCCceEEEEecCC-----eEEecCEEEE
Q 017240 179 I---------LIGRAYGRVSRHLLHEELLRRCVE-SG-VSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATV 241 (375)
Q Consensus 179 ~---------~~~~~~~~v~~~~l~~~L~~~~~~-~g-v~i~-~~~v~~i~~~~~~~~~V~~~~g-----~~i~a~~vI~ 241 (375)
. .+..+...+++..|.+.|.+.+.+ .| .+++ +++|+++..++++ +.+.+.++ ++++||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEE
Confidence 0 011122258999999999999866 46 4688 9999999877663 44444332 4899999999
Q ss_pred ccCCCCcc
Q 017240 242 ASGAASGK 249 (375)
Q Consensus 242 A~G~~s~~ 249 (375)
|||.+|.+
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99998855
No 43
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.87 E-value=2.7e-20 Score=181.28 Aligned_cols=202 Identities=15% Similarity=0.186 Sum_probs=132.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--C---CCcCc---HHHHHhcCCchhhhhhc-c-cceEEeCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--N---NYGVW---EDEFRDLGLEGCIEHVW-R-DTVVYIDEDE 177 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~---~~g~~---~~~l~~~g~~~~~~~~~-~-~~~~~~~~~~ 177 (375)
+||+||||||+|+++|+.|++.|++|+|||+.+... . ...++ .+.|+.+|+.+.+.... . ....+.....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 799999999999999999999999999999886421 1 11122 25677888765543211 1 1111111111
Q ss_pred Cee--ec-----CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-CCe--EEecCEEEEccCCC
Q 017240 178 PIL--IG-----RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HDM--IVPCRLATVASGAA 246 (375)
Q Consensus 178 ~~~--~~-----~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g~--~i~a~~vI~A~G~~ 246 (375)
... +. .+.....+..+...|.+.+.+.|+.++ +.+++.+...++..+.|++. +|+ ++++|+||+|||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~ 162 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFH 162 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCc
Confidence 000 00 111123466788889888888898888 87777775422224566664 664 68999999999999
Q ss_pred Ccccccc--------------------c--------------------------C--ceeeec-----------------
Q 017240 247 SGKLLEY--------------------E--------------------------E--WSYIPV----------------- 261 (375)
Q Consensus 247 s~~~~~~--------------------~--------------------------~--~~~~p~----------------- 261 (375)
|.++..+ . + .+++..
T Consensus 163 S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (390)
T TIGR02360 163 GVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAE 242 (390)
T ss_pred hhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHH
Confidence 8664211 0 0 000000
Q ss_pred -----C---------C--------CC------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 262 -----G---------G--------SL------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 262 -----~---------~--------~~------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
. . ++ ++..++++++|||||.++|..|||++.|++|+..+++.|.....
T Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~ 318 (390)
T TIGR02360 243 LKRRLPSEAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ 318 (390)
T ss_pred HHHhcCchhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc
Confidence 0 0 00 12367899999999999999999999999999999999976543
No 44
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.86 E-value=3.5e-20 Score=188.26 Aligned_cols=212 Identities=21% Similarity=0.239 Sum_probs=145.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDED 176 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~ 176 (375)
..+||+||||||+|+++|+.|++.|++|+|||+..... ...+++. +.++.+|+.+.+... +.....+....
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 45899999999999999999999999999999986432 2334443 556677875543221 11112222211
Q ss_pred CCee--------ec-CCceeecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEe--cCC-eEEecCEEEEc
Q 017240 177 EPIL--------IG-RAYGRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVAC--EHD-MIVPCRLATVA 242 (375)
Q Consensus 177 ~~~~--------~~-~~~~~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~--~~g-~~i~a~~vI~A 242 (375)
.... .. ..+..+++..+.+.|.+.+.+. +++++ +++|+++..+++ .+.+++ .++ .++.+|+||+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~v~v~~~~~~g~~~i~ad~vVgA 180 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD-GVTLTVETPDGPYTLEADWVIAC 180 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC-EEEEEEECCCCcEEEEeCEEEEC
Confidence 1100 01 1122477888999999999875 79999 999999988776 455544 345 37999999999
Q ss_pred cCCCCcccccc------------------------c-C-------------cee-eec----------------------
Q 017240 243 SGAASGKLLEY------------------------E-E-------------WSY-IPV---------------------- 261 (375)
Q Consensus 243 ~G~~s~~~~~~------------------------~-~-------------~~~-~p~---------------------- 261 (375)
||.+|.++..+ . . ... .|.
T Consensus 181 DG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (547)
T PRK08132 181 DGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEAEKK 260 (547)
T ss_pred CCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchhhcC
Confidence 99998764111 0 0 000 000
Q ss_pred ------------CC--C----------------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 262 ------------GG--S----------------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 262 ------------~~--~----------------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
+. . ..+..++|+++|||||.+.|..|||+|.+++|+..+++.|+..+++.
T Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~ 340 (547)
T PRK08132 261 PENVIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR 340 (547)
T ss_pred HHHHHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC
Confidence 00 0 01446799999999999999999999999999999999999988765
Q ss_pred CCccccc
Q 017240 312 HSRGRLT 318 (375)
Q Consensus 312 ~~~~~L~ 318 (375)
.....|.
T Consensus 341 ~~~~lL~ 347 (547)
T PRK08132 341 APDSLLD 347 (547)
T ss_pred CcHHHHH
Confidence 4444443
No 45
>PRK06753 hypothetical protein; Provisional
Probab=99.86 E-value=1.7e-20 Score=181.64 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=134.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhh---cccceEEeCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHV---WRDTVVYIDEDEP 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~---~~~~~~~~~~~~~ 178 (375)
.||+||||||+|+++|+.|++.|++|+|+|+.+... ...+++. +.++.+|+.+.+... .....++......
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 379999999999999999999999999999886532 2233333 455666664433221 1111111111111
Q ss_pred e-----eecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc
Q 017240 179 I-----LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 179 ~-----~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~ 252 (375)
. ........+++..|.+.|.+.+. +.+++ +++|++++.+++ .+.|++.+|.++.+|+||+|||.+|.++..
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~~~~vigadG~~S~vR~~ 157 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETD-KVTIHFADGESEAFDLCIGADGIHSKVRQS 157 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCC-cEEEEECCCCEEecCEEEECCCcchHHHHH
Confidence 0 01112236899999999988765 35788 999999987665 678888888889999999999998866421
Q ss_pred c-----------------------------------cC-ceeeec-----------------------------------
Q 017240 253 Y-----------------------------------EE-WSYIPV----------------------------------- 261 (375)
Q Consensus 253 ~-----------------------------------~~-~~~~p~----------------------------------- 261 (375)
+ .. ..++|.
T Consensus 158 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (373)
T PRK06753 158 VNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHY 237 (373)
T ss_pred hCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcC
Confidence 1 00 000000
Q ss_pred -----------C-CC------------CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 262 -----------G-GS------------LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 262 -----------~-~~------------~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
. .. ..+..++++++|||||.++|..|+|++.||.+|..+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 238 PNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred ChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 0 00 01235689999999999999999999999999999998884
No 46
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.86 E-value=3e-20 Score=190.66 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=143.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCcEEEECCCCCC---CCCCcCcH---HHHHhcCCchhhhhhcc--c-ceEEeCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPF---TNNYGVWE---DEFRDLGLEGCIEHVWR--D-TVVYIDE 175 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~-G~~V~liE~~~~~---~~~~g~~~---~~l~~~g~~~~~~~~~~--~-~~~~~~~ 175 (375)
..+||+||||||+||++|+.|++. |++|+|||+.+.. +...|++. +.|+.+|+.+.+..... . ...+...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 368999999999999999999995 9999999987532 23445544 56677787655432110 1 1111110
Q ss_pred C---------------CCeeecCCceeecHHHHHHHHHHHHHHCC--ceEE-EEEEEEEEEcCC--ceEEEEec------
Q 017240 176 D---------------EPILIGRAYGRVSRHLLHEELLRRCVESG--VSYL-SSKVESITESTS--GHRLVACE------ 229 (375)
Q Consensus 176 ~---------------~~~~~~~~~~~v~~~~l~~~L~~~~~~~g--v~i~-~~~v~~i~~~~~--~~~~V~~~------ 229 (375)
. .......++..+++..+.+.|.+.+.+.| +++. +++++++..+++ ..++|++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0 00001122346788889999999998876 4677 899999987642 23666654
Q ss_pred CC--eEEecCEEEEccCCCCcccccc------------------------c-----------C---ceeeec--------
Q 017240 230 HD--MIVPCRLATVASGAASGKLLEY------------------------E-----------E---WSYIPV-------- 261 (375)
Q Consensus 230 ~g--~~i~a~~vI~A~G~~s~~~~~~------------------------~-----------~---~~~~p~-------- 261 (375)
+| ++++||+||+|||++|.++..+ . . ...+|.
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~ 270 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVRL 270 (634)
T ss_pred CCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEEE
Confidence 34 5899999999999999776221 0 0 000110
Q ss_pred ---------C---------------------CC--C-------------------Cc----------cCCCEEEEccCCC
Q 017240 262 ---------G---------------------GS--L-------------------PN----------TEQRNLAFGAAAS 280 (375)
Q Consensus 262 ---------~---------------------~~--~-------------------~~----------~~~~v~liGdaa~ 280 (375)
. .+ . .+ ..++|+++|||+|
T Consensus 271 ~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH 350 (634)
T PRK08294 271 YVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACH 350 (634)
T ss_pred EEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccccceehhhcccccccccccccCCEEEEecCcc
Confidence 0 00 0 01 1369999999999
Q ss_pred CCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCcccc
Q 017240 281 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRL 317 (375)
Q Consensus 281 ~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~~~L 317 (375)
.+.|..|||+|.+|+||..+++.|+..+++......|
T Consensus 351 ~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL 387 (634)
T PRK08294 351 THSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELL 387 (634)
T ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 9999999999999999999999999988765444444
No 47
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.86 E-value=5.3e-20 Score=179.64 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=139.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcH---HHHHhcCCchhhhhhc--ccceEEeCC--C
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFRDLGLEGCIEHVW--RDTVVYIDE--D 176 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~---~~l~~~g~~~~~~~~~--~~~~~~~~~--~ 176 (375)
..||+||||||+|+++|+.|++.|++|+|||+.+.... ...++. +.++.+|+.+.+.... .....+.+. .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 37999999999999999999999999999999865432 222333 5677778755433211 111111111 1
Q ss_pred CC-----------eeecCCceeecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEcc
Q 017240 177 EP-----------ILIGRAYGRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (375)
Q Consensus 177 ~~-----------~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~ 243 (375)
.. ..++.++..+++..+.+.|.+.+.+. +++++ +++|+++..+++ .+.|++.+|.++.+|+||+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~Ad 162 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GVTVFDQQGNRWTGDALIGCD 162 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ceEEEEcCCCEEecCEEEECC
Confidence 10 11223345689999999999999876 49999 999999987665 577888888889999999999
Q ss_pred CCCCcccccc----------------------cC----------------ceeeec--------------C---------
Q 017240 244 GAASGKLLEY----------------------EE----------------WSYIPV--------------G--------- 262 (375)
Q Consensus 244 G~~s~~~~~~----------------------~~----------------~~~~p~--------------~--------- 262 (375)
|.+|..+..+ .+ ...+|. .
T Consensus 163 G~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (396)
T PRK08163 163 GVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKD 242 (396)
T ss_pred CcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcccccCC
Confidence 9987653110 00 000010 0
Q ss_pred ----------------------C-------------CC-CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 263 ----------------------G-------------SL-PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 263 ----------------------~-------------~~-~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
. +. .+..++++++|||||.++|..|||++.|+.||..+++.|..
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~ 322 (396)
T PRK08163 243 GSKEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEG 322 (396)
T ss_pred CCHHHHHHHHcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHh
Confidence 0 00 12346899999999999999999999999999999998864
No 48
>PRK06126 hypothetical protein; Provisional
Probab=99.86 E-value=2.5e-20 Score=189.32 Aligned_cols=212 Identities=19% Similarity=0.297 Sum_probs=141.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhhcc-----cceEE-
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHVWR-----DTVVY- 172 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~~~-----~~~~~- 172 (375)
+..+||+||||||+|+++|+.|++.|++|+|||+..... ...++.. +.|+.+|+.+.+..... ....+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 345899999999999999999999999999999875422 2223333 45566676544322110 00000
Q ss_pred ----------eC--CCCC-ee--------ecCC--ceeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEE
Q 017240 173 ----------ID--EDEP-IL--------IGRA--YGRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA 227 (375)
Q Consensus 173 ----------~~--~~~~-~~--------~~~~--~~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~ 227 (375)
+. .... .. +..+ ...+++..+.+.|.+.+.+ .|++++ +++|+++..+++ .+.++
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-~v~v~ 163 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD-GVTAT 163 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC-eEEEE
Confidence 00 0000 00 0011 1257888899999999876 489999 999999988776 44454
Q ss_pred ec---CC--eEEecCEEEEccCCCCcccccc-------------------------------------------------
Q 017240 228 CE---HD--MIVPCRLATVASGAASGKLLEY------------------------------------------------- 253 (375)
Q Consensus 228 ~~---~g--~~i~a~~vI~A~G~~s~~~~~~------------------------------------------------- 253 (375)
+. +| .++.+|+||+|||++|.++..+
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~ 243 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAI 243 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEE
Confidence 42 35 3789999999999999764211
Q ss_pred --cC-ceee--ec--------------------CCCC------------------CccCCCEEEEccCCCCCCCCChHHH
Q 017240 254 --EE-WSYI--PV--------------------GGSL------------------PNTEQRNLAFGAAASMVHPATGYSV 290 (375)
Q Consensus 254 --~~-~~~~--p~--------------------~~~~------------------~~~~~~v~liGdaa~~~~p~~G~Gi 290 (375)
.. |.+. +. +... .+..++|+++|||||.++|..|||+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~ 323 (545)
T PRK06126 244 DGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGM 323 (545)
T ss_pred CCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEEEeecccchhheehhhhccCCEEEechhhccCCCCcCccc
Confidence 00 0000 00 0000 0236799999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCCcccc
Q 017240 291 VRSLSEAPNYASAIAYILKHDHSRGRL 317 (375)
Q Consensus 291 ~~al~~a~~~a~~i~~~l~~~~~~~~L 317 (375)
|.+++|+..+++.|...+++......|
T Consensus 324 N~gieDa~~La~~La~~~~~~~~~~lL 350 (545)
T PRK06126 324 NTGIGDAVNLAWKLAAVLNGWAGPALL 350 (545)
T ss_pred chhHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 999999999999999887654333443
No 49
>PRK06847 hypothetical protein; Provisional
Probab=99.85 E-value=2.6e-20 Score=180.53 Aligned_cols=199 Identities=18% Similarity=0.212 Sum_probs=137.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCc---HHHHHhcCCchhhhhh---cccceEEeCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDEDE 177 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~---~~~l~~~g~~~~~~~~---~~~~~~~~~~~~ 177 (375)
..||+||||||+|+++|+.|++.|++|+|+|+..... ....++ .+.++.+|+.+.+... ......+.....
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 4699999999999999999999999999999876432 112222 2456666764332211 111111111111
Q ss_pred Ce-------eec---CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 178 PI-------LIG---RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 178 ~~-------~~~---~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
.. ... .....+++..+.+.|.+.+.+.|++++ +++|+++..+++ .+.|.+.+|.++.+|.||+|+|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-GVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EEEEEEcCCCEEEcCEEEECcCCC
Confidence 00 000 112367889999999999998999999 999999987766 577888888889999999999998
Q ss_pred Ccccccc-------------------------------------------------------------------------
Q 017240 247 SGKLLEY------------------------------------------------------------------------- 253 (375)
Q Consensus 247 s~~~~~~------------------------------------------------------------------------- 253 (375)
|..+..+
T Consensus 163 s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (375)
T PRK06847 163 SKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALLRE 242 (375)
T ss_pred cchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHHHH
Confidence 8654110
Q ss_pred --cCce--e----------------eecCC---CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 254 --EEWS--Y----------------IPVGG---SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 254 --~~~~--~----------------~p~~~---~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..+. . .|+.. ..++..++++++|||+|.+.|..|+|++.|++||..+++.|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 243 LLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred HHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh
Confidence 0000 0 00000 0113456899999999999999999999999999999998864
No 50
>PLN02985 squalene monooxygenase
Probab=99.85 E-value=2.2e-19 Score=179.99 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=134.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCcCc-----HHHHHhcCCchhhhhh----cccceEEeC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGVW-----EDEFRDLGLEGCIEHV----WRDTVVYID 174 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~-----~~~l~~~g~~~~~~~~----~~~~~~~~~ 174 (375)
+..+||+|||||++|+++|+.|++.|++|+|||+..... ...|.+ ...++++|+.+.+... +....++.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 456899999999999999999999999999999875322 222321 2567788876554321 122222211
Q ss_pred CCCC-eeec--------CCce-eecHHHHHHHHHHHHHHC-CceEEEEEEEEEEEcCCceEEEEe--cCCe--EEecCEE
Q 017240 175 EDEP-ILIG--------RAYG-RVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVAC--EHDM--IVPCRLA 239 (375)
Q Consensus 175 ~~~~-~~~~--------~~~~-~v~~~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~V~~--~~g~--~i~a~~v 239 (375)
.... ..+. .+.+ .+++..|.+.|.+.+.+. ||+++.+.++++..+++...+|++ .+|+ ++.||+|
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEE
Confidence 1110 0110 1122 678899999999999775 799885567777665543334543 4563 4679999
Q ss_pred EEccCCCCcccccc-------------------------------------------------------cCc--------
Q 017240 240 TVASGAASGKLLEY-------------------------------------------------------EEW-------- 256 (375)
Q Consensus 240 I~A~G~~s~~~~~~-------------------------------------------------------~~~-------- 256 (375)
|+|||.+|..+..+ ...
T Consensus 201 VgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~ 280 (514)
T PLN02985 201 VVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEM 280 (514)
T ss_pred EECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChhhH
Confidence 99999999765211 000
Q ss_pred ---------eeee------c-----CC-CC-----------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHH
Q 017240 257 ---------SYIP------V-----GG-SL-----------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAI 304 (375)
Q Consensus 257 ---------~~~p------~-----~~-~~-----------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i 304 (375)
+.+| + .. .. ....++++++|||+|+++|.+|||++.|+.|+..+++.|
T Consensus 281 ~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL 360 (514)
T PLN02985 281 STFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLL 360 (514)
T ss_pred HHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHh
Confidence 0000 0 00 00 122457999999999999999999999999999999999
Q ss_pred HH
Q 017240 305 AY 306 (375)
Q Consensus 305 ~~ 306 (375)
..
T Consensus 361 ~~ 362 (514)
T PLN02985 361 QP 362 (514)
T ss_pred hh
Confidence 75
No 51
>PTZ00367 squalene epoxidase; Provisional
Probab=99.85 E-value=2.5e-19 Score=180.62 Aligned_cols=203 Identities=21% Similarity=0.257 Sum_probs=133.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC-C-CCCCCc--Cc---HHHHHhcCCchhhhhhc---ccceEEeCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-P-FTNNYG--VW---EDEFRDLGLEGCIEHVW---RDTVVYIDE 175 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~-~-~~~~~g--~~---~~~l~~~g~~~~~~~~~---~~~~~~~~~ 175 (375)
..+||+||||||+|+++|+.|++.|++|+|||+.. . .....| ++ .+.|+++|+.+.+.... ....++..+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 45899999999999999999999999999999875 1 112222 22 25678888866543221 122222221
Q ss_pred CCCeeecC---Cce-eecHHHHHHHHHHHH---HHCCceEEEEEEEEEEEcCCc----e--EEEEecC------------
Q 017240 176 DEPILIGR---AYG-RVSRHLLHEELLRRC---VESGVSYLSSKVESITESTSG----H--RLVACEH------------ 230 (375)
Q Consensus 176 ~~~~~~~~---~~~-~v~~~~l~~~L~~~~---~~~gv~i~~~~v~~i~~~~~~----~--~~V~~~~------------ 230 (375)
+....... ..+ .+++..+.+.|.+.+ ...|++++.+.|+++..+++. . +.++..+
T Consensus 112 G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~ 191 (567)
T PTZ00367 112 GKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFRED 191 (567)
T ss_pred CCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCcccccccccccc
Confidence 21111111 112 456778888888877 346899886678887654431 2 3333333
Q ss_pred -----------CeEEecCEEEEccCCCCcccccc---------------------------------------------c
Q 017240 231 -----------DMIVPCRLATVASGAASGKLLEY---------------------------------------------E 254 (375)
Q Consensus 231 -----------g~~i~a~~vI~A~G~~s~~~~~~---------------------------------------------~ 254 (375)
++++.||+||+|||.+|..+..+ .
T Consensus 192 ~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~ 271 (567)
T PTZ00367 192 PPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSYRLDD 271 (567)
T ss_pred cccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEEEcCC
Confidence 56899999999999999765211 0
Q ss_pred Cc---------------------------eeee------c----C--CC-----------CCccCCCEEEEccCCCCCCC
Q 017240 255 EW---------------------------SYIP------V----G--GS-----------LPNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 255 ~~---------------------------~~~p------~----~--~~-----------~~~~~~~v~liGdaa~~~~p 284 (375)
+. +.+| + . .. .++..++++++|||+|+++|
T Consensus 272 ~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP 351 (567)
T PTZ00367 272 NELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHP 351 (567)
T ss_pred CeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCC
Confidence 00 0000 0 0 00 01235689999999999999
Q ss_pred CChHHHHHHHhhHHHHHHHHHHHH
Q 017240 285 ATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 285 ~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.+|||++.|++|+..+++.|....
T Consensus 352 ~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 352 LTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred cccccHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999997543
No 52
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.85 E-value=9.1e-20 Score=178.31 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=97.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhhc-ccceEEeCCCCC--
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHVW-RDTVVYIDEDEP-- 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~~-~~~~~~~~~~~~-- 178 (375)
-+|+||||||+|+++|+.|++.|++|+|+|+.+... ..+.++. +.|+.+|+.+.+.... ......+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 479999999999999999999999999999876432 2233333 4566777654432211 001111111000
Q ss_pred ------------eeecCCceeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEe---cCCeEEecCEEEE
Q 017240 179 ------------ILIGRAYGRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVAC---EHDMIVPCRLATV 241 (375)
Q Consensus 179 ------------~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~---~~g~~i~a~~vI~ 241 (375)
...+.++..+++..|.+.|.+.+.+ .|++++ +++|+++..+++ .+.|++ .+++++.+|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~-~v~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN-SITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC-ceEEEEEeCCCCcEEecCEEEE
Confidence 0112344468999999999999876 489999 999999987665 455655 3345799999999
Q ss_pred ccCCCCccc
Q 017240 242 ASGAASGKL 250 (375)
Q Consensus 242 A~G~~s~~~ 250 (375)
|||.+|.++
T Consensus 162 ADG~~S~vR 170 (400)
T PRK06475 162 CDGVWSMLR 170 (400)
T ss_pred CCCccHhHH
Confidence 999998654
No 53
>PRK05868 hypothetical protein; Validated
Probab=99.84 E-value=1.6e-19 Score=174.83 Aligned_cols=197 Identities=18% Similarity=0.153 Sum_probs=134.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCc---HHHHHhcCCchhhhhhc---ccceEEeCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHVW---RDTVVYIDEDEP 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~---~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~ 178 (375)
.||+||||||+|+++|+.|++.|++|+|||+.+... ...++. .+.++.+|+.+.+.... ....++......
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 489999999999999999999999999999886533 112222 35677788755443211 111111111110
Q ss_pred e-----------eecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 179 I-----------LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 179 ~-----------~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
. .+..+.-.+.+..|.+.|.+.+ ..|++++ +++|++++.+++ .++|++.+|.++++|+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-eEEEEECCCCeEEeCEEEECCCCC
Confidence 0 0111112466778888775533 4689999 999999987665 678889999899999999999999
Q ss_pred Ccccccc----------------------------------------------cC-c--eee---e--------------
Q 017240 247 SGKLLEY----------------------------------------------EE-W--SYI---P-------------- 260 (375)
Q Consensus 247 s~~~~~~----------------------------------------------~~-~--~~~---p-------------- 260 (375)
|.++..+ .+ . .++ +
T Consensus 160 S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (372)
T PRK05868 160 SNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQF 239 (372)
T ss_pred chHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCChHHHH
Confidence 9765211 00 0 000 0
Q ss_pred ------c---CCC------------------C------CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 261 ------V---GGS------------------L------PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 261 ------~---~~~------------------~------~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
+ +.. + .+..++|+++|||||.+.|..|||++.||.+|..+|+.|..
T Consensus 240 ~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~ 318 (372)
T PRK05868 240 AELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKA 318 (372)
T ss_pred HHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHh
Confidence 0 000 0 13456999999999999999999999999999999999954
No 54
>PRK07236 hypothetical protein; Provisional
Probab=99.80 E-value=9.3e-18 Score=163.39 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=94.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCc--CcH---HHHHhcCCchhhhhhcc-cceEEeCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYG--VWE---DEFRDLGLEGCIEHVWR-DTVVYIDEDEP 178 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g--~~~---~~l~~~g~~~~~~~~~~-~~~~~~~~~~~ 178 (375)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... ...| ++. +.++.+|+......... ....+.+....
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 4799999999999999999999999999999876322 1222 233 56777777543211111 11122221111
Q ss_pred eeec--CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 179 ILIG--RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 179 ~~~~--~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
.... .+...+.+..+.+.|.+.+ .+++++ +++|+++..+++ .+.|++.+|.++.+|+||+|||.+|.++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGD-RVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCC-eEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 1111 1111245566666666543 356788 999999988766 6788888998999999999999998764
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.79 E-value=6.7e-18 Score=165.87 Aligned_cols=138 Identities=24% Similarity=0.245 Sum_probs=94.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEECCCCCCC---CCCcCcH---HHHHhcCCchhhhhhcc-------cce-EEe
Q 017240 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFT---NNYGVWE---DEFRDLGLEGCIEHVWR-------DTV-VYI 173 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~~~~---~~~g~~~---~~l~~~g~~~~~~~~~~-------~~~-~~~ 173 (375)
+|+|||||++||++|+.|++.| ++|+|+|+.+... ....++. +.++.+|+.+.+..... ... .+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999986543 1222233 56777787544332211 100 111
Q ss_pred CCCCCee----ec--CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 174 DEDEPIL----IG--RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 174 ~~~~~~~----~~--~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
+...... .. .++..++|..|.+.|.+.+.. +.++ +++|+++..+++ .+.|.+.+|.++.+|+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAE-EVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCC-cEEEEEcCCCEEEeeEEEECCCcc
Confidence 1111100 01 112257888999999887643 4567 999999988766 578888888889999999999998
Q ss_pred Ccc
Q 017240 247 SGK 249 (375)
Q Consensus 247 s~~ 249 (375)
|.+
T Consensus 159 S~v 161 (414)
T TIGR03219 159 SAL 161 (414)
T ss_pred HHH
Confidence 853
No 56
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.78 E-value=4.8e-17 Score=165.31 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=134.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC--C-----CCCcCcH---HHHHhcCCc--hhhhhhc--ccce-
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--T-----NNYGVWE---DEFRDLGLE--GCIEHVW--RDTV- 170 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~--~-----~~~g~~~---~~l~~~g~~--~~~~~~~--~~~~- 170 (375)
+..+|+||||||+||++|+.|++.|++|+|||+.... . ....++. +.|+.+|+. ..+.... ....
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 4589999999999999999999999999999987521 1 1233443 456666642 1111100 0000
Q ss_pred ------------EEeCCCCC-eeecCCce-eecHHHHHHHHHHHHHHCCce-EE-EEEEEEEEEcCCceEEEEecCCeEE
Q 017240 171 ------------VYIDEDEP-ILIGRAYG-RVSRHLLHEELLRRCVESGVS-YL-SSKVESITESTSGHRLVACEHDMIV 234 (375)
Q Consensus 171 ------------~~~~~~~~-~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~-i~-~~~v~~i~~~~~~~~~V~~~~g~~i 234 (375)
..++...+ ...+.++. .++|..|.+.|.+.+ +.+ ++ +++|+++..+++ .++|++.+|.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d-~VtV~~~dG~ti 235 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSGD-KVTVVLENGQRY 235 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCC-EEEEEECCCCEE
Confidence 11111000 01122222 688999999997654 333 45 789999987766 677888888889
Q ss_pred ecCEEEEccCCCCcccccc----------------------------------------------cC-c-e-e-e--ec-
Q 017240 235 PCRLATVASGAASGKLLEY----------------------------------------------EE-W-S-Y-I--PV- 261 (375)
Q Consensus 235 ~a~~vI~A~G~~s~~~~~~----------------------------------------------~~-~-~-~-~--p~- 261 (375)
.+|+||+|+|.+|.++..+ .+ . + . . |.
T Consensus 236 ~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~ 315 (668)
T PLN02927 236 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG 315 (668)
T ss_pred EcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCcc
Confidence 9999999999999765211 00 0 0 0 0 00
Q ss_pred ------------------------------C-C-----------C-CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHH
Q 017240 262 ------------------------------G-G-----------S-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAP 298 (375)
Q Consensus 262 ------------------------------~-~-----------~-~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~ 298 (375)
. . + ..+..++++++|||+|.++|..|+|.+.|+.|+.
T Consensus 316 ~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~ 395 (668)
T PLN02927 316 GADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSF 395 (668)
T ss_pred ccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHH
Confidence 0 0 0 0133469999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 017240 299 NYASAIAYILKH 310 (375)
Q Consensus 299 ~~a~~i~~~l~~ 310 (375)
.++..|.+.++.
T Consensus 396 ~La~~L~~~~~~ 407 (668)
T PLN02927 396 QLALELDEAWKQ 407 (668)
T ss_pred HHHHHHHHhhcc
Confidence 999999887643
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=154.43 Aligned_cols=202 Identities=17% Similarity=0.159 Sum_probs=123.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC-CC--CCcCc---HHHHHhcCCchhhhhhcccce---EEeCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-TN--NYGVW---EDEFRDLGLEGCIEHVWRDTV---VYIDEDEP 178 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~-~~--~~g~~---~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~ 178 (375)
.+|||||||++|+++|..|.++|++|+|+|+.... +. ..+++ .+.++..++...+........ ........
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~ 82 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGK 82 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCCC
Confidence 58999999999999999999999999999975432 21 12222 244566665554443322111 11111111
Q ss_pred eeecCCce-------eecHHHHHH-HHHHHHHHCCceEE-E----EEEEEEEEcCCceEEEEecCCeEEecCEEEEccCC
Q 017240 179 ILIGRAYG-------RVSRHLLHE-ELLRRCVESGVSYL-S----SKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 179 ~~~~~~~~-------~v~~~~l~~-~L~~~~~~~gv~i~-~----~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
.....+++ .+.+..+.+ .|.+......+++. + ..+..++.... ...|++.+|.++.+|++|+|||+
T Consensus 83 ~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~-~~~v~l~~g~~~~~dlligCDGa 161 (420)
T KOG2614|consen 83 EVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK-KLVVHLSDGTTVKGDLLIGCDGA 161 (420)
T ss_pred eeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc-ccceecCCCcEEEeeEEEEcCch
Confidence 11111111 133444444 44443333345444 2 23333433322 35678889999999999999999
Q ss_pred CCcccccc----------------------------------------------------c----Cce------------
Q 017240 246 ASGKLLEY----------------------------------------------------E----EWS------------ 257 (375)
Q Consensus 246 ~s~~~~~~----------------------------------------------------~----~~~------------ 257 (375)
+|.++..+ . .+.
T Consensus 162 ~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~ 241 (420)
T KOG2614|consen 162 YSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLK 241 (420)
T ss_pred HHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHh
Confidence 99775211 0 000
Q ss_pred --------eee-------------------c--CCC-----CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHH
Q 017240 258 --------YIP-------------------V--GGS-----LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASA 303 (375)
Q Consensus 258 --------~~p-------------------~--~~~-----~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~ 303 (375)
.+| . ..+ .+..+.+++++|||+|+|-|..|||++.|+.|+..+++.
T Consensus 242 ~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~ 321 (420)
T KOG2614|consen 242 KTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAEC 321 (420)
T ss_pred hhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHH
Confidence 000 0 000 013355899999999999999999999999999999999
Q ss_pred HHHHHhc
Q 017240 304 IAYILKH 310 (375)
Q Consensus 304 i~~~l~~ 310 (375)
+.++.+.
T Consensus 322 L~~~~~d 328 (420)
T KOG2614|consen 322 LDEAIND 328 (420)
T ss_pred HHHhccc
Confidence 9998863
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.73 E-value=6.8e-17 Score=159.75 Aligned_cols=121 Identities=23% Similarity=0.274 Sum_probs=83.8
Q ss_pred eecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCc-eEEEEecCCeEEecCEEEEccCCCCcccccc------------
Q 017240 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAASGKLLEY------------ 253 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~-~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~------------ 253 (375)
++++..|++.|.+.+.+.||+++...|+++..++++ ...|++.+|++++||+||+|+|..+....+.
T Consensus 150 hlDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L 229 (454)
T PF04820_consen 150 HLDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWL 229 (454)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTC
T ss_pred EEeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccc
Confidence 899999999999999999999995568888777654 4578899999999999999999766543220
Q ss_pred --------------------------cCc-eeeecC-------------------------------------------C
Q 017240 254 --------------------------EEW-SYIPVG-------------------------------------------G 263 (375)
Q Consensus 254 --------------------------~~~-~~~p~~-------------------------------------------~ 263 (375)
.+| +.||+. .
T Consensus 230 ~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~~s~~~A~~~l~~~l~~~~~~~~~~i~~~~g~ 309 (454)
T PF04820_consen 230 PNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGSGYVYSSDFISDDEAEAELLAYLGGSPEAEPRHIRFRSGR 309 (454)
T ss_dssp EEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEEEEEEETTTSHHHHHHHHHHHHHTCHCTTSCEEEE-S-EE
T ss_pred cccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceEEEEeccccCCHHHHHHHHHHhcchhhhcchhhhcccccc
Confidence 111 223311 0
Q ss_pred CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 264 SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 264 ~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
......+++++|||+++.+||+.+.|+..++.++.. |.+.+...
T Consensus 310 ~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~----l~~~l~~~ 353 (454)
T PF04820_consen 310 RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEA----LAEALPDD 353 (454)
T ss_dssp ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHH----HHHTHHCT
T ss_pred hhhcccCCEEEEcchhhccCccccccHHHHHHHHHH----HHHhcccC
Confidence 012447899999999999999999999999985544 55555443
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.70 E-value=1.5e-16 Score=166.99 Aligned_cols=129 Identities=23% Similarity=0.316 Sum_probs=85.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCC---CCCCcCcHHHHHhcCCch-----hhh---hhcccceEEeC
Q 017240 108 LDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPF---TNNYGVWEDEFRDLGLEG-----CIE---HVWRDTVVYID 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~---~~~~g~~~~~l~~~g~~~-----~~~---~~~~~~~~~~~ 174 (375)
++|+||||||+|+++|+.|++. |++|+|+|+.... +....++...++.+...+ .+. ..|....+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 222223444444332211 111 12333333332
Q ss_pred CCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 175 EDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
.......+..+..++|..|.+.|.+.+.+.|++++ +++|+++... .+.+|+||+|||.+|.+
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLNSRI 143 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCCHHH
Confidence 11111122334468899999999999999999999 8887655311 24789999999988754
No 60
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.70 E-value=4.7e-16 Score=142.48 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=124.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-Cc--C----------cHHHHHhcCCchhhhhhcccceEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YG--V----------WEDEFRDLGLEGCIEHVWRDTVVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~g--~----------~~~~l~~~g~~~~~~~~~~~~~~~~ 173 (375)
++||+||||||||+++|++|++.|++|+|||+....+.. ++ . ..+.+++++++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~------------- 91 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY------------- 91 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc-------------
Confidence 589999999999999999999999999999988654321 11 0 011222222211
Q ss_pred CCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC-ceEEEEec-----------CCeEEecCEEE
Q 017240 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACE-----------HDMIVPCRLAT 240 (375)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~V~~~-----------~g~~i~a~~vI 240 (375)
. .....+..+++..+...|.+.+.+.|++++ ++.|+++..+++ ....|.+. +..+++|+.||
T Consensus 92 ~-----~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 92 K-----EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred e-----eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 0 001123357888999999999999999999 999999987555 34444332 22579999999
Q ss_pred EccCCCCcccccccC-----ceeee----c---C------CCCCccCCCEEEEccCCCCCCCCC--hHHHHHHHhhHHHH
Q 017240 241 VASGAASGKLLEYEE-----WSYIP----V---G------GSLPNTEQRNLAFGAAASMVHPAT--GYSVVRSLSEAPNY 300 (375)
Q Consensus 241 ~A~G~~s~~~~~~~~-----~~~~p----~---~------~~~~~~~~~v~liGdaa~~~~p~~--G~Gi~~al~~a~~~ 300 (375)
+|||.++.....+.. ...+| . . .......+++++.|-++..++... |=-+...+.+++.+
T Consensus 167 ~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~ 246 (257)
T PRK04176 167 DATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKV 246 (257)
T ss_pred EEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHH
Confidence 999988865522211 01111 0 0 001233568999999888887543 33345567899999
Q ss_pred HHHHHHHHhc
Q 017240 301 ASAIAYILKH 310 (375)
Q Consensus 301 a~~i~~~l~~ 310 (375)
|+.+.+.|+.
T Consensus 247 a~~~~~~~~~ 256 (257)
T PRK04176 247 AELILEKLKK 256 (257)
T ss_pred HHHHHHHhhc
Confidence 9999887753
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.70 E-value=3e-16 Score=144.87 Aligned_cols=201 Identities=25% Similarity=0.308 Sum_probs=137.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCC-cC-----cHHHHHhcCCchhhhhh---cc-cceEEeC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-GV-----WEDEFRDLGLEGCIEHV---WR-DTVVYID 174 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~-g~-----~~~~l~~~g~~~~~~~~---~~-~~~~~~~ 174 (375)
+..+||+|||||.+|.++|+.|+|.|.+|.||||+..-++.. |- -...+.++|+++++... +- ...++.+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 456899999999999999999999999999999985433211 10 11457788888876532 22 2233333
Q ss_pred CCCCeeec--------CCce-eecHHHHHHHHHHHHHH-CCceEEEEEEEEEEEcCCceEEEEec--CC--eEEecCEEE
Q 017240 175 EDEPILIG--------RAYG-RVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTSGHRLVACE--HD--MIVPCRLAT 240 (375)
Q Consensus 175 ~~~~~~~~--------~~~~-~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~~~~~V~~~--~g--~~i~a~~vI 240 (375)
..+ .... .+.| ..+...|.+.|++.+.. .+|++.+..|.++.++++.+.+|+++ +| .+..|.+.|
T Consensus 123 gk~-v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTv 201 (509)
T KOG1298|consen 123 GKE-VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTV 201 (509)
T ss_pred Cce-eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEE
Confidence 221 1111 1112 46667899999998865 68999988888888777655566664 33 367799999
Q ss_pred EccCCCCcccccc-------------------------------------------------------------------
Q 017240 241 VASGAASGKLLEY------------------------------------------------------------------- 253 (375)
Q Consensus 241 ~A~G~~s~~~~~~------------------------------------------------------------------- 253 (375)
+|||.+|..+..+
T Consensus 202 VCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem 281 (509)
T KOG1298|consen 202 VCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEM 281 (509)
T ss_pred EecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhH
Confidence 9999998765221
Q ss_pred ------cCceeeec-----------CC--------CC---CccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 254 ------EEWSYIPV-----------GG--------SL---PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 254 ------~~~~~~p~-----------~~--------~~---~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
.-.+.+|. .+ .+ +....+++++|||..+-||.+|.||.-++.|...+-+.|.
T Consensus 282 ~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~ 361 (509)
T KOG1298|consen 282 ATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLK 361 (509)
T ss_pred HHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhc
Confidence 00011110 00 01 1335689999999999999999999999999988766654
Q ss_pred H
Q 017240 306 Y 306 (375)
Q Consensus 306 ~ 306 (375)
-
T Consensus 362 p 362 (509)
T KOG1298|consen 362 P 362 (509)
T ss_pred c
Confidence 3
No 62
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1e-15 Score=131.78 Aligned_cols=185 Identities=20% Similarity=0.230 Sum_probs=124.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC-CCcC------------cHHHHHhcCCchhhhhhcccceEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGV------------WEDEFRDLGLEGCIEHVWRDTVVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~~g~------------~~~~l~~~g~~~~~~~~~~~~~~~~ 173 (375)
+.||+||||||+||+||++|++.|++|+|||++..++. .|+- ....|++++++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y------------- 96 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY------------- 96 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcc-------------
Confidence 47999999999999999999999999999999865542 2221 124455555532
Q ss_pred CCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC-ceEEEEec-----------CCeEEecCEEE
Q 017240 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACE-----------HDMIVPCRLAT 240 (375)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~V~~~-----------~g~~i~a~~vI 240 (375)
......+...+..++...|..++.+.|++|+ .+.|+++...++ ++.+|.++ |-.++++++||
T Consensus 97 -----e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~Vv 171 (262)
T COG1635 97 -----EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVV 171 (262)
T ss_pred -----eecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEE
Confidence 1112234467888999999999999999999 999999988776 44444432 23589999999
Q ss_pred EccCCCCccc------cc-c-----cCceeeecC------CCCCccCCCEEEEccCCCCCCCCC--hHHHHHHHhhHHHH
Q 017240 241 VASGAASGKL------LE-Y-----EEWSYIPVG------GSLPNTEQRNLAFGAAASMVHPAT--GYSVVRSLSEAPNY 300 (375)
Q Consensus 241 ~A~G~~s~~~------~~-~-----~~~~~~p~~------~~~~~~~~~v~liGdaa~~~~p~~--G~Gi~~al~~a~~~ 300 (375)
+|||.-.... .. + .+.+.+... .......++.++.|-+...++-+. |=-+...+.+++.+
T Consensus 172 DaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkka 251 (262)
T COG1635 172 DATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKA 251 (262)
T ss_pred eCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHH
Confidence 9999554332 10 0 011111100 001133567889998877776433 33345567899999
Q ss_pred HHHHHHHHh
Q 017240 301 ASAIAYILK 309 (375)
Q Consensus 301 a~~i~~~l~ 309 (375)
|+.+.+.|+
T Consensus 252 Ae~i~e~L~ 260 (262)
T COG1635 252 AEEILEKLK 260 (262)
T ss_pred HHHHHHHhh
Confidence 999888775
No 63
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.68 E-value=1.6e-16 Score=148.01 Aligned_cols=257 Identities=20% Similarity=0.219 Sum_probs=164.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHC----CCcEEEECCCCC--CC-----CCC--------cCcHHHHHhcCCchhhhhhcc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLP--FT-----NNY--------GVWEDEFRDLGLEGCIEHVWR 167 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~----G~~V~liE~~~~--~~-----~~~--------g~~~~~l~~~g~~~~~~~~~~ 167 (375)
.|||+||||||+|+++|..|... .++|.|+|-... .. ..| --....++.++.++.+.+...
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 69999999999999999999864 468999986621 11 111 002234555555554433221
Q ss_pred c----ce---------EEeCCCCCeeecCCce-eecHHHHHHHHHH--HHHH-CCceEE-EEEEEEEEEc------CCc-
Q 017240 168 D----TV---------VYIDEDEPILIGRAYG-RVSRHLLHEELLR--RCVE-SGVSYL-SSKVESITES------TSG- 222 (375)
Q Consensus 168 ~----~~---------~~~~~~~~~~~~~~~~-~v~~~~l~~~L~~--~~~~-~gv~i~-~~~v~~i~~~------~~~- 222 (375)
. .. +.++.+ ..+.+.+ ++....+...|.. ...+ .+|+++ .+++.++... +++
T Consensus 116 ~~~~~~~v~Ds~s~a~I~~~~d---~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAALILFDHD---NVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred ccccceeeecccchhhhhhccc---cccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 1 11 111111 1121223 5666777777773 3333 579999 8888777652 222
Q ss_pred eEEEEecCCeEEecCEEEEccCCCCccccc---------c----------------------------------------
Q 017240 223 HRLVACEHDMIVPCRLATVASGAASGKLLE---------Y---------------------------------------- 253 (375)
Q Consensus 223 ~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~---------~---------------------------------------- 253 (375)
.+.+++.+|..+.+|++|.|+|.+|..+.. |
T Consensus 193 ~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d~~ 272 (481)
T KOG3855|consen 193 WFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDTL 272 (481)
T ss_pred eEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccccc
Confidence 567788899999999999999999877621 1
Q ss_pred -------------------------------------------------------------------------------c
Q 017240 254 -------------------------------------------------------------------------------E 254 (375)
Q Consensus 254 -------------------------------------------------------------------------------~ 254 (375)
.
T Consensus 273 s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dk 352 (481)
T KOG3855|consen 273 SSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDK 352 (481)
T ss_pred ccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEeccc
Confidence 0
Q ss_pred CceeeecCC--CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCCCc---ccccc-------ccc
Q 017240 255 EWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSR---GRLTH-------EQS 322 (375)
Q Consensus 255 ~~~~~p~~~--~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~~~---~~L~~-------~~~ 322 (375)
....+|++. ...+..+++.++||+||-+||..|||++.+..+...+.+.+.++...+.+. ..|.. ...
T Consensus 353 sRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~ 432 (481)
T KOG3855|consen 353 SRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNY 432 (481)
T ss_pred ceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcc
Confidence 001122211 113668899999999999999999999999999999999999998877532 22221 000
Q ss_pred hhHHHHHHHHhhCchhhHHHHHHHHHhHHHHhcCCHHHHHHHHHHh
Q 017240 323 NENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 368 (375)
Q Consensus 323 ~~~~~~~~w~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~f~~~ 368 (375)
..........++|..+......+|.+||.+...+.| ++.++..+
T Consensus 433 ~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~P--vKN~im~~ 476 (481)
T KOG3855|consen 433 VLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAP--VKNFIMVT 476 (481)
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeccchhhcccccc--HHHHHHHH
Confidence 122233455566666666666777888887777776 55665543
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.68 E-value=1.8e-15 Score=138.24 Aligned_cols=196 Identities=19% Similarity=0.192 Sum_probs=121.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC-CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
++||+||||||+|+++|+.|++.|++|+||||....+. .|+-- ..+....+............+.+ ...+..+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg-~~~~~~~~~~~~~~~l~~~gi~~-----~~~~~g~ 94 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG-MLFSKIVVEKPAHEILDEFGIRY-----EDEGDGY 94 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC-cceecccccchHHHHHHHCCCCe-----eeccCce
Confidence 58999999999999999999999999999999876542 11110 00111111100000111000000 0111223
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC--ceEEEEec-----------CCeEEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS--GHRLVACE-----------HDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~--~~~~V~~~-----------~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
...++..+.+.|.+.+.+.|++++ ++.|+++..+++ ....|.+. +..+++|++||+|||..+....
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 345788999999999999999999 999999987665 24455543 2357999999999997764321
Q ss_pred cc---cC--c--eeee----c---C------CCCCccCCCEEEEccCCCCCCCCC--hHHHHHHHhhHHHHHHHHHHHH
Q 017240 252 EY---EE--W--SYIP----V---G------GSLPNTEQRNLAFGAAASMVHPAT--GYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 252 ~~---~~--~--~~~p----~---~------~~~~~~~~~v~liGdaa~~~~p~~--G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.. .. . .-+| . . .......+++++.|-++..++... |=-+...+.+++.+|+.+.+.|
T Consensus 175 ~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 175 VCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred HHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 10 00 0 0001 0 0 011234568999999888877543 3334556789999999887765
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.63 E-value=6.8e-15 Score=137.92 Aligned_cols=143 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC----------C---CcCcHHHHHhcCC-----chhhhhhccc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----------N---YGVWEDEFRDLGL-----EGCIEHVWRD 168 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~----------~---~g~~~~~l~~~g~-----~~~~~~~~~~ 168 (375)
.+||+||||||||++||+.+++.|.+|+|||+.+..+. | .....+.+....- ...+.++...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 58999999999999999999999999999999876542 1 1112222322220 1111111100
Q ss_pred -ceEEeCCCCCe----eecCCcee-ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEE
Q 017240 169 -TVVYIDEDEPI----LIGRAYGR-VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (375)
Q Consensus 169 -~~~~~~~~~~~----~~~~~~~~-v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~ 241 (375)
...++...... ..++.|.. .....+.+.|..++++.||+++ +++|.++..++. .+.|.+.+|.+++||.+|+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-GFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-eEEEEcCCCCEEEccEEEE
Confidence 00111111111 11222222 3456899999999999999999 999999998875 7899999998899999999
Q ss_pred ccCCCCccc
Q 017240 242 ASGAASGKL 250 (375)
Q Consensus 242 A~G~~s~~~ 250 (375)
|+|+.|.+.
T Consensus 162 AtGG~S~P~ 170 (408)
T COG2081 162 ATGGKSWPK 170 (408)
T ss_pred ecCCcCCCC
Confidence 999887654
No 66
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.61 E-value=6.8e-16 Score=136.50 Aligned_cols=167 Identities=17% Similarity=0.090 Sum_probs=93.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCe---eecCCce
Q 017240 111 VVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPI---LIGRAYG 186 (375)
Q Consensus 111 vIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 186 (375)
+||||||+|+++|..|.+.|.+ |+|||++...+..| ...-....+..............+...... ....+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVW---RRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHH---HCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCee---EEeCCCCccccCccccccccCCcccccccccCCCCCCCcc
Confidence 7999999999999999999999 99999987655443 211111011000000000000000000000 0000112
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-ccccC---ceeeec
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEYEE---WSYIPV 261 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~~~---~~~~p~ 261 (375)
.....++.++|.+.+++.+++++ +++|+++..+++ .|.|++.+++++.|+.||+|+|..+... ..+.. ...+..
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~ 156 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-GWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHS 156 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-TEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEG
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-EEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEeh
Confidence 46788899999999999999999 999999999988 5999999988899999999999765332 22222 122221
Q ss_pred ---CCCCCccCCCEEEEccCCCC
Q 017240 262 ---GGSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 262 ---~~~~~~~~~~v~liGdaa~~ 281 (375)
.......+++|++||.+.++
T Consensus 157 ~~~~~~~~~~~k~V~VVG~G~SA 179 (203)
T PF13738_consen 157 ADWRDPEDFKGKRVVVVGGGNSA 179 (203)
T ss_dssp GG-STTGGCTTSEEEEE--SHHH
T ss_pred hhcCChhhcCCCcEEEEcChHHH
Confidence 22224567899999988533
No 67
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.61 E-value=9e-15 Score=136.37 Aligned_cols=208 Identities=20% Similarity=0.225 Sum_probs=134.6
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHC------CCcEEEECCCCCCCCCC--------cCcHHHHHhc---CCchhhhhhc
Q 017240 104 GNGILDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNNY--------GVWEDEFRDL---GLEGCIEHVW 166 (375)
Q Consensus 104 ~~~~~DVvIIGgG~aGl~aA~~La~~------G~~V~liE~~~~~~~~~--------g~~~~~l~~~---g~~~~~~~~~ 166 (375)
+...+||+|||||||||++|+.|.+. .++|.|+||....+... +.|.+.+.+. +.+-.. .+.
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t-~vT 151 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNT-PVT 151 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccc-ccc
Confidence 34579999999999999999999775 46899999987665321 1122221111 111000 011
Q ss_pred ccceEEeCCCCCeee-------cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecC-------
Q 017240 167 RDTVVYIDEDEPILI-------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEH------- 230 (375)
Q Consensus 167 ~~~~~~~~~~~~~~~-------~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~------- 230 (375)
.+...++.....+.. ......+.-..+.++|-+++++.||+|+ +..+.++..++++ +.+|.|+|
T Consensus 152 ~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 152 SDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred ccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 111222222211111 1112267778999999999999999999 8888888776654 56676654
Q ss_pred --------CeEEecCEEEEccCCCCcccccc--------------------------------------cCce-------
Q 017240 231 --------DMIVPCRLATVASGAASGKLLEY--------------------------------------EEWS------- 257 (375)
Q Consensus 231 --------g~~i~a~~vI~A~G~~s~~~~~~--------------------------------------~~~~------- 257 (375)
|.+++|+..|.|.|.+.....+. .+|+
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~tYG 311 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDTYG 311 (621)
T ss_pred CccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccCCccC
Confidence 35899999999999986543111 0000
Q ss_pred -------------------------------------eee--------------------cCC--CCC-ccCCCEEEEcc
Q 017240 258 -------------------------------------YIP--------------------VGG--SLP-NTEQRNLAFGA 277 (375)
Q Consensus 258 -------------------------------------~~p--------------------~~~--~~~-~~~~~v~liGd 277 (375)
..| .++ .+| ....+-++||-
T Consensus 312 GsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG~liGc 391 (621)
T KOG2415|consen 312 GSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGGALIGC 391 (621)
T ss_pred ceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCceEeec
Confidence 000 000 011 12334488999
Q ss_pred CCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 278 AASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 278 aa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
.|++++...-.|.++||.++..+|+.|.+.+++..
T Consensus 392 SaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~ 426 (621)
T KOG2415|consen 392 SAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLP 426 (621)
T ss_pred ccccccccccccchhhhhcchhHHHHHHHHHhcCc
Confidence 99999999999999999999999999999997764
No 68
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.59 E-value=2.4e-14 Score=139.19 Aligned_cols=139 Identities=23% Similarity=0.277 Sum_probs=81.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC----------C--------------Cc----CcHHHHHhcCCc
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----------N--------------YG----VWEDEFRDLGLE 159 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~----------~--------------~g----~~~~~l~~~g~~ 159 (375)
|||+|||||||||+||+.|++.|.+|+|+|++...+. | ++ .....+..+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999875431 0 00 112223333332
Q ss_pred hhhhhhcccceEEeCCCCCeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecC
Q 017240 160 GCIEHVWRDTVVYIDEDEPILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCR 237 (375)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~ 237 (375)
+.+..+............ ++.|. .-....+.+.|.+.+++.||+++ +++|.++..++++.+.|+++++.++.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~----gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~ 156 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEED----GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD 156 (409)
T ss_dssp HHHHHHHHTT--EEE-ST----TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES
T ss_pred HHHHHHHhcCCeEEEcCC----CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC
Confidence 222222211111111000 11111 12456889999999999999999 9999999988775688999667799999
Q ss_pred EEEEccCCCCccc
Q 017240 238 LATVASGAASGKL 250 (375)
Q Consensus 238 ~vI~A~G~~s~~~ 250 (375)
.||+|+|+.|.+-
T Consensus 157 ~vILAtGG~S~p~ 169 (409)
T PF03486_consen 157 AVILATGGKSYPK 169 (409)
T ss_dssp EEEE----SSSGG
T ss_pred EEEEecCCCCccc
Confidence 9999999877543
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.57 E-value=5.8e-14 Score=121.81 Aligned_cols=125 Identities=22% Similarity=0.317 Sum_probs=82.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCcC------------cHHHHHhcCCchhhhhhcccceEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGV------------WEDEFRDLGLEGCIEHVWRDTVVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~------------~~~~l~~~g~~~~~~~~~~~~~~~~ 173 (375)
++||+||||||+||+||+.|++.|++|+|||++...+ ..|+- ....+++++++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y------------- 83 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPY------------- 83 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT----------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCcee-------------
Confidence 5899999999999999999999999999999886544 22311 123344444421
Q ss_pred CCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC-CceEEEEec-----------CCeEEecCEEE
Q 017240 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACE-----------HDMIVPCRLAT 240 (375)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~V~~~-----------~g~~i~a~~vI 240 (375)
...+..+...|..++...|...+.+.|++++ .+.|+++...+ +++.+|.++ |-.++++++||
T Consensus 84 -----~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~Vi 158 (230)
T PF01946_consen 84 -----EEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVI 158 (230)
T ss_dssp -----EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEE
T ss_pred -----EEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEE
Confidence 1122223457888999999999988999999 89999998776 444455443 22589999999
Q ss_pred EccCCCCcc
Q 017240 241 VASGAASGK 249 (375)
Q Consensus 241 ~A~G~~s~~ 249 (375)
+|||.-...
T Consensus 159 DaTGHda~v 167 (230)
T PF01946_consen 159 DATGHDAEV 167 (230)
T ss_dssp E---SSSSS
T ss_pred eCCCCchHH
Confidence 999965543
No 70
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.5e-13 Score=126.84 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=102.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
.|||+|||||||||+||+++++.|++ ++|+|+..+.+ ....+. .. ..+....
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg-~~~~~~---------------------~v-----enypg~~ 55 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG-QLTKTT---------------------DV-----ENYPGFP 55 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCC-ccccce---------------------ee-----cCCCCCc
Confidence 58999999999999999999999999 77777764431 100000 00 0000111
Q ss_pred eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc-----cc--Ccee
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE-----YE--EWSY 258 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~-----~~--~~~~ 258 (375)
+.+....|.+.+.+++...|+++....|..++..++ .+.|++.++. ++|+.||+|+|+....+.- +. ...+
T Consensus 56 ~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~y 133 (305)
T COG0492 56 GGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSY 133 (305)
T ss_pred cCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEE
Confidence 236677899999999999999999888888888765 7899999985 9999999999987655521 21 1233
Q ss_pred eecCCCCCccCCCEEEEccCCCCC
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~ 282 (375)
.+...- .+.++.++++|++.+++
T Consensus 134 c~~cdg-~~~~k~v~ViGgG~sAv 156 (305)
T COG0492 134 CATCDG-FFKGKDVVVIGGGDSAV 156 (305)
T ss_pred eeecCc-cccCCeEEEEcCCHHHH
Confidence 333222 45677999999885443
No 71
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.53 E-value=2.3e-13 Score=134.78 Aligned_cols=178 Identities=15% Similarity=0.045 Sum_probs=107.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHH-HhcCCchh----hhhhcccceEE-------e-
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEF-RDLGLEGC----IEHVWRDTVVY-------I- 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l-~~~g~~~~----~~~~~~~~~~~-------~- 173 (375)
..+|+||||||+||++|.+|.+.|++|+|+|+....+..|......- +.+++... ....+...... +
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 47999999999999999999999999999999887664442211100 11111100 00011110000 0
Q ss_pred CCCCCeee---c-CCceeecHHHHHHHHHHHHHHCCce--EE-EEEEEEEEEcCCceEEEEecCC----eEEecCEEEEc
Q 017240 174 DEDEPILI---G-RAYGRVSRHLLHEELLRRCVESGVS--YL-SSKVESITESTSGHRLVACEHD----MIVPCRLATVA 242 (375)
Q Consensus 174 ~~~~~~~~---~-~~~~~v~~~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~~~~~V~~~~g----~~i~a~~vI~A 242 (375)
+-...... . .........++.++|.+.+++.|+. |+ +++|+++...++ .|.|++.++ .+..+|.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~-~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG-KWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC-eEEEEEEcCCCceEEEEcCEEEEe
Confidence 00000000 0 0001245678999999999999988 77 999999988655 688877542 24679999999
Q ss_pred cCCCCccc-ccccCceeee--------cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 243 SGAASGKL-LEYEEWSYIP--------VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 243 ~G~~s~~~-~~~~~~~~~p--------~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
+|.++... ..+.+..-++ ......+.+++|++||.+.+++|.+
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHH
Confidence 99765332 2221111111 1222345688999999998766543
No 72
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.52 E-value=2e-13 Score=136.95 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC-CCC---CC-------CcCcHHHHHhcCCc--hhhhhhcccceEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-PFT---NN-------YGVWEDEFRDLGLE--GCIEHVWRDTVVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~-~~~---~~-------~g~~~~~l~~~g~~--~~~~~~~~~~~~~~ 173 (375)
.|||+|||||+||++||+.+++.|.+|+|||++. ..+ ++ .|.+.+.++.+|-. .......... ..+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~-r~l 82 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQF-RML 82 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCce-eec
Confidence 5999999999999999999999999999999874 221 11 22233444444311 1111111011 111
Q ss_pred CCCCCeeecCCceeecHHHHHHHHHHHHHHC-CceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
+.........+.+.+|+..+...+.+.+.+. |++++.+.|+++..+++.+..|.+.+|..+.|+.||+|||.++
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 1111111122334789999999999988865 8998877899988776656778899998999999999999875
No 73
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.51 E-value=3.5e-13 Score=126.21 Aligned_cols=146 Identities=21% Similarity=0.202 Sum_probs=96.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
|||+|||||++|+++|..|++.|++|+|||+....+ .+... ..+. .++ +.+ ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~-~~~~-----------------~~~-------~~~-~~ 53 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGG-QLTTT-TEVE-----------------NYP-------GFP-EG 53 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCc-ceeec-cccc-----------------ccC-------CCC-CC
Confidence 699999999999999999999999999999875322 11000 0000 000 000 12
Q ss_pred ecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc------ee--e
Q 017240 188 VSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW------SY--I 259 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~------~~--~ 259 (375)
+...++...+.+.+++.|++++.++|++++.+++ .+.|++.++.++.+|.||+|+|..+..+ ...+. .. .
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~-~~~v~~~~~~~~~~d~liiAtG~~~~~~-~i~g~~~~~~~~~~~~ 131 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDR-PFKVKTGDGKEYTAKAVIIATGASARKL-GIPGEDEFLGRGVSYC 131 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCC-eeEEEeCCCCEEEeCEEEECCCCCcccC-CCCChhhcCCccEEEe
Confidence 3455788888898999999988788999987665 6778888778899999999999865332 11111 11 1
Q ss_pred ecCCCCCccCCCEEEEccCCCCC
Q 017240 260 PVGGSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 260 p~~~~~~~~~~~v~liGdaa~~~ 282 (375)
+........+++++++|.+..++
T Consensus 132 ~~~~~~~~~~~~v~ViG~G~~~~ 154 (300)
T TIGR01292 132 ATCDGPFFKNKEVAVVGGGDSAI 154 (300)
T ss_pred eecChhhcCCCEEEEECCChHHH
Confidence 11111123467899999876443
No 74
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.8e-13 Score=131.94 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCC--CCeee
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDED--EPILI 181 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~~ 181 (375)
.+.+||+|||||++|+++|++|.+.|.+ ++|+||+...+..|-. ...+. + ..+...+...- .+...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~--~ry~~--l-------~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY--NRYPG--L-------RLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh--ccCCc--e-------EECCchheeccCCCccCC
Confidence 4568999999999999999999999998 9999999876654311 00000 0 00000000000 00000
Q ss_pred cCCceeecHHHHHHHHHHHHHHCCce--EE-EEEEEEEEEcCC-ceEEEEecCCeE--EecCEEEEccCCCCcccccc--
Q 017240 182 GRAYGRVSRHLLHEELLRRCVESGVS--YL-SSKVESITESTS-GHRLVACEHDMI--VPCRLATVASGAASGKLLEY-- 253 (375)
Q Consensus 182 ~~~~~~v~~~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~-~~~~V~~~~g~~--i~a~~vI~A~G~~s~~~~~~-- 253 (375)
... .-+...+..++.+.+++.++. +. ++.|+.+..+++ ..++|++++|.+ +.+|.||+|||.++....+.
T Consensus 75 ~~~--~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~ 152 (443)
T COG2072 75 DEA--FAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA 152 (443)
T ss_pred ccc--CCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC
Confidence 011 111223666777777776644 33 555555555443 279999988754 56999999999876443321
Q ss_pred -----cCceeee--cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 254 -----EEWSYIP--VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 254 -----~~~~~~p--~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
....+.+ ......+.+++|++||.++++++.+
T Consensus 153 G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~ 191 (443)
T COG2072 153 GLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIA 191 (443)
T ss_pred CccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHH
Confidence 1112222 2233567899999999998766543
No 75
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.47 E-value=8.9e-13 Score=133.08 Aligned_cols=148 Identities=21% Similarity=0.303 Sum_probs=99.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
...|||+||||||+|+++|.+|++.|++|+||++. .+..+. + ..+++. ...
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~---~---~~~~~~-------------------~~~-- 259 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL---D---TMGIEN-------------------FIS-- 259 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee---c---cCcccc-------------------cCC--
Confidence 34699999999999999999999999999999764 111110 0 000000 000
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc----ccCcee
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE----YEEWSY 258 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~----~~~~~~ 258 (375)
+......++.+.|.+.+++.|++++ +++|+++...++ .+.|.+.+|.++.+|.||+|||+.+..+ .+ +....+
T Consensus 260 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~-~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v 338 (517)
T PRK15317 260 VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG-LIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGV 338 (517)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-eEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceE
Confidence 0124456789999999999999999 899999988655 6778888888899999999999866432 11 111111
Q ss_pred --eecCCCCCccCCCEEEEccCCCCC
Q 017240 259 --IPVGGSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 259 --~p~~~~~~~~~~~v~liGdaa~~~ 282 (375)
.+........++++++||.+..++
T Consensus 339 ~~~~~~~~~~~~gk~VvVVGgG~~g~ 364 (517)
T PRK15317 339 AYCPHCDGPLFKGKRVAVIGGGNSGV 364 (517)
T ss_pred EEeeccCchhcCCCEEEEECCCHHHH
Confidence 111111123467899999886443
No 76
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.47 E-value=6.5e-14 Score=148.97 Aligned_cols=189 Identities=16% Similarity=0.177 Sum_probs=114.8
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccC-CCCCCCCCCcccEEEECCCHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADK-LPPISIGNGILDLVVIGCGPAGLAL 122 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DVvIIGgG~aGl~a 122 (375)
-|+||++..|++ .|++. ++++.++..+.+................... .+..+ ....+|+|||||||||++
T Consensus 250 GrVCp~~~~CE~----~C~~~--~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~--~~gkkVaVIGsGPAGLsa 321 (944)
T PRK12779 250 GRVCPQELQCQG----VCTHT--KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAA--AVKPPIAVVGSGPSGLIN 321 (944)
T ss_pred cCcCCCccCHHH----hccCC--CcCcchhHHHHHHHHHHHhhchhhhhccccccccccc--CCCCeEEEECCCHHHHHH
Confidence 499999999998 89887 4588888777653321110000000000000 01111 235799999999999999
Q ss_pred HHHHHHCCCcEEEECCCCCCCC--CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHH
Q 017240 123 AAESAKLGLNVGLIGPDLPFTN--NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRR 200 (375)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~--~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~ 200 (375)
|+.|++.|++|+|||+....+. .||+. ...++ ..+.+...+.
T Consensus 322 A~~Lar~G~~VtVfE~~~~~GG~l~yGIP-----------------------------------~~rlp-~~vi~~~i~~ 365 (944)
T PRK12779 322 AYLLAVEGFPVTVFEAFHDLGGVLRYGIP-----------------------------------EFRLP-NQLIDDVVEK 365 (944)
T ss_pred HHHHHHCCCeEEEEeeCCCCCceEEccCC-----------------------------------CCcCh-HHHHHHHHHH
Confidence 9999999999999998764432 23321 01122 3455556677
Q ss_pred HHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---eeee-----------cCC--
Q 017240 201 CVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---SYIP-----------VGG-- 263 (375)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p-----------~~~-- 263 (375)
+++.||+++ ++.+- ..+++++.....+|.||+|+|++.+...+..+. .++. .+.
T Consensus 366 l~~~Gv~f~~n~~vG---------~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~ 436 (944)
T PRK12779 366 IKLLGGRFVKNFVVG---------KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDD 436 (944)
T ss_pred HHhhcCeEEEeEEec---------cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccc
Confidence 888999998 76552 235555554567999999999875444333211 1111 000
Q ss_pred ----CC-CccCCCEEEEccCCCCCCCC
Q 017240 264 ----SL-PNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 264 ----~~-~~~~~~v~liGdaa~~~~p~ 285 (375)
.. ...+++|++||++..++|.+
T Consensus 437 ~~~~~~~~~~Gk~VvVIGGG~tA~D~A 463 (944)
T PRK12779 437 DYETPLPEVKGKEVFVIGGGNTAMDAA 463 (944)
T ss_pred cccccccccCCCEEEEECCCHHHHHHH
Confidence 11 12468999999987665543
No 77
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.46 E-value=8.2e-13 Score=126.34 Aligned_cols=141 Identities=23% Similarity=0.233 Sum_probs=92.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC----CCCcC-----------------------cHHHHHhcCCchh
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT----NNYGV-----------------------WEDEFRDLGLEGC 161 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~----~~~g~-----------------------~~~~l~~~g~~~~ 161 (375)
||+|||||++|+++|++|++.|++|+|||++.... .+.|+ |.+..+..+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 89999999999999999999999999999984322 11111 1222222232111
Q ss_pred hh--------------h----------hcccceEEeCCC-------------CCeeecCCceeecHHHHHHHHHHHHHHC
Q 017240 162 IE--------------H----------VWRDTVVYIDED-------------EPILIGRAYGRVSRHLLHEELLRRCVES 204 (375)
Q Consensus 162 ~~--------------~----------~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~l~~~L~~~~~~~ 204 (375)
.. . ........++.. ....+.+..+.++...+.+.|.+.+++.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 00 0 000000000000 0011123335789999999999999999
Q ss_pred CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 205 GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 205 gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
|++++ +++|+++..++++...|.+.+|+ +.+|.||+|+|.++..+
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l 206 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQL 206 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHH
T ss_pred hhhccccccccchhhcccccccccccccc-cccceeEecccccceee
Confidence 99999 89999999988844449999996 99999999999988664
No 78
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.46 E-value=1e-12 Score=133.55 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
.|||+||||||||+++|..|++.|++|+|||++...+ .+-.. .. + ... +...
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG-~~~~~-~~-----i------------~~~---------pg~~ 55 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGG-QITIT-SE-----V------------VNY---------PGIL 55 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCc-eEEec-cc-----c------------ccC---------CCCc
Confidence 4999999999999999999999999999999864222 11000 00 0 000 0001
Q ss_pred eecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc------ee--
Q 017240 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW------SY-- 258 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~------~~-- 258 (375)
.+....+.+.+.+.+++.|++++++.|+.+..+++ .+.|.+.++ .+.++.||+|||+++..+ ++.+. .+
T Consensus 56 ~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~-~~~V~~~~g-~~~a~~lVlATGa~p~~~-~ipG~~~~~~~~v~~ 132 (555)
T TIGR03143 56 NTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPRKL-GFPGEEEFTGRGVAY 132 (555)
T ss_pred CCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCC-EEEEEecCC-EEEEeEEEECCCCccCCC-CCCCHHHhCCceEEE
Confidence 24456788888888888999988888988887654 567777666 689999999999876443 21111 11
Q ss_pred eecCCCCCccCCCEEEEccCCCCCC
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~ 283 (375)
..........++++++||++..+++
T Consensus 133 ~~~~~~~~~~g~~VvVIGgG~~g~E 157 (555)
T TIGR03143 133 CATCDGEFFTGMDVFVIGGGFAAAE 157 (555)
T ss_pred EeecChhhcCCCEEEEECCCHHHHH
Confidence 1111112235789999999865443
No 79
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.45 E-value=1.2e-12 Score=125.14 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=90.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEE-CCCCCCC---CC--C-----cCcHHHHHhcCCchhhhhhcccceE---EeC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLI-GPDLPFT---NN--Y-----GVWEDEFRDLGLEGCIEHVWRDTVV---YID 174 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~li-E~~~~~~---~~--~-----g~~~~~l~~~g~~~~~~~~~~~~~~---~~~ 174 (375)
||+|||||.||+.||+.+++.|.+|+|| ++....+ ++ . |....+++.+| ..+....+...+ .++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalg--g~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALG--GLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT---SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhh--hHHHHHHhHhhhhhhccc
Confidence 8999999999999999999999999999 3322222 11 1 11234445554 222222222222 122
Q ss_pred CCCCeeecCCceeecHHHHHHHHHHHHHH-CCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 175 EDEPILIGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
.........+...+|+..+.+.+.+.+++ .+++++.++|+++..+++.++.|.+.+|..+.+|.||+|||.+
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 11111112222479999999999999988 6899998899999988877889999999999999999999984
No 80
>PRK12831 putative oxidoreductase; Provisional
Probab=99.45 E-value=1.7e-13 Score=136.24 Aligned_cols=186 Identities=15% Similarity=0.156 Sum_probs=113.6
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|+.+..|+. .|++...++++.++..+.+-......... .. ..+......||+||||||||+++|
T Consensus 90 grvC~~~~~Ce~----~C~r~~~~~~v~I~~l~r~~~~~~~~~~~--------~~-~~~~~~~~~~V~IIG~GpAGl~aA 156 (464)
T PRK12831 90 GRVCPQESQCEG----KCVLGIKGEPVAIGKLERFVADWARENGI--------DL-SETEEKKGKKVAVIGSGPAGLTCA 156 (464)
T ss_pred hccCCCCCChHH----HhcCCCCCCCeehhHHHHHHHHHHHHcCC--------CC-CCCcCCCCCEEEEECcCHHHHHHH
Confidence 399999888987 99999888898888777654331111000 00 001113457999999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE 203 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~ 203 (375)
+.|++.|++|+|||+....+..+ .++++ ...++...+.....+.+++
T Consensus 157 ~~l~~~G~~V~v~e~~~~~GG~l--------~~gip-------------------------~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 157 GDLAKMGYDVTIFEALHEPGGVL--------VYGIP-------------------------EFRLPKETVVKKEIENIKK 203 (464)
T ss_pred HHHHhCCCeEEEEecCCCCCCee--------eecCC-------------------------CccCCccHHHHHHHHHHHH
Confidence 99999999999999875433111 00110 0012223355556677888
Q ss_pred CCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCcccccccC---ceeeec---------C-------
Q 017240 204 SGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKLLEYEE---WSYIPV---------G------- 262 (375)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~~~~~~---~~~~p~---------~------- 262 (375)
.|++++ ++.+.. .++..+. ..+.+|.||+|+|++.+...+..+ ..+++. .
T Consensus 204 ~gv~i~~~~~v~~---------~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (464)
T PRK12831 204 LGVKIETNVVVGK---------TVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEY 274 (464)
T ss_pred cCCEEEcCCEECC---------cCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccc
Confidence 999999 775521 1223332 246799999999985333323221 112110 0
Q ss_pred CCCCccCCCEEEEccCCCCCCC
Q 017240 263 GSLPNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 263 ~~~~~~~~~v~liGdaa~~~~p 284 (375)
......+++|++||++..+++.
T Consensus 275 ~~~~~~gk~VvVIGgG~va~d~ 296 (464)
T PRK12831 275 DTPIKVGKKVAVVGGGNVAMDA 296 (464)
T ss_pred cCcccCCCeEEEECCcHHHHHH
Confidence 0112457899999998655553
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.45 E-value=4.8e-13 Score=134.34 Aligned_cols=170 Identities=21% Similarity=0.185 Sum_probs=102.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEe----CCCCCeeecCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYI----DEDEPILIGRA 184 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 184 (375)
.|+|||||++||++|..|.+.|++|+++|+....+..|-.-.+. .-|. ...++...... .......+...
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~--~~g~----~~~y~sl~~n~sk~~~~fsdfp~p~~ 76 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENP--EDGR----SSVYDSLHTNTSKEMMAFSDFPFPED 76 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTC--CCSE----GGGSTT-B-SS-GGGSCCTTS-HCCC
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcC--CCCc----cccccceEEeeCchHhcCCCcCCCCC
Confidence 69999999999999999999999999999998776444210000 0000 01111110000 00000001111
Q ss_pred c-eeecHHHHHHHHHHHHHHCCce--EE-EEEEEEEEEcCC----ceEEEEecC-C--eEEecCEEEEccCCCCccccc-
Q 017240 185 Y-GRVSRHLLHEELLRRCVESGVS--YL-SSKVESITESTS----GHRLVACEH-D--MIVPCRLATVASGAASGKLLE- 252 (375)
Q Consensus 185 ~-~~v~~~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~----~~~~V~~~~-g--~~i~a~~vI~A~G~~s~~~~~- 252 (375)
+ -..++.++.++|...+++.++. |. +++|+++...++ +.|.|++.+ | ++-.+|.||+|+|.++....+
T Consensus 77 ~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 77 YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB--
T ss_pred CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence 1 1467889999999999998874 77 999999987643 368888754 4 345689999999988754433
Q ss_pred --ccCce-----eee---cCCCCCccCCCEEEEccCCCCCCC
Q 017240 253 --YEEWS-----YIP---VGGSLPNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 253 --~~~~~-----~~p---~~~~~~~~~~~v~liGdaa~~~~p 284 (375)
+.+.. ++. ...+..+.+++|++||.+++++|-
T Consensus 157 ~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DI 198 (531)
T PF00743_consen 157 PSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADI 198 (531)
T ss_dssp ---CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHH
T ss_pred hhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHH
Confidence 21111 111 123345678999999999766553
No 82
>PLN02661 Putative thiazole synthesis
Probab=99.44 E-value=6.1e-12 Score=118.49 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=116.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCcEEEECCCCCCCC-CCcC------------cHHHHHhcCCchhhhhhcccceE
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTN-NYGV------------WEDEFRDLGLEGCIEHVWRDTVV 171 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~-G~~V~liE~~~~~~~-~~g~------------~~~~l~~~g~~~~~~~~~~~~~~ 171 (375)
.++||+|||||++|+++|+.|++. |++|+|||+....+. .|.. ..+.++++|++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~------------ 158 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP------------ 158 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC------------
Confidence 358999999999999999999986 899999999765432 1110 11223333332
Q ss_pred EeCCCCCeeecCCcee-ecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEec------C--------CeEE
Q 017240 172 YIDEDEPILIGRAYGR-VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACE------H--------DMIV 234 (375)
Q Consensus 172 ~~~~~~~~~~~~~~~~-v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~------~--------g~~i 234 (375)
++.. ..|.. .+...+...|.+.+.+ .|++++ ++.|+++..+++...+|.+. + ...+
T Consensus 159 -fd~~------dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I 231 (357)
T PLN02661 159 -YDEQ------ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVM 231 (357)
T ss_pred -cccC------CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEE
Confidence 1110 01111 2445666777776654 789999 99999998876655555431 1 1368
Q ss_pred ecCEEEEccCCCCcccc----cccCcee---eecCCC-------------CCccCCCEEEEccCCCCCCCC--ChHHHHH
Q 017240 235 PCRLATVASGAASGKLL----EYEEWSY---IPVGGS-------------LPNTEQRNLAFGAAASMVHPA--TGYSVVR 292 (375)
Q Consensus 235 ~a~~vI~A~G~~s~~~~----~~~~~~~---~p~~~~-------------~~~~~~~v~liGdaa~~~~p~--~G~Gi~~ 292 (375)
.|+.||+|||...+.-. ...+..+ +|--.+ .....+++++.|-++..++-. -|=-+..
T Consensus 232 ~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~ 311 (357)
T PLN02661 232 EAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGA 311 (357)
T ss_pred ECCEEEEcCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHh
Confidence 99999999996553210 0000101 120000 123356889999887777633 3433556
Q ss_pred HHhhHHHHHHHHHHHHhc
Q 017240 293 SLSEAPNYASAIAYILKH 310 (375)
Q Consensus 293 al~~a~~~a~~i~~~l~~ 310 (375)
.+.+++.+|+.|.+.|+.
T Consensus 312 m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 312 MMISGQKAAHLALKALGL 329 (357)
T ss_pred HHhhhHHHHHHHHHHHcc
Confidence 688999999999998863
No 83
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.42 E-value=2.1e-12 Score=130.27 Aligned_cols=148 Identities=21% Similarity=0.267 Sum_probs=98.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
...|||+||||||||+++|..|++.|++|+|||.. .+..+ .+ ..++.. ....+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~---~~---~~~~~~-------------------~~~~~ 262 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQV---KD---TVGIEN-------------------LISVP 262 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCcc---cc---CcCccc-------------------ccccC
Confidence 34699999999999999999999999999999753 11111 00 000000 00000
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc------e
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW------S 257 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~------~ 257 (375)
.....++.+.+.+.+++.|++++ +++|+++..+++ .+.|++.+|.++.+|.+|+|+|+....+ ...+. .
T Consensus 263 --~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~-~~~v~~~~g~~i~~d~lIlAtGa~~~~~-~ipG~~~~~~~~ 338 (515)
T TIGR03140 263 --YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG-LIVVTLESGEVLKAKSVIVATGARWRKL-GVPGEKEYIGKG 338 (515)
T ss_pred --CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC-eEEEEECCCCEEEeCEEEECCCCCcCCC-CCCCHHHcCCCe
Confidence 13456788888888888999999 899999987655 5778888887899999999999875322 21111 1
Q ss_pred e--eecCCCCCccCCCEEEEccCCCCCC
Q 017240 258 Y--IPVGGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 258 ~--~p~~~~~~~~~~~v~liGdaa~~~~ 283 (375)
+ .+........++++++||.+..+++
T Consensus 339 v~~~~~~~~~~~~~k~VvViGgG~~g~E 366 (515)
T TIGR03140 339 VAYCPHCDGPFFKGKDVAVIGGGNSGIE 366 (515)
T ss_pred EEEeeccChhhcCCCEEEEECCcHHHHH
Confidence 1 1100111134679999998865544
No 84
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.39 E-value=5.4e-12 Score=126.55 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=96.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC-C----------CCCcCcHHHHHhcCC--chhhhhhcccceEEeC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-T----------NNYGVWEDEFRDLGL--EGCIEHVWRDTVVYID 174 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~-~----------~~~g~~~~~l~~~g~--~~~~~~~~~~~~~~~~ 174 (375)
|||+|||||++|+.+|..+++.|.+|+|||+.... + ...|.|.+.++.+|- .....+..........
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999986321 1 123444555555541 1111111111111111
Q ss_pred CCCCeeecCCceeecHHHHHHHHHHHHHHC-CceEEEEEEEEEEEc-CCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 175 EDEPILIGRAYGRVSRHLLHEELLRRCVES-GVSYLSSKVESITES-TSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~-~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
...+.. ..+.+.+|+..+...+.+.+++. |++++...|+++..+ ++.++.|.+.+|..+.|+.||+|+|.+.
T Consensus 81 skgpAV-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAV-RATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcc-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 111211 22335789999999999999886 788887778888655 4447788998888899999999999985
No 85
>PRK10262 thioredoxin reductase; Provisional
Probab=99.38 E-value=1e-11 Score=117.94 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=93.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
..+||+||||||||+++|..|++.|++|++||+....+.....+ . .+.+ + . ..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~-~-----------~~~~-------~-------~-~~ 57 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT-E-----------VENW-------P-------G-DP 57 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCc-e-----------ECCC-------C-------C-CC
Confidence 45899999999999999999999999999999543222110000 0 0000 0 0 00
Q ss_pred eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc------eee
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW------SYI 259 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~------~~~ 259 (375)
..++...+.+.+.+.+...++++....|+.++..++ .+.++..++ .+.+|.||+|+|++...+ ++.+. .+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~v~~~~~-~~~~d~vilAtG~~~~~~-~i~g~~~~~~~~v~ 134 (321)
T PRK10262 58 NDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNR-PFRLTGDSG-EYTCDALIIATGASARYL-GLPSEEAFKGRGVS 134 (321)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCC-eEEEEecCC-EEEECEEEECCCCCCCCC-CCCCHHHcCCCcEE
Confidence 124556778888888888888877556777776655 566665544 789999999999875432 22111 111
Q ss_pred --ecCCCCCccCCCEEEEccCCCCCC
Q 017240 260 --PVGGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 260 --p~~~~~~~~~~~v~liGdaa~~~~ 283 (375)
.........+++++++|++..+++
T Consensus 135 ~~~~~~~~~~~g~~vvVvGgG~~g~e 160 (321)
T PRK10262 135 ACATCDGFFYRNQKVAVIGGGNTAVE 160 (321)
T ss_pred EeecCCHHHcCCCEEEEECCCHHHHH
Confidence 111112245789999998854433
No 86
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.38 E-value=7.3e-12 Score=124.73 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=53.3
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...|.+.+++.|++|+ ++.|++++.. + .+.|++.+| ++.||.||+|+|+++..+
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~-~~~v~t~~g-~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG-Q-PAVVRTPDG-QVTADKVVLALNAWMASH 240 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC-C-ceEEEeCCc-EEECCEEEEccccccccc
Confidence 578999999999999999999999 9999999753 3 467888877 699999999999987543
No 87
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.38 E-value=6.8e-12 Score=121.56 Aligned_cols=142 Identities=24% Similarity=0.269 Sum_probs=93.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---C----------CCc--------------CcHHHHHhcCCc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---N----------NYG--------------VWEDEFRDLGLE 159 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~----------~~g--------------~~~~~l~~~g~~ 159 (375)
.+||+|||||++|+++|++|++.|.+|+|||++.... . .++ +|.+..+..+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 4899999999999999999999999999999875421 0 111 022211112211
Q ss_pred hh---------------hhhhcc-----c-ceEEeCC--------------CCCeeecCCceeecHHHHHHHHHHHHHHC
Q 017240 160 GC---------------IEHVWR-----D-TVVYIDE--------------DEPILIGRAYGRVSRHLLHEELLRRCVES 204 (375)
Q Consensus 160 ~~---------------~~~~~~-----~-~~~~~~~--------------~~~~~~~~~~~~v~~~~l~~~L~~~~~~~ 204 (375)
.. ...... . ....++. .....+.+..+.+++..+...+.+.+.+.
T Consensus 83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~ 162 (376)
T PRK11259 83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAREA 162 (376)
T ss_pred cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHHC
Confidence 00 000000 0 0001110 00011122235788889999999999889
Q ss_pred CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 205 GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 205 gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
|++++ +++|+++..+++ .+.|++++| ++.+|.||+|+|.++..+
T Consensus 163 gv~i~~~~~v~~i~~~~~-~~~v~~~~g-~~~a~~vV~A~G~~~~~l 207 (376)
T PRK11259 163 GAELLFNEPVTAIEADGD-GVTVTTADG-TYEAKKLVVSAGAWVKDL 207 (376)
T ss_pred CCEEECCCEEEEEEeeCC-eEEEEeCCC-EEEeeEEEEecCcchhhh
Confidence 99999 999999988666 677888887 799999999999987654
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.38 E-value=4.7e-12 Score=123.76 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=107.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCC------CCCee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDE------DEPIL 180 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 180 (375)
..+|+|||||||||++|..|.+.|++|+++||...++..|...+.. . ......++.....++. +.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~----~--~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENV----E--VVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcc----c--ccccchhhhhhccCChhhhcCCCCCCc
Confidence 3699999999999999999999999999999998776444221000 0 0000001111110000 00000
Q ss_pred ecCCceeecHHHHHHHHHHHHHHCCc--eEE-EEEEEEEEEcCCceEEEEecCC----eEEecCEEEEccCCCC-ccccc
Q 017240 181 IGRAYGRVSRHLLHEELLRRCVESGV--SYL-SSKVESITESTSGHRLVACEHD----MIVPCRLATVASGAAS-GKLLE 252 (375)
Q Consensus 181 ~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~-~~~v~~i~~~~~~~~~V~~~~g----~~i~a~~vI~A~G~~s-~~~~~ 252 (375)
...+--..+..++.++|...|++.++ .|. +++|..+....++.|.|.+.++ ++.-+|.||+|+|.+. +....
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 00011124566999999999999886 466 8888888877633788887654 4678999999999884 22222
Q ss_pred ccCce--eee--------cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 253 YEEWS--YIP--------VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 253 ~~~~~--~~p--------~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
..... .++ ......+.+++|++||-+++++|.+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs 202 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDIS 202 (448)
T ss_pred CCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHH
Confidence 11111 111 1222346688999999998776654
No 89
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.38 E-value=7e-12 Score=124.98 Aligned_cols=169 Identities=19% Similarity=0.209 Sum_probs=91.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcH-HHHHhcCCchhhhhhcccceEEeCCCCCee
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE-DEFRDLGLEGCIEHVWRDTVVYIDEDEPIL 180 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
+..|||+||||||+|+++|+.|++.|++|+|||+....+. ++|+.+ ..+..... ....+.....+.......
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~---~~~~~~~~~~~~~~~~~~- 78 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVL---RLIGFNQNPLYSSYRVKL- 78 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHH---HHHHHhhhhhhcccCCcC-
Confidence 3469999999999999999999999999999998754442 333322 11111000 000000000000000000
Q ss_pred ecCCce-eecH-----HHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCe--EEecCEEEEccCCCCcccc-
Q 017240 181 IGRAYG-RVSR-----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAASGKLL- 251 (375)
Q Consensus 181 ~~~~~~-~v~~-----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~--~i~a~~vI~A~G~~s~~~~- 251 (375)
...+. .+.+ ..+.+.+.+.+.+.|++++...+..+.. + .+.|...+|. ++.+|.||+|||+.+..+.
T Consensus 79 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 79 -RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--H-TVEVECPDGEVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--C-EEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 00000 0000 1233445566677899999555655532 2 5677776663 7999999999997654331
Q ss_pred -cccCceeeecC--CCCCccCCCEEEEccCCCC
Q 017240 252 -EYEEWSYIPVG--GSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 252 -~~~~~~~~p~~--~~~~~~~~~v~liGdaa~~ 281 (375)
+.....++... ......++++++||.+..+
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g 187 (461)
T PRK05249 155 VDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIG 187 (461)
T ss_pred CCCCCCeEEcHHHhhchhhcCCeEEEECCCHHH
Confidence 11111121111 1122346899999988543
No 90
>PRK06116 glutathione reductase; Validated
Probab=99.36 E-value=2.7e-12 Score=127.50 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=87.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHH-HHhc-CCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-FRDL-GLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~-l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
+|||+||||||+|+++|+.|++.|++|+|||+....+ .+.|+.+.. +... .+.................. ...+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcCHH
Confidence 5999999999999999999999999999999864333 244553321 1110 00000000000000000000 00000
Q ss_pred CCceeec--HHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCce-ee
Q 017240 183 RAYGRVS--RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEWS-YI 259 (375)
Q Consensus 183 ~~~~~v~--~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~~-~~ 259 (375)
.-....+ -..+.+.+.+.+.+.||+++...++.++. . +|++ +|.++.+|.||+|||+.+..+ +..+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~---~v~~-~g~~~~~d~lViATGs~p~~p-~i~g~~~~~ 155 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--H---TVEV-NGERYTADHILIATGGRPSIP-DIPGAEYGI 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--C---EEEE-CCEEEEeCEEEEecCCCCCCC-CCCCcceeE
Confidence 0000000 01233344555667899999555665532 2 4555 667899999999999765332 121111 11
Q ss_pred ecC--CCCCccCCCEEEEccCCC
Q 017240 260 PVG--GSLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 260 p~~--~~~~~~~~~v~liGdaa~ 280 (375)
... ......++++++||.+..
T Consensus 156 ~~~~~~~~~~~~~~vvViGgG~~ 178 (450)
T PRK06116 156 TSDGFFALEELPKRVAVVGAGYI 178 (450)
T ss_pred chhHhhCccccCCeEEEECCCHH
Confidence 111 112234679999997743
No 91
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.36 E-value=1.9e-11 Score=119.33 Aligned_cols=141 Identities=19% Similarity=0.190 Sum_probs=93.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCC-----CCCcC-----------------------cHHHHHhcC
Q 017240 108 LDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT-----NNYGV-----------------------WEDEFRDLG 157 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~-----~~~g~-----------------------~~~~l~~~g 157 (375)
+||+|||||++|+++|++|+++ |++|+|||+....+ .+.|+ |.+..++++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 82 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG 82 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999 99999999975221 11121 112222222
Q ss_pred Cchhh----------------hh---h---cccceEEeCCC-----------CCeeecCCceeecHHHHHHHHHHHHHHC
Q 017240 158 LEGCI----------------EH---V---WRDTVVYIDED-----------EPILIGRAYGRVSRHLLHEELLRRCVES 204 (375)
Q Consensus 158 ~~~~~----------------~~---~---~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~l~~~L~~~~~~~ 204 (375)
++... .. . .......++.. ....+.+..+.++...+.+.|.+.+++.
T Consensus 83 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~~ 162 (393)
T PRK11728 83 IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQAR 162 (393)
T ss_pred CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHhC
Confidence 11000 00 0 00000011100 0011122335788999999999999999
Q ss_pred CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 205 GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 205 gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
|++++ +++|+++...++ .+.|.+.+| ++.+|.||+|+|.++..+
T Consensus 163 Gv~i~~~~~V~~i~~~~~-~~~V~~~~g-~i~ad~vV~A~G~~s~~l 207 (393)
T PRK11728 163 GGEIRLGAEVTALDEHAN-GVVVRTTQG-EYEARTLINCAGLMSDRL 207 (393)
T ss_pred CCEEEcCCEEEEEEecCC-eEEEEECCC-EEEeCEEEECCCcchHHH
Confidence 99999 999999987665 567888777 799999999999988544
No 92
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.36 E-value=7.4e-12 Score=124.23 Aligned_cols=167 Identities=17% Similarity=0.119 Sum_probs=89.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHH-HHh-cCCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-FRD-LGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~-l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
+|||+||||||+|+++|+.+++.|++|+|||++...+ .+.|+.+.. +-. ..+...+.+ ........... ...+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~-~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGKA-RFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCCC-CcCHH
Confidence 4999999999999999999999999999999864333 234553321 110 000000000 00000000000 00000
Q ss_pred CCceeec--HHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCcee-e
Q 017240 183 RAYGRVS--RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEWSY-I 259 (375)
Q Consensus 183 ~~~~~v~--~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~~~-~ 259 (375)
.-....+ -..+.+.+.+.+++.|++++..++..++.+ .+.|. .+|.++.+|.||+|||+.+..+ +..+... +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~---~v~v~-~~g~~~~~d~lIiATGs~p~~p-~i~G~~~~~ 154 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN---TVEVL-QDGTTYTAKKILIAVGGRPQKP-NLPGHELGI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC---EEEEe-cCCeEEEcCEEEEecCCcCCCC-CCCCcccee
Confidence 0000000 123445566667778999996677766533 34443 4567899999999999775332 1111110 1
Q ss_pred ec--CCCCCccCCCEEEEccCCC
Q 017240 260 PV--GGSLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 260 p~--~~~~~~~~~~v~liGdaa~ 280 (375)
.. ...++..++++++||.+..
T Consensus 155 ~~~~~~~l~~~~~~vvVIGgG~~ 177 (446)
T TIGR01424 155 TSNEAFHLPTLPKSILILGGGYI 177 (446)
T ss_pred chHHhhcccccCCeEEEECCcHH
Confidence 10 1112334678999998743
No 93
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.35 E-value=1.5e-12 Score=139.68 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=114.9
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+||.+..|+. .|++...++++.++..+++-......... ..+..+ .+..+|+|||||||||++|
T Consensus 381 grvCp~~~~Ce~----~C~~~~~~~pv~I~~ler~~~d~~~~~~~--------~~~~~~--~~~~kVaIIG~GPAGLsaA 446 (1006)
T PRK12775 381 GRVCPQETQCEA----QCIIAKKHESVGIGRLERFVGDNARAKPV--------KPPRFS--KKLGKVAICGSGPAGLAAA 446 (1006)
T ss_pred cCcCCCCCCHHH----hCcCCCCCCCeeecHHHHHHHHHHHHcCC--------CCCCCC--CCCCEEEEECCCHHHHHHH
Confidence 499999999997 99999888999999888764321110000 011111 2357999999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCC--CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTN--NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~--~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
..|++.|++|+|||+....+. .+|+ +...+ ..++.....+.+
T Consensus 447 ~~La~~G~~VtV~E~~~~~GG~l~~gi-----------------------------------p~~rl-~~e~~~~~~~~l 490 (1006)
T PRK12775 447 ADLVKYGVDVTVYEALHVVGGVLQYGI-----------------------------------PSFRL-PRDIIDREVQRL 490 (1006)
T ss_pred HHHHHcCCcEEEEecCCCCcceeeccC-----------------------------------CccCC-CHHHHHHHHHHH
Confidence 999999999999998754331 1221 00011 234666677778
Q ss_pred HHCCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCcccccccCc---eeeec---------------
Q 017240 202 VESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKLLEYEEW---SYIPV--------------- 261 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p~--------------- 261 (375)
++.||+++ ++.+ +. .++..+- ....+|.||+|+|++.+...++.+. .++..
T Consensus 491 ~~~Gv~~~~~~~v-g~--------~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~ 561 (1006)
T PRK12775 491 VDIGVKIETNKVI-GK--------TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKF 561 (1006)
T ss_pred HHCCCEEEeCCcc-CC--------ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCcccc
Confidence 88999998 6543 11 1221111 1246899999999865444333221 11110
Q ss_pred --CCCCCccCCCEEEEccCCCCCCC
Q 017240 262 --GGSLPNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 262 --~~~~~~~~~~v~liGdaa~~~~p 284 (375)
.......+++|++||++..++|.
T Consensus 562 ~~~~~~~~~Gk~VvVIGgG~tA~D~ 586 (1006)
T PRK12775 562 PFLDTPISLGKSVVVIGAGNTAMDC 586 (1006)
T ss_pred ccccCCccCCCEEEEECCcHHHHHH
Confidence 00112357899999999766664
No 94
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.35 E-value=1.1e-11 Score=120.20 Aligned_cols=64 Identities=19% Similarity=0.111 Sum_probs=54.4
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
.+.+++..+.+.|.+.+++.|++++ +++|+++..+++ .+.|.+.++ ++.+|.||+|+|.++..+
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~-~~~v~~~~~-~i~a~~vV~aaG~~~~~l 203 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTEL-LVTVKTTKG-SYQANKLVVTAGAWTSKL 203 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC-eEEEEeCCC-EEEeCEEEEecCcchHHH
Confidence 3578899999999999999999999 999999987765 567877776 799999999999886544
No 95
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=119.22 Aligned_cols=146 Identities=24% Similarity=0.312 Sum_probs=100.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCC-----CCCcC-----------------------cHHHHHhc
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFT-----NNYGV-----------------------WEDEFRDL 156 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~-----~~~g~-----------------------~~~~l~~~ 156 (375)
.+||+|||||+.|+++|++|++.+ ++|+||||....+ +|-|+ |.+..+++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999998 9999999976543 11111 22222333
Q ss_pred CCchhh----------------hhhcc----cc---eEEeCCC-----CC--------eeecCCceeecHHHHHHHHHHH
Q 017240 157 GLEGCI----------------EHVWR----DT---VVYIDED-----EP--------ILIGRAYGRVSRHLLHEELLRR 200 (375)
Q Consensus 157 g~~~~~----------------~~~~~----~~---~~~~~~~-----~~--------~~~~~~~~~v~~~~l~~~L~~~ 200 (375)
+++... ...+. .. ...++.. +| ..+.+..+.++...+...|.+.
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 321100 00000 00 0111110 11 1122334578999999999999
Q ss_pred HHHCCceEE-EEEEEEEEEcCCceEEEEecCCeE-EecCEEEEccCCCCccccc
Q 017240 201 CVESGVSYL-SSKVESITESTSGHRLVACEHDMI-VPCRLATVASGAASGKLLE 252 (375)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~-i~a~~vI~A~G~~s~~~~~ 252 (375)
+.+.|++++ +++|++|...+++++.+.+.+|++ ++|+.||.|.|.++..+.+
T Consensus 163 a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~ 216 (429)
T COG0579 163 AQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQ 216 (429)
T ss_pred HHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHH
Confidence 999999999 999999999887667778888865 9999999999998876643
No 96
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.34 E-value=1.5e-11 Score=122.67 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=88.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHHHhc-CCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEFRDL-GLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
.|||+||||||+|+++|..|++.|++|+|||+....+ .++|+.+ +.+... ..-..... ........... ...+.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAENV-GIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCCC-ccCHH
Confidence 5999999999999999999999999999999876322 1334422 111110 00000000 00000000000 00000
Q ss_pred CCceeec--HHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecC-CeEEecCEEEEccCCCCcccccc--cCce
Q 017240 183 RAYGRVS--RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASGKLLEY--EEWS 257 (375)
Q Consensus 183 ~~~~~v~--~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~-g~~i~a~~vI~A~G~~s~~~~~~--~~~~ 257 (375)
.-....+ ...+...+...+++.||+++...++.++. . .+.|...+ +.++.+|.||+|||+.+..+... ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~-~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~ 158 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDP--N-TVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRV 158 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--C-EEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCe
Confidence 0000000 01122335556667899999555655532 2 45565433 36899999999999876433221 1111
Q ss_pred eeecC--CCCCccCCCEEEEccCCCC
Q 017240 258 YIPVG--GSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 258 ~~p~~--~~~~~~~~~v~liGdaa~~ 281 (375)
++... ......++++++||++..+
T Consensus 159 v~~~~~~~~~~~~~~~vvVvGgG~~g 184 (462)
T PRK06416 159 IWTSDEALNLDEVPKSLVVIGGGYIG 184 (462)
T ss_pred EEcchHhhCccccCCeEEEECCCHHH
Confidence 21111 1122346789999977533
No 97
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.34 E-value=2e-11 Score=122.04 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=91.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHH-HHHhc-CCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED-EFRDL-GLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~-~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
.|||+||||||+|+++|..|++.|.+|+|||+....+ .++|+.+. .+-.. ..-....+ .....+... .. .
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~--~~---~ 77 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKK-ASPFGISVS--GP---A 77 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHH-HHhcCccCC--CC---c
Confidence 5999999999999999999999999999999874333 24454332 11110 00000000 000000000 00 0
Q ss_pred CCce-ee-cHHH----HHHHHHHHHHHCCceEEEEEEEEEEEc----CCceEEEEecCC--eEEecCEEEEccCCCCccc
Q 017240 183 RAYG-RV-SRHL----LHEELLRRCVESGVSYLSSKVESITES----TSGHRLVACEHD--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 183 ~~~~-~v-~~~~----l~~~L~~~~~~~gv~i~~~~v~~i~~~----~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~ 250 (375)
..+. .+ .... +.....+.+++.||+++...++.++.+ +++.+.|.+.+| .++.+|.||+|||+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 0110 00 0112 233334455667999996677777544 122567777776 5799999999999876432
Q ss_pred ccc--cCceeeecC--CCCCccCCCEEEEccCC
Q 017240 251 LEY--EEWSYIPVG--GSLPNTEQRNLAFGAAA 279 (375)
Q Consensus 251 ~~~--~~~~~~p~~--~~~~~~~~~v~liGdaa 279 (375)
... ....++... ..+...++++++||.+.
T Consensus 158 p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ 190 (472)
T PRK05976 158 PGLPFDGEYVISSDEALSLETLPKSLVIVGGGV 190 (472)
T ss_pred CCCCCCCceEEcchHhhCccccCCEEEEECCCH
Confidence 111 111111111 11223467999999875
No 98
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.34 E-value=1.5e-11 Score=122.73 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=90.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcH-HHHHh-cCCchhhhhhcccceEEeCCCCCeee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE-DEFRD-LGLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~-~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
.|||+||||||+|+++|..|++.|++|+|||+...++ .++|+.+ ..+-. ..+-...... ....+.....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~-~~~g~~~~~~----- 77 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL-AEHGIVFGEP----- 77 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhh-hhcCcccCCC-----
Confidence 4999999999999999999999999999999875444 2344432 11111 0000000000 0000000000
Q ss_pred cCCceee-c-HH----HHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCccc--c
Q 017240 182 GRAYGRV-S-RH----LLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKL--L 251 (375)
Q Consensus 182 ~~~~~~v-~-~~----~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~--~ 251 (375)
...+..+ . .. .+...+.+.+++.||+++...+..++ .+ .+.|...+| .++.+|.||+|||+.+..+ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~-~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~ 154 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GN-TLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFI 154 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEecCCCceEEEEcCEEEEeCCCCCCCCCCC
Confidence 0001100 0 11 12233344556689999955555443 22 566766666 4799999999999876422 1
Q ss_pred cccCceeeec--CCCCCccCCCEEEEccCCCCC
Q 017240 252 EYEEWSYIPV--GGSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 252 ~~~~~~~~p~--~~~~~~~~~~v~liGdaa~~~ 282 (375)
+.....++.. ...+...++++++||.+..++
T Consensus 155 ~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~ 187 (471)
T PRK06467 155 PHDDPRIWDSTDALELKEVPKRLLVMGGGIIGL 187 (471)
T ss_pred CCCCCcEEChHHhhccccCCCeEEEECCCHHHH
Confidence 1111112211 111223467999999986544
No 99
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.33 E-value=2.9e-11 Score=118.20 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=113.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||+|+.|+.+|..|++.|.+|+|||+.......
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------------------ 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------------------
Confidence 47999999999999999999999999999987432110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-c---cccCceeeecC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-L---EYEEWSYIPVG 262 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~---~~~~~~~~p~~ 262 (375)
.....+.+.+.+.+++.||+++ ++.|+++.. ++ .+.|++.+|+++.+|.||+|+|..+... . .+.....+.++
T Consensus 183 ~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~-~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~gi~vd 260 (396)
T PRK09754 183 NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GE-KVELTLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVID 260 (396)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CC-EEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcCCCEEEC
Confidence 1122456677788888999999 999999876 33 4667788888899999999999876432 1 11111224444
Q ss_pred CCCCccCCCEEEEccCCCCCCCCChHH-----HHHHHhhHHHHHHHHH
Q 017240 263 GSLPNTEQRNLAFGAAASMVHPATGYS-----VVRSLSEAPNYASAIA 305 (375)
Q Consensus 263 ~~~~~~~~~v~liGdaa~~~~p~~G~G-----i~~al~~a~~~a~~i~ 305 (375)
..+....++|+++||.+...++ +|.- ...|..+|..+|+.|.
T Consensus 261 ~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 261 EACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred CCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 4555556899999999987777 6642 3678899999888885
No 100
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.33 E-value=5.5e-12 Score=133.02 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=109.2
Q ss_pred ccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHHH
Q 017240 45 YKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAA 124 (375)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~ 124 (375)
|+|+. .|.. .|.....++++.+.+.+++......... .... ..+. ...+..+|+||||||||+++|+
T Consensus 490 rVCph--~Ce~----~C~R~~~d~pV~I~~Lkr~a~d~~~~~~---~~~~--~~~~--~~~tgKkVaIIGgGPAGLsAA~ 556 (1019)
T PRK09853 490 HICDH--QCQY----NCTRLDYDEAVNIRELKKVALEKGWDEY---KQRW--HKPA--GIGSRKKVAVIGAGPAGLAAAY 556 (1019)
T ss_pred CcCCc--hhHH----HhcCCCCCCCeeccHHHHHHHhhHHHhc---cccc--CCCC--ccCCCCcEEEECCCHHHHHHHH
Confidence 78887 5776 9999988899999888775432111000 0000 0010 0123579999999999999999
Q ss_pred HHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHHC
Q 017240 125 ESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVES 204 (375)
Q Consensus 125 ~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~ 204 (375)
.|++.|++|+|||+....+ |.... ++ +...++. ++.....+.+.+.
T Consensus 557 ~Lar~G~~VtV~Ek~~~~G---G~lr~-----~I-------------------------P~~Rlp~-evL~~die~l~~~ 602 (1019)
T PRK09853 557 FLARAGHPVTVFEREENAG---GVVKN-----II-------------------------PQFRIPA-ELIQHDIEFVKAH 602 (1019)
T ss_pred HHHHcCCeEEEEecccccC---cceee-----ec-------------------------ccccccH-HHHHHHHHHHHHc
Confidence 9999999999999875433 11100 00 0001222 3344445677778
Q ss_pred CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc--eeee-------c--CCCCCccCCCE
Q 017240 205 GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW--SYIP-------V--GGSLPNTEQRN 272 (375)
Q Consensus 205 gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~--~~~p-------~--~~~~~~~~~~v 272 (375)
||+++ ++.+ ++. .++.....+|.||+|+|++.+......+. .++. . .......+++|
T Consensus 603 GVe~~~gt~V-di~----------le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrV 671 (1019)
T PRK09853 603 GVKFEFGCSP-DLT----------VEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHV 671 (1019)
T ss_pred CCEEEeCcee-EEE----------hhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEE
Confidence 99998 7766 222 12223456899999999886543332211 1111 0 01112347899
Q ss_pred EEEccCCCCCCC
Q 017240 273 LAFGAAASMVHP 284 (375)
Q Consensus 273 ~liGdaa~~~~p 284 (375)
++||++..+++.
T Consensus 672 VVIGGGnVAmD~ 683 (1019)
T PRK09853 672 VVVGGGNTAMDA 683 (1019)
T ss_pred EEECCChHHHHH
Confidence 999988755554
No 101
>PRK06116 glutathione reductase; Validated
Probab=99.32 E-value=7.8e-11 Score=117.11 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=112.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|++|+.+|..|++.|.+|+++++.......
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------------------------------ 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------------------------------
Confidence 47999999999999999999999999999976432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
. ...+.+.+.+.+++.|++++ ++.|+++..++++.+.|++.+|+++.+|.||+|+|..+... +. ..+...
T Consensus 206 ~-~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~ 284 (450)
T PRK06116 206 F-DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGY 284 (450)
T ss_pred c-CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCc
Confidence 1 12456677788888999999 99999998765534667777888899999999999765443 11 122334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+..... ...|..+|..+|+.|.
T Consensus 285 i~vd~~~~Ts~~~IyA~GD~~~~~~~-----~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 285 IIVDEYQNTNVPGIYAVGDVTGRVEL-----TPVAIAAGRRLSERLF 326 (450)
T ss_pred EecCCCCCcCCCCEEEEeecCCCcCc-----HHHHHHHHHHHHHHHh
Confidence 55555555556899999999865433 2688899999888875
No 102
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.32 E-value=9.1e-11 Score=117.18 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=72.7
Q ss_pred HHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-----C-------C--eEEecCEEEEccCCCCcc--ccc-----cc
Q 017240 197 LLRRCVESGVSYL-SSKVESITESTSGHRLVACE-----H-------D--MIVPCRLATVASGAASGK--LLE-----YE 254 (375)
Q Consensus 197 L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-----~-------g--~~i~a~~vI~A~G~~s~~--~~~-----~~ 254 (375)
..+.+.+.||+++ ++.++++..+++....|++. + | .++.+|.||+|.|..+.. +.. ..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~ 414 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELD 414 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccC
Confidence 3455667899999 99999887544433334321 2 2 579999999999966532 211 12
Q ss_pred CceeeecC-CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 255 EWSYIPVG-GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 255 ~~~~~p~~-~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.+..+.+. ..+....++|+++||..... ..+..|+.+|..+|..|.++|.+.
T Consensus 415 ~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~-----~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 415 ERGRVAAPDNAYQTSNPKVFAAGDMRRGQ-----SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCEEeCCCcccCCCCCEEEccccCCCc-----hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 23333332 23344567899999998632 135789999999999999999753
No 103
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.32 E-value=6.2e-12 Score=124.82 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=86.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHH-HH-hcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-FR-DLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~-l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
+|||+||||||+|+++|+.|++.|++|+|||+....+ .++|+.+.. +- ...+.....+ .....+...... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~----~ 76 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQNLEN----T 76 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccCCcC----c
Confidence 4999999999999999999999999999999875433 234553321 11 0000000000 000000000000 0
Q ss_pred CCceee--cH----HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccC
Q 017240 183 RAYGRV--SR----HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEE 255 (375)
Q Consensus 183 ~~~~~v--~~----~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~ 255 (375)
..+..+ .. ..+.+.+...+.+.||+++ ++.+ .. +++ +|+. ++.++.+|.||+|||+.+..+....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~--~~~---~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g 149 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-FT--KDG---TVEV-NGRDYTAPHILIATGGKPSFPENIPG 149 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCC---EEEE-CCEEEEeCEEEEecCCCCCCCCCCCC
Confidence 001100 01 1233445566677899998 5543 22 222 3433 45679999999999987643312221
Q ss_pred cee-eecC--CCCCccCCCEEEEccCCCCC
Q 017240 256 WSY-IPVG--GSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 256 ~~~-~p~~--~~~~~~~~~v~liGdaa~~~ 282 (375)
... +... ..+...++++++||++..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~ 179 (450)
T TIGR01421 150 AELGTDSDGFFALEELPKRVVIVGAGYIAV 179 (450)
T ss_pred CceeEcHHHhhCccccCCeEEEECCCHHHH
Confidence 111 1100 11223468999999885433
No 104
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.32 E-value=1.6e-11 Score=122.42 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=56.1
Q ss_pred eeecHHHHHHHHHHHHHH----CC--ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVE----SG--VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~----~g--v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
+.++...+...|.+.+++ .| ++++ +++|+++...+++.+.|++.+| ++.||.||+|+|+++..+.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La 277 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFA 277 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHH
Confidence 478999999999999998 77 7888 9999999987554788888888 7999999999999987653
No 105
>PRK14694 putative mercuric reductase; Provisional
Probab=99.31 E-value=2.8e-11 Score=120.87 Aligned_cols=161 Identities=24% Similarity=0.268 Sum_probs=88.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHHHhcCCchhhhhhcccceE--EeCCCCCe
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEFRDLGLEGCIEHVWRDTVV--YIDEDEPI 179 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~ 179 (375)
...|||+||||||+|+++|..|++.|.+|+|||+....+ .+.|+.+ ..+.... ...+....... -+....+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a---~~~~~~~~~~~~~g~~~~~~- 79 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAA---HIAHLRRESPFDDGLSAQAP- 79 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHH---HHHHHHhhccccCCcccCCC-
Confidence 456999999999999999999999999999999874322 2334321 1111000 00000000000 0000000
Q ss_pred eecCCceeecHHHH-------HHHH-----HHHHHH-CCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccC
Q 017240 180 LIGRAYGRVSRHLL-------HEEL-----LRRCVE-SGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASG 244 (375)
Q Consensus 180 ~~~~~~~~v~~~~l-------~~~L-----~~~~~~-~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G 244 (375)
.++...+ ...+ .+.+.+ .+++++...|+.++.+ .+.|++.+| .++++|.||+|||
T Consensus 80 -------~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~---~~~V~~~~g~~~~~~~d~lViATG 149 (468)
T PRK14694 80 -------VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER---TLTVTLNDGGEQTVHFDRAFIGTG 149 (468)
T ss_pred -------ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC---EEEEEecCCCeEEEECCEEEEeCC
Confidence 0111111 1222 122333 3899887778877543 567877776 4799999999999
Q ss_pred CCCccc--ccccCceeeecC--CCCCccCCCEEEEccCC
Q 017240 245 AASGKL--LEYEEWSYIPVG--GSLPNTEQRNLAFGAAA 279 (375)
Q Consensus 245 ~~s~~~--~~~~~~~~~p~~--~~~~~~~~~v~liGdaa 279 (375)
+.+..+ ....+..++... ..+...++++++||.+.
T Consensus 150 s~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~ 188 (468)
T PRK14694 150 ARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGASV 188 (468)
T ss_pred CCCCCCCCCCCCCCceEcchhhhchhcCCCeEEEECCCH
Confidence 865433 111111222211 11223467999999874
No 106
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.31 E-value=6.1e-11 Score=119.39 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=86.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCc---HHHHHhcCCchh----------------
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---EDEFRDLGLEGC---------------- 161 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~---~~~l~~~g~~~~---------------- 161 (375)
.++||||||+|.+|+++|+.+++.|.+|+||||....+.+ .+++ .+.....++.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 3589999999999999999999999999999998754321 1111 111111121110
Q ss_pred ---hhhh----------c-ccceEEeCC-----CC--CeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEc
Q 017240 162 ---IEHV----------W-RDTVVYIDE-----DE--PILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITES 219 (375)
Q Consensus 162 ---~~~~----------~-~~~~~~~~~-----~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~ 219 (375)
+.+. | ....+.+.. .. ...+.+..+......+...|.+.+++.|++++ ++.|+++..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 0000 0 000111110 00 00000111122345678888899999999999 9999999876
Q ss_pred CCceEEEEe--cCC--eEEecCEEEEccCCCCcc
Q 017240 220 TSGHRLVAC--EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 220 ~~~~~~V~~--~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
++.+..|.. .++ .++.++.||+|+|.++..
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 553444443 343 368999999999988754
No 107
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.31 E-value=9.8e-11 Score=116.76 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=111.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..|++.|.+|+|||+.+.....
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------------------------------ 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 57999999999999999999999999999987532211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc-c-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL-E-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~-------~~~~~~ 258 (375)
+ ..++...+.+.+++.|++++ ++.|+++..+++ .+.+++.+|.++.+|.||+|+|..+.... . ..+...
T Consensus 214 ~-d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~ 291 (461)
T PRK05249 214 L-DDEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQ 291 (461)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCc
Confidence 1 12466677778888999999 999999987655 56677777878999999999997765421 1 122334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+..... ...|..+|..+|..|.
T Consensus 292 i~vd~~~~t~~~~IyAiGD~~~~~~~-----~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 292 LKVNENYQTAVPHIYAVGDVIGFPSL-----ASASMDQGRIAAQHAV 333 (461)
T ss_pred EeeCCCcccCCCCEEEeeecCCCccc-----HhHHHHHHHHHHHHHc
Confidence 45555555557899999998753322 3678899998888875
No 108
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.30 E-value=3.3e-11 Score=122.33 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=53.5
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---CC--eEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...+...+.+.|++++ +++|+++..++++.+.|++. ++ .++.|+.||.|+|.|+..+
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHH
Confidence 678999999999999999999999 99999998876645556542 22 4799999999999998654
No 109
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.30 E-value=6.7e-12 Score=132.88 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=107.2
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|+. .|+. .|.....++++.+.+.+++-........ .............++|+||||||||++||
T Consensus 487 GrVC~h--~Ce~----~C~R~~~d~pV~I~~Lkr~a~d~~~~~~-------~~~~~~~~~~~~~kkVaIIGGGPAGLSAA 553 (1012)
T TIGR03315 487 GTICDH--QCQY----KCTRLDYDESVNIREMKKVAAEKGYDEY-------KTRWHKPQGKSSAHKVAVIGAGPAGLSAG 553 (1012)
T ss_pred hCcCCc--chHH----HhcCCCCCCCCcccHHHHHHHhhHHHhc-------CccCCCCCCCCCCCcEEEECCCHHHHHHH
Confidence 378887 5776 9999988999999888775433211000 00000001112457999999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE 203 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~ 203 (375)
+.|++.|++|+|||+....+..... ++ +...++. ++.....+.+.+
T Consensus 554 ~~LAr~G~~VTV~Ek~~~lGG~l~~--------~I-------------------------P~~rlp~-e~l~~~ie~l~~ 599 (1012)
T TIGR03315 554 YFLARAGHPVTVFEKKEKPGGVVKN--------II-------------------------PEFRISA-ESIQKDIELVKF 599 (1012)
T ss_pred HHHHHCCCeEEEEecccccCceeee--------cc-------------------------cccCCCH-HHHHHHHHHHHh
Confidence 9999999999999987543321100 00 0001222 334444566777
Q ss_pred CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc--eeee-------c--CCCCCccCCC
Q 017240 204 SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW--SYIP-------V--GGSLPNTEQR 271 (375)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~--~~~p-------~--~~~~~~~~~~ 271 (375)
.||+++ +... + ++..+.....+|.||+|+|++........+. .++. . .......+++
T Consensus 600 ~GVe~~~g~~~-d----------~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~ 668 (1012)
T TIGR03315 600 HGVEFKYGCSP-D----------LTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKH 668 (1012)
T ss_pred cCcEEEEeccc-c----------eEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCe
Confidence 899988 6321 0 1122223456899999999875443332111 1111 0 0011245789
Q ss_pred EEEEccCCCCCC
Q 017240 272 NLAFGAAASMVH 283 (375)
Q Consensus 272 v~liGdaa~~~~ 283 (375)
|++||++..+++
T Consensus 669 VVVIGGGnvAmD 680 (1012)
T TIGR03315 669 VVVVGGGNTAMD 680 (1012)
T ss_pred EEEECCCHHHHH
Confidence 999998865544
No 110
>PTZ00058 glutathione reductase; Provisional
Probab=99.29 E-value=1.1e-11 Score=125.28 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=88.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHHHhc-CCchhhhhhcccceEEeCCCCCeee
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEFRDL-GLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
.+|||+||||||+|.++|+.+++.|.+|+|||++...+ -++|+.+ ..+-.. .+.....+. ...-+....
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~---~~~Gi~~~~---- 119 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENS---RHYGFDTQF---- 119 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHH---HhcCCCccC----
Confidence 45999999999999999999999999999999875433 3556533 111110 110000000 000000000
Q ss_pred cCCce-ee-cHH----HHHHHHHHHHHHCCceEEEE--EEEE---EE------------EcCCceEEE------EecCCe
Q 017240 182 GRAYG-RV-SRH----LLHEELLRRCVESGVSYLSS--KVES---IT------------ESTSGHRLV------ACEHDM 232 (375)
Q Consensus 182 ~~~~~-~v-~~~----~l~~~L~~~~~~~gv~i~~~--~v~~---i~------------~~~~~~~~V------~~~~g~ 232 (375)
...+. .. ... .+.+.+.+.+++.||+++.. ++++ +. ..++..++| ..++|.
T Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 199 (561)
T PTZ00058 120 SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ 199 (561)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCc
Confidence 00000 00 111 23444555667789999833 3332 10 001112334 234667
Q ss_pred EEecCEEEEccCCCCcccccccCce-eeecCC--CCCccCCCEEEEccCCCCCC
Q 017240 233 IVPCRLATVASGAASGKLLEYEEWS-YIPVGG--SLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 233 ~i~a~~vI~A~G~~s~~~~~~~~~~-~~p~~~--~~~~~~~~v~liGdaa~~~~ 283 (375)
++++|.||+|||+.+..+ +..+.. .+.... .+.. ++++++||++..+++
T Consensus 200 ~i~ad~lVIATGS~P~~P-~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE 251 (561)
T PTZ00058 200 VIEGKNILIAVGNKPIFP-DVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVE 251 (561)
T ss_pred EEECCEEEEecCCCCCCC-CCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHH
Confidence 899999999999765432 222211 111111 1112 689999998864444
No 111
>PLN02507 glutathione reductase
Probab=99.29 E-value=1.6e-11 Score=123.27 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCC---------CCCC---CCCcCcH-HHHHh-cCCchhhhhhcccce
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD---------LPFT---NNYGVWE-DEFRD-LGLEGCIEHVWRDTV 170 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~---------~~~~---~~~g~~~-~~l~~-~g~~~~~~~~~~~~~ 170 (375)
..+|||+||||||+|+.+|..+++.|.+|+|||+. ..++ -+.|+.+ ..+-. ..+.....+. ....
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~-~~~G 101 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA-KNYG 101 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH-HhcC
Confidence 34699999999999999999999999999999962 1222 2345533 22211 0010000000 0000
Q ss_pred EEeCCCCCeeecCCceee--cHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCe--EEecCEEEEccCCC
Q 017240 171 VYIDEDEPILIGRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAA 246 (375)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~--~i~a~~vI~A~G~~ 246 (375)
..........+..-.... .-..+...+.+.+.+.||+++..+++.+..+ .+.|++.+|+ ++.+|.||+|||+.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~---~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN---EVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC---EEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 000000000000000000 0112334444556668999997777776543 5677777774 58999999999976
Q ss_pred CcccccccCce-eeecC--CCCCccCCCEEEEccCCCCC
Q 017240 247 SGKLLEYEEWS-YIPVG--GSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 247 s~~~~~~~~~~-~~p~~--~~~~~~~~~v~liGdaa~~~ 282 (375)
+..+ ...+.. .+... ..+...++++++||.+..++
T Consensus 179 p~~p-~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~ 216 (499)
T PLN02507 179 AQRP-NIPGKELAITSDEALSLEELPKRAVVLGGGYIAV 216 (499)
T ss_pred CCCC-CCCCccceechHHhhhhhhcCCeEEEECCcHHHH
Confidence 5432 111110 01101 11223467899999875443
No 112
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.29 E-value=6e-12 Score=124.84 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=93.0
Q ss_pred ccccceeeccCCCCccccccC----ccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHH
Q 017240 45 YKVTARATSNNAGSESCVAVK----EEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGL 120 (375)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl 120 (375)
|+|+.+..|+. .|.... .++++.++..+.+.......... ...+.+.....+||+||||||+|+
T Consensus 79 rvC~~~~~Ce~----~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~V~IIG~G~aGl 146 (449)
T TIGR01316 79 RVCPQERQCEG----QCTVGKMFKDVGKPVSIGALERFVADWERQHGI--------ETEPEKAPSTHKKVAVIGAGPAGL 146 (449)
T ss_pred cCCCCccchHh----hCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCC--------CcCCCCCCCCCCEEEEECcCHHHH
Confidence 99999999996 888766 77788877776643321110000 000111113458999999999999
Q ss_pred HHHHHHHHCCCcEEEECCCCCCCCC--CcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHH
Q 017240 121 ALAAESAKLGLNVGLIGPDLPFTNN--YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELL 198 (375)
Q Consensus 121 ~aA~~La~~G~~V~liE~~~~~~~~--~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~ 198 (375)
++|..|++.|++|+|||+....+.. +|+ +...++ ..+.....
T Consensus 147 ~aA~~l~~~G~~V~vie~~~~~GG~l~~gi-----------------------------------p~~~~~-~~~~~~~~ 190 (449)
T TIGR01316 147 ACASELAKAGHSVTVFEALHKPGGVVTYGI-----------------------------------PEFRLP-KEIVVTEI 190 (449)
T ss_pred HHHHHHHHCCCcEEEEecCCCCCcEeeecC-----------------------------------CCccCC-HHHHHHHH
Confidence 9999999999999999987533211 111 000122 23445555
Q ss_pred HHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 199 RRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 199 ~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
+.+++.|++++ ++.+. ..|++.+. ...+|.||+|+|++.+.
T Consensus 191 ~~l~~~gv~~~~~~~v~---------~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 191 KTLKKLGVTFRMNFLVG---------KTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred HHHHhCCcEEEeCCccC---------CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 66778899998 66441 12334333 34689999999985333
No 113
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.29 E-value=5.2e-11 Score=116.82 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=52.1
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEc-CCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...|.+.+.+.|++++ +++|+++... ++..+.|++.+| ++.++.||+|+|+++..+
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l 243 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVV 243 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHH
Confidence 467778888889999999999999 8999999764 343456888887 799999999999887643
No 114
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.29 E-value=5.8e-12 Score=132.59 Aligned_cols=184 Identities=16% Similarity=0.220 Sum_probs=110.8
Q ss_pred CccccceeeccCCCCccccccCcc-chhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEE-DYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~a 122 (375)
-|+|+.+..|.. .|+....+ +++.++..+.+......... .. ..+... .....||+||||||||+++
T Consensus 379 grvC~~~~~Ce~----~c~~~~~~~~~v~i~~l~r~~~d~~~~~~---~~----~~~~~~-~~~~~~V~IIGaGpAGl~a 446 (752)
T PRK12778 379 GRVCPQEKQCES----KCIHGKMGEEAVAIGYLERFVADYERESG---NI----SVPEVA-EKNGKKVAVIGSGPAGLSF 446 (752)
T ss_pred cCcCCCcCchHH----hcccCCCCCCCcCHHHHHHHHHHHHHHhC---CC----CCCCCC-CCCCCEEEEECcCHHHHHH
Confidence 499999999997 89988877 78877766664322110000 00 001101 1235799999999999999
Q ss_pred HHHHHHCCCcEEEECCCCCCCC--CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHH
Q 017240 123 AAESAKLGLNVGLIGPDLPFTN--NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRR 200 (375)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~--~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~ 200 (375)
|..|++.|++|+|||+....+. .||+ + ...++. .+.....+.
T Consensus 447 A~~l~~~G~~V~v~e~~~~~GG~l~~gi----------p-------------------------~~rlp~-~~~~~~~~~ 490 (752)
T PRK12778 447 AGDLAKRGYDVTVFEALHEIGGVLKYGI----------P-------------------------EFRLPK-KIVDVEIEN 490 (752)
T ss_pred HHHHHHCCCeEEEEecCCCCCCeeeecC----------C-------------------------CCCCCH-HHHHHHHHH
Confidence 9999999999999998643321 1111 0 001222 244455566
Q ss_pred HHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---eeeec---------C-----
Q 017240 201 CVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---SYIPV---------G----- 262 (375)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p~---------~----- 262 (375)
+.+.||+++ ++.+. ..|++++.....+|.||+|+|++.+...++.+. .++.. .
T Consensus 491 l~~~gv~~~~~~~v~---------~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~ 561 (752)
T PRK12778 491 LKKLGVKFETDVIVG---------KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASP 561 (752)
T ss_pred HHHCCCEEECCCEEC---------CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccc
Confidence 778899998 76541 123344434567999999999853333222211 11110 0
Q ss_pred --CCCCccCCCEEEEccCCCCCCC
Q 017240 263 --GSLPNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 263 --~~~~~~~~~v~liGdaa~~~~p 284 (375)
......+++|++||++..++|.
T Consensus 562 ~~~~~~~~gk~VvVIGgG~~a~d~ 585 (752)
T PRK12778 562 DSDTPIKFGKKVAVVGGGNTAMDS 585 (752)
T ss_pred cccCcccCCCcEEEECCcHHHHHH
Confidence 0111346899999998655443
No 115
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.29 E-value=1.4e-10 Score=115.67 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=109.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+.....
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 208 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------------------------------ 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------------------------------
Confidence 58999999999999999999999999999987532110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCcccc-cc-------cCc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLL-EY-------EEW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~-~~-------~~~ 256 (375)
. ...+.+.+.+.+++.|++++ ++.|+++..+++ .+.+.+.+| .++.+|.||+|+|..+.... .+ ...
T Consensus 209 ~-~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~ 286 (461)
T TIGR01350 209 E-DAEVSKVVAKALKKKGVKILTNTKVTAVEKNDD-QVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDER 286 (461)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCC
Confidence 1 12456667778888999999 999999987655 455666666 57999999999997764431 11 122
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..+.+...+....++|+++||++.... -...|+.+|..+|+.|..
T Consensus 287 g~i~vd~~l~t~~~~IyaiGD~~~~~~-----~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 287 GRIVVDEYMRTNVPGIYAIGDVIGGPM-----LAHVASHEGIVAAENIAG 331 (461)
T ss_pred CcEeeCCCcccCCCCEEEeeecCCCcc-----cHHHHHHHHHHHHHHHcC
Confidence 334444445555689999999986422 236788888888888753
No 116
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.29 E-value=1.2e-10 Score=120.81 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=62.7
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+||+.-.|+. .|++...++++.++..+++.......... .+ ..+.. .....+|+|||||||||++|
T Consensus 276 grvCp~~~~Ce~----~C~~~~~~~~v~I~~l~r~~~d~~~~~~~--~~----~~~~~--~~~~~~VaIIGaGpAGLsaA 343 (654)
T PRK12769 276 GRVCPQDRLCEG----ACTLRDEYGAVTIGNIERYISDQALAKGW--RP----DLSQV--TKSDKRVAIIGAGPAGLACA 343 (654)
T ss_pred cccCCCCCChHH----hccCCCCCCCeecCHHHHHHHHHHHHhCC--CC----CCccc--ccCCCEEEEECCCHHHHHHH
Confidence 499999989997 99999888899998888754322111000 00 00001 12347999999999999999
Q ss_pred HHHHHCCCcEEEECCCCC
Q 017240 124 AESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~ 141 (375)
..|++.|++|+|||+...
T Consensus 344 ~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 344 DVLARNGVAVTVYDRHPE 361 (654)
T ss_pred HHHHHCCCeEEEEecCCC
Confidence 999999999999998754
No 117
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.29 E-value=1.8e-10 Score=114.35 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=111.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..|++.|.+|+||++.+.....
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------------------------------ 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------------------------------
Confidence 48999999999999999999999999999987533211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCccc-ccc-------cCce
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKL-LEY-------EEWS 257 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~-~~~-------~~~~ 257 (375)
++ ..+.+.+.+.+++.||+++ ++.|+.+..++++.+.|++.+| .++.+|.||+|+|..+... +.. .+..
T Consensus 205 ~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G 283 (450)
T TIGR01421 205 FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKG 283 (450)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCC
Confidence 11 2456677788888999999 9999999865443356777777 5799999999999776543 111 2233
Q ss_pred eeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 258 YIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 258 ~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
.+.++..+....++++++||.+..... ...|..+|..+++.|.
T Consensus 284 ~i~vd~~~~T~~p~IyAiGD~~~~~~~-----~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 284 QIIVDEYQNTNVPGIYALGDVVGKVEL-----TPVAIAAGRKLSERLF 326 (450)
T ss_pred cEEeCCCCcCCCCCEEEEEecCCCccc-----HHHHHHHHHHHHHHHh
Confidence 444554455556799999998864432 3678889998888775
No 118
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.28 E-value=4.1e-11 Score=117.80 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=53.1
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
+.++...+...|.+.+++.|++++ ++.|++++.++++.+.|+++++ ++.+|.||+|+|.++..+
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l 260 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTAL 260 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHH
Confidence 356788999999999999999999 8999999877663445777765 799999999999987644
No 119
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.28 E-value=2.1e-11 Score=121.64 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcHHH-HHh-cCCchhhhh-hcccceEEeCCCCCee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWEDE-FRD-LGLEGCIEH-VWRDTVVYIDEDEPIL 180 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~~~-l~~-~g~~~~~~~-~~~~~~~~~~~~~~~~ 180 (375)
+|||+||||||+|+++|..+++.|++|+|||+....+ .++|+.+.. +-. ...-..... ......+....
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~----- 77 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKP----- 77 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccC-----
Confidence 4899999999999999999999999999999743333 345553321 111 000000000 00000000000
Q ss_pred ecCCce-eec-----HHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCccccc
Q 017240 181 IGRAYG-RVS-----RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 181 ~~~~~~-~v~-----~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~~ 252 (375)
...+. ... -..+...+...+++.||+++.... .+.. ++ .+.|.+.+| .++.+|.||+|||+.+..+..
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~-~~-~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg 153 (466)
T PRK06115 78 -TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG-VG-KVVVKAEDGSETQLEAKDIVIATGSEPTPLPG 153 (466)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-CC-EEEEEcCCCceEEEEeCEEEEeCCCCCCCCCC
Confidence 00000 000 011223344445567899884333 2322 22 456666666 369999999999987643221
Q ss_pred c--cCceeeecC--CCCCccCCCEEEEccCCCCC
Q 017240 253 Y--EEWSYIPVG--GSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 253 ~--~~~~~~p~~--~~~~~~~~~v~liGdaa~~~ 282 (375)
. ....++... ..+...++++++||.+..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~ 187 (466)
T PRK06115 154 VTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGL 187 (466)
T ss_pred CCCCCCeEECHHHHhCCccCCCeEEEECCCHHHH
Confidence 1 111112111 11223578999999875443
No 120
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.28 E-value=5e-11 Score=123.93 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=55.4
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
+.+++..+...|.+.+.+ |++++ ++.|+++...++ .+.|.+.+|..+.++.||+|+|.++..+.
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~-~~~v~t~~g~~~~ad~VV~A~G~~s~~l~ 467 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD-GWQLDFAGGTLASAPVVVLANGHDAARFA 467 (662)
T ss_pred CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC-EEEEEECCCcEEECCEEEECCCCCccccc
Confidence 578899999999999988 99999 999999987766 57788888877889999999999986553
No 121
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.28 E-value=5.8e-11 Score=119.52 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=53.1
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC----eEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD----MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g----~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...+...+.+.|++++ +++|+++..+++ .+.|++.++ .+++++.||.|+|.|+..+
T Consensus 150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 150 CWVDDARLVVLNALDAAERGATILTRTRCVSARREGG-LWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCC-EEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 467888999999999999999999 999999988765 566766554 3699999999999987544
No 122
>PLN02546 glutathione reductase
Probab=99.27 E-value=1.3e-11 Score=124.99 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=91.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCC---------CCCC---CCCcCcHHH-HHhc-CCchhhhhhcccce
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD---------LPFT---NNYGVWEDE-FRDL-GLEGCIEHVWRDTV 170 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~---------~~~~---~~~g~~~~~-l~~~-g~~~~~~~~~~~~~ 170 (375)
..+|||+|||+||+|..+|..|++.|.+|+|||+. ..++ -++|+.+.. +-.. .+.....+. ....
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~-~~~g 155 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES-RGFG 155 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh-hhcC
Confidence 34699999999999999999999999999999962 1122 255664321 1110 000000000 0000
Q ss_pred EEeCCCCCeeecCCceee--cHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 171 VYIDEDEPILIGRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
+.........+..-.... .-..+...+.+.+++.||+++...++.++.+ .|.+ +|+++.+|.||+|||+.+.
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~-----~V~v-~G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH-----TVDV-DGKLYTARNILIAVGGRPF 229 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC-----EEEE-CCEEEECCEEEEeCCCCCC
Confidence 000000000000000000 0123455666667778999996666666432 3444 5678999999999997764
Q ss_pred ccccccCce-eeecC--CCCCccCCCEEEEccCCCCCC
Q 017240 249 KLLEYEEWS-YIPVG--GSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 249 ~~~~~~~~~-~~p~~--~~~~~~~~~v~liGdaa~~~~ 283 (375)
.+ +..+.. .+... ......++++++||++..+++
T Consensus 230 ~P-~IpG~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE 266 (558)
T PLN02546 230 IP-DIPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALE 266 (558)
T ss_pred CC-CCCChhhccCHHHHHhccccCCeEEEECCCHHHHH
Confidence 33 111111 11111 112235679999998854443
No 123
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.27 E-value=2.9e-11 Score=118.66 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---CCCcCcHH-HHHh-cCCchhhhhhcccceEEeCCCCCee
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWED-EFRD-LGLEGCIEHVWRDTVVYIDEDEPIL 180 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---~~~g~~~~-~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
.+|||+|||+||+|..+|+.+++.|.+|+|||+....+ -++|+.+. .|-. ..+-....+.-....+..... ...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcC
Confidence 35999999999999999999999999999999985443 35666331 1111 000000000000001111110 000
Q ss_pred ecCCceee--cHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc--cccCc
Q 017240 181 IGRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL--EYEEW 256 (375)
Q Consensus 181 ~~~~~~~v--~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~--~~~~~ 256 (375)
+..-.... --..+...+...+++.||+++......+. ++ .+.|...+.++++++.+|+|||+++..+. +..+.
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~-~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~ 158 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PH-TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGA 158 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CC-EEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCC
Confidence 00000000 01123344444555679999855554443 22 44444433478999999999998875553 33444
Q ss_pred eeeecC--CCCCccCCCEEEEccCCCCCCCC
Q 017240 257 SYIPVG--GSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 257 ~~~p~~--~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
.++... ..+...++++++||.+..+++.+
T Consensus 159 ~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a 189 (454)
T COG1249 159 RILDSSDALFLLELPKSLVIVGGGYIGLEFA 189 (454)
T ss_pred eEEechhhcccccCCCEEEEECCCHHHHHHH
Confidence 343322 23346788999999987555443
No 124
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.27 E-value=2.1e-10 Score=113.12 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=112.6
Q ss_pred cEEEECCCHHHHHHHHHHHH--------------CCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeC
Q 017240 109 DLVVIGCGPAGLALAAESAK--------------LGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYID 174 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~--------------~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (375)
.|+|||||++|+.+|.+|+. .+.+|+||++.......
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999986 37899999976432111
Q ss_pred CCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc-
Q 017240 175 EDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE- 252 (375)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~- 252 (375)
+ ...+.+.+.+.+++.||+++ ++.|+++..+ .|.+++|+++.+|.+|.|.|..+..+..
T Consensus 226 -------------~-~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~ 286 (424)
T PTZ00318 226 -------------F-DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQ 286 (424)
T ss_pred -------------C-CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-----EEEECCCCEEEccEEEEccCCCCcchhhh
Confidence 1 12466777888888999999 9999988643 4667888899999999999976653321
Q ss_pred ----ccCceeeecCCCCC-ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 253 ----YEEWSYIPVGGSLP-NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 253 ----~~~~~~~p~~~~~~-~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
..+...+.++..+. ...++|+++||.+...++....-...|+++|..+|+.|...+.+.
T Consensus 287 ~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 287 LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred cCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 12234455555554 345789999999875332111123668999999999999988654
No 125
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.27 E-value=1.8e-10 Score=114.83 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=110.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|+|||+.+.....
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------------------------------ 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999987432111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC---eEEecCEEEEccCCCCccc-cccc------Cc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCRLATVASGAASGKL-LEYE------EW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g---~~i~a~~vI~A~G~~s~~~-~~~~------~~ 256 (375)
. ...+.+.+.+.+++.|++++ ++.|+++..+++ .+.+.+.++ +++.+|.||+|+|..+... ..+. ..
T Consensus 211 ~-~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~ 288 (462)
T PRK06416 211 E-DKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDR 288 (462)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecC
Confidence 1 12456677777888999999 999999987665 566666555 6799999999999776433 1111 13
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..++++..+....++|+++||.+.... -...|..+|..+|..|..
T Consensus 289 g~i~vd~~~~t~~~~VyAiGD~~~~~~-----~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 289 GFIEVDEQLRTNVPNIYAIGDIVGGPM-----LAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CEEeECCCCccCCCCEEEeeecCCCcc-----hHHHHHHHHHHHHHHHcC
Confidence 345555555556689999999986422 236788889888888753
No 126
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.27 E-value=3.5e-10 Score=111.05 Aligned_cols=150 Identities=24% Similarity=0.277 Sum_probs=116.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.++|||||+.|+..|..+++.|.+|+|||+.+.+...+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~----------------------------------------- 212 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE----------------------------------------- 212 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC-----------------------------------------
Confidence 479999999999999999999999999999986443221
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCe--EEecCEEEEccCCCCccc-c-------cccCc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAASGKL-L-------EYEEW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~--~i~a~~vI~A~G~~s~~~-~-------~~~~~ 256 (375)
..++.+.+.+.+++.|++++ +++++.+...+++ +.+++++|. ++.+|.|++|+|..+..- + .+.+.
T Consensus 213 --D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~r 289 (454)
T COG1249 213 --DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDR 289 (454)
T ss_pred --CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCC
Confidence 23678888888888889999 9999999887773 778887775 789999999999665443 2 22445
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..+.++......-++|+.+||..+...-+ +.|..++..+++.+..
T Consensus 290 g~I~VD~~~~Tnvp~IyA~GDV~~~~~La-----h~A~~eg~iaa~~i~g 334 (454)
T COG1249 290 GFIKVDDQMTTNVPGIYAIGDVIGGPMLA-----HVAMAEGRIAAENIAG 334 (454)
T ss_pred CCEEeCCccccCCCCEEEeeccCCCcccH-----hHHHHHHHHHHHHHhC
Confidence 56777733333358999999996555444 7889999999998875
No 127
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.26 E-value=1e-10 Score=112.30 Aligned_cols=154 Identities=25% Similarity=0.283 Sum_probs=115.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-------------CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEe
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG-------------LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYI 173 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G-------------~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~ 173 (375)
..+++|||||+.|..+|.+|+..- .+|+|||+.+.....+
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~--------------------------- 207 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMF--------------------------- 207 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCC---------------------------
Confidence 357999999999999999997641 3899999886443222
Q ss_pred CCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCe-EEecCEEEEccCCCCcccc
Q 017240 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDM-IVPCRLATVASGAASGKLL 251 (375)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~-~i~a~~vI~A~G~~s~~~~ 251 (375)
..++.++..+.+++.||+++ ++.|++++.+ .|++++|. +|.++.+|.|+|...+.+.
T Consensus 208 ----------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 208 ----------------PPKLSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTVVWAAGVRASPLL 266 (405)
T ss_pred ----------------CHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEEccCCeeEecCEEEEcCCCcCChhh
Confidence 23577788888889999999 9999999865 56777776 5999999999998876653
Q ss_pred cc---cC---ceeeecCCCCC-ccCCCEEEEccCCCCCC----CCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 252 EY---EE---WSYIPVGGSLP-NTEQRNLAFGAAASMVH----PATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 252 ~~---~~---~~~~p~~~~~~-~~~~~v~liGdaa~~~~----p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.. .+ .+.+-+...+. ...++|+++||.+...+ |.+. -.|.+.|..+++.|...+++.
T Consensus 267 ~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tA---Q~A~Qqg~~~a~ni~~~l~g~ 334 (405)
T COG1252 267 KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA---QAAHQQGEYAAKNIKARLKGK 334 (405)
T ss_pred hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChh---HHHHHHHHHHHHHHHHHhcCC
Confidence 31 11 12222233332 33568999999998887 4554 568899999999999999874
No 128
>PRK06370 mercuric reductase; Validated
Probab=99.26 E-value=6.7e-11 Score=118.01 Aligned_cols=163 Identities=20% Similarity=0.141 Sum_probs=85.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHHHhc-CCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEFRDL-GLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
+|||+||||||+|+++|+.|++.|++|+|||+....+ .++|+.+ ..+-.. .......+ .....+...... .
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~----~ 79 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARR-AAEYGVSVGGPV----S 79 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHH-HHhcCcccCccC----c
Confidence 5999999999999999999999999999999875443 2445422 111110 00000000 000000000000 0
Q ss_pred CCce-eecH-----HHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc--c
Q 017240 183 RAYG-RVSR-----HLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL--E 252 (375)
Q Consensus 183 ~~~~-~v~~-----~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~--~ 252 (375)
..+. ...+ ..+...+.+.+++. ||+++ ++.+ .+ ++. +|++ ++.++.+|.||+|||+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~--~~~---~v~v-~~~~~~~d~lViATGs~p~~p~i~G 152 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FE--SPN---TVRV-GGETLRAKRIFINTGARAAIPPIPG 152 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ec--cCC---EEEE-CcEEEEeCEEEEcCCCCCCCCCCCC
Confidence 0000 0000 01223445556666 99998 5543 22 222 3444 4567999999999998654331 1
Q ss_pred ccCceeeecC--CCCCccCCCEEEEccCCCC
Q 017240 253 YEEWSYIPVG--GSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 253 ~~~~~~~p~~--~~~~~~~~~v~liGdaa~~ 281 (375)
.....++... ......++++++||.+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g 183 (463)
T PRK06370 153 LDEVGYLTNETIFSLDELPEHLVIIGGGYIG 183 (463)
T ss_pred CCcCceEcchHhhCccccCCEEEEECCCHHH
Confidence 1111222211 1112346899999988533
No 129
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.26 E-value=3.4e-11 Score=120.39 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=88.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECC-------CCCCC--CCCcCcHH-HH-HhcCCchhhhhhcccceEEeCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGP-------DLPFT--NNYGVWED-EF-RDLGLEGCIEHVWRDTVVYIDE 175 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~-------~~~~~--~~~g~~~~-~l-~~~g~~~~~~~~~~~~~~~~~~ 175 (375)
.|||+||||||+|+++|+.+++.|.+|+|||+ ....+ .++|+.+. .+ ....+.....+...........
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 59999999999999999999999999999998 22111 23444322 11 1100000000000000000000
Q ss_pred CCCeeecCCce-eecH-H----HHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEe--cCCeEEecCEEEEccCCCC
Q 017240 176 DEPILIGRAYG-RVSR-H----LLHEELLRRCVESGVSYLSSKVESITESTSGHRLVAC--EHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 176 ~~~~~~~~~~~-~v~~-~----~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~--~~g~~i~a~~vI~A~G~~s 247 (375)
....+. .+.+ . .+...+.+.++..||+++...+..+...++ ...|.+ .++.++++|.||+|||+..
T Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 84 -----VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDA-GYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred -----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCC-CCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 000000 0111 1 122344455566799999666766654433 234444 3456899999999999876
Q ss_pred cccc--cccCceeeecC--CCCCccCCCEEEEccCCC
Q 017240 248 GKLL--EYEEWSYIPVG--GSLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 248 ~~~~--~~~~~~~~p~~--~~~~~~~~~v~liGdaa~ 280 (375)
..+. +.....++... ..+...+++++++|.+..
T Consensus 158 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 194 (475)
T PRK06327 158 RHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVI 194 (475)
T ss_pred CCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHH
Confidence 4321 11111122111 112234679999998753
No 130
>PLN02507 glutathione reductase
Probab=99.26 E-value=2.4e-10 Score=114.74 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=112.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|+++.+.....
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------------------------------ 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------------------------------
Confidence 47999999999999999999999999999976422111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc-c-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL-E-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~-------~~~~~~ 258 (375)
.+ .++.+.+.+.+++.||+++ ++.|+++..+++ .+.|.+.+|.++.+|.||+|+|..+.... . +.+...
T Consensus 242 ~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~ 319 (499)
T PLN02507 242 FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEG-GIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGA 319 (499)
T ss_pred cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC-eEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCc
Confidence 11 2456677777888999999 999999986655 46677777888999999999997765431 1 123344
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.++.... ...|..+|..+++.+.
T Consensus 320 I~Vd~~~~Ts~p~IyAiGDv~~~~~l-----~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 320 VKVDEYSRTNIPSIWAIGDVTNRINL-----TPVALMEGTCFAKTVF 361 (499)
T ss_pred EecCCCCcCCCCCEEEeeEcCCCCcc-----HHHHHHHHHHHHHHHc
Confidence 55555555567899999999875442 3688889998888774
No 131
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.26 E-value=8e-11 Score=115.81 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---CC--eEEecCEEEEccCCCCc
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~ 248 (375)
....+...|.+.+++.|++++ ++.++++..+++.++.|... +| .+++|+.||+|||.+..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 467889999999999999999 99999999987766666655 44 36889999999999886
No 132
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.26 E-value=2.3e-10 Score=111.06 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=108.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.+|+|||||++|+.+|..|++.|.+|+++++.......
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence 47999999999999999999999999999986432110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc-ccc---cc-Cceeeec
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK-LLE---YE-EWSYIPV 261 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~-~~~---~~-~~~~~p~ 261 (375)
.....+...+.+.+++.|++++ ++.|+++..+++ .+.|.+.+|+++.+|.||+|+|..+.. +.+ .. ... +.+
T Consensus 180 ~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g-i~v 257 (377)
T PRK04965 180 LMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS-GIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG-IVV 257 (377)
T ss_pred hCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC-EEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC-EEE
Confidence 0012456677777888999999 999999987655 567888888899999999999987643 211 11 112 334
Q ss_pred CCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 262 GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 262 ~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+..+....++|+++||.+.......+. +..+..+|..+|..|.
T Consensus 258 d~~l~ts~~~VyA~GD~a~~~~~~~~~-~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 258 DSYLQTSAPDIYALGDCAEINGQVLPF-LQPIQLSAMALAKNLL 300 (377)
T ss_pred CCCcccCCCCEEEeeecEeECCceeeh-HHHHHHHHHHHHHHhc
Confidence 444455568999999998654322121 3446677777777664
No 133
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.26 E-value=8.3e-11 Score=116.62 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=86.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC-CCC---CCcCcHH-HHHhcCCchhhhhhcccceEEeCCCCCeee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTN---NYGVWED-EFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~-~~~---~~g~~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
.|||+||||||+|+++|+.|++.|++|+|||+... .+. +.|+.+. .+-.....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~---------------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ---------------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc----------------------
Confidence 49999999999999999999999999999998743 231 3343221 11100000
Q ss_pred cCCce-eec-HHHHHHHH----HHHHHH-CCceEEEEEEEEEEEcCCceEEEEecCCe-EEecCEEEEccCCCCcccccc
Q 017240 182 GRAYG-RVS-RHLLHEEL----LRRCVE-SGVSYLSSKVESITESTSGHRLVACEHDM-IVPCRLATVASGAASGKLLEY 253 (375)
Q Consensus 182 ~~~~~-~v~-~~~l~~~L----~~~~~~-~gv~i~~~~v~~i~~~~~~~~~V~~~~g~-~i~a~~vI~A~G~~s~~~~~~ 253 (375)
...+. .+. ...+...+ .+.+.+ .|++++...+..+.. + .+.|.+.+|. ++.+|.||+|||+.+..+ +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~-~~~v~~~~g~~~~~~d~lviATGs~p~~p-~i 136 (441)
T PRK08010 61 HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINN--H-SLRVHRPEGNLEIHGEKIFINTGAQTVVP-PI 136 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecC--C-EEEEEeCCCeEEEEeCEEEEcCCCcCCCC-CC
Confidence 00000 000 11122222 223333 489998666766643 2 5677777774 799999999999875433 11
Q ss_pred cC----ceeeecC--CCCCccCCCEEEEccCCCC
Q 017240 254 EE----WSYIPVG--GSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 254 ~~----~~~~p~~--~~~~~~~~~v~liGdaa~~ 281 (375)
.+ ..++... ......++++++||++..+
T Consensus 137 ~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g 170 (441)
T PRK08010 137 PGITTTPGVYDSTGLLNLKELPGHLGILGGGYIG 170 (441)
T ss_pred CCccCCCCEEChhHhhcccccCCeEEEECCCHHH
Confidence 11 1122211 1122346789999977543
No 134
>PRK13748 putative mercuric reductase; Provisional
Probab=99.25 E-value=7.1e-11 Score=120.65 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=88.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHH-HHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-FRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
..|||+||||||+|+++|..|++.|.+|+|||++...+ .++|+.+.. +-... .......... ++.. ....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~---~~~~~~~~~~--~~~g--~~~~ 169 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAA---HIAHLRRESP--FDGG--IAAT 169 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHH---HHHHHHhccc--ccCC--ccCC
Confidence 46999999999999999999999999999999874332 245553321 11000 0000000000 0000 0000
Q ss_pred CCceeecHHHH-------HHH-----HHHHHHHC-CceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCC
Q 017240 183 RAYGRVSRHLL-------HEE-----LLRRCVES-GVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAAS 247 (375)
Q Consensus 183 ~~~~~v~~~~l-------~~~-----L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s 247 (375)
.+ .++...+ ... ..+.+.+. +|+++...++.++. . .+.|.+.+| .++++|.||+|||+.+
T Consensus 170 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 170 VP--TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD--Q-TLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CC--ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC--C-EEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 00 1112112 111 12223344 79988666665542 2 567776665 3699999999999875
Q ss_pred ccc--ccccCceeeecCC--CCCccCCCEEEEccCCCCC
Q 017240 248 GKL--LEYEEWSYIPVGG--SLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 248 ~~~--~~~~~~~~~p~~~--~~~~~~~~v~liGdaa~~~ 282 (375)
..+ .......++.... .....++++++||++..++
T Consensus 245 ~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~ 283 (561)
T PRK13748 245 AVPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVAL 283 (561)
T ss_pred CCCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHH
Confidence 433 1111111221111 1123467999999885433
No 135
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.25 E-value=3.2e-10 Score=112.56 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=110.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|++|+.+|..+++.|.+|+|+++.......
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------ 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence 47999999999999999999999999999976432111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
++ .++...+.+.+++.|++++ ++.|+++...++ .+.|++.+|.++.+|.||+|+|..+... +. ..+...
T Consensus 205 ~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~ 282 (446)
T TIGR01424 205 FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDD-GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGA 282 (446)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCc
Confidence 11 2455667777888999999 999999986655 4667777787899999999999765432 11 122334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||......-+ ..|..+|..+++.|.
T Consensus 283 i~vd~~~~Ts~~~IyA~GD~~~~~~l~-----~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 283 IAVDEYSRTSIPSIYAVGDVTDRINLT-----PVAIMEATCFANTEF 324 (446)
T ss_pred EEeCCCCccCCCCEEEeeccCCCccch-----hHHHHHHHHHHHHHh
Confidence 555555555678999999998653322 578888888888775
No 136
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.24 E-value=3.4e-10 Score=113.13 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=110.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHC---CCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~---G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
-.|+|||||+.|+.+|..++.. |.+|+|||+.+.....
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence 4799999999999999876554 9999999977533211
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccC
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEE 255 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~ 255 (375)
++ ..+.+.+.+.+++.|++++ ++.|+.+..++++...|++.+|.++.+|.||+|+|..+... .. ..+
T Consensus 229 ---~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~ 304 (486)
T TIGR01423 229 ---FD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTK 304 (486)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECC
Confidence 11 3466777888888999999 99999998654434567777777899999999999776543 11 123
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
...+.++..+....++|+++||..+.... ...|..+|..+++.|.
T Consensus 305 ~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l-----~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 305 KGAIQVDEFSRTNVPNIYAIGDVTDRVML-----TPVAINEGAAFVDTVF 349 (486)
T ss_pred CCCEecCCCCcCCCCCEEEeeecCCCccc-----HHHHHHHHHHHHHHHh
Confidence 34455555555567899999999764322 3678888888888775
No 137
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.24 E-value=4.1e-12 Score=125.28 Aligned_cols=134 Identities=22% Similarity=0.208 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCC---------cCcHHHHHhcCCchhhhhhcccceEEeCCCCCe
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---------GVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPI 179 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~---------g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
|||||||||+|++||+.+++.|.+|+|||+....+... +.+......-++...+.......... . ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~-~--~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGY-P--QED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccc-c--ccc
Confidence 89999999999999999999999999999987554211 00100000001111111111000000 0 000
Q ss_pred eecCC-ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC--C-eEEecCEEEEccCC
Q 017240 180 LIGRA-YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--D-MIVPCRLATVASGA 245 (375)
Q Consensus 180 ~~~~~-~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~--g-~~i~a~~vI~A~G~ 245 (375)
..... ...+++..+...|.+.+.+.|++++ ++.|.++..+++.+..|++.+ | .++.|+.+|+|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0235667777888888888999999 999999998876566666643 3 68999999999994
No 138
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.24 E-value=3.7e-10 Score=112.61 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=61.7
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|+..-.|+. .|+.....+++.++..+++-........ .. ...+.. ..+..+|+||||||+|+++|
T Consensus 90 grvC~~~~~Ce~----~C~~~~~~~~v~i~~l~r~~~~~~~~~~--~~----~~~~~~--~~~~~~V~IIG~GpaGl~aA 157 (467)
T TIGR01318 90 GRVCPQDRLCEG----ACTLNDEFGAVTIGNLERYITDTALAMG--WR----PDLSHV--VPTGKRVAVIGAGPAGLACA 157 (467)
T ss_pred cccCCCCCChHH----hCcCCCCCCCccHHHHHHHHHHHHHHhC--CC----CCCCCc--CCCCCeEEEECCCHHHHHHH
Confidence 399998888987 9999888888888877765332211100 00 000111 12347999999999999999
Q ss_pred HHHHHCCCcEEEECCCCC
Q 017240 124 AESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~ 141 (375)
..|++.|++|+|+|+.+.
T Consensus 158 ~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 158 DILARAGVQVVVFDRHPE 175 (467)
T ss_pred HHHHHcCCeEEEEecCCC
Confidence 999999999999998764
No 139
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.24 E-value=7.5e-11 Score=116.84 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=83.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC-CCC---CCcCcHH-HHHhcCCchhhhhhcccceEEeCCCCCeee
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTN---NYGVWED-EFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~-~~~---~~g~~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
.|||+||||||||+++|..|++.|++|+|||++.. ++. +.|+.+. .+-.....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~---------------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK---------------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----------------------
Confidence 59999999999999999999999999999998752 232 3333221 11000000
Q ss_pred cCCce-eec-H----HHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecC-CeEEecCEEEEccCCCCccc--cc
Q 017240 182 GRAYG-RVS-R----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASGKL--LE 252 (375)
Q Consensus 182 ~~~~~-~v~-~----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~-g~~i~a~~vI~A~G~~s~~~--~~ 252 (375)
...+. .+. . ..+.....+.+.+.||+++...+..+. +. .+.++..+ ..++.+|.||+|||+.+..+ ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~-~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G 137 (438)
T PRK07251 61 NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVS--NK-VIEVQAGDEKIELTAETIVINTGAVSNVLPIPG 137 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCC
Confidence 00000 000 1 112233345566789999854454432 22 34454322 35799999999999876432 11
Q ss_pred ccC-ceeeecC--CCCCccCCCEEEEccCC
Q 017240 253 YEE-WSYIPVG--GSLPNTEQRNLAFGAAA 279 (375)
Q Consensus 253 ~~~-~~~~p~~--~~~~~~~~~v~liGdaa 279 (375)
..+ ..++... ..+...++++++||.+.
T Consensus 138 ~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~ 167 (438)
T PRK07251 138 LADSKHVYDSTGIQSLETLPERLGIIGGGN 167 (438)
T ss_pred cCCCCcEEchHHHhcchhcCCeEEEECCCH
Confidence 111 1121111 11223467899999884
No 140
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-11 Score=112.85 Aligned_cols=151 Identities=23% Similarity=0.324 Sum_probs=107.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
..|||+||||||||.++|++.+++|++.-|+-... +. +.++.++++..+. -+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf--GG------QvldT~~IENfIs-------------------v~- 261 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF--GG------QVLDTMGIENFIS-------------------VP- 261 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh--CC------eeccccchhheec-------------------cc-
Confidence 45999999999999999999999999988873221 11 1122233322111 01
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC--CceEEEEecCCeEEecCEEEEccCCCCccc-----ccc--cC
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST--SGHRLVACEHDMIVPCRLATVASGAASGKL-----LEY--EE 255 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-----~~~--~~ 255 (375)
.....+|...|.+..++..|++. ..+++++.+.. ++...|++.+|-.++++.||+|||++.... .+| .+
T Consensus 262 -~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKG 340 (520)
T COG3634 262 -ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKG 340 (520)
T ss_pred -cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCC
Confidence 14466899999999999999999 77888887742 236789999999999999999999987654 112 23
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCC
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
..|.|...-.-+.+++|.+||++.++++.+
T Consensus 341 VayCPHCDGPLF~gK~VAVIGGGNSGvEAA 370 (520)
T COG3634 341 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAA 370 (520)
T ss_pred eeeCCCCCCcccCCceEEEECCCcchHHHH
Confidence 456663333346688999999998776654
No 141
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.24 E-value=4e-10 Score=112.53 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=108.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|+|+.......
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------------------------------ 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999976422111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec--CC--eEEecCEEEEccCCCCcccc---c-----cc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HD--MIVPCRLATVASGAASGKLL---E-----YE 254 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~--~g--~~i~a~~vI~A~G~~s~~~~---~-----~~ 254 (375)
. ...+...+.+.+++.||+++ ++.|+++..+++ .+.+.+. +| .++.+|.||+|+|..+.... . +.
T Consensus 211 ~-d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~ 288 (466)
T PRK07818 211 E-DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGS-KVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALT 288 (466)
T ss_pred c-CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-eEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEEC
Confidence 1 12456677788888999999 999999986554 4445443 55 47999999999997765421 1 12
Q ss_pred CceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 255 EWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 255 ~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+...+.++..+....++|+++||.+....- ...|..+|..+|..|.
T Consensus 289 ~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l-----~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 289 DRGAIAIDDYMRTNVPHIYAIGDVTAKLQL-----AHVAEAQGVVAAETIA 334 (466)
T ss_pred CCCcEeeCCCcccCCCCEEEEeecCCCccc-----HhHHHHHHHHHHHHHc
Confidence 233455555555667899999999864322 3678888988888875
No 142
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.23 E-value=1.2e-10 Score=114.34 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=50.2
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-----eEEecCEEEEccCCCCccc
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-----~~i~a~~vI~A~G~~s~~~ 250 (375)
.++...+...|.+.+++.|++++ +++|+++..+++ .+++.+.++ .++++|.||+|+|.++..+
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l 261 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGG-GVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRAL 261 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCccceEecCEEEECCCcChHHH
Confidence 46777888999999999999999 899999987665 455544332 3799999999999997544
No 143
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.23 E-value=5e-11 Score=118.96 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=83.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHHH--HHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE--FRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~~--l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
.|||+||||||+|+++|+.|++.|.+|+|||++...+ .++|+.+.. +....+.....+......+ ... ..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi--~~~----~~ 77 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI--SGE----VT 77 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC--CcC----cc
Confidence 4899999999999999999999999999999864333 234442211 1000000000000000000 000 00
Q ss_pred CCce--eecHHHH----HHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCccccccc
Q 017240 183 RAYG--RVSRHLL----HEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLLEYE 254 (375)
Q Consensus 183 ~~~~--~v~~~~l----~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~~~~ 254 (375)
..+. .-....+ ...+...++..+|+.+......+. .. .+.|...+| .++++|.||+|||+.+..+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~-~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~ 154 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--AN-TLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTS 154 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CC-EEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCC
Confidence 0000 0001111 222223334467887744443332 22 456665555 47999999999998764432111
Q ss_pred -CceeeecCC--CCCccCCCEEEEccCC
Q 017240 255 -EWSYIPVGG--SLPNTEQRNLAFGAAA 279 (375)
Q Consensus 255 -~~~~~p~~~--~~~~~~~~v~liGdaa 279 (375)
...++.... .....++++++||.+.
T Consensus 155 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ 182 (466)
T PRK07818 155 LSENVVTYEEQILSRELPKSIVIAGAGA 182 (466)
T ss_pred CCCcEEchHHHhccccCCCeEEEECCcH
Confidence 011222111 1123467999999875
No 144
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.23 E-value=9.1e-11 Score=113.35 Aligned_cols=137 Identities=26% Similarity=0.307 Sum_probs=87.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC----CCCcC---------------------cHHHHHhcCCchh-
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT----NNYGV---------------------WEDEFRDLGLEGC- 161 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~----~~~g~---------------------~~~~l~~~g~~~~- 161 (375)
+||+|||||++|+++|++|++.|.+|+|||+..... .+.|. |.+..+.+++.-.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 80 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE 80 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 599999999999999999999999999999875321 11121 1122222221100
Q ss_pred ---------------hhhh---ccc-c--eEEeCCCC-----C---------eeecCCceeecHHHHHHHHHHHHHHC-C
Q 017240 162 ---------------IEHV---WRD-T--VVYIDEDE-----P---------ILIGRAYGRVSRHLLHEELLRRCVES-G 205 (375)
Q Consensus 162 ---------------~~~~---~~~-~--~~~~~~~~-----~---------~~~~~~~~~v~~~~l~~~L~~~~~~~-g 205 (375)
.... ... . ...++..+ + ..+.+..+.+++..+...|.+.+.+. |
T Consensus 81 ~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~G 160 (365)
T TIGR03364 81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG 160 (365)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCC
Confidence 0000 000 0 11111100 0 01111235788999999999988775 9
Q ss_pred ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 206 VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 206 v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
++++ +++|+++... .|++.+| ++.||.||+|+|+++..+
T Consensus 161 v~i~~~t~V~~i~~~-----~v~t~~g-~i~a~~VV~A~G~~s~~l 200 (365)
T TIGR03364 161 VEFHWNTAVTSVETG-----TVRTSRG-DVHADQVFVCPGADFETL 200 (365)
T ss_pred CEEEeCCeEEEEecC-----eEEeCCC-cEEeCEEEECCCCChhhh
Confidence 9999 8999999642 5777777 578999999999987654
No 145
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.23 E-value=3.2e-11 Score=125.91 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=57.7
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCc--chhcc----cc-cccCCCCCCCCCCcccEEEECCC
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNK--SMDKQ----SK-LADKLPPISIGNGILDLVVIGCG 116 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----~~-~~~~~~~~~~~~~~~DVvIIGgG 116 (375)
.|+|+ .|+. .|+.. .++++.++..+.+-....-.- ..+.. .. .....++.+...+..+|+|||||
T Consensus 321 ~RVCp---~CE~----aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaG 392 (1028)
T PRK06567 321 HRICN---DCSK----ACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLG 392 (1028)
T ss_pred CccCc---chHH----HhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcC
Confidence 48998 4887 99988 778888888776432210000 00000 00 00000111222345799999999
Q ss_pred HHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 117 PAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 117 ~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
|||+++|+.|++.|++|+|+|+...
T Consensus 393 PAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 393 PAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred HHHHHHHHHHHhCCCeEEEEccccc
Confidence 9999999999999999999998643
No 146
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.23 E-value=5e-10 Score=111.76 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=111.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|+.|+.+|..|++.|.+|++|++.......
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 47999999999999999999999999999976432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc-c-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL-E-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~-------~~~~~~ 258 (375)
. ...+...+.+.+++.||+++ ++.|++++.+++ .+.|.+.+|+++.+|.||+|+|..+.... . +.+..+
T Consensus 216 ~-d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~ 293 (466)
T PRK07845 216 E-DADAAEVLEEVFARRGMTVLKRSRAESVERTGD-GVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGH 293 (466)
T ss_pred C-CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCc
Confidence 1 12355677778888999999 999999976655 46677777888999999999997765431 1 123344
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+....- .+.|..+|..++..+.
T Consensus 294 i~Vd~~~~Ts~~~IyA~GD~~~~~~l-----~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 294 ITVDRVSRTSVPGIYAAGDCTGVLPL-----ASVAAMQGRIAMYHAL 335 (466)
T ss_pred EeECCCcccCCCCEEEEeeccCCccc-----hhHHHHHHHHHHHHHc
Confidence 55555555567899999999865433 3778888888877664
No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.22 E-value=2.6e-10 Score=112.65 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=110.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|++|++....... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~-----------------------------------------~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK-----------------------------------------L 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-----------------------------------------c
Confidence 47999999999999999999999999999977432100 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-c-----cccCceeee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-L-----EYEEWSYIP 260 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~-----~~~~~~~~p 260 (375)
.+ ..+...+.+.+++.||+++ ++.|+++..++. + +.+.+|+++.+|.||+|+|..+... . ...+.+.+.
T Consensus 177 ~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~ 252 (427)
T TIGR03385 177 FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEER--V-KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIW 252 (427)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC--E-EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEE
Confidence 11 2456667777888999999 999999976432 3 4556777899999999999776432 1 112234455
Q ss_pred cCCCCCccCCCEEEEccCCCCCCCCChHH-----HHHHHhhHHHHHHHHH
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVHPATGYS-----VVRSLSEAPNYASAIA 305 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~p~~G~G-----i~~al~~a~~~a~~i~ 305 (375)
++..+....++|+++||.+...++.+|.. ...|..+|..+|+.|.
T Consensus 253 vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 253 VNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred ECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 55555555689999999998766554421 2567788888887774
No 148
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.22 E-value=1.6e-10 Score=116.44 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=52.0
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC---C--eEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~---g--~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...+.+.+.+.|++++ +++|+++..+++ .+.|++.+ | .++.++.||+|+|.|+..+
T Consensus 150 g~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRENG-LWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred cccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCC-EEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 467888888888888999999999 999999987655 56666553 4 3799999999999987543
No 149
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.22 E-value=5.2e-10 Score=111.63 Aligned_cols=149 Identities=20% Similarity=0.206 Sum_probs=108.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||+|++|+.+|..|++.|.+|+|||+.+.....
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------ 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence 58999999999999999999999999999987432111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---CCeEEecCEEEEccCCCCccc-ccc-------cC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HDMIVPCRLATVASGAASGKL-LEY-------EE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g~~i~a~~vI~A~G~~s~~~-~~~-------~~ 255 (375)
. ...+...+.+.+++.||+++ ++.|+.+..+++ .+.+++. +++++.+|.||+|+|..+... +.. .+
T Consensus 205 ~-d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~ 282 (463)
T TIGR02053 205 E-EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGG-GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDE 282 (463)
T ss_pred c-CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECC
Confidence 1 12355667777788999999 999999987654 4445443 236899999999999766443 211 22
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
...+.++..+....++|+++||.+....- ...|..+|..+|..|.
T Consensus 283 ~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~-----~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 283 RGGILVDETLRTSNPGIYAAGDVTGGLQL-----EYVAAKEGVVAAENAL 327 (463)
T ss_pred CCcEeECCCccCCCCCEEEeeecCCCccc-----HhHHHHHHHHHHHHhc
Confidence 33444555555567899999999875321 3778888988888775
No 150
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.21 E-value=3.1e-11 Score=118.55 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=117.8
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|++.-.|.+ .|++..++.+++.+..+........... ..... .+.+.....|+||||||+||++|
T Consensus 72 gRvcp~~~~ceg----~cv~~~~~~~v~i~~le~~i~d~~~~~g-----~i~~~---~~~~~tg~~VaviGaGPAGl~~a 139 (457)
T COG0493 72 GRVCPLGNLCEG----ACVLGIEELPVNIGALERAIGDKADREG-----WIPGE---LPGSRTGKKVAVIGAGPAGLAAA 139 (457)
T ss_pred CccCCCCCceee----eeeeccCCCchhhhhHHHHHhhHHHHhC-----CCCCC---CCCCCCCCEEEEECCCchHhhhH
Confidence 599999999998 9999888888877766654222111000 00000 11012236899999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCC--CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
..|++.|++|+++|+....+ ..||+.... + ..++.+...+.+
T Consensus 140 ~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~k-----------------------------------l-~k~i~d~~i~~l 183 (457)
T COG0493 140 DDLSRAGHDVTVFERVALDGGLLLYGIPDFK-----------------------------------L-PKDILDRRLELL 183 (457)
T ss_pred HHHHhCCCeEEEeCCcCCCceeEEecCchhh-----------------------------------c-cchHHHHHHHHH
Confidence 99999999999999876544 233331111 1 234666677788
Q ss_pred HHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---eeee-----------------
Q 017240 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---SYIP----------------- 260 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p----------------- 260 (375)
++.|++++ ++++-. .++.++- .-.+|+|++|+|...+...+..+. .+..
T Consensus 184 ~~~Gv~~~~~~~vG~---------~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~ 253 (457)
T COG0493 184 ERSGVEFKLNVRVGR---------DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFA 253 (457)
T ss_pred HHcCeEEEEcceECC---------cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccc
Confidence 88999999 887731 2222221 123499999999887776554221 1110
Q ss_pred cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
........++++++||.+..++|.+
T Consensus 254 ~~~~~~~~gk~vvVIGgG~Ta~D~~ 278 (457)
T COG0493 254 EDRTPPAKGKRVVVIGGGDTAMDCA 278 (457)
T ss_pred cccCCCCCCCeEEEECCCCCHHHHH
Confidence 0111122348999999999888887
No 151
>PRK06370 mercuric reductase; Validated
Probab=99.21 E-value=7.4e-10 Score=110.50 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=108.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||+|+.|+.+|..|++.|.+|+|+++.......
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------ 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence 48999999999999999999999999999987533211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe--c-CCeEEecCEEEEccCCCCccc-ccc-------cC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--E-HDMIVPCRLATVASGAASGKL-LEY-------EE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~--~-~g~~i~a~~vI~A~G~~s~~~-~~~-------~~ 255 (375)
. ...+.+.+.+.+++.|++++ ++.|+++..+++ ...|.+ . ++.++.+|.||+|+|..+... +.. .+
T Consensus 210 ~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~ 287 (463)
T PRK06370 210 E-DEDVAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDA 287 (463)
T ss_pred c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECC
Confidence 0 12355667777888999999 999999987655 334433 2 345799999999999766432 211 22
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
...+.++..+....++|+++||.+..... ...|..+|..+++.|.
T Consensus 288 ~G~i~vd~~l~t~~~~IyAiGD~~~~~~~-----~~~A~~~g~~aa~ni~ 332 (463)
T PRK06370 288 RGYIKVDDQLRTTNPGIYAAGDCNGRGAF-----THTAYNDARIVAANLL 332 (463)
T ss_pred CCcEeECcCCcCCCCCEEEeeecCCCccc-----HHHHHHHHHHHHHHHh
Confidence 33455555555667899999999765332 2678888888888875
No 152
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.20 E-value=7.2e-10 Score=110.92 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=108.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|+.|+.+|..|++.|.+|+|||+.+.....
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------------------------------ 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------------------------------
Confidence 48999999999999999999999999999987532111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC--C--eEEecCEEEEccCCCCccc---c-----ccc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAASGKL---L-----EYE 254 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~--g--~~i~a~~vI~A~G~~s~~~---~-----~~~ 254 (375)
.+ .++...+.+.+++.|++++ ++.|+.+..+++ .+.+.+.+ | .++.+|.||+|+|..+... . ...
T Consensus 222 ~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~ 299 (475)
T PRK06327 222 AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLD 299 (475)
T ss_pred CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeC
Confidence 11 3466677777888999999 999999987655 45555443 3 4799999999999776542 1 112
Q ss_pred CceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 255 EWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 255 ~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+...+.++..+....++|+++||.+.... -...|..++..+|+.|.
T Consensus 300 ~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 300 ERGFIPVDDHCRTNVPNVYAIGDVVRGPM-----LAHKAEEEGVAVAERIA 345 (475)
T ss_pred CCCeEeECCCCccCCCCEEEEEeccCCcc-----hHHHHHHHHHHHHHHHc
Confidence 33445555555555689999999876432 24778888888888875
No 153
>PRK07846 mycothione reductase; Reviewed
Probab=99.20 E-value=7.1e-10 Score=110.12 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=106.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+||++.+.....
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------------------------------ 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------------------------------
Confidence 48999999999999999999999999999987532211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
.+ .++.+.+.+. .+.|++++ ++.|+++..+++ .+.|.+.+|+++.+|.||+|+|..+... .. +.+...
T Consensus 205 ~d-~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~ 281 (451)
T PRK07846 205 LD-DDISERFTEL-ASKRWDVRLGRNVVGVSQDGS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGR 281 (451)
T ss_pred cC-HHHHHHHHHH-HhcCeEEEeCCEEEEEEEcCC-EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCc
Confidence 11 1233444433 34689999 999999986655 5667777788899999999999876542 11 123334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+...... +.|...+..+++.|.
T Consensus 282 i~Vd~~~~Ts~p~IyA~GD~~~~~~l~-----~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 282 VVVDEYQRTSAEGVFALGDVSSPYQLK-----HVANHEARVVQHNLL 323 (451)
T ss_pred EeECCCcccCCCCEEEEeecCCCccCh-----hHHHHHHHHHHHHHc
Confidence 445555555678999999998754332 577888888888775
No 154
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.20 E-value=3.2e-10 Score=115.00 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=86.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC-C----CcC---------cH----HHHHhc-CC--chhhh-
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-N----YGV---------WE----DEFRDL-GL--EGCIE- 163 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~----~g~---------~~----~~l~~~-g~--~~~~~- 163 (375)
.++||+|||+|.||++||+.+++.|.+|+||||...... . .|+ .. +.+..- ++ +..+.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 358999999999999999999999999999999865321 0 111 01 111110 11 00000
Q ss_pred ---------hhcccceEEeCCCC--Ceee----cCCc-------eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC
Q 017240 164 ---------HVWRDTVVYIDEDE--PILI----GRAY-------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST 220 (375)
Q Consensus 164 ---------~~~~~~~~~~~~~~--~~~~----~~~~-------~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~ 220 (375)
.......+.++... .... +..+ +......+...|.+.+++.||+++ ++.|+++..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 00011111111110 0000 0000 112356788899999988999999 99999998765
Q ss_pred C-ceEEEEe-------cCC-eEEecCEEEEccCCCCcc
Q 017240 221 S-GHRLVAC-------EHD-MIVPCRLATVASGAASGK 249 (375)
Q Consensus 221 ~-~~~~V~~-------~~g-~~i~a~~vI~A~G~~s~~ 249 (375)
+ .+..|.. .++ ..+.|+.||+|||+++..
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 3 3444443 233 468999999999998753
No 155
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.20 E-value=1.8e-10 Score=105.50 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=96.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcC-----------------------cHHHHHh----
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGV-----------------------WEDEFRD---- 155 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~-----------------------~~~~l~~---- 155 (375)
...||+|||||.-|+++|++|+|+|.+++++|+.+.... .-|. |...-..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 358999999999999999999999999999998653220 0010 1110000
Q ss_pred ---------------------------cCCchh------hhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHH
Q 017240 156 ---------------------------LGLEGC------IEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (375)
Q Consensus 156 ---------------------------~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~ 202 (375)
-++.+. +.+.++. ...++++........-|.+...+-.+.|...++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 000000 0011111 222333333333344468888999999999999
Q ss_pred HCCceEE-EEEEEEEEEcC--CceEEEEecCCeEEecCEEEEccCCCCcccc
Q 017240 203 ESGVSYL-SSKVESITEST--SGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~--~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
+.|+.++ +..|+.+...+ +..+.|.|.+|..+.++.+|.++|+|...++
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence 9999999 88888776432 2378899999988999999999999976553
No 156
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.20 E-value=3.9e-11 Score=119.43 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=103.4
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|+.+..|+. .|++.....++.....+.+......... ..++.+......+|+||||||+|+++|
T Consensus 90 g~vc~~~~~C~~----~C~~~~~~~~v~i~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~VvIIGgGpaGl~aA 156 (457)
T PRK11749 90 GRVCPQERLCEG----ACVRGKKGEPVAIGRLERYITDWAMETG---------WVLFKRAPKTGKKVAVIGAGPAGLTAA 156 (457)
T ss_pred cCcCCCccCHHH----HhcCCCCCCCcchHHHHHHHHHHHHhcC---------CCCCCCCccCCCcEEEECCCHHHHHHH
Confidence 489999988986 7887654444443333321111000000 000011113347999999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE 203 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~ 203 (375)
..|++.|++|+|||+....+.... ++++ . ... ...+...+.+.+.+
T Consensus 157 ~~l~~~g~~V~lie~~~~~gG~l~--------~gip------------------------~-~~~-~~~~~~~~~~~l~~ 202 (457)
T PRK11749 157 HRLARKGYDVTIFEARDKAGGLLR--------YGIP------------------------E-FRL-PKDIVDREVERLLK 202 (457)
T ss_pred HHHHhCCCeEEEEccCCCCCcEee--------ccCC------------------------C-ccC-CHHHHHHHHHHHHH
Confidence 999999999999998754331110 0000 0 001 22455666777788
Q ss_pred CCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---eeeec-------C----CCCCcc
Q 017240 204 SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---SYIPV-------G----GSLPNT 268 (375)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p~-------~----~~~~~~ 268 (375)
.|++++ ++.+.. .+++.+. .+.+|.||+|+|++.+......+. .++.. . ......
T Consensus 203 ~gv~~~~~~~v~~---------~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~ 272 (457)
T PRK11749 203 LGVEIRTNTEVGR---------DITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPV 272 (457)
T ss_pred cCCEEEeCCEECC---------ccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCC
Confidence 899998 666521 1223333 378999999999864333222111 11110 0 011125
Q ss_pred CCCEEEEccCCCCC
Q 017240 269 EQRNLAFGAAASMV 282 (375)
Q Consensus 269 ~~~v~liGdaa~~~ 282 (375)
++++++||++..++
T Consensus 273 g~~VvViGgG~~g~ 286 (457)
T PRK11749 273 GKRVVVIGGGNTAM 286 (457)
T ss_pred CCeEEEECCCHHHH
Confidence 78999999875433
No 157
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.19 E-value=9.4e-10 Score=109.08 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=110.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|+.|+.+|..|++.|.+|+|||+.......
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999986432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-c-------cccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-L-------EYEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~-------~~~~~~~ 258 (375)
. ...+.+.+.+.+++.||+++ ++.|+++..+++ .+.+.+.++ ++.+|.||+|+|..+... . ...+...
T Consensus 197 ~-~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~-~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~ 273 (441)
T PRK08010 197 E-DRDIADNIATILRDQGVDIILNAHVERISHHEN-QVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGA 273 (441)
T ss_pred c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCc
Confidence 1 12456677888888999999 999999987654 456666665 689999999999876542 1 1123344
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+.....+ +.++.++..+++.+.
T Consensus 274 i~vd~~~~Ts~~~IyA~GD~~~~~~~~-----~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 274 IVVDKYLHTTADNIWAMGDVTGGLQFT-----YISLDDYRIVRDELL 315 (441)
T ss_pred EEECCCcccCCCCEEEeeecCCCccch-----hHHHHHHHHHHHHHc
Confidence 555555555568999999998866555 677788877777764
No 158
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.19 E-value=1e-10 Score=116.49 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=88.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHH-HhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEF-RDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
+|+||||||+|+++|..|++.|.+|+|||++...+ -+.|+.+ +.+ +...+-....+. ....+....... ...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~~~~~---~~~ 77 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKA-NHFGITLPNGSI---SID 77 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHH-HhcCccccCCCC---ccC
Confidence 79999999999999999999999999999875433 2445433 111 110000000000 000000000000 000
Q ss_pred ce-ee-cHHH----HHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCccc--ccccC
Q 017240 185 YG-RV-SRHL----LHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKL--LEYEE 255 (375)
Q Consensus 185 ~~-~v-~~~~----l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~--~~~~~ 255 (375)
+. .. .... +.+.....+++.|++++..++..++. . .+.|...++ .++++|.||+|||+.+..+ .+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~-~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~ 154 (458)
T PRK06912 78 WKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--H-RVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--C-EEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence 00 00 0111 22233344556789998666665542 2 456666555 4799999999999876322 11111
Q ss_pred ceeeec--CCCCCccCCCEEEEccCCCCC
Q 017240 256 WSYIPV--GGSLPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 256 ~~~~p~--~~~~~~~~~~v~liGdaa~~~ 282 (375)
..++.. ...+...++++++||++..++
T Consensus 155 ~~v~~~~~~~~~~~~~~~vvIIGgG~iG~ 183 (458)
T PRK06912 155 KWIINSKHAMSLPSIPSSLLIVGGGVIGC 183 (458)
T ss_pred CeEEcchHHhCccccCCcEEEECCCHHHH
Confidence 122221 112234467999999885433
No 159
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.18 E-value=1.2e-10 Score=119.55 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=33.2
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 104 ~~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
+..+|||+|||+||+|.++|+.+++.|.+|+|||++
T Consensus 113 ~~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 113 SDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 345799999999999999999999999999999975
No 160
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=1.1e-09 Score=108.49 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=103.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||++|+.+|..|++.|.+|+|||+.......
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------------------------------ 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------------------------------
Confidence 47999999999999999999999999999987532111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-ccc-------cCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEY-------EEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~-------~~~~~ 258 (375)
. ...+...+.+.+++.|++++ ++.|+++..+++ .+.+.. ++.++.+|.||+|+|..+..- ... .....
T Consensus 196 ~-~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~-~v~v~~-~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~ 272 (438)
T PRK07251 196 E-EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGD-QVLVVT-EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGA 272 (438)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCC-EEEEEE-CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCc
Confidence 0 12355566777888999999 999999987554 444444 456899999999999776432 111 22233
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++++++||.++..... +.++..+..++..+.
T Consensus 273 i~vd~~~~t~~~~IyaiGD~~~~~~~~-----~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 273 IKVDDYCQTSVPGVFAVGDVNGGPQFT-----YISLDDFRIVFGYLT 314 (438)
T ss_pred EEECCCcccCCCCEEEeeecCCCcccH-----hHHHHHHHHHHHHHc
Confidence 445555555578999999987543332 566666666655543
No 161
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.18 E-value=3.1e-10 Score=110.97 Aligned_cols=136 Identities=23% Similarity=0.219 Sum_probs=83.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCC-------------cCcHHHHHhcCCc-hhhh---hhcc--cceE
Q 017240 111 VVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-------------GVWEDEFRDLGLE-GCIE---HVWR--DTVV 171 (375)
Q Consensus 111 vIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~-------------g~~~~~l~~~g~~-~~~~---~~~~--~~~~ 171 (375)
+|||||++|+++|+.|++.|++|+|+|+....+... ....+.....+-. .... ..+. +...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999987544211 0111111111110 0000 0000 0000
Q ss_pred EeCCC-CCe---eecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCC
Q 017240 172 YIDED-EPI---LIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 172 ~~~~~-~~~---~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
++... ... ..+..|. .-....+.+.|.+.+++.|++++ ++.|+++..+++ .+.|+++ +.++.+|.||+|+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~~v~~~-~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN-GFGVETS-GGEYEADKVILATGG 158 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-eEEEEEC-CcEEEcCEEEECCCC
Confidence 00000 000 0011111 11346788899999999999999 999999977655 5677774 557999999999998
Q ss_pred CCc
Q 017240 246 ASG 248 (375)
Q Consensus 246 ~s~ 248 (375)
++.
T Consensus 159 ~s~ 161 (400)
T TIGR00275 159 LSY 161 (400)
T ss_pred ccc
Confidence 763
No 162
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.18 E-value=8e-11 Score=117.43 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=84.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcH-HHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWE-DEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
|||+||||||+|+++|..|++.|++|+|||++...+ -++|+.+ ..+.... ...+.......-...... ...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~---~~~~~~~~~~~g~~~~~~---~~~ 74 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAA---EVAHYARKPPFGGLAATV---AVD 74 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHH---HHHHHhhccCcccccCCC---ccC
Confidence 699999999999999999999999999999875333 2345433 1111100 000000000000000000 000
Q ss_pred ce-ee-cHHHHHHH-----HHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCccc--cccc
Q 017240 185 YG-RV-SRHLLHEE-----LLRRCVESGVSYLSSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKL--LEYE 254 (375)
Q Consensus 185 ~~-~v-~~~~l~~~-----L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~--~~~~ 254 (375)
+. .+ ....+... +.+.+++.||+++...+..++ . .+|++.+| ..+.+|.||+|||+.+..+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~---~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~ 149 (463)
T TIGR02053 75 FGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--P---KTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK 149 (463)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--C---CEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcc
Confidence 00 01 11122222 334566789999855554432 2 24555555 3689999999999765432 1111
Q ss_pred CceeeecCCC--CCccCCCEEEEccCC
Q 017240 255 EWSYIPVGGS--LPNTEQRNLAFGAAA 279 (375)
Q Consensus 255 ~~~~~p~~~~--~~~~~~~v~liGdaa 279 (375)
...++..... ....++++++||.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vvIIGgG~ 176 (463)
T TIGR02053 150 EAGYLTSEEALALDRIPESLAVIGGGA 176 (463)
T ss_pred cCceECchhhhCcccCCCeEEEECCCH
Confidence 2222221111 122357899999874
No 163
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=4.2e-10 Score=114.70 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=85.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCcH-------------HHHHh---cC--C--ch
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVWE-------------DEFRD---LG--L--EG 160 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~~-------------~~l~~---~g--~--~~ 160 (375)
.++||||||+|.||++||+.+++.|.+|+||||......+ .|++. ...++ .+ + +.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 4589999999999999999999999999999998543211 11110 00110 00 1 00
Q ss_pred hhh----------hhcccceEEeCCCC-C-e---ee-cCCce------eecHHHHHHHHHHHHHHCCceEE-EEEEEEEE
Q 017240 161 CIE----------HVWRDTVVYIDEDE-P-I---LI-GRAYG------RVSRHLLHEELLRRCVESGVSYL-SSKVESIT 217 (375)
Q Consensus 161 ~~~----------~~~~~~~~~~~~~~-~-~---~~-~~~~~------~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~ 217 (375)
.+. .......+.++... . . .. +..+. .-....+...|.+.+.+.||+++ ++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 000 00111112221110 0 0 00 00010 11245678888888888899999 99999999
Q ss_pred EcCCceEEEEec---CC--eEEecCEEEEccCCCCc
Q 017240 218 ESTSGHRLVACE---HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 218 ~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~ 248 (375)
.+++.+++|... ++ ..+.|+.||+|||++..
T Consensus 164 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 164 TDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred EECCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence 876545556543 33 36889999999998764
No 164
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.18 E-value=5.5e-10 Score=111.55 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=84.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC--C-CC---CCcCc----------------HHHHHh----cC-C-
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--F-TN---NYGVW----------------EDEFRD----LG-L- 158 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~--~-~~---~~g~~----------------~~~l~~----~g-~- 158 (375)
++||||||+|++|+++|+.|++.|.+|+||||... . +. ..|+. .+.++. .+ .
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 48999999999999999999999999999999763 1 11 11110 011111 11 0
Q ss_pred chhhhh----------hc-ccceEEeCCCCCeee--cCC--ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc
Q 017240 159 EGCIEH----------VW-RDTVVYIDEDEPILI--GRA--YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG 222 (375)
Q Consensus 159 ~~~~~~----------~~-~~~~~~~~~~~~~~~--~~~--~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~ 222 (375)
.....+ .| ....+.+........ ... +..-....+...|.+.+++.|++++ +++|+++..+++.
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~ 163 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGR 163 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe
Confidence 000000 00 011111110000000 000 0001145688889999999999999 9999999876554
Q ss_pred eEEEEec--CC--eEEecCEEEEccCCCCc
Q 017240 223 HRLVACE--HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 223 ~~~V~~~--~g--~~i~a~~vI~A~G~~s~ 248 (375)
++.|.+. ++ ..+.++.||+|+|.+..
T Consensus 164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 164 FVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred EEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 5556552 23 46899999999998754
No 165
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.18 E-value=1.2e-09 Score=109.29 Aligned_cols=150 Identities=22% Similarity=0.243 Sum_probs=105.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|+|||+.+.....
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------ 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence 58999999999999999999999999999987532111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEc-CCceEEEEecCC--eEEecCEEEEccCCCCccc-cccc------Cc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVACEHD--MIVPCRLATVASGAASGKL-LEYE------EW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~-~~~~------~~ 256 (375)
. ...+.+.+.+.+++.||+++ ++.|+.+... +++...+.+.+| +++.+|.||+|+|..+... +... ..
T Consensus 219 ~-~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~ 297 (472)
T PRK05976 219 E-DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEG 297 (472)
T ss_pred C-CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecC
Confidence 1 12456677777888999999 9999999752 332334445556 4799999999999776442 1111 12
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
..+.+...+....++++++||.+..... ...|..+|..++..|.
T Consensus 298 g~i~Vd~~l~ts~~~IyAiGD~~~~~~~-----~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 298 GFIQIDDFCQTKERHIYAIGDVIGEPQL-----AHVAMAEGEMAAEHIA 341 (472)
T ss_pred CEEEECCCcccCCCCEEEeeecCCCccc-----HHHHHHHHHHHHHHHc
Confidence 2334444444456799999999864322 3677888888877764
No 166
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=1.3e-09 Score=108.55 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=105.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|+|+++.......
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------ 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------ 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence 47999999999999999999999999999987432110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCccc-ccc-------cCce
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKL-LEY-------EEWS 257 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~-~~~-------~~~~ 257 (375)
. ..++.+.+.+.+++.|++++ ++.|+.++.++. .+.+...++ .++.+|.||+|+|..+... ... ....
T Consensus 209 ~-d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~-~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g 286 (458)
T PRK06912 209 E-DEDIAHILREKLENDGVKIFTGAALKGLNSYKK-QALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG 286 (458)
T ss_pred c-cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCC-EEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC
Confidence 1 12466677778888999999 999999976554 344443322 4799999999999776542 111 1122
Q ss_pred eeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 258 YIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 258 ~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||......- ...|..++..++..+.
T Consensus 287 -i~Vd~~~~ts~~~VyA~GD~~~~~~l-----a~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 287 -ISVNEHMQTNVPHIYACGDVIGGIQL-----AHVAFHEGTTAALHAS 328 (458)
T ss_pred -EEeCCCeecCCCCEEEEeecCCCccc-----HHHHHHHHHHHHHHHc
Confidence 44444444556799999999864332 2678888888887764
No 167
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.17 E-value=1.2e-09 Score=112.46 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=85.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC-----------cHHHHHh-----cCC--chhhh
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV-----------WEDEFRD-----LGL--EGCIE 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~-----------~~~~l~~-----~g~--~~~~~ 163 (375)
++||+|||+|.||++||+++++.|.+|+||||......+ .|+ +...+++ -++ ++.+.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 489999999999999999999999999999998643311 111 1111111 111 00000
Q ss_pred ----------hhcccceEEeCCCCC--e---eec-------------CC-c-eeecHHHHHHHHHHHHHHCCceEE-EEE
Q 017240 164 ----------HVWRDTVVYIDEDEP--I---LIG-------------RA-Y-GRVSRHLLHEELLRRCVESGVSYL-SSK 212 (375)
Q Consensus 164 ----------~~~~~~~~~~~~~~~--~---~~~-------------~~-~-~~v~~~~l~~~L~~~~~~~gv~i~-~~~ 212 (375)
.......+.++.... . ..+ +. + +.-....+...|.+.+.+.||+++ ++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 000111111211000 0 000 00 0 011356788899998888999999 999
Q ss_pred EEEEEEc-CCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 213 VESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 213 v~~i~~~-~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
++++..+ ++.+.+|.. .+| ..+.|+.||+|||++...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 9998776 343555543 345 468999999999987643
No 168
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.17 E-value=5.2e-10 Score=111.56 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=85.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC----CCcC---------cHHHHHh-----cCC--chhhh----
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN----NYGV---------WEDEFRD-----LGL--EGCIE---- 163 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~----~~g~---------~~~~l~~-----~g~--~~~~~---- 163 (375)
+||+|||+|+||++||+.+++.|.+|+||||.....+ ..|+ +...+.+ -++ +..+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999753321 1121 0111111 011 11110
Q ss_pred ------hhcccceEEeCCCCC---eeecCCc--eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCe
Q 017240 164 ------HVWRDTVVYIDEDEP---ILIGRAY--GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM 232 (375)
Q Consensus 164 ------~~~~~~~~~~~~~~~---~~~~~~~--~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~ 232 (375)
..+....+.++.... ..+.+.+ .......+.+.|.+.+++.|++++...++++..+++..+.|.+ ++.
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~ 160 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGE 160 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCE
Confidence 011111111111100 0000000 0113457888999999999999984478888765553455655 456
Q ss_pred EEecCEEEEccCCCCccc
Q 017240 233 IVPCRLATVASGAASGKL 250 (375)
Q Consensus 233 ~i~a~~vI~A~G~~s~~~ 250 (375)
.+.++.||+|||+++...
T Consensus 161 ~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 161 LLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEeCeEEECCCcCcCCC
Confidence 899999999999988654
No 169
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.17 E-value=1.9e-10 Score=114.66 Aligned_cols=164 Identities=20% Similarity=0.263 Sum_probs=85.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHH-HHHh-cCCchhhhhhcccceEEeCCCCCeeecC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED-EFRD-LGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~-~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
|||+||||||+|+++|..|++.|.+|+|||+....+ .++|+.+. .+.. ..+-..... .....+..... ..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~-~~~~g~~~~~~-----~~ 75 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH-AKDYGIEVENV-----SV 75 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHH-HHhcCCCCCCC-----cC
Confidence 899999999999999999999999999999943222 13343221 1110 000000000 00000000000 00
Q ss_pred Cceee-cH-----HHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCcccc---cc
Q 017240 184 AYGRV-SR-----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKLL---EY 253 (375)
Q Consensus 184 ~~~~v-~~-----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~~~---~~ 253 (375)
.+..+ .+ ..+...+...+++.|++++...+..+. .. .+.|...+| .++++|.||+|||+.+..+. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~-~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~ 152 (461)
T TIGR01350 76 DWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PG-TVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDF 152 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 00000 00 112233344556679999855555443 22 466666555 57999999999997653321 11
Q ss_pred cCceeeecC--CCCCccCCCEEEEccCCC
Q 017240 254 EEWSYIPVG--GSLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 254 ~~~~~~p~~--~~~~~~~~~v~liGdaa~ 280 (375)
....++... ......++++++||.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~vvViGgG~~ 181 (461)
T TIGR01350 153 DGEVVITSTGALNLKEVPESLVIIGGGVI 181 (461)
T ss_pred CCceEEcchHHhccccCCCeEEEECCCHH
Confidence 111111111 111234678999997753
No 170
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.16 E-value=1.1e-10 Score=116.64 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=87.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCcEEEECCC--------CCCC---CCCcCcHH-HHHhcC-CchhhhhhcccceE
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD--------LPFT---NNYGVWED-EFRDLG-LEGCIEHVWRDTVV 171 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~-G~~V~liE~~--------~~~~---~~~g~~~~-~l~~~g-~~~~~~~~~~~~~~ 171 (375)
..|||+||||||+|..+|+.+++. |.+|+|||++ ..++ -++|+.+. .|-... +.....+. ....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~-~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRES-AGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHh-hccCe
Confidence 359999999999999999999997 9999999973 2233 35666432 221110 00000000 00011
Q ss_pred EeCCCCCeeecCCce-ee-cHH----HHHHHHHHHHHH-CCceEEEEEEEEEEEcCCceEEEEec---C---CeEEecCE
Q 017240 172 YIDEDEPILIGRAYG-RV-SRH----LLHEELLRRCVE-SGVSYLSSKVESITESTSGHRLVACE---H---DMIVPCRL 238 (375)
Q Consensus 172 ~~~~~~~~~~~~~~~-~v-~~~----~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~~~~~V~~~---~---g~~i~a~~ 238 (375)
..+.... ...+. .+ ... .+...+.+.+++ .||+++......+. +. .+.|... + ++++.+|.
T Consensus 81 ~~~~~~~---~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~-~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 81 EFDRSSV---KANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KN-VVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred eccCCcc---ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CC-EEEEeeccCCCCCcceEEECCE
Confidence 1110000 00010 00 011 233444445555 49999855544333 22 4555431 1 24799999
Q ss_pred EEEccCCCCcccccccCce-eeecC--CCCCccCCCEEEEccCCCCCC
Q 017240 239 ATVASGAASGKLLEYEEWS-YIPVG--GSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 239 vI~A~G~~s~~~~~~~~~~-~~p~~--~~~~~~~~~v~liGdaa~~~~ 283 (375)
||+|||+.+..+ +..+.. .+... ..+...++++++||++..+++
T Consensus 155 lIIATGs~p~~p-~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E 201 (486)
T TIGR01423 155 ILLATGSWPQML-GIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVE 201 (486)
T ss_pred EEEecCCCCCCC-CCCChhheechhhhhccccCCCeEEEECCCHHHHH
Confidence 999999875332 221110 11111 112234678999998754433
No 171
>PRK14727 putative mercuric reductase; Provisional
Probab=99.16 E-value=4.1e-10 Score=112.74 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=85.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcHH-HHHhcCCchhhhhhcccce-EEeCCCCCee
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWED-EFRDLGLEGCIEHVWRDTV-VYIDEDEPIL 180 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~~-~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~ 180 (375)
..|||+||||||+|+++|..|++.|.+|+|||++..++. +.|+++. .+-... ...+...... .-+....+ .
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a---~~~~~~~~~~~~g~~~~~~-~ 90 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAA---QLAHQQRSNPFDGVEAVAP-S 90 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHH---HHHHHHhhccccCcccCCC-c
Confidence 459999999999999999999999999999998754442 3454332 111100 0000000000 00000000 0
Q ss_pred ecCCceee--cHHHHHHH-----HHHHHHHC-CceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCccc
Q 017240 181 IGRAYGRV--SRHLLHEE-----LLRRCVES-GVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 181 ~~~~~~~v--~~~~l~~~-----L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~ 250 (375)
. .+..+ ........ ..+.++.. |++++...+..+. ++ .+.|.+.+| .++.+|.||+|||+.+..+
T Consensus 91 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~-~v~v~~~~g~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 91 I--DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GN-TLVVRLHDGGERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred c--CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CC-EEEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence 0 00000 00111111 22233333 8998855554433 22 577777776 3699999999999765432
Q ss_pred ccccC---ceeeecCC--CCCccCCCEEEEccCCC
Q 017240 251 LEYEE---WSYIPVGG--SLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 251 ~~~~~---~~~~p~~~--~~~~~~~~v~liGdaa~ 280 (375)
+..+ ..++.... .....++++++||.+..
T Consensus 166 -~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~i 199 (479)
T PRK14727 166 -PIPGLMDTPYWTSTEALFSDELPASLTVIGSSVV 199 (479)
T ss_pred -CCCCcCccceecchHHhccccCCCeEEEECCCHH
Confidence 2111 11111110 11223578999998753
No 172
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=7.1e-10 Score=113.72 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=86.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCc-----------H----HHHHh-cCC--chh
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW-----------E----DEFRD-LGL--EGC 161 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~-----------~----~~l~~-~g~--~~~ 161 (375)
..++||||||||.||++||+++++.|.+|+||||......+ .|+. . +.+.. -++ +..
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 34689999999999999999999999999999997543211 1110 1 11110 011 000
Q ss_pred hh----------hhcccceEEeCC--C-CC--ee---ec------CCce------eecHHHHHHHHHHHHHHCCceEE-E
Q 017240 162 IE----------HVWRDTVVYIDE--D-EP--IL---IG------RAYG------RVSRHLLHEELLRRCVESGVSYL-S 210 (375)
Q Consensus 162 ~~----------~~~~~~~~~~~~--~-~~--~~---~~------~~~~------~v~~~~l~~~L~~~~~~~gv~i~-~ 210 (375)
+. .......+.++. . .. .. +. .++. .-....+...|.+.+++.||+++ +
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~ 169 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIE 169 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEe
Confidence 00 000011111110 0 00 00 00 0000 01245688889998988999999 9
Q ss_pred EEEEEEEEcC-CceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 211 SKVESITEST-SGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 211 ~~v~~i~~~~-~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
+.++++..++ +.+.+|.. .+| ..+.|+.||+|||++...
T Consensus 170 ~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 170 YFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 9999998765 33555543 355 378999999999988654
No 173
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.16 E-value=8.6e-10 Score=109.45 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=109.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|.+.|.+|+++++....... .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------~ 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD-----------------------------------------S 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch-----------------------------------------h
Confidence 47999999999999999999999999999876421100 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc-ccc-----ccCceeee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK-LLE-----YEEWSYIP 260 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~-~~~-----~~~~~~~p 260 (375)
+ ...+.+.+.+.+++.|++++ +++|+++..+++ ...+.++++ ++.+|.||+|+|..+.. ++. ..+...+.
T Consensus 189 ~-~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~ 265 (444)
T PRK09564 189 F-DKEITDVMEEELRENGVELHLNEFVKSLIGEDK-VEGVVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKTLKNGAII 265 (444)
T ss_pred c-CHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCc-EEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccccCCCCEE
Confidence 1 13467778888888999999 999999965433 445555554 79999999999976542 111 12233455
Q ss_pred cCCCCCccCCCEEEEccCCCCCCCCChH-----HHHHHHhhHHHHHHHHH
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVHPATGY-----SVVRSLSEAPNYASAIA 305 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~p~~G~-----Gi~~al~~a~~~a~~i~ 305 (375)
++..+....++|+++||.+...++..+. -...|..+|..+|+.|.
T Consensus 266 vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 266 VDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred ECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 5544555578999999999875544332 12567788888887775
No 174
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.16 E-value=1.9e-09 Score=111.68 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHCCceEE-EEEEEEEEEcCCceEEEE---ec---------------CC--eEEecCEEEEccCCCCccc-cc-----c
Q 017240 201 CVESGVSYL-SSKVESITESTSGHRLVA---CE---------------HD--MIVPCRLATVASGAASGKL-LE-----Y 253 (375)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~V~---~~---------------~g--~~i~a~~vI~A~G~~s~~~-~~-----~ 253 (375)
+.+.||+++ ++.++++..++++ +.++ +. +| .++.+|.||+|.|..+... .. .
T Consensus 371 a~~eGV~i~~~~~~~~i~~~~~~-~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~ 449 (652)
T PRK12814 371 ALAEGVSLRELAAPVSIERSEGG-LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGT 449 (652)
T ss_pred HHHcCCcEEeccCcEEEEecCCe-EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccc
Confidence 345799998 8888887655442 2221 11 12 3689999999999654321 11 1
Q ss_pred cCceeeecCC-CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 254 EEWSYIPVGG-SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 254 ~~~~~~p~~~-~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
..+..+.+.. ......++|+++||.....+ -+..|+.+|..+|..|..+|.+..
T Consensus 450 ~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 450 SRNGTVKVDPETLQTSVAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred cCCCcEeeCCCCCcCCCCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2233444443 23344678999999875432 347899999999999999998654
No 175
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.15 E-value=6.3e-10 Score=110.25 Aligned_cols=140 Identities=25% Similarity=0.340 Sum_probs=84.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEECCCCCCCCCC-----cCc---HHHHHhcCCchh------------------
Q 017240 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNY-----GVW---EDEFRDLGLEGC------------------ 161 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~~~~~~~-----g~~---~~~l~~~g~~~~------------------ 161 (375)
||||||+|.+|+++|+.++++| .+|+||||....+.+. +++ .+..+..++++.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 9999999986543211 110 011111111110
Q ss_pred -hhh----------hc-c-cceEEeCC-----CC--CeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC
Q 017240 162 -IEH----------VW-R-DTVVYIDE-----DE--PILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST 220 (375)
Q Consensus 162 -~~~----------~~-~-~~~~~~~~-----~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~ 220 (375)
+.+ .| . ........ .. +..+....+......+.+.|.+.+++.|++++ ++.|+++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 000 00 0 00010100 00 00000001123456788999999999999999 99999998764
Q ss_pred C-ceEEEEe--cCCe--EEecCEEEEccCCCCc
Q 017240 221 S-GHRLVAC--EHDM--IVPCRLATVASGAASG 248 (375)
Q Consensus 221 ~-~~~~V~~--~~g~--~i~a~~vI~A~G~~s~ 248 (375)
+ .++.|.+ .++. .+.++.||+|+|.++.
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3 3444443 3443 4789999999998876
No 176
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.15 E-value=2.8e-10 Score=113.50 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=90.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHH-H-HHhcCCchhhhhhcccceEEeCCCCCeeecC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED-E-FRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~-~-l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
.||+||||||+|+.+|..|++.|.+|+|||++...+ .++|+.+. . +....+.....+. ....+..+.........
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~-~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA-AELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHH-HhCCcccccCcccccCH
Confidence 389999999999999999999999999999875333 24455321 1 1110000000000 00000000000000000
Q ss_pred Cc--eeec--HHHHHHHHHHHHHHCCceEEEEEEEEEE--EcCCceEEEEecCCe--EEecCEEEEccCCCCccccc--c
Q 017240 184 AY--GRVS--RHLLHEELLRRCVESGVSYLSSKVESIT--ESTSGHRLVACEHDM--IVPCRLATVASGAASGKLLE--Y 253 (375)
Q Consensus 184 ~~--~~v~--~~~l~~~L~~~~~~~gv~i~~~~v~~i~--~~~~~~~~V~~~~g~--~i~a~~vI~A~G~~s~~~~~--~ 253 (375)
.. ..++ ...+.+.+.+.+++.||+++...++.+. .+.+ .+.|++.+|. ++.+|.||+|||+.+..+.. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~-~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPH-RVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCC-EEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 00 0000 0112344556677789999966666644 2333 5677777774 79999999999987643211 1
Q ss_pred cCceeeecC--CCCCccCCCEEEEccCCC
Q 017240 254 EEWSYIPVG--GSLPNTEQRNLAFGAAAS 280 (375)
Q Consensus 254 ~~~~~~p~~--~~~~~~~~~v~liGdaa~ 280 (375)
....++... ......++++++||.+..
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~i 188 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVT 188 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHH
Confidence 111122211 111234678999997753
No 177
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.15 E-value=1.7e-09 Score=107.51 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=106.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..|++.|.+|+||++.+.....
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------ 207 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------------------------------ 207 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------------------------------
Confidence 47999999999999999999999999999976432110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
++ .++...+.+.. +.|++++ ++.|+.+..+++ .+.|++.+|+++.+|.||+|+|..+... +. ..+...
T Consensus 208 ~d-~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~ 284 (452)
T TIGR03452 208 LD-EDISDRFTEIA-KKKWDIRLGRNVTAVEQDGD-GVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGR 284 (452)
T ss_pred cC-HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCC-eEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCc
Confidence 11 12333444333 4689999 999999987655 4667777777899999999999776442 11 123344
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+...... +.|.+++..+++.|.
T Consensus 285 i~vd~~~~Ts~~~IyA~GD~~~~~~l~-----~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 285 IKVDEYGRTSARGVWALGDVSSPYQLK-----HVANAEARVVKHNLL 326 (452)
T ss_pred EeeCCCcccCCCCEEEeecccCcccCh-----hHHHHHHHHHHHHhc
Confidence 555555565678999999998744322 567888888888875
No 178
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=1.5e-09 Score=111.02 Aligned_cols=143 Identities=21% Similarity=0.284 Sum_probs=83.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCCCCC-----cC---------cHHHHHh---cC--C-c-hhhh
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY-----GV---------WEDEFRD---LG--L-E-GCIE 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~~~~-----g~---------~~~~l~~---~g--~-~-~~~~ 163 (375)
++||+|||+|.||++||+.+++. |.+|+||||......+. |+ +...+++ .+ + . ..+.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 58999999999999999999987 47999999986533211 11 0011111 00 1 0 0100
Q ss_pred ----------hhcccceEEeCCCCC--e---eec-----CCce--eecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEc
Q 017240 164 ----------HVWRDTVVYIDEDEP--I---LIG-----RAYG--RVSRHLLHEELLRRCVES-GVSYL-SSKVESITES 219 (375)
Q Consensus 164 ----------~~~~~~~~~~~~~~~--~---~~~-----~~~~--~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~ 219 (375)
.......+.++.... . ..+ +.+. .-....+...|.+.+.+. +++++ ++.++++..+
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 163 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD 163 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe
Confidence 000111111211000 0 000 0000 012456778888877764 89999 9999999876
Q ss_pred CCceEEE---EecCC--eEEecCEEEEccCCCCcc
Q 017240 220 TSGHRLV---ACEHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 220 ~~~~~~V---~~~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
++.+.+| ...+| ..+.|+.||+|||+++..
T Consensus 164 ~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 164 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 6544443 33455 478999999999988754
No 179
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.15 E-value=8.4e-10 Score=113.43 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=85.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC-----------cHHHHHh-----cCC--chhh
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV-----------WEDEFRD-----LGL--EGCI 162 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~-----------~~~~l~~-----~g~--~~~~ 162 (375)
.++||+|||+|.||++||+++++.|.+|+||||......+ .|+ +...+.+ -++ ++.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 3589999999999999999999999999999998653311 111 1111111 111 0100
Q ss_pred h----------hhcccceEEeCCCC--Cee---ecC---------Cce-e-----ecHHHHHHHHHHHHHHCCceEE-EE
Q 017240 163 E----------HVWRDTVVYIDEDE--PIL---IGR---------AYG-R-----VSRHLLHEELLRRCVESGVSYL-SS 211 (375)
Q Consensus 163 ~----------~~~~~~~~~~~~~~--~~~---~~~---------~~~-~-----v~~~~l~~~L~~~~~~~gv~i~-~~ 211 (375)
. .......+.++... ... .+. ... . -....+...|.+.+++.||+++ ++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 0 00011111111000 000 000 000 0 1245788999999999999999 99
Q ss_pred EEEEEEE-cCCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 212 KVESITE-STSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 212 ~v~~i~~-~~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
.++++.. +++.+.+|.. .+| ..+.|+.||+|||++...
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999887 3443455543 355 468999999999987643
No 180
>PRK14727 putative mercuric reductase; Provisional
Probab=99.15 E-value=1.8e-09 Score=108.20 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=108.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|+.|+.+|..|++.|.+|+||++..... .
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-~------------------------------------------ 225 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-R------------------------------------------ 225 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-c------------------------------------------
Confidence 479999999999999999999999999998642110 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-ccc-------cCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEY-------EEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~-------~~~~~ 258 (375)
. ...+.+.+.+.+++.||+++ ++.|+.+..+++ .+.+.+.++ ++.+|.||+|+|..+... +.. .+...
T Consensus 226 ~-d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~ 302 (479)
T PRK14727 226 E-DPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-GFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGA 302 (479)
T ss_pred c-hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCC
Confidence 1 12456677788888999999 999999986655 556666665 689999999999876543 111 22334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+..... +..|+.+|..++..|.
T Consensus 303 i~Vd~~~~Ts~~~IyA~GD~~~~~~~-----~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 303 IVVNPAMETSAPDIYAAGDCSDLPQF-----VYVAAAAGSRAGINMT 344 (479)
T ss_pred EEECCCeecCCCCEEEeeecCCcchh-----hhHHHHHHHHHHHHHc
Confidence 44555555556899999999865432 3678888888888775
No 181
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.14 E-value=1.6e-10 Score=115.23 Aligned_cols=33 Identities=48% Similarity=0.736 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
.|||+||||||+|+++|..|++.|++|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 499999999999999999999999999999984
No 182
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.14 E-value=4.5e-10 Score=115.57 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=51.9
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC--CceEEEEe---cCCe--EEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST--SGHRLVAC---EHDM--IVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~~~~V~~---~~g~--~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...|.+.+++.|++++ +++|+++..++ +..+.|++ .++. ++.+|.||+|+|+++..+
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l 299 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEV 299 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHH
Confidence 478999999999999999999999 88999998763 43445554 2332 689999999999997654
No 183
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.14 E-value=8.5e-10 Score=112.79 Aligned_cols=141 Identities=27% Similarity=0.367 Sum_probs=83.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC------------cHHHHHh-----cCCch-hhh--
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV------------WEDEFRD-----LGLEG-CIE-- 163 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~------------~~~~l~~-----~g~~~-~~~-- 163 (375)
||||||+|+||++||+.+++.|.+|+||||....+.+ .|+ +.....+ .++.+ ...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999999999997643210 011 0111111 11110 000
Q ss_pred ---------hhcccceEEeCC--CCCe---eec-----CC-c-eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC
Q 017240 164 ---------HVWRDTVVYIDE--DEPI---LIG-----RA-Y-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS 221 (375)
Q Consensus 164 ---------~~~~~~~~~~~~--~~~~---~~~-----~~-~-~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~ 221 (375)
.......+.++. .... ..+ +. + .......+...|.+.+.+.|++++ ++.|+++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g 160 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG 160 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence 000111111110 0000 000 00 0 011245678888888888899999 999999987665
Q ss_pred ceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 222 GHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 222 ~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
.+.+|.. .+| ..+.|+.||+|||+++..
T Consensus 161 ~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 161 RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred EEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 4444433 355 368999999999998744
No 184
>PLN02546 glutathione reductase
Probab=99.14 E-value=2.1e-09 Score=108.99 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=109.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+||++.......
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------ 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence 48999999999999999999999999999976432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
+ ...+...+.+.+++.||+++ ++.++.+...+++.+.+.+.++....+|.||+|+|..+... +. ..+...
T Consensus 291 ~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~ 369 (558)
T PLN02546 291 F-DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGA 369 (558)
T ss_pred c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCc
Confidence 1 12456677778888999999 99999997654434556666654455899999999776542 11 122344
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+...... ..|+.++..+++.|.
T Consensus 370 I~VD~~l~Ts~p~IYAaGDv~~~~~l~-----~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 370 IEVDEYSRTSVPSIWAVGDVTDRINLT-----PVALMEGGALAKTLF 411 (558)
T ss_pred EeECCCceeCCCCEEEeeccCCCcccH-----HHHHHHHHHHHHHHc
Confidence 555555555678999999998765443 678888888887774
No 185
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.2e-10 Score=109.45 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=81.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCc--------HHHHHhc---C--C-c-hhhh---
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW--------EDEFRDL---G--L-E-GCIE--- 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~--------~~~l~~~---g--~-~-~~~~--- 163 (375)
++||||||+|.||++||+.++ .|.+|+||||....+.+ .|++ ...+++. + . . ..+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 589999999999999999985 69999999998654321 1111 1111110 1 0 0 0000
Q ss_pred -------hhcccceEEeCCCC-Ceeec----CCc------eeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCce
Q 017240 164 -------HVWRDTVVYIDEDE-PILIG----RAY------GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGH 223 (375)
Q Consensus 164 -------~~~~~~~~~~~~~~-~~~~~----~~~------~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~ 223 (375)
..+....+.++... ...+. ... .......+.+.|.+.+++ .||+++ ++.|+++..+++.+
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v 162 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTC 162 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEE
Confidence 00001111111100 00000 000 012345678888888875 599999 99999998765544
Q ss_pred EEEE-ecCC--eEEecCEEEEccCCCCc
Q 017240 224 RLVA-CEHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 224 ~~V~-~~~g--~~i~a~~vI~A~G~~s~ 248 (375)
+.|. ..++ .++.|+.||+|||+.+.
T Consensus 163 ~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 163 IGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4543 2334 26899999999998764
No 186
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.14 E-value=7.2e-10 Score=107.72 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=53.6
Q ss_pred CceeecHHHHHHHHHHHHHHCCc-eEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 184 AYGRVSRHLLHEELLRRCVESGV-SYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 184 ~~~~v~~~~l~~~L~~~~~~~gv-~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
..+.+++..+.+.|.+.+.+.|+ .+. ++.+..+.... +.+.|.+.+|. +.++.||+|+|+++..+
T Consensus 149 ~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l 215 (387)
T COG0665 149 TGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGEL 215 (387)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence 33578899999999999999994 555 88888887753 36889999885 99999999999997653
No 187
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.13 E-value=7.9e-10 Score=110.94 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=84.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC---------cHHHHH----h-cCC-chhhh---
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV---------WEDEFR----D-LGL-EGCIE--- 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~---------~~~~l~----~-~g~-~~~~~--- 163 (375)
++||+|||+|+||++||+.+++.|. |+||||......+ .|+ +...++ . .++ +....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 9999998543211 111 011111 1 011 10000
Q ss_pred --------hhcccceEEeCCCCC--ee----ecCCc------eeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCC
Q 017240 164 --------HVWRDTVVYIDEDEP--IL----IGRAY------GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTS 221 (375)
Q Consensus 164 --------~~~~~~~~~~~~~~~--~~----~~~~~------~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~ 221 (375)
.......+.++.... .. .+..+ +......+...|.+.+++ .||+++ ++.|+++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 011111111211100 00 00001 112456788999999987 699999 999999987655
Q ss_pred ceEEEEecC-C--eEEecCEEEEccCCCCcc
Q 017240 222 GHRLVACEH-D--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 222 ~~~~V~~~~-g--~~i~a~~vI~A~G~~s~~ 249 (375)
....|.+.+ + ..+.++.||+|||+++..
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 344454433 2 468999999999998864
No 188
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.13 E-value=1.8e-09 Score=114.29 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.++|||||+.|+.+|..|++.|.+|+|||..+..... .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------------------------------------~ 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------------------------------------Q 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------h
Confidence 36999999999999999999999999999976422100 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC-CceEEEEecCCeEEecCEEEEccCCCCcccc-c-----ccCceee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACEHDMIVPCRLATVASGAASGKLL-E-----YEEWSYI 259 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~-----~~~~~~~ 259 (375)
++ ....+.+.+.+++.||+++ ++.++++..++ +....|.+.+|+++.+|.||+|+|..+..-+ . ..+...+
T Consensus 185 ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I 263 (847)
T PRK14989 185 LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGI 263 (847)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcE
Confidence 11 2355677778888999999 99999997643 2245677888989999999999998765421 1 1233456
Q ss_pred ecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 260 PVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 260 p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
.++..+....++|+++||.+...+...|. +..+...|..+|+.|.
T Consensus 264 ~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl-~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 264 VINDSCQTSDPDIYAIGECASWNNRVFGL-VAPGYKMAQVAVDHLL 308 (847)
T ss_pred EECCCCcCCCCCEEEeecceeEcCccccc-HHHHHHHHHHHHHHhc
Confidence 66666666678999999999876655432 2455666666666653
No 189
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.12 E-value=1.5e-09 Score=107.52 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=104.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|+|+++.......
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------------------------------
Confidence 47999999999999999999999999999987432111
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-c-----cccCceeee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-L-----EYEEWSYIP 260 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~-----~~~~~~~~p 260 (375)
. ..++.+.+.+.+++.||+++ ++.|+++.. . .|++.+|.++.+|.||+|+|..+..- . ...+...++
T Consensus 187 ~-d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~---~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~ 260 (438)
T PRK13512 187 M-DADMNQPILDELDKREIPYRLNEEIDAING--N---EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIP 260 (438)
T ss_pred c-CHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C---EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEE
Confidence 1 12456677778888999999 999999853 2 46666777899999999999776431 1 122334455
Q ss_pred cCCCCCccCCCEEEEccCCCCCCCCChH-----HHHHHHhhHHHHHHHHH
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVHPATGY-----SVVRSLSEAPNYASAIA 305 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~p~~G~-----Gi~~al~~a~~~a~~i~ 305 (375)
++..+....++|+++||.+...+...+. -...|.+.|..+++.|.
T Consensus 261 Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 261 VNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred ECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 5555555568999999998643221111 11335566766666664
No 190
>PRK14694 putative mercuric reductase; Provisional
Probab=99.12 E-value=3.3e-09 Score=105.98 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=106.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|++|+.+|..|++.|.+|+|+++..... .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-~------------------------------------------ 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-Q------------------------------------------ 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-C------------------------------------------
Confidence 479999999999999999999999999998642111 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc-cc------cCceee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL-EY------EEWSYI 259 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~~------~~~~~~ 259 (375)
. ...+.+.+.+.+++.||+++ ++.|+.+..+++ .+.+.+.++ ++.+|.||+|+|..+.... .. .+...+
T Consensus 216 ~-~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i 292 (468)
T PRK14694 216 E-DPAVGEAIEAAFRREGIEVLKQTQASEVDYNGR-EFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292 (468)
T ss_pred C-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeE
Confidence 1 12456777888888999999 899999976654 455666555 7999999999998765431 11 122334
Q ss_pred ecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 260 PVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 260 p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
.++..+....++|+++||.+..... +..|..+|..+|..|.
T Consensus 293 ~vd~~~~Ts~~~IyA~GD~~~~~~~-----~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 293 RIDEHLQTTVSGIYAAGDCTDQPQF-----VYVAAAGGSRAAINMT 333 (468)
T ss_pred eeCCCcccCCCCEEEEeecCCCccc-----HHHHHHHHHHHHHHhc
Confidence 4454555566899999999865433 3677788888887764
No 191
>PRK07121 hypothetical protein; Validated
Probab=99.12 E-value=1.5e-09 Score=109.17 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC-ceEEEEec-CC--eEEec-CEEEEccCCCCc
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACE-HD--MIVPC-RLATVASGAASG 248 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~V~~~-~g--~~i~a-~~vI~A~G~~s~ 248 (375)
....+...|.+.+++.|++++ ++.|+++..+++ .++.|... ++ ..+.+ +.||+|+|.++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 356788899999999999999 999999987643 35556543 23 36889 999999998874
No 192
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.9e-09 Score=110.39 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC-CceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
...+...|.+.+.+.|++++ ++.++++..++ +.+.+|.. .+| ..+.++.||+|||+++..
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 45688889898888999999 99999988753 33555543 345 368899999999987643
No 193
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.11 E-value=4.5e-10 Score=112.42 Aligned_cols=171 Identities=22% Similarity=0.156 Sum_probs=88.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC--------CC---CCCcCcHH-HHHhcCCchhhhhhcccceEEeC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--------FT---NNYGVWED-EFRDLGLEGCIEHVWRDTVVYID 174 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~--------~~---~~~g~~~~-~l~~~g~~~~~~~~~~~~~~~~~ 174 (375)
.|||+|||+||+|+.+|+.+++.|.+|+|||+..+ .+ -++|+.+. .+..........+......+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 48999999999999999999999999999997421 22 23455332 11110000000000000000000
Q ss_pred CCCCeeec----CCceeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCc
Q 017240 175 EDEPILIG----RAYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 175 ~~~~~~~~----~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~ 248 (375)
......+. .....+ ..+.+...+.++..||+++......+..+ .+.|...+| .++.+|.||+|||+.+.
T Consensus 82 ~~~~~d~~~~~~~~~~~v--~~~~~~~~~~~~~~~v~~i~G~a~f~~~~---~v~v~~~~g~~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHI--GSLNWGYRVALREKKVNYENAYAEFVDKH---RIKATNKKGKEKIYSAERFLIATGERPR 156 (484)
T ss_pred CCcccCHHHHHHHHHHHH--HHHHHHHHHHHhhCCcEEEEEEEEEcCCC---EEEEeccCCCceEEEeCEEEEecCCCCC
Confidence 00000000 000011 12333444556678999996555544322 455554444 47999999999998653
Q ss_pred ccccccCc--eeeec--CCCCCccCCCEEEEccCCCCCC
Q 017240 249 KLLEYEEW--SYIPV--GGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 249 ~~~~~~~~--~~~p~--~~~~~~~~~~v~liGdaa~~~~ 283 (375)
.+ +..+. ..+.. -..+...++++++||++..+++
T Consensus 157 ~p-~ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E 194 (484)
T TIGR01438 157 YP-GIPGAKELCITSDDLFSLPYCPGKTLVVGASYVALE 194 (484)
T ss_pred CC-CCCCccceeecHHHhhcccccCCCEEEECCCHHHHH
Confidence 32 21111 11110 0112234678999998864444
No 194
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.11 E-value=2.8e-09 Score=106.47 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=106.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|||+.+.....
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------ 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence 48999999999999999999999999999987533211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC--C--eEEecCEEEEccCCCCcccc-c-------cc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAASGKLL-E-------YE 254 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~--g--~~i~a~~vI~A~G~~s~~~~-~-------~~ 254 (375)
.+ ..+.+.+.+.+++. ++++ ++.|+.+...++ .+.+++.+ + .++.+|.||+|+|..+..-. . ..
T Consensus 213 ~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~ 289 (471)
T PRK06467 213 AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKED-GIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVD 289 (471)
T ss_pred CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCC-EEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceEC
Confidence 11 23556667777777 9999 999999986655 45555433 2 46999999999997765421 1 12
Q ss_pred CceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 255 EWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 255 ~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+...+.++..+....++|+++||.+.... -...|..+|..++..|.
T Consensus 290 ~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~-----la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 290 ERGFIRVDKQCRTNVPHIFAIGDIVGQPM-----LAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCCcEeeCCCcccCCCCEEEehhhcCCcc-----cHHHHHHHHHHHHHHHc
Confidence 33445555555556789999999875321 23678888888888775
No 195
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.11 E-value=3.5e-09 Score=105.68 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=104.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..+++.|.+|+|||+.+.....
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------------------------------ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------------------------------ 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999986432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---C--CeEEecCEEEEccCCCCccc-ccc-------
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---H--DMIVPCRLATVASGAASGKL-LEY------- 253 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~--g~~i~a~~vI~A~G~~s~~~-~~~------- 253 (375)
.+ .++.+.+.+.+++.||+++ ++.|+++..+++ .+.+.+. + ++++.+|.||+|+|..+..- +..
T Consensus 213 ~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~ 290 (466)
T PRK06115 213 TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGAD-GVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLET 290 (466)
T ss_pred CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCC-eEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCccccccee
Confidence 11 2356677778888999999 999999987554 3444332 2 35799999999999765432 111
Q ss_pred cCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 254 EEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 254 ~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
....+ .+........++|+++||.+... ++ .+.|..+|..+++.|.
T Consensus 291 ~~~G~-~vd~~~~Ts~~~IyA~GD~~~~~-~l----a~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 291 DKRGM-LANDHHRTSVPGVWVIGDVTSGP-ML----AHKAEDEAVACIERIA 336 (466)
T ss_pred CCCCE-EECCCeecCCCCEEEeeecCCCc-cc----HHHHHHHHHHHHHHHc
Confidence 12222 23333445567999999998642 22 3778888888888875
No 196
>PTZ00058 glutathione reductase; Provisional
Probab=99.11 E-value=4e-09 Score=106.93 Aligned_cols=155 Identities=13% Similarity=0.151 Sum_probs=109.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||..|+.+|..|++.|.+|+|+|+.......
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------------------------------ 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------------------------------ 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------------------------------
Confidence 47999999999999999999999999999987432211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC-CeEEecCEEEEccCCCCccc-ccc------cCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASGKL-LEY------EEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~-g~~i~a~~vI~A~G~~s~~~-~~~------~~~~~ 258 (375)
++ .++.+.+.+.+++.||+++ ++.|.++..++++.+.+...+ ++++.+|.||+|+|..+..- +.. .+...
T Consensus 276 ~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~ 354 (561)
T PTZ00058 276 FD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGY 354 (561)
T ss_pred CC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCe
Confidence 12 2456677778888999999 999999986543234444433 45799999999999665432 111 12334
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCC-----------------------CChHH------HHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHP-----------------------ATGYS------VVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p-----------------------~~G~G------i~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+...+. .+++. .+.|..+|..+++.|.
T Consensus 355 I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 355 IKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred EEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 55555555667899999999884321 11111 2678888988888875
No 197
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.11 E-value=2.5e-09 Score=112.99 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=110.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..|++.|.+|+|||+.+..... .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~-----------------------------------------~ 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK-----------------------------------------Q 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------h
Confidence 47999999999999999999999999999976422100 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc----cccCceeeecC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL----EYEEWSYIPVG 262 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~----~~~~~~~~p~~ 262 (375)
++ ..+...+.+.+++.||+++ ++.++++..++. ...|++.+|.++.+|.||.|+|..+...+ .+....-+.++
T Consensus 180 ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd 257 (785)
T TIGR02374 180 LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATK-ADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVN 257 (785)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCc-eEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccCCCEEEC
Confidence 11 2345666777788999999 999988875543 56788888989999999999997764421 11111223344
Q ss_pred CCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 263 GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 263 ~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
..+....++|+++||.+...++..|. +..+..+|..+|..|.
T Consensus 258 ~~~~Ts~p~IyA~GD~a~~~~~~~gl-~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 258 DSMQTSDPDIYAVGECAEHNGRVYGL-VAPLYEQAKVLADHIC 299 (785)
T ss_pred CCcccCCCCEEEeeecceeCCccccc-HHHHHHHHHHHHHHhc
Confidence 44555678999999998776654442 3456777887777774
No 198
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1.5e-09 Score=111.11 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=83.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCC---CcEEEECCCCCCCCC-----CcCc-----------HHH----HHh-cCCc-
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLG---LNVGLIGPDLPFTNN-----YGVW-----------EDE----FRD-LGLE- 159 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G---~~V~liE~~~~~~~~-----~g~~-----------~~~----l~~-~g~~- 159 (375)
..++||+|||+|.||++||+.+++.| .+|+||||....+.+ .|++ ... +.. -++.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 34589999999999999999999998 899999998653321 1110 000 000 0110
Q ss_pred -hhhh----------hhcccceEEeCCC-C-Ce---eec-CCcee------ecHHHHHHHHHHHHHH-CCceEE-EEEEE
Q 017240 160 -GCIE----------HVWRDTVVYIDED-E-PI---LIG-RAYGR------VSRHLLHEELLRRCVE-SGVSYL-SSKVE 214 (375)
Q Consensus 160 -~~~~----------~~~~~~~~~~~~~-~-~~---~~~-~~~~~------v~~~~l~~~L~~~~~~-~gv~i~-~~~v~ 214 (375)
..+. ..+....+.++.. . .. ..+ ..+.. -....+.+.|.+.+.+ .||+++ ++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 0000 0111111111110 0 00 000 00100 1234578888888876 689999 99999
Q ss_pred EEEEcCCceEEEE---ecCCe--EEecCEEEEccCCCCc
Q 017240 215 SITESTSGHRLVA---CEHDM--IVPCRLATVASGAASG 248 (375)
Q Consensus 215 ~i~~~~~~~~~V~---~~~g~--~i~a~~vI~A~G~~s~ 248 (375)
++..+++...+|. ..+|. .+.|+.||+|||+.+.
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 9987655344443 23553 6899999999999754
No 199
>PRK13748 putative mercuric reductase; Provisional
Probab=99.10 E-value=3.3e-09 Score=108.44 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=108.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||+.|+.+|..|++.|.+|+||++..... .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~------------------------------------------ 307 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-R------------------------------------------ 307 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-c------------------------------------------
Confidence 479999999999999999999999999998752110 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cc-------ccCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LE-------YEEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~-------~~~~~~ 258 (375)
. ..++.+.+.+.+++.||+++ ++.|+.+..+++ .+.+.+.++ ++.+|.||+|+|..+... +. ..+...
T Consensus 308 ~-d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~ 384 (561)
T PRK13748 308 E-DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDG-EFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGA 384 (561)
T ss_pred c-CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-EEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCC
Confidence 1 12456677788888999999 999999986655 556666665 699999999999776542 11 122234
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+.++..+....++|+++||.+..... +..|+.+|..++..|.
T Consensus 385 i~vd~~~~Ts~~~IyA~GD~~~~~~~-----~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 385 IVIDQGMRTSVPHIYAAGDCTDQPQF-----VYVAAAAGTRAAINMT 426 (561)
T ss_pred EeECCCcccCCCCEEEeeecCCCccc-----hhHHHHHHHHHHHHHc
Confidence 44555555566899999999865432 3677888888888774
No 200
>PRK07846 mycothione reductase; Reviewed
Probab=99.10 E-value=7.6e-10 Score=109.94 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=82.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHH-HHHhc-CCchhhhhhcccceEEeCCCCCeeecC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED-EFRDL-GLEGCIEHVWRDTVVYIDEDEPILIGR 183 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~-~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
|||+||||||+|.++|.. ..|.+|+|||++...+ -++|+.+. .|... .+.....+ .....+... .. ..
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~--~~---~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIRE-AARLGVDAE--LD---GV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHhCCccCC--CC---cC
Confidence 899999999999998876 4699999999875444 35666432 21110 00000000 000000000 00 00
Q ss_pred Cce-eecH-HHHHHHH-----HHH-HHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc--cc
Q 017240 184 AYG-RVSR-HLLHEEL-----LRR-CVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL--EY 253 (375)
Q Consensus 184 ~~~-~v~~-~~l~~~L-----~~~-~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~--~~ 253 (375)
.+. .+++ ....+.+ ... ++..|++++..++..+. +. +|++.+|+++.+|.+|+|||+.+..+. ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~---~V~v~~g~~~~~d~lViATGs~p~~p~i~g~ 148 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PK---TLRTGDGEEITADQVVIAAGSRPVIPPVIAD 148 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CC---EEEECCCCEEEeCEEEEcCCCCCCCCCCCCc
Confidence 000 0111 1111121 222 55679999955555442 22 566667778999999999997664331 11
Q ss_pred cCceeeecC--CCCCccCCCEEEEccCC
Q 017240 254 EEWSYIPVG--GSLPNTEQRNLAFGAAA 279 (375)
Q Consensus 254 ~~~~~~p~~--~~~~~~~~~v~liGdaa 279 (375)
....++... ..+...++++++||++.
T Consensus 149 ~~~~~~~~~~~~~l~~~~~~vvIIGgG~ 176 (451)
T PRK07846 149 SGVRYHTSDTIMRLPELPESLVIVGGGF 176 (451)
T ss_pred CCccEEchHHHhhhhhcCCeEEEECCCH
Confidence 111121111 11223468999999874
No 201
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1.7e-09 Score=111.62 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---CC--eEEecCEEEEccCCCCcc
Q 017240 195 EELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 195 ~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~~ 249 (375)
+.|.+.+++.||+++ ++.|+++..+++.+++|... +| ..+.|+.||+|||+++..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 566667778899999 99999998765545556543 44 368999999999997754
No 202
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.10 E-value=1.4e-09 Score=81.26 Aligned_cols=79 Identities=29% Similarity=0.316 Sum_probs=66.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceee
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRV 188 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 188 (375)
.|+|||||+.|+.+|..|++.|.+|+||++.+.....+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~------------------------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGF------------------------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhc------------------------------------------
Confidence 38999999999999999999999999999886443111
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD 231 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g 231 (375)
...+.+.+.+.+++.||+++ ++.++++..++++ +.|+++||
T Consensus 39 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 39 -DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp -SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred -CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence 23577788888888999999 9999999999885 55888876
No 203
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2e-09 Score=110.27 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC----CceEEEEe---cCCe--EEecCEEEEccCCCCc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITEST----SGHRLVAC---EHDM--IVPCRLATVASGAASG 248 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~----~~~~~V~~---~~g~--~i~a~~vI~A~G~~s~ 248 (375)
...+...|.+.+++.||+++ ++.|+++..++ +.+.+|.. .+|. .+.|+.||+|||+++.
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 46788899999999999999 99999998654 33455543 3453 6899999999999763
No 204
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.10 E-value=3.5e-10 Score=113.65 Aligned_cols=33 Identities=45% Similarity=0.605 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
.|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 489999999999999999999999999999963
No 205
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.10 E-value=1.3e-09 Score=108.80 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=53.1
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe---cCC--eEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHD--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...|.+.+++.|++++ +++|+++..++++.+.|++ .+| .++.|++||+|+|.++..+
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~L 243 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPL 243 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHH
Confidence 578999999999999999999999 9999999876543455543 233 3699999999999998654
No 206
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2.3e-09 Score=109.63 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=85.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC-----------cHHHHHh-----cCC--chhhh
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV-----------WEDEFRD-----LGL--EGCIE 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~-----------~~~~l~~-----~g~--~~~~~ 163 (375)
++||||||+|.||++||+.+++.|.+|+||||......+ .|+ +...+++ -++ ++.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999999999999998543211 011 1111111 011 01000
Q ss_pred ----------hhcccceEEeCCCC--Ce---eecC--------Cce------eecHHHHHHHHHHHHHHCCceEE-EEEE
Q 017240 164 ----------HVWRDTVVYIDEDE--PI---LIGR--------AYG------RVSRHLLHEELLRRCVESGVSYL-SSKV 213 (375)
Q Consensus 164 ----------~~~~~~~~~~~~~~--~~---~~~~--------~~~------~v~~~~l~~~L~~~~~~~gv~i~-~~~v 213 (375)
.......+.++... .. ..+. .+. .-....+...|.+.+.+.|++++ ++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 00011111111100 00 0000 000 01246788889888888999999 9999
Q ss_pred EEEEEc-CCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 214 ESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 214 ~~i~~~-~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
+++..+ ++.+++|.. .+| ..+.|+.||+|||++...
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 999875 343555543 345 368899999999997644
No 207
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=4.9e-09 Score=104.53 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=107.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||+|+.|+.+|..|++.|.+|+|+|+.+.....
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------ 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence 58999999999999999999999999999987532210
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCcccc-c-------ccCc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLL-E-------YEEW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~-~-------~~~~ 256 (375)
. ..++...+.+.+++. ++++ ++.++++..+++..+.++..++ .++.+|.||+|+|..+.... . ..+.
T Consensus 208 ~-d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~ 285 (460)
T PRK06292 208 E-DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDER 285 (460)
T ss_pred h-hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCC
Confidence 1 124566777777778 9999 9999999765432344433333 57999999999997654321 1 1223
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..+.++..+....++|+++||.+....- ...|..+|..++..|..
T Consensus 286 g~i~vd~~~~ts~~~IyA~GD~~~~~~~-----~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 286 GRPVVDEHTQTSVPGIYAAGDVNGKPPL-----LHEAADEGRIAAENAAG 330 (460)
T ss_pred CcEeECCCcccCCCCEEEEEecCCCccc-----hhHHHHHHHHHHHHhcC
Confidence 3445555555567899999999864322 36789999999888864
No 208
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.09 E-value=9.6e-10 Score=93.21 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=78.6
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCcEEEECCCCCC-CCCCcCcHHHHHhcCCchhhhhhcccc-----eEEeCCCCC-
Q 017240 111 VVIGCGPAGLALAAESAKL-----GLNVGLIGPDLPF-TNNYGVWEDEFRDLGLEGCIEHVWRDT-----VVYIDEDEP- 178 (375)
Q Consensus 111 vIIGgG~aGl~aA~~La~~-----G~~V~liE~~~~~-~~~~g~~~~~l~~~g~~~~~~~~~~~~-----~~~~~~~~~- 178 (375)
+|||+||+|++++.+|.+. ..+|+|||+.... +..|.--.....-++.....+..+.+. ..|+.....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999988 4689999996543 222222100111112111111111100 000111100
Q ss_pred -eeecCCceeecHHHHHHHHHHHHHH------CCceEE--EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCC
Q 017240 179 -ILIGRAYGRVSRHLLHEELLRRCVE------SGVSYL--SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 179 -~~~~~~~~~v~~~~l~~~L~~~~~~------~gv~i~--~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
.....+...++|..+-++|.+.+.+ .|+++. ..+|+++...++ .+.|.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~-~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD-GYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC-cEEEEECCCCEEEeCEEEECCCC
Confidence 0011112246666666666654443 366655 889999999887 57888899989999999999994
No 209
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.09 E-value=1.9e-09 Score=107.82 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=53.1
Q ss_pred eeecHHHHHHHHHHHHHHCC-ceEE-EEEEEEEEEcCCceEEEEec---CCe--EEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACE---HDM--IVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~V~~~---~g~--~i~a~~vI~A~G~~s~~~~ 251 (375)
+.++...+.+.|.+.+++.| ++++ +++|+++..++++.+.|++. +|. ++.|++||+|+|+++..+.
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~ 250 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLL 250 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHH
Confidence 36889999999999999886 8999 99999998865544656543 353 6999999999999986653
No 210
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.09 E-value=4.3e-09 Score=101.69 Aligned_cols=156 Identities=20% Similarity=0.252 Sum_probs=108.0
Q ss_pred ccEEEECCCHHHHHHHHHHHH----CC--CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeee
Q 017240 108 LDLVVIGCGPAGLALAAESAK----LG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~----~G--~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
.+|+|||||++|+.+|..|++ .| .+|+|+. .......
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~~------------------------------------ 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPG------------------------------------ 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccccc------------------------------------
Confidence 479999999999999999985 35 4798883 2111100
Q ss_pred cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc-----ccC
Q 017240 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE-----YEE 255 (375)
Q Consensus 182 ~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~-----~~~ 255 (375)
+ ...+...+.+.+++.||+++ ++.++.+.. + .|.+.+|.++.+|.||+|+|..+..... ...
T Consensus 189 ------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~ 256 (364)
T TIGR03169 189 ------F-PAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G---ALILADGRTLPADAILWATGARAPPWLAESGLPLDE 256 (364)
T ss_pred ------C-CHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C---eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCC
Confidence 1 12355677778888999999 889988853 2 4667788899999999999977643322 112
Q ss_pred ceeeecCCCCCc-cCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 256 WSYIPVGGSLPN-TEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 256 ~~~~p~~~~~~~-~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
...+.++..+.. ..++++++||.+...+.....-...|..+|..+|+.|...+++..
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 233444444443 457999999998765432222235689999999999998886543
No 211
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=1.6e-09 Score=110.83 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCC-----CCcC------------cHHHHH----h-cCC--ch
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTN-----NYGV------------WEDEFR----D-LGL--EG 160 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~-----~~g~------------~~~~l~----~-~g~--~~ 160 (375)
++||+|||||+||++||+.+++.| .+|+||||....+. ..|+ +...+. . .++ ++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 479999999999999999999874 89999999864331 1111 111110 0 111 00
Q ss_pred hhh----------hhcccceEEeCCCC-C-e---ee-c----CCce--eecHHHHHHHHHHHHHHCCceEE-EEEEEEEE
Q 017240 161 CIE----------HVWRDTVVYIDEDE-P-I---LI-G----RAYG--RVSRHLLHEELLRRCVESGVSYL-SSKVESIT 217 (375)
Q Consensus 161 ~~~----------~~~~~~~~~~~~~~-~-~---~~-~----~~~~--~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~ 217 (375)
.+. .......+.++... . . .. + +... ......+...|.+.+++.||+++ ++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 000 00011111111100 0 0 00 0 0000 11245788889998888999999 99999998
Q ss_pred EcCCceEEEE---ecCC--eEEecCEEEEccCCCCcc
Q 017240 218 ESTSGHRLVA---CEHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 218 ~~~~~~~~V~---~~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
.+++.+.++. ..+| ..+.|+.||+|||+++..
T Consensus 163 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 163 LEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 7655344443 3355 368999999999998643
No 212
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.08 E-value=1.4e-09 Score=109.67 Aligned_cols=140 Identities=23% Similarity=0.269 Sum_probs=81.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC---------cHHHHHhc-----CC-c-hhhh--
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV---------WEDEFRDL-----GL-E-GCIE-- 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~---------~~~~l~~~-----g~-~-~~~~-- 163 (375)
++||||||+|.||++||+.+++ |.+|+||||......+ .|+ +...+++. ++ + +.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4799999999999999999987 9999999998653311 111 11111111 11 0 0000
Q ss_pred --------hhcccceEEeCCC--CCeee----cCCc-------eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC
Q 017240 164 --------HVWRDTVVYIDED--EPILI----GRAY-------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS 221 (375)
Q Consensus 164 --------~~~~~~~~~~~~~--~~~~~----~~~~-------~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~ 221 (375)
..+....+.++.. ..... +..+ +......+.+.|.+.+. .||+++ ++.|+++..+++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence 0111111112110 00000 0000 11234567788887775 689999 999999976655
Q ss_pred ceEEEEec--CC--eEEecCEEEEccCCCCc
Q 017240 222 GHRLVACE--HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 222 ~~~~V~~~--~g--~~i~a~~vI~A~G~~s~ 248 (375)
....|... +| ..+.|+.||+|||+++.
T Consensus 161 ~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 161 RCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 34455443 33 36899999999998764
No 213
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.1e-09 Score=109.33 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=84.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC-C-CCC----CcC---------cHHHHHhc-----CC-chhhhh
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-F-TNN----YGV---------WEDEFRDL-----GL-EGCIEH 164 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~-~-~~~----~g~---------~~~~l~~~-----g~-~~~~~~ 164 (375)
.++||||||+|.||++||+.+ +.|.+|+||||... . +++ .++ +...+++. ++ ...+.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 358999999999999999999 99999999999754 2 211 011 11111110 11 110000
Q ss_pred -----------hcccceEEeCCCCC--e---eec-CCc------eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC
Q 017240 165 -----------VWRDTVVYIDEDEP--I---LIG-RAY------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST 220 (375)
Q Consensus 165 -----------~~~~~~~~~~~~~~--~---~~~-~~~------~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~ 220 (375)
......+.++.... . ..+ ..+ +......+...|.+.+++.||+++ ++.++++..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 00111111111000 0 000 000 011245788888888888999999 99999998766
Q ss_pred Cc-eEEEEe---cCC--eEEecCEEEEccCCCCc
Q 017240 221 SG-HRLVAC---EHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 221 ~~-~~~V~~---~~g--~~i~a~~vI~A~G~~s~ 248 (375)
++ +++|.. .+| ..+.|+.||+|||+++.
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 54 444442 345 36899999999998763
No 214
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.08 E-value=1.8e-10 Score=119.09 Aligned_cols=148 Identities=11% Similarity=0.195 Sum_probs=95.8
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+||++-.|+. .|++...++++.++..+.+-.....+... . ...++.+ ....+|+||||||+|+++|
T Consensus 259 grvCp~~~~Ce~----~C~~~~~~~~v~i~~l~r~~~d~~~~~~~--~----~~~~~~~--~~~kkVaIIG~GpaGl~aA 326 (639)
T PRK12809 259 GRVCPQDRLCEG----ACTLKDHSGAVSIGNLERYITDTALAMGW--R----PDVSKVV--PRSEKVAVIGAGPAGLGCA 326 (639)
T ss_pred cccCCCCCChHH----hccCCCcCCCcChhHHHHHHHHHHHHhCC--C----CCCCccc--CCCCEEEEECcCHHHHHHH
Confidence 499999999997 99998888888888877753321110000 0 0000111 2347899999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCC--CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTN--NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~--~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
..|++.|++|+|+|+....+. .||+ + ...++. .+.....+.+
T Consensus 327 ~~L~~~G~~Vtv~e~~~~~GG~l~~gi----------p-------------------------~~~l~~-~~~~~~~~~~ 370 (639)
T PRK12809 327 DILARAGVQVDVFDRHPEIGGMLTFGI----------P-------------------------PFKLDK-TVLSQRREIF 370 (639)
T ss_pred HHHHHcCCcEEEEeCCCCCCCeeeccC----------C-------------------------cccCCH-HHHHHHHHHH
Confidence 999999999999998864431 1221 0 011232 3344455677
Q ss_pred HHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
++.|++++ ++.+.. .+...+ ....+|.||+|+|+....
T Consensus 371 ~~~Gv~~~~~~~v~~---------~~~~~~-l~~~~DaV~latGa~~~~ 409 (639)
T PRK12809 371 TAMGIDFHLNCEIGR---------DITFSD-LTSEYDAVFIGVGTYGMM 409 (639)
T ss_pred HHCCeEEEcCCccCC---------cCCHHH-HHhcCCEEEEeCCCCCCC
Confidence 78999998 776521 111222 134689999999987544
No 215
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=4.8e-09 Score=107.43 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=81.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC------------cHHHHHh---c--CC--chhh
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV------------WEDEFRD---L--GL--EGCI 162 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~------------~~~~l~~---~--g~--~~~~ 162 (375)
..||||||+|.||++||+.+++.|.+|+||||....+.+ .|+ +...+++ . ++ +..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 369999999999999999999999999999987643211 011 1111111 0 01 1111
Q ss_pred h----------hhcccceEEeCCCCC--e--------eecCC-c-eeecHHHHHHHHHHHHHHCC----ceEE-EEEEEE
Q 017240 163 E----------HVWRDTVVYIDEDEP--I--------LIGRA-Y-GRVSRHLLHEELLRRCVESG----VSYL-SSKVES 215 (375)
Q Consensus 163 ~----------~~~~~~~~~~~~~~~--~--------~~~~~-~-~~v~~~~l~~~L~~~~~~~g----v~i~-~~~v~~ 215 (375)
. .......+.++.... . ...+. + +......+...|.+.+.+.+ |+++ ++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 0 000111111111000 0 00000 0 11235567788887776543 7888 999999
Q ss_pred EEEcC-CceEEEEec---CC--eEEecCEEEEccCCCCc
Q 017240 216 ITEST-SGHRLVACE---HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 216 i~~~~-~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~ 248 (375)
+..++ +.+++|... ++ ..+.|+.||+|||++..
T Consensus 163 Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 163 AVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 88753 435555542 33 35789999999998875
No 216
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.07 E-value=2.2e-09 Score=110.19 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=83.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCCCCC---c---C---------cHHHHHh---c--CCch--h
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY---G---V---------WEDEFRD---L--GLEG--C 161 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~~~~---g---~---------~~~~l~~---~--g~~~--~ 161 (375)
.++||||||+|.||++||+.+++. |.+|+||||........ | + ....++. . ++.+ .
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 358999999999999999999998 99999999976422111 1 1 0001110 0 1100 0
Q ss_pred hh----------hhcccceEEeCC--CCCee-ecCCceeecHHHHHHHHHHHHHHCC-ceEE-EEEEEEEEEcCCceEEE
Q 017240 162 IE----------HVWRDTVVYIDE--DEPIL-IGRAYGRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLV 226 (375)
Q Consensus 162 ~~----------~~~~~~~~~~~~--~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~V 226 (375)
+. .......+.++. ..... .+.....+....+...|.+.+++.+ |+++ ++.|+++..+++.++.|
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 00 000111111111 00000 0000002355678888888888765 9999 99999998665544444
Q ss_pred E---ecCC--eEEecCEEEEccCCCCc
Q 017240 227 A---CEHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 227 ~---~~~g--~~i~a~~vI~A~G~~s~ 248 (375)
. ..++ ..+.|+.||+|||+++.
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCchhh
Confidence 3 3344 36899999999998764
No 217
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.07 E-value=7.1e-09 Score=104.24 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=105.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|+++.... ..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-~~------------------------------------------ 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-RG------------------------------------------ 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-cc------------------------------------------
Confidence 37999999999999999999999999999864211 11
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-ccc-------cCcee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEY-------EEWSY 258 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~-------~~~~~ 258 (375)
. ...+.+.+.+.+++.||+++ ++.++.+...++ ...|.+.+|+++.+|.||+|.|..+... +.. .+...
T Consensus 220 ~-d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ 297 (499)
T PTZ00052 220 F-DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDD-KIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNK 297 (499)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC-eEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCC
Confidence 1 12356677778888999999 999988876554 4567777787899999999999776542 111 12222
Q ss_pred eecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 259 IPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 259 ~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
+..... ....++|+++||.+....+. ...|..++..++..|.
T Consensus 298 ii~~~~-~Ts~p~IyAiGDv~~~~~~l----~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 298 IIAPND-CTNIPNIFAVGDVVEGRPEL----TPVAIKAGILLARRLF 339 (499)
T ss_pred EeeCCC-cCCCCCEEEEEEecCCCccc----HHHHHHHHHHHHHHHh
Confidence 222222 34467999999987533332 3678888888888774
No 218
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.06 E-value=2.8e-09 Score=106.09 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=52.2
Q ss_pred eeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEE---ecCCe--EEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA---CEHDM--IVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~---~~~g~--~i~a~~vI~A~G~~s~~~~ 251 (375)
+.++...+.+.|.+.+.+ .|++++ +++|+++...+++.|.|+ +.++. ++.||+||+|.|+++..+.
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La 251 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLL 251 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHH
Confidence 478999999999999865 589999 999999987733356665 34442 6899999999999996653
No 219
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.06 E-value=7.9e-10 Score=108.09 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC--cEEEECCCCCCCCC-CcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLPFTNN-YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~--~V~liE~~~~~~~~-~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
.+|||||||+||+++|..|++.|. +|+||+++....-. ..+....+.. ... . .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~--------------------~~~---~-~ 59 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLE--------------------DSP---Q-L 59 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCC--------------------CCc---c-c
Confidence 579999999999999999999986 79999887533211 0110000000 000 0 0
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
..+.. .+...+.|++++ ++.|+.++.+.. .|.+.+|.++.+|.+|+|||+.+..
T Consensus 60 -~~~~~-------~~~~~~~~i~~~~g~~V~~id~~~~---~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 60 -QQVLP-------ANWWQENNVHLHSGVTIKTLGRDTR---ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred -cccCC-------HHHHHHCCCEEEcCCEEEEEECCCC---EEEECCCCEEEcCEEEEccCCCCCC
Confidence 00000 122345799999 889999987643 5677788889999999999987643
No 220
>PRK09897 hypothetical protein; Provisional
Probab=99.06 E-value=3.1e-09 Score=106.75 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=93.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCCC--CcCc--HHH-HHh---cCCch--hhhhhcccce--EEe
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNN--YGVW--EDE-FRD---LGLEG--CIEHVWRDTV--VYI 173 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~~--~g~~--~~~-l~~---~g~~~--~~~~~~~~~~--~~~ 173 (375)
.+|+||||||+|+++|..|.+.+ ++|+|||+....+.. |..- ... +.. ..++. .....|.... .++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 48999999999999999998865 589999997644421 2110 010 100 00110 0111121100 000
Q ss_pred CC--CCCeee-cCCce--eecH---HHHHHHHHHHHHHCC--ceEE-EEEEEEEEEcCCceEEEEecC-CeEEecCEEEE
Q 017240 174 DE--DEPILI-GRAYG--RVSR---HLLHEELLRRCVESG--VSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATV 241 (375)
Q Consensus 174 ~~--~~~~~~-~~~~~--~v~~---~~l~~~L~~~~~~~g--v~i~-~~~v~~i~~~~~~~~~V~~~~-g~~i~a~~vI~ 241 (375)
.. ...... ...|. .+.. ....+.+.+.+.+.| ++++ +++|+++...++ .+.|++.+ +..+.+|.||+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~-g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA-GVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC-EEEEEECCCCeEEEcCEEEE
Confidence 00 000000 00110 1122 122223344455566 6777 889999988766 67787755 46899999999
Q ss_pred ccCCCCcccccccCceeeecCCC----CCccCCCEEEEccCCCCCCCC
Q 017240 242 ASGAASGKLLEYEEWSYIPVGGS----LPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 242 A~G~~s~~~~~~~~~~~~p~~~~----~~~~~~~v~liGdaa~~~~p~ 285 (375)
|+|...+.... ....+++.... ......+|+++|-+-.++|-.
T Consensus 161 AtGh~~p~~~~-~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v 207 (534)
T PRK09897 161 ATGHVWPDEEE-ATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAA 207 (534)
T ss_pred CCCCCCCCCCh-hhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHH
Confidence 99965433221 11123221111 112257899999887776654
No 221
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=3.5e-09 Score=109.10 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=83.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC-----CCcC------------cHHHHH----h-cCCch--h
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-----NYGV------------WEDEFR----D-LGLEG--C 161 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-----~~g~------------~~~~l~----~-~g~~~--~ 161 (375)
.++||||||+|.||++||+.+++.|.+|+||||...... ..|+ +...++ . -++.+ .
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 358999999999999999999999999999999754321 0011 111111 0 11111 0
Q ss_pred hh----------hhcccceEEeCC--CCCe---ee-cCCce------eecHHHHHHHHHHHHHHC--------C-----c
Q 017240 162 IE----------HVWRDTVVYIDE--DEPI---LI-GRAYG------RVSRHLLHEELLRRCVES--------G-----V 206 (375)
Q Consensus 162 ~~----------~~~~~~~~~~~~--~~~~---~~-~~~~~------~v~~~~l~~~L~~~~~~~--------g-----v 206 (375)
+. .......+.++. +... .. +..+. .-....+...|.+.+.+. | |
T Consensus 87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v 166 (626)
T PRK07803 87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARI 166 (626)
T ss_pred HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCce
Confidence 00 111111111111 0000 00 00111 112456788888888766 6 9
Q ss_pred eEE-EEEEEEEEEcCCceEEEEe---cCC--eEEecCEEEEccCCCCc
Q 017240 207 SYL-SSKVESITESTSGHRLVAC---EHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 207 ~i~-~~~v~~i~~~~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~ 248 (375)
+++ ++.|+++..+++.+.+|.. .++ ..+.|+.||+|||+...
T Consensus 167 ~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 167 KVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred EEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 999 9999999876553444432 345 36899999999998653
No 222
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.05 E-value=9.5e-09 Score=102.92 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=106.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.++|||||+.|+.+|..|++.|.+|+|+++.. ....
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~------------------------------------------ 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRG------------------------------------------ 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cccc------------------------------------------
Confidence 369999999999999999999999999998642 1110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC---eEEecCEEEEccCCCCccc-ccc-------cC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCRLATVASGAASGKL-LEY-------EE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g---~~i~a~~vI~A~G~~s~~~-~~~-------~~ 255 (375)
.+ .++.+.+.+.+++.||+++ ++.++.+...++ .+.|++.++ .++.+|.||+|+|..+..- +.+ ..
T Consensus 218 ~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~ 295 (484)
T TIGR01438 218 FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-KVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINK 295 (484)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecC
Confidence 11 2456677788888999999 988888876554 455665544 4799999999999765442 111 11
Q ss_pred -ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 256 -WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 256 -~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
...+.++..+....++|+++||.+....+. ...|..+|..+++.|.
T Consensus 296 ~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l----~~~A~~~g~~aa~~i~ 342 (484)
T TIGR01438 296 KTGKIPADEEEQTNVPYIYAVGDILEDKQEL----TPVAIQAGRLLAQRLF 342 (484)
T ss_pred cCCeEecCCCcccCCCCEEEEEEecCCCccc----hHHHHHHHHHHHHHHh
Confidence 234455544555567999999988643332 2568888888888875
No 223
>PLN02815 L-aspartate oxidase
Probab=99.05 E-value=2.3e-09 Score=109.47 Aligned_cols=142 Identities=24% Similarity=0.327 Sum_probs=83.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCc---------HHHHHhc-----CC-c-hhhh-
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFRDL-----GL-E-GCIE- 163 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~---------~~~l~~~-----g~-~-~~~~- 163 (375)
.++||||||+|.|||+||+.+++.| +|+||||....+.+ .|++ ...+++. ++ . ..+.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 106 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV 106 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence 3589999999999999999999999 99999998754321 1111 1111110 11 1 1010
Q ss_pred ---------hhcccceEEeCCCCC--e---eec-CCc------eeecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcC
Q 017240 164 ---------HVWRDTVVYIDEDEP--I---LIG-RAY------GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITEST 220 (375)
Q Consensus 164 ---------~~~~~~~~~~~~~~~--~---~~~-~~~------~~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~ 220 (375)
.......+.++.... . ..+ ..+ +......+...|.+.+.+. ||+++ ++.++++..++
T Consensus 107 ~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~ 186 (594)
T PLN02815 107 VCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQ 186 (594)
T ss_pred HHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeec
Confidence 011111122221100 0 000 000 1123456888888888764 89999 99999998753
Q ss_pred Cc----eEEEEe---cCC--eEEecCEEEEccCCCCc
Q 017240 221 SG----HRLVAC---EHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 221 ~~----~~~V~~---~~g--~~i~a~~vI~A~G~~s~ 248 (375)
++ +++|.. .+| ..+.|+.||+|||++..
T Consensus 187 ~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 187 DGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred CCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 32 445543 345 36789999999998754
No 224
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.04 E-value=1.6e-08 Score=98.95 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCcccc--cc----------
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLL--EY---------- 253 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~--~~---------- 253 (375)
...++.+.|.+.+++.|++++ +++|+++..++++...+.+.++ ..+.+|.||+|+|.+...-+ ..
T Consensus 257 pG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l 336 (422)
T PRK05329 257 PGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGL 336 (422)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCC
Confidence 345678888899989999999 9999999877653333444444 46899999999998754311 00
Q ss_pred --------cCc---------eeee----cCCCC-------CccCCCEEEEccCCCCCCCC-ChHHHHHHHhhHHHHHHHH
Q 017240 254 --------EEW---------SYIP----VGGSL-------PNTEQRNLAFGAAASMVHPA-TGYSVVRSLSEAPNYASAI 304 (375)
Q Consensus 254 --------~~~---------~~~p----~~~~~-------~~~~~~v~liGdaa~~~~p~-~G~Gi~~al~~a~~~a~~i 304 (375)
..| ++.. ++..+ ...-+|++++|+.-++.||. .|-|-..++..|..+++.|
T Consensus 337 ~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~ 416 (422)
T PRK05329 337 DVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQI 416 (422)
T ss_pred CCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHH
Confidence 001 1111 11111 12247899999998888886 2333345677888888777
Q ss_pred HHH
Q 017240 305 AYI 307 (375)
Q Consensus 305 ~~~ 307 (375)
.+.
T Consensus 417 ~~~ 419 (422)
T PRK05329 417 AEE 419 (422)
T ss_pred HHh
Confidence 653
No 225
>PRK08275 putative oxidoreductase; Provisional
Probab=99.04 E-value=3.8e-09 Score=107.57 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=83.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCCC-C--C---cC----------cHHHHHh-----cCC--ch
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTN-N--Y---GV----------WEDEFRD-----LGL--EG 160 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~~-~--~---g~----------~~~~l~~-----~g~--~~ 160 (375)
.++||||||+|.||++||+.+++. |.+|+||||...... . . |+ +...+++ -++ +.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999987 689999999865211 1 1 11 0001110 011 00
Q ss_pred hhh----------hhcccceEEeCCCC-C-eeec-----CCc--eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEc-
Q 017240 161 CIE----------HVWRDTVVYIDEDE-P-ILIG-----RAY--GRVSRHLLHEELLRRCVESGVSYL-SSKVESITES- 219 (375)
Q Consensus 161 ~~~----------~~~~~~~~~~~~~~-~-~~~~-----~~~--~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~- 219 (375)
.+. .......+.++... . .... ..+ ..-....+.+.|.+.+++.|++++ ++.|+++..+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 000 00011111111100 0 0000 000 011345688899999988999999 9999999876
Q ss_pred CCceEEEE---ecCCe--EEecCEEEEccCCCCc
Q 017240 220 TSGHRLVA---CEHDM--IVPCRLATVASGAASG 248 (375)
Q Consensus 220 ~~~~~~V~---~~~g~--~i~a~~vI~A~G~~s~ 248 (375)
++...+|. ..+|. .+.++.||+|||+.+.
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 44344444 23553 5899999999998764
No 226
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.04 E-value=4.5e-09 Score=107.30 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=84.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCCCCC-----cC---------cHHHHHh---cC--Cc--hhhh
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY-----GV---------WEDEFRD---LG--LE--GCIE 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~~~~-----g~---------~~~~l~~---~g--~~--~~~~ 163 (375)
++||+|||+|+||++||+.+++. |.+|+||||....+.+. |+ +...+++ .+ +. +.+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 48999999999999999999987 58999999986533211 11 0111111 01 10 0000
Q ss_pred ----------hhcccceEEeCC--CCCe---eec-CCc----e--eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEc
Q 017240 164 ----------HVWRDTVVYIDE--DEPI---LIG-RAY----G--RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITES 219 (375)
Q Consensus 164 ----------~~~~~~~~~~~~--~~~~---~~~-~~~----~--~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~ 219 (375)
.......+.++. +... ..+ ..+ . .-....+...|.+.+.+ .||+++ ++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 001111111110 0000 000 000 0 01346788888888876 489999 9999999876
Q ss_pred CCceEEEE---ecCC--eEEecCEEEEccCCCCcc
Q 017240 220 TSGHRLVA---CEHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 220 ~~~~~~V~---~~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
++.+.+|. ..+| ..+.|+.||+|||+++..
T Consensus 163 ~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 65444443 3355 468999999999998754
No 227
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.04 E-value=7.2e-09 Score=105.87 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHCCceEE-EEEEEEEEEcCCceEEEE-----e----c-------CC--eEEecCEEEEccCCCCcc-ccc-c----c
Q 017240 200 RCVESGVSYL-SSKVESITESTSGHRLVA-----C----E-------HD--MIVPCRLATVASGAASGK-LLE-Y----E 254 (375)
Q Consensus 200 ~~~~~gv~i~-~~~v~~i~~~~~~~~~V~-----~----~-------~g--~~i~a~~vI~A~G~~s~~-~~~-~----~ 254 (375)
.+.+.|++++ ++.++.+..++++.+.|+ . . +| .++.+|.||.|.|..... +.. . .
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~ 393 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEV 393 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCccc
Confidence 3456799999 888888876554332221 1 1 12 479999999999965432 111 1 1
Q ss_pred CceeeecCC-CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 255 EWSYIPVGG-SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 255 ~~~~~p~~~-~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.+..+.++. ......++|+++||+.... ..+..|+.+|+.+|..|..+|.+.
T Consensus 394 ~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~-----~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 394 GRGVVQVDPNFMMTGRPGVFAGGDMVPGP-----RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCEEeCCCCccCCCCCEEeccCcCCCc-----hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 223333333 2334467999999987532 246789999999999999999764
No 228
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.03 E-value=2.9e-10 Score=100.13 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=71.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
||+||||||||+++|..|++.|++|+|||+..... ....++...+... .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~------------------------------~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEI------------------------------A 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHH------------------------------H
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccc------------------------------c
Confidence 79999999999999999999999999998764211 1111111110000 0
Q ss_pred ecHHHHH--H--HHHHHHHHCCceEE-EEEEEEEEEcCCc----eEEE---EecCCeEEecCEEEEccCCCCc
Q 017240 188 VSRHLLH--E--ELLRRCVESGVSYL-SSKVESITESTSG----HRLV---ACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 188 v~~~~l~--~--~L~~~~~~~gv~i~-~~~v~~i~~~~~~----~~~V---~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
.....+. + .+.+.+...+++++ +++|.+++..... .+.+ ...++.++.+|+||+|+|..+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 51 PHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccccccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 0000111 1 44555566899998 9999999877651 1122 2345578999999999996644
No 229
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.03 E-value=2e-09 Score=109.26 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=81.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcCc---------HHHHHhc-----CC-chhhh--
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFRDL-----GL-EGCIE-- 163 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~~---------~~~l~~~-----g~-~~~~~-- 163 (375)
.++||||||+|.||++||+++++ |.+|+||||....+.+ .|++ ...+++. ++ .....
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 86 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF 86 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45899999999999999999974 9999999998654321 1111 1111110 11 00000
Q ss_pred ---------hhcccceEEeCCCC-Cee----ecCCc--e-e---ecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcC-
Q 017240 164 ---------HVWRDTVVYIDEDE-PIL----IGRAY--G-R---VSRHLLHEELLRRCVE-SGVSYL-SSKVESITEST- 220 (375)
Q Consensus 164 ---------~~~~~~~~~~~~~~-~~~----~~~~~--~-~---v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~- 220 (375)
.......+.++... ... .+... . . -....+...|.+.+.+ .||+++ ++.|+++..++
T Consensus 87 ~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~ 166 (553)
T PRK07395 87 LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE 166 (553)
T ss_pred HHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCC
Confidence 01111111121110 000 00000 0 0 1245678888888875 499999 99999998763
Q ss_pred -CceEEEEe-cCCe--EEecCEEEEccCCCC
Q 017240 221 -SGHRLVAC-EHDM--IVPCRLATVASGAAS 247 (375)
Q Consensus 221 -~~~~~V~~-~~g~--~i~a~~vI~A~G~~s 247 (375)
+.+++|.. .+|. .+.++.||+|||++.
T Consensus 167 ~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 167 TGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 33445543 3443 478999999999864
No 230
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.03 E-value=6.5e-09 Score=107.54 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
..+...|.+.+.+.||+++ ++.|+++..+++.+.+|.. .+| ..+.|+.||+|||++...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 4566778888888999999 9999999876654444443 355 357899999999987643
No 231
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.01 E-value=9.4e-09 Score=96.16 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=100.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.+|+|||+|++|+.+|..|++.+.+|+++++.....
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------------------------------------- 177 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------------------------------------- 177 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------------------------------
Confidence 489999999999999999999999999998763210
Q ss_pred ecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEec---C--CeEEecCEEEEccCCCCcc-ccc----ccC
Q 017240 188 VSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACE---H--DMIVPCRLATVASGAASGK-LLE----YEE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~---~--g~~i~a~~vI~A~G~~s~~-~~~----~~~ 255 (375)
....+.+.+++. |++++ ++.++++..++. ...+++. + +.++.+|.||.|+|..+.. +.. ..+
T Consensus 178 -----~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~ 251 (300)
T TIGR01292 178 -----AEKILLDRLRKNPNIEFLWNSTVKEIVGDNK-VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDE 251 (300)
T ss_pred -----cCHHHHHHHHhCCCeEEEeccEEEEEEccCc-EEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecC
Confidence 011233445556 99999 999999976542 3344432 2 3579999999999966543 211 122
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHH
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYI 307 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~ 307 (375)
...+.+........++++++||++... + .-+..|+.+|..+|..|...
T Consensus 252 ~g~i~v~~~~~t~~~~vya~GD~~~~~-~---~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 252 GGYIVTDEGMRTSVPGVFAAGDVRDKG-Y---RQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCcEEECCCCccCCCCEEEeecccCcc-h---hhhhhhhhhHHHHHHHHHhh
Confidence 233444444445567999999998741 1 22468899999999888754
No 232
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.01 E-value=3.2e-09 Score=114.70 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
..+||+||||||||+++|+.|++.|++|+|||++...+..+.. . .. ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~--~-----------------------~~-------~~ 209 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS--E-----------------------AE-------TI 209 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec--c-----------------------cc-------cc
Confidence 3589999999999999999999999999999987654322100 0 00 00
Q ss_pred eeecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEe---------c----CC-eEEecCEEEEccCCCCcc
Q 017240 186 GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVAC---------E----HD-MIVPCRLATVASGAASGK 249 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~---------~----~g-~~i~a~~vI~A~G~~s~~ 249 (375)
...+...+...+.+++.+. +++++ ++.|..+..... ...+.. . +. .++.++.||+|||+....
T Consensus 210 ~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~-v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 210 DGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNT-VGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred CCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCe-EEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 0123345656666777665 59999 899888754221 111110 0 11 268999999999987533
Q ss_pred cccccCc---eeeec-------CCCCCccCCCEEEEccCCCCCC
Q 017240 250 LLEYEEW---SYIPV-------GGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 250 ~~~~~~~---~~~p~-------~~~~~~~~~~v~liGdaa~~~~ 283 (375)
+ ++.++ .++.. .......+++++++|.+..+++
T Consensus 289 ~-pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e 331 (985)
T TIGR01372 289 L-VFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYR 331 (985)
T ss_pred C-CCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHH
Confidence 2 22211 11110 0001124679999998765444
No 233
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=6.6e-10 Score=107.97 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=90.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC----CCCC-------cCcHHHHHhcCCchhhhhhcccceE---E
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF----TNNY-------GVWEDEFRDLGLEGCIEHVWRDTVV---Y 172 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~----~~~~-------g~~~~~l~~~g~~~~~~~~~~~~~~---~ 172 (375)
.|||+|||||.||+.||++.++.|.+++|+-.+... .+|- |....+++.+|=. .....+...+ .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~--Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGL--MGKAADKAGIQFRM 81 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccch--HHHhhhhcCCchhh
Confidence 499999999999999999999999999999654321 1111 1122233333210 0001111000 0
Q ss_pred eCCCCCeeecCCceeecHHHHHHHHHHHHHH-CCceEEEEEEEEEEEcCC-ceEEEEecCCeEEecCEEEEccCCCC
Q 017240 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTS-GHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~-~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
++.........+-.+.|+..+.+.+.+.++. .++.++...|+++..+++ .+++|.+.+|..+.|+.||++||.+-
T Consensus 82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 1111111111222367888888888888876 589999888888887655 37899999999999999999999864
No 234
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.00 E-value=1.1e-09 Score=108.56 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=70.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
+|||||||++|+++|..|++.+ .+|+|||+++...-.- .++.. +... .
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~---------~~~~~-----------~~~~--------~-- 51 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA---------CGLPY-----------FVGG--------F-- 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec---------CCCce-----------Eecc--------c--
Confidence 6999999999999999999986 5899999885432100 00000 0000 0
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe-cCCeEEe--cCEEEEccCCCCc
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-EHDMIVP--CRLATVASGAASG 248 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~-~~g~~i~--a~~vI~A~G~~s~ 248 (375)
.-....+.....+.+.+.|++++ ++.|+.++.+++ .+.+.. .++.++. +|++|+|||+.+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~-~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 52 FDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK-TITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred cCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC-EEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 00112233333455667899998 999999987665 444443 2244566 9999999998754
No 235
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.99 E-value=2e-08 Score=97.35 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=80.6
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCC-Cccccc-c---------
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAA-SGKLLE-Y--------- 253 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~-s~~~~~-~--------- 253 (375)
+....+.+.|.+.+++.|++++ +++|+++..++++...|.+.++ .++.||.||+|+|+| |..+.. +
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~ 339 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFG 339 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccC
Confidence 4567899999999999999999 8899999877764555666665 589999999999999 765421 1
Q ss_pred ---------cCce---e---ee-------cCCCCC-----ccCCCEEEEccCCCCCCCC-ChHHHHHHHhhHHHHHHHH
Q 017240 254 ---------EEWS---Y---IP-------VGGSLP-----NTEQRNLAFGAAASMVHPA-TGYSVVRSLSEAPNYASAI 304 (375)
Q Consensus 254 ---------~~~~---~---~p-------~~~~~~-----~~~~~v~liGdaa~~~~p~-~G~Gi~~al~~a~~~a~~i 304 (375)
..|. + .| ++..+. ..-+|++++|..-++.||. .|-|-..++..|..+++.|
T Consensus 340 L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 340 LDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhh
Confidence 0010 0 01 111111 2356899999998888885 2333345677777777655
No 236
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.99 E-value=4.8e-09 Score=103.72 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=55.9
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-----eEEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-----~~i~a~~vI~A~G~~s~~~~ 251 (375)
+.++...|.-.+...+.+.|.+++ .++|+.+..+++ ++.|++.|. .+++|+.||.|+|.|+..+.
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~ 229 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEIL 229 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHH
Confidence 478888899999999999999999 999999999888 788887653 36999999999999986653
No 237
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.99 E-value=1e-09 Score=109.92 Aligned_cols=146 Identities=15% Similarity=0.277 Sum_probs=90.7
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+|+. .|+. .|.+...++++.....+.+-........ ... +..+......+|+||||||+|+++|
T Consensus 94 grvC~~--~Ce~----~C~~~~~~~~v~I~~l~r~~~~~~~~~~------~~~--~~~~~~~~~~~V~IIGaG~aGl~aA 159 (485)
T TIGR01317 94 GRVCPA--PCEG----ACTLGISEDPVGIKSIERIIIDKGFQEG------WVQ--PRPPSKRTGKKVAVVGSGPAGLAAA 159 (485)
T ss_pred hCcCCh--hhHH----hccCCCCCCCcchhHHHHHHHHHHHHcC------CCC--CCCCcCCCCCEEEEECCcHHHHHHH
Confidence 388887 4776 9999988888888877664322110000 000 0000012346999999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCCC--CCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFTN--NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~--~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
..|++.|++|+|||+....+. .+|+ +...++. .+.....+.+
T Consensus 160 ~~L~~~g~~V~v~e~~~~~gG~l~~gi-----------------------------------p~~~~~~-~~~~~~~~~~ 203 (485)
T TIGR01317 160 DQLNRAGHTVTVFEREDRCGGLLMYGI-----------------------------------PNMKLDK-AIVDRRIDLL 203 (485)
T ss_pred HHHHHcCCeEEEEecCCCCCceeeccC-----------------------------------CCccCCH-HHHHHHHHHH
Confidence 999999999999998754321 1111 0011222 2444445677
Q ss_pred HHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
++.|++++ ++.|.. . +.. ++....+|.||+|+|++.+.
T Consensus 204 ~~~Gv~~~~~~~v~~-~--------~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 204 SAEGIDFVTNTEIGV-D--------ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred HhCCCEEECCCEeCC-c--------cCH-HHHHhhCCEEEEccCCCCCC
Confidence 78899999 777631 1 111 11235799999999987433
No 238
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=6.9e-09 Score=105.66 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-CC--eEEecC-EEEEccCCCCc
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPCR-LATVASGAASG 248 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g--~~i~a~-~vI~A~G~~s~ 248 (375)
..+...|.+.+++.|++++ ++.|+++..+++.++.|... +| ..+.++ .||+|+|+++.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 3566777888888999999 99999998776555555542 34 357884 79999999875
No 239
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.99 E-value=8.3e-10 Score=109.61 Aligned_cols=135 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred cccEEEECCCHHHHHHHHHHHH--CCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~--~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
..+|+||||||||+++|..|++ .|++|+|||+.+..+ |+.. +++. +.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg---Glvr-----~gva-----------------------P~ 74 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF---GLVR-----SGVA-----------------------PD 74 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc---ceEe-----eccC-----------------------CC
Confidence 4689999999999999999997 799999999886432 2210 0000 00
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccC---ceeee
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEE---WSYIP 260 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~---~~~~p 260 (375)
+ -....+...+.+.+...+++++ +..+- ..++.++- ...+|.||+|+|+.........+ ..+++
T Consensus 75 ~--~~~k~v~~~~~~~~~~~~v~~~~nv~vg---------~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~ 142 (491)
T PLN02852 75 H--PETKNVTNQFSRVATDDRVSFFGNVTLG---------RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLS 142 (491)
T ss_pred c--chhHHHHHHHHHHHHHCCeEEEcCEEEC---------ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEE
Confidence 0 1112344455555666789988 66552 12333333 34699999999987543322211 11111
Q ss_pred c-------CC-----CC---CccCCCEEEEccCCCCCCC
Q 017240 261 V-------GG-----SL---PNTEQRNLAFGAAASMVHP 284 (375)
Q Consensus 261 ~-------~~-----~~---~~~~~~v~liGdaa~~~~p 284 (375)
. .+ .. ...++++++||.+..++|.
T Consensus 143 a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~ 181 (491)
T PLN02852 143 AREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDC 181 (491)
T ss_pred HHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHH
Confidence 0 00 01 1246799999988655543
No 240
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.98 E-value=3.9e-09 Score=106.47 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEec-CC--eEEecCEEEEccCCCCc
Q 017240 190 RHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACE-HD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~-~g--~~i~a~~vI~A~G~~s~ 248 (375)
...+...|.+.+.+. ||+++ ++.|+++..+++.++.|.+. ++ ..+.|+.||+|||+++.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 457888888888775 89999 89999987655534555543 22 36899999999999763
No 241
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.98 E-value=1.1e-09 Score=108.90 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=80.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC--CCCcCcHH-HHHhc-CCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWED-EFRDL-GLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~--~~~g~~~~-~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
+|||+|||+||+|..+|.. ..|.+|+|||++.-.+ -++|+.+. .|-.. .+.....+ .....+..... .
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~-~---- 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEID-S---- 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCCC-c----
Confidence 4999999999999998654 4799999999865444 46666432 21110 00000000 00000000000 0
Q ss_pred CCce-eecHH-H-HHHHHH----HH-H--HHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc
Q 017240 183 RAYG-RVSRH-L-LHEELL----RR-C--VESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 183 ~~~~-~v~~~-~-l~~~L~----~~-~--~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~ 252 (375)
..+. .+.+. . ..+.+. +. . ++.||+++....... +. .+|++.+|+++++|.||+|||+.+..+..
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~---~~V~~~~g~~~~~d~lIiATGs~p~~p~~ 148 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GP---RTLRTGDGEEITGDQIVIAAGSRPYIPPA 148 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cC---CEEEECCCcEEEeCEEEEEECCCCCCCCC
Confidence 0010 01110 0 111111 11 1 237999983333222 22 35666677789999999999987643321
Q ss_pred cc--Cceeeec--CCCCCccCCCEEEEccCC
Q 017240 253 YE--EWSYIPV--GGSLPNTEQRNLAFGAAA 279 (375)
Q Consensus 253 ~~--~~~~~p~--~~~~~~~~~~v~liGdaa 279 (375)
.. ...++.. ...++..++++++||++.
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ 179 (452)
T TIGR03452 149 IADSGVRYHTNEDIMRLPELPESLVIVGGGY 179 (452)
T ss_pred CCCCCCEEEcHHHHHhhhhcCCcEEEECCCH
Confidence 11 1111111 111223468999999875
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.97 E-value=4.9e-09 Score=97.63 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=98.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcH-H-HHHhcCCchhhhh-hcccceEEeCCCCCe
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE-D-EFRDLGLEGCIEH-VWRDTVVYIDEDEPI 179 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~-~-~l~~~g~~~~~~~-~~~~~~~~~~~~~~~ 179 (375)
.+|||+|||+||.|..+|+.+++.|++.+.||++...+. +.|+.+ . .|..-.+-....+ ......+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~---- 113 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSS---- 113 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccc----
Confidence 369999999999999999999999999999999776553 234422 1 1111110000000 00000000000
Q ss_pred eecCCceeecHH-----------HHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCC
Q 017240 180 LIGRAYGRVSRH-----------LLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAA 246 (375)
Q Consensus 180 ~~~~~~~~v~~~-----------~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~ 246 (375)
..++.+ .|...+....++.+|+++......+.+ . .+.+...|| ..+.++.+|+|||.-
T Consensus 114 ------~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p--~-~V~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 114 ------VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP--N-KVSVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred ------eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCC--c-eEEEeccCCCceEEeeeeEEEEeCCc
Confidence 012222 344444455556677777332222222 2 466666666 579999999999964
Q ss_pred Cccc--ccccCceeeecCCC--CCccCCCEEEEccCCCCCCCC
Q 017240 247 SGKL--LEYEEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 247 s~~~--~~~~~~~~~p~~~~--~~~~~~~v~liGdaa~~~~p~ 285 (375)
-..+ +..++..++...+. +...++++.++|.+..+.+..
T Consensus 185 V~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~g 227 (506)
T KOG1335|consen 185 VTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMG 227 (506)
T ss_pred cCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehh
Confidence 3333 23355556665444 457799999999998877654
No 243
>PRK13984 putative oxidoreductase; Provisional
Probab=98.97 E-value=1.3e-09 Score=112.28 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=103.0
Q ss_pred ccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHHH
Q 017240 45 YKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAA 124 (375)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~ 124 (375)
|+|+. .|+. .|++....+++.+...+.+-........ . ...... ....+..+|+|||+||+|+++|.
T Consensus 234 ~vC~~--~Ce~----~C~~~~~~~~~~i~~~~~~~~~~~~~~~---~---~~~~~~-~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 234 RVCTH--KCET----VCSIGHRGEPIAIRWLKRYIVDNVPVEK---Y---SEILDD-EPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred CcCCc--hHHH----hhcccCCCCCeEeCcHHHHHHhHHHHcC---c---ccccCC-CcccCCCeEEEECCCHHHHHHHH
Confidence 88887 5776 9999877777777654432211100000 0 000000 00123478999999999999999
Q ss_pred HHHHCCCcEEEECCCCCCCCC--CcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHH
Q 017240 125 ESAKLGLNVGLIGPDLPFTNN--YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (375)
Q Consensus 125 ~La~~G~~V~liE~~~~~~~~--~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~ 202 (375)
.|++.|++|+|||+....+.. +++ +...+. ..+.....+.++
T Consensus 301 ~L~~~G~~v~vie~~~~~gG~~~~~i-----------------------------------~~~~~~-~~~~~~~~~~~~ 344 (604)
T PRK13984 301 FLATMGYEVTVYESLSKPGGVMRYGI-----------------------------------PSYRLP-DEALDKDIAFIE 344 (604)
T ss_pred HHHHCCCeEEEEecCCCCCceEeecC-----------------------------------CcccCC-HHHHHHHHHHHH
Confidence 999999999999987543211 111 000111 234444456777
Q ss_pred HCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---eeee-------c------CCCC
Q 017240 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---SYIP-------V------GGSL 265 (375)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~~~p-------~------~~~~ 265 (375)
+.|++++ ++.|.. + +..++ ....+|.||+|+|+..+...+..+. .++. . ....
T Consensus 345 ~~gv~~~~~~~v~~-----~----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~ 414 (604)
T PRK13984 345 ALGVKIHLNTRVGK-----D----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPK 414 (604)
T ss_pred HCCcEEECCCEeCC-----c----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCc
Confidence 8899998 877631 0 11111 1357999999999865433222111 1111 0 0111
Q ss_pred CccCCCEEEEccCCCCCC
Q 017240 266 PNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 266 ~~~~~~v~liGdaa~~~~ 283 (375)
...++++++||++..+++
T Consensus 415 ~~~~k~VvVIGGG~~g~e 432 (604)
T PRK13984 415 PKIPRSLVVIGGGNVAMD 432 (604)
T ss_pred CCCCCcEEEECCchHHHH
Confidence 234689999998865554
No 244
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.96 E-value=1.3e-08 Score=103.27 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=82.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC---------cHHHHHhc-----CCch--hhh-
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV---------WEDEFRDL-----GLEG--CIE- 163 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~---------~~~~l~~~-----g~~~--~~~- 163 (375)
.++||||||+|.||++||+.+++. .+|+||||....+.+ .|+ +...+++. ++.+ .+.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 358999999999999999999986 899999998643211 111 11111111 1111 010
Q ss_pred ---------hhcccceEEeCCCC------Cee---e-cCCce------eecHHHHHHHHHHHHHHC-CceEE-EEEEEEE
Q 017240 164 ---------HVWRDTVVYIDEDE------PIL---I-GRAYG------RVSRHLLHEELLRRCVES-GVSYL-SSKVESI 216 (375)
Q Consensus 164 ---------~~~~~~~~~~~~~~------~~~---~-~~~~~------~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i 216 (375)
..+....+.++... ... . +.... .-....+...|.+.+.+. ||+++ ++.++++
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 01111111111100 000 0 00000 112456788888888764 89999 9999998
Q ss_pred EEcC------CceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 217 TEST------SGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 217 ~~~~------~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
..++ +.+++|.. .+| ..+.++.||+|||+++..
T Consensus 166 i~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 166 ITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred eecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 7653 33555543 234 368999999999997744
No 245
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=1.2e-08 Score=103.92 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-CC--eEEec-CEEEEccCCCCcc
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPC-RLATVASGAASGK 249 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g--~~i~a-~~vI~A~G~~s~~ 249 (375)
.+...|.+.+++.||+++ ++.|+++..+++.++.|... +| ..+.+ +.||+|||.++..
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 456678888888999999 99999998755545555432 34 24566 5899999998754
No 246
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.96 E-value=1.5e-08 Score=104.04 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHH----CCceEE-EEEEEEEEEcCC-ceEEEEec---CC--eEEecCEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVE----SGVSYL-SSKVESITESTS-GHRLVACE---HD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~----~gv~i~-~~~v~~i~~~~~-~~~~V~~~---~g--~~i~a~~vI~A~G~~s~~ 249 (375)
...+...|.+.+++ .||+++ ++.++++..+++ .+++|... +| ..+.|+.||+|||+++..
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 34555556555543 489999 999999987543 35556542 34 368999999999988754
No 247
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.96 E-value=1.8e-08 Score=103.15 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec--CCe-EEecC-EEEEccCCCCc
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HDM-IVPCR-LATVASGAASG 248 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~--~g~-~i~a~-~vI~A~G~~s~ 248 (375)
..+...|.+.+++.|++++ ++.|+++..+++.++.|... ++. .+.++ .||+|+|.++.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3466678888888999999 99999998776545555553 342 47775 79999998873
No 248
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=2.2e-08 Score=102.01 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-CC--eEEecC-EEEEccCCCCc
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPCR-LATVASGAASG 248 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g--~~i~a~-~vI~A~G~~s~ 248 (375)
.+...|.+.+++.|++++ ++.|+++..+++.++.|... ++ ..+.++ .||+|+|++..
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 456667777888899999 99999998765545555443 34 358886 69999998875
No 249
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.95 E-value=8e-09 Score=105.76 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe--cCC-eEEec-CEEEEccCCCCcc
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--EHD-MIVPC-RLATVASGAASGK 249 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~--~~g-~~i~a-~~vI~A~G~~s~~ 249 (375)
+...+...|.+.+++.|++++ ++.|+++..+++.++.|.. .++ .++.+ +.||+|+|+++..
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 344577888899999999999 9999998876554444544 344 35888 9999999999853
No 250
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.95 E-value=2.4e-08 Score=99.19 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=100.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||||..|+-+|..|.+.|.+|+|+++..... ..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~--~~---------------------------------------- 310 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED--MT---------------------------------------- 310 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc--CC----------------------------------------
Confidence 479999999999999999999999999998763210 00
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEec---------CC-----------eEEecCEEEEccCC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------HD-----------MIVPCRLATVASGA 245 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~---------~g-----------~~i~a~~vI~A~G~ 245 (375)
. .....+.+++.||+++ ++.++.+..++++ ...|++. +| .++.+|.||+|.|.
T Consensus 311 ~-----~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 311 A-----RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred C-----CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 0 0112345567899999 8888888754432 2234332 22 36999999999997
Q ss_pred CCcccc------cccCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHH
Q 017240 246 ASGKLL------EYEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 308 (375)
Q Consensus 246 ~s~~~~------~~~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l 308 (375)
.+.... ...++..+.+...+....++|+++||..... .-+..|+.+|..+|..|.++|
T Consensus 386 ~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~-----~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 386 GSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA-----ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc-----HHHHHHHHHHHHHHHHHHhhC
Confidence 654321 1122233333333444467899999997532 245789999999999987654
No 251
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.95 E-value=3.3e-09 Score=101.43 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=68.2
Q ss_pred HHHHHH-HCCceEEEEEEEEEEEcCCceEEEEecC---C--eEEecCEEEEccCCCCcc----c-----ccccCceee--
Q 017240 197 LLRRCV-ESGVSYLSSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGK----L-----LEYEEWSYI-- 259 (375)
Q Consensus 197 L~~~~~-~~gv~i~~~~v~~i~~~~~~~~~V~~~~---g--~~i~a~~vI~A~G~~s~~----~-----~~~~~~~~~-- 259 (375)
+..+.+ +.||.++..++..|...+++...|..+| | .++.+|+||+++|.-+.. . +.+.+.+++
T Consensus 420 fY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~ 499 (622)
T COG1148 420 FYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKE 499 (622)
T ss_pred HHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCcccc
Confidence 333343 6899988888888887776555665554 3 478999999999954321 1 112233322
Q ss_pred --ecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 260 --PVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 260 --p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
|-..+.....+++++.|-+.+..|-. .++.+|..+|...+..+..+
T Consensus 500 ~hPkl~pv~s~~~GIflAG~aqgPkdI~------~siaqa~aAA~kA~~~l~~g 547 (622)
T COG1148 500 AHPKLRPVDSNRDGIFLAGAAQGPKDIA------DSIAQAKAAAAKAAQLLGRG 547 (622)
T ss_pred CCCCcccccccCCcEEEeecccCCccHH------HHHHHhHHHHHHHHHHhhcC
Confidence 22222334567899999988777754 45666666666555555443
No 252
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.5e-09 Score=89.45 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=98.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|||+-++|++++++.++.+|+|-....+..-|- .......-....+.|- .
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGG---------------------QLtTTT~veNfPGFPd-g 66 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGG---------------------QLTTTTDVENFPGFPD-G 66 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCc---------------------eeeeeeccccCCCCCc-c
Confidence 48999999999999999999999999999965322211110 0000000000001111 3
Q ss_pred ecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-cccc-Cceeee-----
Q 017240 188 VSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEYE-EWSYIP----- 260 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~~-~~~~~p----- 260 (375)
+...+|.+.+.++.++.|.+++...|.+++.... .+.|.++.+ .+.+|.||+|+|+....+ .+-. +..++.
T Consensus 67 i~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~ssk-pF~l~td~~-~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSa 144 (322)
T KOG0404|consen 67 ITGPELMDKMRKQSERFGTEIITETVSKVDLSSK-PFKLWTDAR-PVTADAVILATGASAKRLHLPGEGEGEFWQRGISA 144 (322)
T ss_pred cccHHHHHHHHHHHHhhcceeeeeehhhccccCC-CeEEEecCC-ceeeeeEEEecccceeeeecCCCCcchHHhcccch
Confidence 6677899999999999999999888888887766 677777554 799999999999765443 1111 111221
Q ss_pred ---cCCCCC-ccCCCEEEEccCCCCCC
Q 017240 261 ---VGGSLP-NTEQRNLAFGAAASMVH 283 (375)
Q Consensus 261 ---~~~~~~-~~~~~v~liGdaa~~~~ 283 (375)
.++..| +..+-..+||++.++++
T Consensus 145 CAVCDGaapifrnk~laVIGGGDsA~E 171 (322)
T KOG0404|consen 145 CAVCDGAAPIFRNKPLAVIGGGDSAME 171 (322)
T ss_pred hhcccCcchhhcCCeeEEEcCcHHHHH
Confidence 223333 44556778888765544
No 253
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.94 E-value=5.4e-09 Score=103.56 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=81.7
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCCCC-CcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 109 DLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNN-YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~~~-~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
+|||||||++|+.+|..|++. +.+|+|||++....-. .++ +....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~l----------p~~~~---------------------- 50 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL----------PYYIG---------------------- 50 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCc----------chhhc----------------------
Confidence 799999999999999999987 5789999988543210 111 00000
Q ss_pred eeec-HHHHHHHHHHH-HHHCCceEE-EEEEEEEEEcCCceEEEEecC-C--eEEecCEEEEccCCCCcccccccCceee
Q 017240 186 GRVS-RHLLHEELLRR-CVESGVSYL-SSKVESITESTSGHRLVACEH-D--MIVPCRLATVASGAASGKLLEYEEWSYI 259 (375)
Q Consensus 186 ~~v~-~~~l~~~L~~~-~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~-g--~~i~a~~vI~A~G~~s~~~~~~~~~~~~ 259 (375)
+.+. ...+.....+. ..+.|++++ +++|++|+.++. .+.+...+ + .++.+|++|+|||+.+..+. ......+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~-~~~~~~~ 128 (438)
T PRK13512 51 EVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQ-TVTVLNRKTNEQFEESYDKLILSPGASANSLG-FESDITF 128 (438)
T ss_pred CccCCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCCC-EEEEEECCCCcEEeeecCEEEECCCCCCCCCC-CCCCCeE
Confidence 0000 11111111122 245799998 899999988765 44554432 2 24789999999998764332 2111111
Q ss_pred ecCC---------C-CCccCCCEEEEccCCCCC
Q 017240 260 PVGG---------S-LPNTEQRNLAFGAAASMV 282 (375)
Q Consensus 260 p~~~---------~-~~~~~~~v~liGdaa~~~ 282 (375)
.... . ....++++++||++..++
T Consensus 129 ~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 129 TLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 1100 0 012357899999875433
No 254
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.94 E-value=9.5e-09 Score=99.82 Aligned_cols=136 Identities=17% Similarity=0.113 Sum_probs=82.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
.||||||||+||+.+|..|.+.+ .+|+||+++....-+...+...+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~------------------------------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFS------------------------------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHh-------------------------------
Confidence 48999999999999999998864 579999876532111000000000
Q ss_pred eeecHHHHHH-HHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCce-eeecC
Q 017240 186 GRVSRHLLHE-ELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEWS-YIPVG 262 (375)
Q Consensus 186 ~~v~~~~l~~-~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~~-~~p~~ 262 (375)
+.....++.. ...+.+++.|++++ +++|+.++.+.. .|++ ++.++.+|.||+|||+.+..+ +..+.. .+...
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~---~v~~-~~~~~~yd~LVlATG~~~~~p-~i~G~~~v~~~~ 126 (377)
T PRK04965 52 QGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ---VVKS-QGNQWQYDKLVLATGASAFVP-PIPGRELMLTLN 126 (377)
T ss_pred CCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC---EEEE-CCeEEeCCEEEECCCCCCCCC-CCCCCceEEEEC
Confidence 0112223332 23445567899999 899999987644 4555 456899999999999875332 111111 22211
Q ss_pred CC--------CCccCCCEEEEccCC
Q 017240 263 GS--------LPNTEQRNLAFGAAA 279 (375)
Q Consensus 263 ~~--------~~~~~~~v~liGdaa 279 (375)
.. .....+++++||.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~vvViGgG~ 151 (377)
T PRK04965 127 SQQEYRAAETQLRDAQRVLVVGGGL 151 (377)
T ss_pred CHHHHHHHHHHhhcCCeEEEECCCH
Confidence 10 012357899999764
No 255
>PRK10262 thioredoxin reductase; Provisional
Probab=98.94 E-value=1.4e-08 Score=96.38 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=106.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|+|||+|..|+.+|..|++.|.+|+++++...+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence 4799999999999999999999999999987642210
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC------CeEEecCEEEEccCCCCcccc---cc-cCc
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH------DMIVPCRLATVASGAASGKLL---EY-EEW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~------g~~i~a~~vI~A~G~~s~~~~---~~-~~~ 256 (375)
...+.+.+.+.+++.||+++ ++.++++..++++...|++.+ .+++.+|.||+|.|..+.... .+ .+.
T Consensus 184 --~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~ 261 (321)
T PRK10262 184 --EKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELEN 261 (321)
T ss_pred --CHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccC
Confidence 01245666777778899999 999999976543333454432 147999999999997654431 11 112
Q ss_pred eeeecCC-----CCCccCCCEEEEccCCCC-CCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 257 SYIPVGG-----SLPNTEQRNLAFGAAASM-VHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 257 ~~~p~~~-----~~~~~~~~v~liGdaa~~-~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
..+.+.. ......++|+++||.+.. .... ..|+.++..+|..+.+++.+
T Consensus 262 g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~-----~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 262 GYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQA-----ITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred CEEEECCCCcccccccCCCCEEECeeccCCCcceE-----EEEehhHHHHHHHHHHHHHh
Confidence 2333332 233456799999999843 3333 34778888888888888854
No 256
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.94 E-value=1.9e-08 Score=96.83 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=100.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-.|+|||+|+.|+.+|..|.+.|.+ |+|+++...... +
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~---------------------------------------~-- 211 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA---------------------------------------P-- 211 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC---------------------------------------C--
Confidence 4799999999999999999999997 999986531100 0
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe--------------------cCCeEEecCEEEEccCC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--------------------EHDMIVPCRLATVASGA 245 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~--------------------~~g~~i~a~~vI~A~G~ 245 (375)
....+.+.+++.|++++ ++.++++..++. ...|++ .++.++.+|.||+|.|.
T Consensus 212 ------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 212 ------AGKYEIERLIARGVEFLELVTPVRIIGEGR-VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred ------CCHHHHHHHHHcCCEEeeccCceeeecCCc-EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 00122344667899999 888888865432 223321 12357999999999998
Q ss_pred CCcccccc-------cCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 246 ASGKLLEY-------EEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 246 ~s~~~~~~-------~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
.+...... .....+++........++|+++||.+.... -+..|+.+|..+|..|.+.|.
T Consensus 285 ~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~-----~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 285 IPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPS-----KIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcc-----hHHHHHHHHHHHHHHHHHHHh
Confidence 76543211 112233333333444679999999876422 257889999999999988774
No 257
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.93 E-value=9.3e-09 Score=99.35 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=75.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 109 DLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~---G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
+|||||||+||+.+|..|.++ +.+|+|||++....-.. .+...+ .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~~~-------------------------------~ 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPGMI-------------------------------A 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhHHH-------------------------------h
Confidence 489999999999999999744 68999999875321110 000000 0
Q ss_pred eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
+.++..++...+.+.+++.|++++...|++++.+.+ .|.+.+|+++++|++|+|+|+....
T Consensus 49 g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~---~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 49 GHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRR---KVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred eeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccC---EEEECCCCcccccEEEEccCCCCCC
Confidence 123344455555666777899988778999987755 6778888889999999999977643
No 258
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=2.5e-08 Score=101.60 Aligned_cols=34 Identities=41% Similarity=0.517 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
++||||||+|.|||+||+.+++.|.+|+||||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5899999999999999999999999999999987
No 259
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.92 E-value=4.4e-08 Score=100.85 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=102.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|||+.+.....
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------------------------------ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------------------------------ 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------------------------------
Confidence 47999999999999999999999999999987532211
Q ss_pred ecHHHHHHHHHHHH-HHCCceEE-EEEEEEEEEcCCc-eEEEEecC-------C--------eEEecCEEEEccCCCCcc
Q 017240 188 VSRHLLHEELLRRC-VESGVSYL-SSKVESITESTSG-HRLVACEH-------D--------MIVPCRLATVASGAASGK 249 (375)
Q Consensus 188 v~~~~l~~~L~~~~-~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~-------g--------~~i~a~~vI~A~G~~s~~ 249 (375)
++ .++.+.+.+.+ ++.||+++ ++.|+.+..+++. .+.|.+.+ + +++.+|.||+|+|..+..
T Consensus 351 ~d-~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 351 LD-ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred CC-HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 11 23455555544 46899999 9999999865432 24444321 1 379999999999977643
Q ss_pred c-ccc------cCceeeecCCCCCcc------CCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHH
Q 017240 250 L-LEY------EEWSYIPVGGSLPNT------EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 305 (375)
Q Consensus 250 ~-~~~------~~~~~~p~~~~~~~~------~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~ 305 (375)
- +.+ .....++++..+... .++|+++||..+.. ++ .+.|..+|..+++.|.
T Consensus 430 ~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~-~L----a~~A~~qg~~aa~ni~ 493 (659)
T PTZ00153 430 NNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ-ML----AHTASHQALKVVDWIE 493 (659)
T ss_pred ccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc-cC----HHHHHHHHHHHHHHHc
Confidence 2 111 112445655555433 36899999997542 22 2677888888888775
No 260
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.92 E-value=3.9e-08 Score=97.97 Aligned_cols=152 Identities=21% Similarity=0.234 Sum_probs=103.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-+|+|||||..|+.+|..|.+.|. +|+++++..... +.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~--~~--------------------------------------- 312 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE--MP--------------------------------------- 312 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc--CC---------------------------------------
Confidence 589999999999999999999998 899998753110 00
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe-------------------cCCeEEecCEEEEccCCC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-------------------EHDMIVPCRLATVASGAA 246 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~-------------------~~g~~i~a~~vI~A~G~~ 246 (375)
... ...+.+++.||+++ ++.++.+..++++...|++ .++.++.+|.||+|.|..
T Consensus 313 -~~~-----~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 313 -ASE-----EEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred -CCH-----HHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 001 12345667899999 8999888765542222322 123579999999999976
Q ss_pred Ccccc-------cccCceeeecCC-CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 247 SGKLL-------EYEEWSYIPVGG-SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 247 s~~~~-------~~~~~~~~p~~~-~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
+.... .+.+...+.+.. ......++|+++||.+... ..+..|+.+|..+|..|...|.+.
T Consensus 387 p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~-----~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 387 PNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA-----ATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc-----hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 54221 112233344333 2333457899999988321 246789999999999999998753
No 261
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.92 E-value=5.3e-09 Score=107.99 Aligned_cols=182 Identities=14% Similarity=0.213 Sum_probs=111.0
Q ss_pred CccccceeeccCCCCccccccCccchhhcCCcccccccccCCcchhcccccccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 017240 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA 123 (375)
-|+||. .|++ .|++...++++.+...+...+...- .+.++ ...||.. .+...|+|||+|||||++|
T Consensus 1736 grvcpa--pceg----actlgiie~pv~iksie~aiid~af-----~egwm-~p~pp~~--rtg~~vaiigsgpaglaaa 1801 (2142)
T KOG0399|consen 1736 GRVCPA--PCEG----ACTLGIIEPPVGIKSIECAIIDKAF-----EEGWM-KPCPPAF--RTGKRVAIIGSGPAGLAAA 1801 (2142)
T ss_pred CccCCC--CcCc----ceeeecccCCccccchhhHHHHHHH-----HhcCC-ccCCccc--ccCcEEEEEccCchhhhHH
Confidence 477776 3555 9999999999877666654221100 00000 0111111 3457899999999999999
Q ss_pred HHHHHCCCcEEEECCCCCCC--CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHH
Q 017240 124 AESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
-.|-+.|+.|+|+|+....+ ..||+.. --+|.. +.+.-.+.+
T Consensus 1802 dqlnk~gh~v~vyer~dr~ggll~ygipn-----------------------------------mkldk~-vv~rrv~ll 1845 (2142)
T KOG0399|consen 1802 DQLNKAGHTVTVYERSDRVGGLLMYGIPN-----------------------------------MKLDKF-VVQRRVDLL 1845 (2142)
T ss_pred HHHhhcCcEEEEEEecCCcCceeeecCCc-----------------------------------cchhHH-HHHHHHHHH
Confidence 99999999999999986554 2344311 012222 333334556
Q ss_pred HHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCce-----------------eee---
Q 017240 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEWS-----------------YIP--- 260 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~~-----------------~~p--- 260 (375)
.+.||++. ++++-+ .|.. |+-.-..|+||+|+|...+.-++..+.. ...
T Consensus 1846 ~~egi~f~tn~eigk---------~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~ 1915 (2142)
T KOG0399|consen 1846 EQEGIRFVTNTEIGK---------HVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVL 1915 (2142)
T ss_pred HhhCceEEeeccccc---------cccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhcccc
Confidence 67899998 877632 1222 2212357999999997665544331110 000
Q ss_pred cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
.+..+...+++|++||++..+.|..
T Consensus 1916 d~~~~~~~gkkvivigggdtg~dci 1940 (2142)
T KOG0399|consen 1916 DGNYISAKGKKVIVIGGGDTGTDCI 1940 (2142)
T ss_pred ccceeccCCCeEEEECCCCcccccc
Confidence 1122345688999999999988877
No 262
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=1.5e-08 Score=103.72 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
++||||||+|++|+++|+.+++.|.+|+||||....+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 5899999999999999999999999999999987543
No 263
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.91 E-value=1.4e-08 Score=102.49 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=101.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||+.|+.+|..|++.|.+|+|+|+.+...
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 489999999999999999999999999998653210
Q ss_pred ecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEecC---C--eEEecCEEEEccCCCCccc-c----cccC
Q 017240 188 VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKL-L----EYEE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~~---g--~~i~a~~vI~A~G~~s~~~-~----~~~~ 255 (375)
....+.+.+++ .||+++ ++.++++..+++....|++.+ + +++.+|.||+|.|..+... . ....
T Consensus 389 -----~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~ 463 (515)
T TIGR03140 389 -----ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNR 463 (515)
T ss_pred -----hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCC
Confidence 01234445554 599999 999999976544333455432 2 4799999999999765432 1 1122
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
...+.++..+....++|+++||.+..... -+..|+.+|..+|..+.+++.
T Consensus 464 ~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~----~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 464 RGEIVIDERGRTSVPGIFAAGDVTTVPYK----QIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CCeEEECCCCCCCCCCEEEcccccCCccc----eEEEEEccHHHHHHHHHHHHh
Confidence 33444455555556899999999864321 124567777777777777663
No 264
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.91 E-value=1.1e-08 Score=100.80 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=75.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
..+|||||||.||+.+|..|.+.+++|+|||++....- ...+... ..+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-----~~~l~~~---------------------------~~g 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-----TPLLPQT---------------------------TTG 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-----hhhHHHh---------------------------ccc
Confidence 46899999999999999999877899999998753211 1111100 011
Q ss_pred eecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEe--------cCCeEEecCEEEEccCCCCc
Q 017240 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVAC--------EHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~--------~~g~~i~a~~vI~A~G~~s~ 248 (375)
..+...+...+.+.+...+++++..+|++|+.+++ .+.+.. .+|.++.+|++|+|+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~-~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 58 TLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEK-RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCC-EEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 23334455556666666788888889999988766 343321 45668999999999998754
No 265
>PRK12839 hypothetical protein; Provisional
Probab=98.91 E-value=3.5e-08 Score=100.68 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC-CceEEEEe--cCCe-EE-ecCEEEEccCCCCc
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVAC--EHDM-IV-PCRLATVASGAASG 248 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~V~~--~~g~-~i-~a~~vI~A~G~~s~ 248 (375)
....+...|.+.+++.|++++ ++.|+++..++ +.++.|.. .++. .+ .++.||+|+|+++.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 355677788888999999999 99999997653 44555543 3443 34 45899999999876
No 266
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=5.4e-09 Score=93.29 Aligned_cols=126 Identities=19% Similarity=0.242 Sum_probs=75.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCC------------cC------------cHHHHHhcCCchhhhh
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY------------GV------------WEDEFRDLGLEGCIEH 164 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~------------g~------------~~~~l~~~g~~~~~~~ 164 (375)
+|+|||+|++|++||+.|+..|++|+|+||....+... |. +.+.+.+-|+ ..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl----V~ 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL----VD 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc----ee
Confidence 79999999999999999999999999999987544211 00 1111111121 22
Q ss_pred hcccceEEeCCCC--CeeecCCce-eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEE
Q 017240 165 VWRDTVVYIDEDE--PILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLA 239 (375)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~~~~~-~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~v 239 (375)
.|......+.... +..-..+|- .-.-..|.+.|. .+.+|. +++|+.+-..++ .|++++++| ....+|.|
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~-~W~l~~~~g~~~~~~d~v 152 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDN-DWTLHTDDGTRHTQFDDV 152 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCC-eeEEEecCCCcccccceE
Confidence 2322111111110 000111121 111223444333 357778 999999988866 899999776 56789999
Q ss_pred EEccC
Q 017240 240 TVASG 244 (375)
Q Consensus 240 I~A~G 244 (375)
|+|-=
T Consensus 153 vla~P 157 (331)
T COG3380 153 VLAIP 157 (331)
T ss_pred EEecC
Confidence 99865
No 267
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.89 E-value=6.2e-09 Score=110.01 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=71.9
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCcEEEECCCCCCC-CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 110 LVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~---G~~V~liE~~~~~~-~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
|||||||+||+.+|..|.+. +++|+|||+.+... ....+ ...+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L-~~~l~------------------------------- 48 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILL-SSVLQ------------------------------- 48 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccc-cHHHC-------------------------------
Confidence 68999999999999999875 46899999876432 11111 00000
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
+..+...+.....+.+++.|++++ ++.|+.++.+.. .|++.+|.++.+|.||+|||+.+.
T Consensus 49 g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k---~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 49 GEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQK---QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCC---EEEECCCcEeeCCEEEECCCCCcC
Confidence 011122232233445567899999 899999987643 677888888999999999997654
No 268
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.87 E-value=1.7e-08 Score=92.70 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=51.5
Q ss_pred eeecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcC---------Cc----------eEEEEecCC--eEEecCEEEEccC
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITEST---------SG----------HRLVACEHD--MIVPCRLATVASG 244 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~---------~~----------~~~V~~~~g--~~i~a~~vI~A~G 244 (375)
|++++..|...+.+.+...|+.+.+.+|++++.+. ++ .+.|...|+ +.+++..+|.|.|
T Consensus 238 Gwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 238 GWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred cccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 57899999999999999999999988888877552 21 234444444 5799999999999
Q ss_pred CCCcccc
Q 017240 245 AASGKLL 251 (375)
Q Consensus 245 ~~s~~~~ 251 (375)
++|....
T Consensus 318 a~s~QvA 324 (509)
T KOG2853|consen 318 AWSGQVA 324 (509)
T ss_pred ccHHHHH
Confidence 9997653
No 269
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.87 E-value=1.9e-08 Score=101.56 Aligned_cols=36 Identities=36% Similarity=0.531 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~ 142 (375)
.++||||||+| +|+++|+++++.|.+|+||||....
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36899999999 9999999999999999999998653
No 270
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.87 E-value=1.2e-08 Score=108.20 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHC----CCcEEEECCCCCCC-CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 108 LDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~----G~~V~liE~~~~~~-~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
.+|||||+|+||+.+|..|.+. +++|+||++++... ....++ ..+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~-~~~~---------------------------- 54 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLS-SYFS---------------------------- 54 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcch-HhHc----------------------------
Confidence 4799999999999999999764 47999998775432 111110 0000
Q ss_pred CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 183 ~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
.-....+.....+.+++.|++++ ++.|+.++.+. ..|.+.+|.++.+|.+|+|||+.+.
T Consensus 55 ----~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~---~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 55 ----HHTAEELSLVREGFYEKHGIKVLVGERAITINRQE---KVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred ----CCCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC---cEEEECCCcEEECCEEEECCCCCcC
Confidence 00111222223345566899999 88999997764 3677788888999999999998754
No 271
>PRK12831 putative oxidoreductase; Provisional
Probab=98.85 E-value=1.1e-07 Score=94.69 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=101.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||..|+-+|..|.+.|.+|+|+++..... +.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~--m~---------------------------------------- 319 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE--LP---------------------------------------- 319 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc--CC----------------------------------------
Confidence 589999999999999999999999999998653100 00
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEec------------------CC--eEEecCEEEEccCC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE------------------HD--MIVPCRLATVASGA 245 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~------------------~g--~~i~a~~vI~A~G~ 245 (375)
-...+ .+.+.+.||+++ ++.++.+..++++ ...|++. +| .++.+|.||+|.|.
T Consensus 320 a~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 320 ARVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred CCHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 00111 133456799999 8888888654432 2223221 22 36999999999996
Q ss_pred CCcccc-------cccCceeeecCCC-CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 246 ASGKLL-------EYEEWSYIPVGGS-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 246 ~s~~~~-------~~~~~~~~p~~~~-~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
.+.... .......+.+... .....++|+++||..... ..+..|+.+|..+|..|.++|.+
T Consensus 395 ~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-----~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-----ATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 654321 1122233444433 344467999999997532 24689999999999999999864
No 272
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.85 E-value=2.2e-08 Score=100.31 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
..+.+.|.+.+++.|++|+ +++|++|..+++.++++.+.+|+.+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 4689999999999999999 999999999887667888888777899999988775
No 273
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.84 E-value=3.8e-08 Score=108.01 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
+..+||||||+|.||++||+++++.|.+|+||||....+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 345899999999999999999999999999999986543
No 274
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=6.4e-08 Score=99.08 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-CC--eEEec-CEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPC-RLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g--~~i~a-~~vI~A~G~~s~~ 249 (375)
...+...|.+.+++.|++++ ++.|+++..+++.+..|... ++ .++.+ +.||+|+|+++..
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 44577888899999999999 99999988655545556553 33 25776 7899999998764
No 275
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.84 E-value=4.7e-08 Score=100.04 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=77.9
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCcEEEECCCCCCCCCC---c---Cc------------HHHHHh-----cCCch-
Q 017240 109 DLVVIGCGPAGLALAAESA----KLGLNVGLIGPDLPFTNNY---G---VW------------EDEFRD-----LGLEG- 160 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La----~~G~~V~liE~~~~~~~~~---g---~~------------~~~l~~-----~g~~~- 160 (375)
||||||+|.|||+||+.++ +.|.+|+||||......+. | +- .+.++. .++.+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~ 80 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE 80 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence 8999999999999999998 7799999999976432211 2 10 001100 01100
Q ss_pred -hhh----------hhcccceEEeCCCC-CeeecCC---ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC---C
Q 017240 161 -CIE----------HVWRDTVVYIDEDE-PILIGRA---YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST---S 221 (375)
Q Consensus 161 -~~~----------~~~~~~~~~~~~~~-~~~~~~~---~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~---~ 221 (375)
.+. .......+.++... ....... ........+...+...+.+.+++++ ++.|+++..++ +
T Consensus 81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G 160 (614)
T TIGR02061 81 DLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN 160 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC
Confidence 000 00001111111000 0000000 0001233455555566666778999 99999998754 3
Q ss_pred ceEEEEe---cCC--eEEecCEEEEccCCCCc
Q 017240 222 GHRLVAC---EHD--MIVPCRLATVASGAASG 248 (375)
Q Consensus 222 ~~~~V~~---~~g--~~i~a~~vI~A~G~~s~ 248 (375)
.+++|.. .+| ..+.|+.||+|||++..
T Consensus 161 rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 161 RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred eEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 3555543 345 36899999999999764
No 276
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.83 E-value=4.3e-08 Score=95.73 Aligned_cols=137 Identities=23% Similarity=0.252 Sum_probs=101.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.+|+|||+|++|+.+|..|+++|++|+++|+........
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~----------------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL----------------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-----------------------------------------
Confidence 599999999999999999999999999999886443211
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEE--EEecCCeEEecCEEEEccCCCCcccc-cc------cCce
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRL--VACEHDMIVPCRLATVASGAASGKLL-EY------EEWS 257 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~--V~~~~g~~i~a~~vI~A~G~~s~~~~-~~------~~~~ 257 (375)
.. ..+.+.+.+.+++.||+++ +..+..++...+.... +...++..+.+|.++++.|..+.... .. ....
T Consensus 176 ~~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g 254 (415)
T COG0446 176 LD-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGG 254 (415)
T ss_pred hh-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCC
Confidence 00 3577888888889999998 9999999887653222 56667778999999999997774331 11 1122
Q ss_pred eeecCCCCCcc-CCCEEEEccCCCCCCCCC
Q 017240 258 YIPVGGSLPNT-EQRNLAFGAAASMVHPAT 286 (375)
Q Consensus 258 ~~p~~~~~~~~-~~~v~liGdaa~~~~p~~ 286 (375)
.+++....... ...++++||++...++.+
T Consensus 255 ~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~ 284 (415)
T COG0446 255 AVLVDERGGTSKDPDVYAAGDVAEIPAAET 284 (415)
T ss_pred CEEEccccccCCCCCEEeccceEeeecccC
Confidence 33444333333 678999999988887765
No 277
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.83 E-value=4.1e-08 Score=94.55 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred eecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecC-----CeEEecCEEEEccCCCCccccc
Q 017240 187 RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~-----g~~i~a~~vI~A~G~~s~~~~~ 252 (375)
.|+-..|.+.|.+.+.+. |++++ +++|++|...+++.|.|++.| ..++.|++|++..|+++-.+++
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLq 249 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQ 249 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHH
Confidence 577788999999999886 99999 999999999988678887642 2589999999999999876644
No 278
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.82 E-value=8e-08 Score=96.70 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
..+.+.|.+.+++.|++|+ ++.|++|..++++...|++.+|+++.+|.||.|.|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 4688889999999999999 99999998776657788888888899999999999754
No 279
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.82 E-value=1.1e-08 Score=97.55 Aligned_cols=166 Identities=21% Similarity=0.215 Sum_probs=83.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCe------
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPI------ 179 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~------ 179 (375)
.+|+|+||.||++|++|+.|...+ .++..||+.+.+.-.-|+. +....+. ..+..+.....++..+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gml---l~~~~~q---~~fl~Dlvt~~~P~s~~sflnYL 75 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGML---LPGARMQ---VSFLKDLVTLRDPTSPFSFLNYL 75 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG-----SS-B-S---S-TTSSSSTTT-TTSTTSHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccC---CCCCccc---cccccccCcCcCCCCcccHHHHH
Confidence 489999999999999999999887 8999999877543221220 0000000 00000000000000000
Q ss_pred --------eecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc---eEEEEec----CCeEEecCEEEEcc
Q 017240 180 --------LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG---HRLVACE----HDMIVPCRLATVAS 243 (375)
Q Consensus 180 --------~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~---~~~V~~~----~g~~i~a~~vI~A~ 243 (375)
.+...+....+.++.+++.-.+.+.+-.+. +++|++|...++. .+.|++. ++.++.|+.||+|+
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 000111246788999999888877776576 9999999877542 5788773 34689999999999
Q ss_pred CCCCcccccccC----ceeeecC-----CCCCccCCCEEEEccC
Q 017240 244 GAASGKLLEYEE----WSYIPVG-----GSLPNTEQRNLAFGAA 278 (375)
Q Consensus 244 G~~s~~~~~~~~----~~~~p~~-----~~~~~~~~~v~liGda 278 (375)
|..+..+..... ..++... .......++|++||.|
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgG 199 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGG 199 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SS
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCc
Confidence 954333211111 1122211 0113456789999976
No 280
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.81 E-value=2.2e-08 Score=96.32 Aligned_cols=106 Identities=22% Similarity=0.190 Sum_probs=65.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
..+|+|||||++|+++|..|++.|++|+|||+....+..+.. ..+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~---------------------------------~~~~~ 64 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF---------------------------------GIPEF 64 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee---------------------------------cCccc
Confidence 368999999999999999999999999999987543321100 00000
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEE---cCCceEEEEec--CCeEEecCEEEEccCCC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITE---STSGHRLVACE--HDMIVPCRLATVASGAA 246 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~---~~~~~~~V~~~--~g~~i~a~~vI~A~G~~ 246 (375)
..+...+ ....+.+.+.|++++ ++.+..+.. ..+..+..... ++..+.+|.||+|+|++
T Consensus 65 ~~~~~~~-~~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 65 RIPIERV-REGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred ccCHHHH-HHHHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 1122223 333445566799998 877765432 11111221111 12247899999999984
No 281
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.80 E-value=2.9e-08 Score=96.11 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=63.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC------CCc---C-----cHHHHHhcCCchhhhhhcccceEEe
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN------NYG---V-----WEDEFRDLGLEGCIEHVWRDTVVYI 173 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~------~~g---~-----~~~~l~~~g~~~~~~~~~~~~~~~~ 173 (375)
.||+|||||++|+.+|+.|++.|++|+|||+.+.... .++ + ....+...|+.....+.+.... +
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~--~ 80 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLI--M 80 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchh--e
Confidence 5899999999999999999999999999997543311 000 0 0011222332221112221111 1
Q ss_pred CCCCCeeecCCc--eeecHHHHHHHHHHHHHH-CCceEEEEEEEEEE
Q 017240 174 DEDEPILIGRAY--GRVSRHLLHEELLRRCVE-SGVSYLSSKVESIT 217 (375)
Q Consensus 174 ~~~~~~~~~~~~--~~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~ 217 (375)
........ +.. -.+++..+.+.|.+.+++ .+++++..+|+++.
T Consensus 81 ~aad~~~v-PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 81 EAADAHRV-PAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred ecccccCC-CCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 11100000 111 257888899999999877 47998866787764
No 282
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.79 E-value=8.7e-08 Score=94.80 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEc--CCceEEEEec-CCeEEecCEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITES--TSGHRLVACE-HDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~--~~~~~~V~~~-~g~~i~a~~vI~A~G~~s~~ 249 (375)
...+.+.|.+.+++.|++++ ++.|+++..+ ++.++.|... ++.++.++.||+|+|.++..
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGAN 185 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccC
Confidence 45688899999999999999 9999999876 3324445543 33589999999999987653
No 283
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.79 E-value=4e-08 Score=94.92 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=85.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-C----CCcC---------cH----HHHHh-cCCchh--hh----
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-N----NYGV---------WE----DEFRD-LGLEGC--IE---- 163 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~----~~g~---------~~----~~l~~-~g~~~~--~~---- 163 (375)
||+|||+|.|||++|+.|++. ++|+||-|..... + +-|+ +. +.+.. -|+-+. +.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 9999998775432 1 1122 01 11110 122111 00
Q ss_pred ------hhcccceEEeCCCCC--eeecCCc----------eeecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCc-
Q 017240 164 ------HVWRDTVVYIDEDEP--ILIGRAY----------GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSG- 222 (375)
Q Consensus 164 ------~~~~~~~~~~~~~~~--~~~~~~~----------~~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~- 222 (375)
....+..+.|+.+.. ..+...- +.-....+...|.+.+++ .+|+++ +..+.++..+++.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 111112233333321 1111000 013457889999999987 799999 8899998887763
Q ss_pred eEEEEecC--C--eEEecCEEEEccCCCCccc
Q 017240 223 HRLVACEH--D--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 223 ~~~V~~~~--g--~~i~a~~vI~A~G~~s~~~ 250 (375)
..+|.+.+ + .++.++.||+|||+.+...
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 33565532 2 5789999999999776544
No 284
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=4.1e-08 Score=90.52 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=96.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC---CCcCcHH-----------HHH---hcCCchhhhhhcc
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWED-----------EFR---DLGLEGCIEHVWR 167 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~---~~g~~~~-----------~l~---~~g~~~~~~~~~~ 167 (375)
..+||.+|||||..|+++|..+++.|.+|.|+|.....+. +.|+.+. .++ ++|++..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~------ 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN------ 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc------
Confidence 4579999999999999999999999999999997643332 3344221 111 1222110
Q ss_pred cceEEeCCCCCeeecCCceee--cHHHHHH----HHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCe--EEecCEE
Q 017240 168 DTVVYIDEDEPILIGRAYGRV--SRHLLHE----ELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLA 239 (375)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v--~~~~l~~----~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~--~i~a~~v 239 (375)
.. ....+..+ .+..... ...+.+.+.+|+++..+...+... .+.|+..||. .++++.+
T Consensus 92 ---------~~--~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~---~v~V~~~d~~~~~Ytak~i 157 (478)
T KOG0405|consen 92 ---------EE--GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPG---EVEVEVNDGTKIVYTAKHI 157 (478)
T ss_pred ---------cc--cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCC---ceEEEecCCeeEEEecceE
Confidence 00 00001111 1222222 233344556788885554433322 5778888873 4899999
Q ss_pred EEccCCCCcccccccCce-eeecC--CCCCccCCCEEEEccCCCCCCCC
Q 017240 240 TVASGAASGKLLEYEEWS-YIPVG--GSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 240 I~A~G~~s~~~~~~~~~~-~~p~~--~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
++|+|+++..+ +..+.. -+..+ ..++..+++++++|.+..+++.+
T Consensus 158 LIAtGg~p~~P-nIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~A 205 (478)
T KOG0405|consen 158 LIATGGRPIIP-NIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFA 205 (478)
T ss_pred EEEeCCccCCC-CCCchhhccccccccchhhcCceEEEEccceEEEEhh
Confidence 99999887554 221110 11112 23467789999999999999877
No 285
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=1e-07 Score=102.30 Aligned_cols=35 Identities=37% Similarity=0.392 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
++||+|||||.||+++|+.+++.|.+|+||||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999764
No 286
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.78 E-value=7.8e-08 Score=93.61 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=60.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCC------------------------CCcCcHHHHHhcCCchhhhh
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN------------------------NYGVWEDEFRDLGLEGCIEH 164 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~------------------------~~g~~~~~l~~~g~~~~~~~ 164 (375)
||+|||||++|+.+|+.|++.|++|+|||+.+.... ..|+|.+.++.++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~------ 75 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSS------ 75 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCe------
Confidence 799999999999999999999999999997654211 12333333332221
Q ss_pred hcccceEEeCCCCCeeecCCceeecHHHHHHHHHHHHHH-CCceEEEEEEEEEE
Q 017240 165 VWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESIT 217 (375)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~ 217 (375)
......+...... ...-.+++..+.+.+.+++++ .++++++..|+++.
T Consensus 76 ----l~~~~ad~~~Ipa-gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 76 ----LIITAADRHAVPA-GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred ----eeeehhhhhCCCC-CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 1111000100000 111257898999999998877 46777776666554
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=1.1e-07 Score=96.19 Aligned_cols=150 Identities=14% Similarity=0.120 Sum_probs=102.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||..|+.+|..|+..+.+|+|+++.+...
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------------------- 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------------------- 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------------------
Confidence 489999999999999999999999999998663210
Q ss_pred ecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEec---CC--eEEecCEEEEccCCCCccc-cc----ccC
Q 017240 188 VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGKL-LE----YEE 255 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~~~-~~----~~~ 255 (375)
....+.+.+.+ .||+++ ++.++++..+++....|++. +| +++.+|.|++|.|..+... .+ ...
T Consensus 388 -----~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~ 462 (517)
T PRK15317 388 -----ADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNR 462 (517)
T ss_pred -----ccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCC
Confidence 01123344444 599999 99999998764433345543 23 4699999999999766332 11 222
Q ss_pred ceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 256 WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 256 ~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
...+.++..+....++|+++||..+.... -+..|+.+|..+|..+.++|..
T Consensus 463 ~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k----~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 463 RGEIIVDARGATSVPGVFAAGDCTTVPYK----QIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CCcEEECcCCCCCCCCEEECccccCCCCC----EEEEhhhhHHHHHHHHHHHHhh
Confidence 33344444455556899999999865321 1356777777777777777654
No 288
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.2e-08 Score=95.68 Aligned_cols=139 Identities=21% Similarity=0.293 Sum_probs=86.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC-CC---CC--C-cC----cHHHHHhcCCchhhhhhcccceE---
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FT---NN--Y-GV----WEDEFRDLGLEGCIEHVWRDTVV--- 171 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~-~~---~~--~-g~----~~~~l~~~g~~~~~~~~~~~~~~--- 171 (375)
..|||||||||.||+.+|.+.++.|.+.+|+-++.. ++ +| + |+ ..++.+.++ ....++-+...+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl~~rvcD~s~vq~k 104 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GLCSRVCDQSGVQYK 104 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--chHhhhhhhhhhhHH
Confidence 469999999999999999999999999999976532 11 11 1 11 111111111 111111110000
Q ss_pred EeC-CCCCeeecCCceeecHHHHHHHHHHHHHH-CCceEEEEEEEEEEEcCCc-----eEEEEecCCeEEecCEEEEccC
Q 017240 172 YID-EDEPILIGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTSG-----HRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 172 ~~~-~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~~-----~~~V~~~~g~~i~a~~vI~A~G 244 (375)
.++ ...|.. ..+-.++|+..+.+.+.+.+.. .+.+|+...|.++...++. ..+|.+.||..+.++.||+.||
T Consensus 105 ~LNrs~GPAV-wg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTG 183 (679)
T KOG2311|consen 105 VLNRSKGPAV-WGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTG 183 (679)
T ss_pred HhhccCCCcc-cChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeec
Confidence 001 011111 1122368888888888877765 5788887778777654332 5678889999999999999999
Q ss_pred CCC
Q 017240 245 AAS 247 (375)
Q Consensus 245 ~~s 247 (375)
.+-
T Consensus 184 TFL 186 (679)
T KOG2311|consen 184 TFL 186 (679)
T ss_pred cce
Confidence 763
No 289
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.3e-07 Score=85.30 Aligned_cols=173 Identities=23% Similarity=0.217 Sum_probs=93.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCC--CCCCCCCcC---------cHH-HHHhcCCchhhhhhcccceEE
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGV---------WED-EFRDLGLEGCIEHVWRDTVVY 172 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~--~~~~~~~g~---------~~~-~l~~~g~~~~~~~~~~~~~~~ 172 (375)
+.+||++|||||.+||+||.+++..|.+|.++|-- .|.+..||+ .+. .+.+..+-....+......+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 45699999999999999999999999999999833 334444543 332 222211111101100001111
Q ss_pred eCCCCCeeecCCceeecHHHHHHHHHHHHHHCC----ceEEEEEEEEEEEc----CCceEEEEecCC--eEEecCEEEEc
Q 017240 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVESG----VSYLSSKVESITES----TSGHRLVACEHD--MIVPCRLATVA 242 (375)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g----v~i~~~~v~~i~~~----~~~~~~V~~~~g--~~i~a~~vI~A 242 (375)
.++.. +. -+=..+.+...+..+..+ |+++..+|+-+..- +......+..+| +.++|+.+|+|
T Consensus 97 ~~e~~---ik-----hdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIa 168 (503)
T KOG4716|consen 97 VDEQK---IK-----HDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIA 168 (503)
T ss_pred Ccccc---cc-----ccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEE
Confidence 11100 00 111346666666666543 22223333333211 111223333444 46899999999
Q ss_pred cCCCCccc-cc-ccCceeee-cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 243 SGAASGKL-LE-YEEWSYIP-VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 243 ~G~~s~~~-~~-~~~~~~~p-~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
+|.++.-+ ++ ..++.+-. --.++++.+++.+++|.+..+.+.+
T Consensus 169 tG~RPrYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECA 214 (503)
T KOG4716|consen 169 TGLRPRYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECA 214 (503)
T ss_pred ecCCCCCCCCCCceeeeecccccccccCCCCceEEEccceeeeehh
Confidence 99876443 11 12222211 1234678889999999988887765
No 290
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.73 E-value=3.2e-07 Score=96.91 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=101.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-.|+|||||..|+-+|..+.+.|.+ |+|+++..... +.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~--~~--------------------------------------- 609 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEE--MP--------------------------------------- 609 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc--CC---------------------------------------
Confidence 4799999999999999999999997 99998753210 00
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEec---------C---------C--eEEecCEEEEccC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------H---------D--MIVPCRLATVASG 244 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~---------~---------g--~~i~a~~vI~A~G 244 (375)
-...++ +.+++.||+++ .+.++.+..++++ ...|++. + | .++.+|.||+|.|
T Consensus 610 -~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G 683 (752)
T PRK12778 610 -ARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683 (752)
T ss_pred -CCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC
Confidence 001111 34566899998 8888887654432 2233321 1 1 3699999999999
Q ss_pred CCCcccc--c-----ccCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 245 AASGKLL--E-----YEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 245 ~~s~~~~--~-----~~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
..+.... . ...+..+.+........++|+++||.... ...+..|+.+|..+|..|.++|.+
T Consensus 684 ~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g-----~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG-----GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCC-----cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7654321 1 11223333333334445789999999753 124688999999999999998854
No 291
>PRK07233 hypothetical protein; Provisional
Probab=98.73 E-value=1.5e-07 Score=92.93 Aligned_cols=54 Identities=9% Similarity=-0.074 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
.+.+.|.+.+++.|++|+ ++.|++|+.+++ .+.+...++.++.+|.||+|....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGG-GVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-ceEEEEeCCceEECCEEEECCCHH
Confidence 467777788888899999 999999987766 344344566689999999998853
No 292
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.72 E-value=5.1e-08 Score=96.62 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=58.9
Q ss_pred ecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 181 IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 181 ~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
+.+..|.+|+..+.+.|...+.+.|+.|+ ++.|++|....++.+.|+|..| .|++..||.|+|.|..
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHH
Confidence 34455789999999999999999999999 9999999887766779999988 7999999999998864
No 293
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.71 E-value=6.7e-08 Score=95.03 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=61.1
Q ss_pred cccEEEECCCHHHHHHHHHHH-HCCCcEEEECCCCCCC--CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecC
Q 017240 107 ILDLVVIGCGPAGLALAAESA-KLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La-~~G~~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
...|+||||||||+.+|.+|+ +.|++|+|+|+.+..+ ..+|+.++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPd-------------------------------- 86 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPD-------------------------------- 86 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCC--------------------------------
Confidence 357999999999999999765 6799999999986443 12222100
Q ss_pred CceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 184 ~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
...-..+...+.+.+...+++++ +..|.. .++.++= .-.+|.||+|+|+...
T Consensus 87 ---h~~~k~v~~~f~~~~~~~~v~f~gnv~VG~---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 87 ---HIHVKNTYKTFDPVFLSPNYRFFGNVHVGV---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---CccHHHHHHHHHHHHhhCCeEEEeeeEecC---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 01112355555555556777777 444321 1222221 2378999999998753
No 294
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=4.3e-07 Score=87.93 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=91.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC---CcEEEECCCCCCCCCCcCcH----HHHH----hcC--CchhhhhhcccceEE-e
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG---LNVGLIGPDLPFTNNYGVWE----DEFR----DLG--LEGCIEHVWRDTVVY-I 173 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G---~~V~liE~~~~~~~~~g~~~----~~l~----~~g--~~~~~~~~~~~~~~~-~ 173 (375)
++|+|||+|++|+.+|.+|.+.- ..|.|||+...++....... ..+. .+. +++...+++.-.... .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 23999999876654321110 0000 001 111111121111100 0
Q ss_pred CCCCCeeec-CCceeecHHHHHHHHHHHHH----HC--C-ceEEEEEEEEEEEcCC-ceEEEEecCCeEEecCEEEEccC
Q 017240 174 DEDEPILIG-RAYGRVSRHLLHEELLRRCV----ES--G-VSYLSSKVESITESTS-GHRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 174 ~~~~~~~~~-~~~~~v~~~~l~~~L~~~~~----~~--g-v~i~~~~v~~i~~~~~-~~~~V~~~~g~~i~a~~vI~A~G 244 (375)
....+.... ......+|..|-.+|.+++. .. . +..++++++++...++ +.+.++..+|....||.+|+|||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatg 161 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATG 161 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEecc
Confidence 000010000 00012345555555554433 21 2 4444777877776633 36778888998899999999999
Q ss_pred CCCccccc----ccC-ceeee-----cCCCCCccCCCEEEEccCCCCCC
Q 017240 245 AASGKLLE----YEE-WSYIP-----VGGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 245 ~~s~~~~~----~~~-~~~~p-----~~~~~~~~~~~v~liGdaa~~~~ 283 (375)
...+.... +.+ ..++. ....--...++|+++|.+...+|
T Consensus 162 h~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D 210 (474)
T COG4529 162 HSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSID 210 (474)
T ss_pred CCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHH
Confidence 54433322 111 11222 11111233566888887665544
No 295
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.70 E-value=9.1e-08 Score=92.18 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=82.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
..|||||||.+|+.+|..|.+.- .+|+|||++.... |...+ +....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-----~~plL---------------------------~eva~ 51 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-----FTPLL---------------------------YEVAT 51 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-----cchhh---------------------------hhhhc
Confidence 57999999999999999999974 8999999885322 11111 11222
Q ss_pred eeecHHHHHHHHHHHHHHCC-ceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESG-VSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~g-v~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
|.++...+..-+.+.+...+ |++...+|++|+.++. .|++.++..+.+|.+|+|.|+....+
T Consensus 52 g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k---~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 52 GTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAK---KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred CCCChhheeccHHHHhcccCceEEEEEEEEEEcccCC---EEEeCCCccccccEEEEecCCcCCcC
Confidence 34566666777777777554 9988999999998866 78888877899999999999876554
No 296
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.69 E-value=8.8e-08 Score=96.80 Aligned_cols=143 Identities=27% Similarity=0.344 Sum_probs=84.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC--------------cHHHHHh-------cCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV--------------WEDEFRD-------LGL 158 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~--------------~~~~l~~-------~g~ 158 (375)
..++||||||||.|||.||+.+++.|.+|+|+||..+...+ -|+ |.....+ ++-
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 34689999999999999999999999999999997654310 011 1111111 000
Q ss_pred chhhhhhcc-----------cceEEeCCCCCeeecCCce-----------eecHHHHHHHHHHHHHH-CCceEE-EEEEE
Q 017240 159 EGCIEHVWR-----------DTVVYIDEDEPILIGRAYG-----------RVSRHLLHEELLRRCVE-SGVSYL-SSKVE 214 (375)
Q Consensus 159 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----------~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~ 214 (375)
++.+..... ....+..........++++ .-....+...|.+++.+ .+++++ +..+.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 111111110 0001100000000111111 22346788888888887 677888 89999
Q ss_pred EEEEcCCc-eEEE---EecCC--eEEecCEEEEccCCCC
Q 017240 215 SITESTSG-HRLV---ACEHD--MIVPCRLATVASGAAS 247 (375)
Q Consensus 215 ~i~~~~~~-~~~V---~~~~g--~~i~a~~vI~A~G~~s 247 (375)
++..++++ ..+| ...+| ..+.++.||+|||+..
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 98866553 3333 34455 4678999999999876
No 297
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.68 E-value=2e-07 Score=89.64 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=104.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.|++||+|..|+.+|..|...+.+|++|++.+.....
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------ 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------ 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence 46999999999999999999999999999987422110
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecCCeEEecCEEEEccCCCCccc-cc----ccCceeee
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAASGKL-LE----YEEWSYIP 260 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~----~~~~~~~p 260 (375)
+-...+.+.+.+.+++.||+++ ++.+.++..+.++ ...|.+.+|.++.||.||+.+|+.+..- .+ ....+.++
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~ 331 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIK 331 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEe
Confidence 1123577788888889999999 9999999887643 6778999999999999999999876443 11 13455666
Q ss_pred cCCCCCccCCCEEEEccCCCCCC
Q 017240 261 VGGSLPNTEQRNLAFGAAASMVH 283 (375)
Q Consensus 261 ~~~~~~~~~~~v~liGdaa~~~~ 283 (375)
+...++..-.+|+.+||.+++--
T Consensus 332 V~~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 332 VDEFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred ehhceeeccCCcccccceeeccc
Confidence 66666666789999999887653
No 298
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.67 E-value=4.3e-07 Score=91.60 Aligned_cols=56 Identities=9% Similarity=0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
..+.+.|.+.+++.|++|+ ++.|++|..++++.+.|++.+|+++.||.||.|.+..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 5688889999999999999 9999999877665678888888889999999998853
No 299
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.65 E-value=5.5e-07 Score=91.82 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=100.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||++|+.+|..|++.|.+|+++++...+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-------------------------------------------- 179 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-------------------------------------------- 179 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc--------------------------------------------
Confidence 579999999999999999999999999999764221
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEE---ecCCeE--E--ecCE----EEEccCCCCccc-----
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVA---CEHDMI--V--PCRL----ATVASGAASGKL----- 250 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~---~~~g~~--i--~a~~----vI~A~G~~s~~~----- 250 (375)
... .+.+.+ ..+.||+++ ++.|+.+..++. ...+. ..+|++ + .+|. ||+|.|..+...
T Consensus 180 ~~~-~~~~~~---~~~~gV~i~~~~~V~~i~~~~~-v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~ 254 (555)
T TIGR03143 180 CAK-LIAEKV---KNHPKIEVKFNTELKEATGDDG-LRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGV 254 (555)
T ss_pred cCH-HHHHHH---HhCCCcEEEeCCEEEEEEcCCc-EEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhh
Confidence 001 111111 224699999 999999975432 22222 234533 2 3666 999999775432
Q ss_pred ccccCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 251 LEYEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 251 ~~~~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
..+.+.+++.++..+....++|+++||.+.. .+ ..+..|+.+|..+|..|..++...
T Consensus 255 l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~-~~---~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 255 VELDKRGYIPTNEDMETNVPGVYAAGDLRPK-EL---RQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred cccCCCCeEEeCCccccCCCCEEEceeccCC-Cc---chheeHHhhHHHHHHHHHHHHHhh
Confidence 1222334455555555556799999998631 11 134679999999999999888654
No 300
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.63 E-value=1.4e-06 Score=79.76 Aligned_cols=140 Identities=20% Similarity=0.141 Sum_probs=82.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCC-----CcC---cHHHHHhcCCchhhh-----------------
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV---WEDEFRDLGLEGCIE----------------- 163 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-----~g~---~~~~l~~~g~~~~~~----------------- 163 (375)
.|||||+|.|||+++..+...|-.|+|+|+...++.+ -|+ ..+..+.+.+.+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 5999999999999999999998889999998765422 111 112222233222211
Q ss_pred ------------hhcccceEEeC---------CCCCeeecCCceeecHHHHHHHHHHHHHHC------CceEE-EEEEEE
Q 017240 164 ------------HVWRDTVVYID---------EDEPILIGRAYGRVSRHLLHEELLRRCVES------GVSYL-SSKVES 215 (375)
Q Consensus 164 ------------~~~~~~~~~~~---------~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~------gv~i~-~~~v~~ 215 (375)
-.|-...+.+. ...+..+.......+..++...|..++++. -++|. +++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 11111111000 000111100000122345666666655541 27788 999999
Q ss_pred EEEcCCceEEEEecC--C--eEEecCEEEEccCCCCc
Q 017240 216 ITESTSGHRLVACEH--D--MIVPCRLATVASGAASG 248 (375)
Q Consensus 216 i~~~~~~~~~V~~~~--g--~~i~a~~vI~A~G~~s~ 248 (375)
|..+++.+..|+..| | ..+.++.||.|+|+++.
T Consensus 171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 998777666776643 3 36889999999998864
No 301
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.61 E-value=4e-07 Score=85.09 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=97.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
...+|||||..||..+---.+.|.+|+++|-.+..+..
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~------------------------------------------ 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV------------------------------------------ 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc------------------------------------------
Confidence 57999999999999999999999999999976433321
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC---C--eEEecCEEEEccCCCCccc-ccc-------
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKL-LEY------- 253 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~---g--~~i~a~~vI~A~G~~s~~~-~~~------- 253 (375)
+| .++.+.+.+.+.+.|+++. +++|+....+.++.+.|+..+ + ++++||.+.+|.|.++..- +.+
T Consensus 250 mD-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~ 328 (506)
T KOG1335|consen 250 MD-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIEL 328 (506)
T ss_pred cC-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhccccc
Confidence 22 2567777777778999999 999999999888666666543 2 5799999999999665332 111
Q ss_pred cCceeeecCCCCCccCCCEEEEccCCCC
Q 017240 254 EEWSYIPVGGSLPNTEQRNLAFGAAASM 281 (375)
Q Consensus 254 ~~~~~~p~~~~~~~~~~~v~liGdaa~~ 281 (375)
+...-+++.......-+++..|||....
T Consensus 329 D~r~rv~v~~~f~t~vP~i~~IGDv~~g 356 (506)
T KOG1335|consen 329 DKRGRVIVNTRFQTKVPHIYAIGDVTLG 356 (506)
T ss_pred ccccceeccccccccCCceEEecccCCc
Confidence 2333344455455556799999997644
No 302
>PLN02612 phytoene desaturase
Probab=98.60 E-value=1.6e-06 Score=88.53 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecCCeEEecCEEEEccCC
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
.+.+.|.+.+++.|++|+ ++.|++|..++++ .+.|.+.+|+++.+|.||.|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 345566666667899999 9999999886553 34577778888999999999874
No 303
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.59 E-value=1.3e-06 Score=87.59 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEc-CC--c-eEEEEec-CC-----eEEecCEEEEccCCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITES-TS--G-HRLVACE-HD-----MIVPCRLATVASGAAS 247 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~--~-~~~V~~~-~g-----~~i~a~~vI~A~G~~s 247 (375)
..+..-|.+.+++.||+++ +++|++|..+ ++ + +.+|.+. +| .....|.||+|+|+..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 5677888899999999999 9999999875 22 2 4445543 22 2356899999999863
No 304
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.59 E-value=5.6e-07 Score=85.36 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=103.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--------------CCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEE
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVY 172 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~--------------G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~ 172 (375)
....|||||||.|...|.+|+.. -++|++||..+...+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m--------------------------- 270 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM--------------------------- 270 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH---------------------------
Confidence 36899999999999999999753 4689999876422111
Q ss_pred eCCCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCcc
Q 017240 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
-...+.++..+...+.|+++. ++.|.++... ...+.+.+| ++|.+-.+|.|+|..+..
T Consensus 271 ----------------Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 271 ----------------FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred ----------------HHHHHHHHHHHHhhhccceeecccEEEeecCc---EEEEEcCCCceeeecceEEEecCCCCCch
Confidence 012455566666667899999 9899888654 355666666 579999999999977654
Q ss_pred cc-----cccCce--eeecCCCCC-ccCCCEEEEccCC-CCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 250 LL-----EYEEWS--YIPVGGSLP-NTEQRNLAFGAAA-SMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 250 ~~-----~~~~~~--~~p~~~~~~-~~~~~v~liGdaa-~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
.. +.++.. -+-++.-+. .-.++|+.|||.+ +.--+.++ .-|-+.|..+|+.+....+.+.
T Consensus 332 ~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tA---QVA~QqG~yLAk~fn~m~k~~~ 400 (491)
T KOG2495|consen 332 VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTA---QVAEQQGAYLAKNFNKMGKGGN 400 (491)
T ss_pred hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHH---HHHHHHHHHHHHHHHHHhcccC
Confidence 42 111211 111111122 2245799999998 22112233 4567888899999988776554
No 305
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.56 E-value=1.3e-06 Score=86.76 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFT 143 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~ 143 (375)
+|+|||||+|||+||+.|++.| ++|+|+|+....+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 6999999999999999999988 8999999876543
No 306
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.56 E-value=6.2e-07 Score=80.89 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=88.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC------CcEEEECCCCCCCCCC----cCcHH--------HHHhcC--Cchhhh---
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG------LNVGLIGPDLPFTNNY----GVWED--------EFRDLG--LEGCIE--- 163 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G------~~V~liE~~~~~~~~~----g~~~~--------~l~~~g--~~~~~~--- 163 (375)
...|+|||||+.|..+|+.|++.+ ..|+|||+....+..- |+..+ .+..+. +...+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 468999999999999999999997 7899999865433221 11110 111110 111111
Q ss_pred ---hhccc-----ceEEeC------CCCC--------------eeec--CCceeecHHHHHHHHHHHHHHC-CceEEEEE
Q 017240 164 ---HVWRD-----TVVYID------EDEP--------------ILIG--RAYGRVSRHLLHEELLRRCVES-GVSYLSSK 212 (375)
Q Consensus 164 ---~~~~~-----~~~~~~------~~~~--------------~~~~--~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~ 212 (375)
+.|.- .....+ ...+ ..++ ...+++++..|.+.+.+.+++. ||++.-.+
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gk 169 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGK 169 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEee
Confidence 11110 000011 0000 0111 2346899999999999999886 59999888
Q ss_pred EEEEEEcCCceEEEEec---C-CeEEecCEEEEccCCCCcccccc
Q 017240 213 VESITESTSGHRLVACE---H-DMIVPCRLATVASGAASGKLLEY 253 (375)
Q Consensus 213 v~~i~~~~~~~~~V~~~---~-g~~i~a~~vI~A~G~~s~~~~~~ 253 (375)
|.++..+..+...|... + ......+.+|+|.|.|++.+++.
T Consensus 170 v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 170 VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPF 214 (380)
T ss_pred eEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccc
Confidence 88886433322223222 2 34567899999999999887554
No 307
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.54 E-value=1e-06 Score=84.44 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
-.++.+.+.+.+++.|++++ +++|.++...++....|.+.+|.++.+|.||+|.|..+.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 45788899999999999999 999999998877567888999999999999999996544
No 308
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.51 E-value=3e-06 Score=90.92 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=99.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-+|+|||||..|+-+|..+.+.|.+|+++.+.... .+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~--~mpa--------------------------------------- 486 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS--EMPA--------------------------------------- 486 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc--cccc---------------------------------------
Confidence 47999999999999999999999999999765310 1100
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc--eEEEEe---------c--------CC--eEEecCEEEEccCC
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG--HRLVAC---------E--------HD--MIVPCRLATVASGA 245 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~--~~~V~~---------~--------~g--~~i~a~~vI~A~G~ 245 (375)
...++. .+.+.|++++ .+.++.+..++++ ...+++ . +| .++.||.||+|.|.
T Consensus 487 -~~~e~~-----~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 487 -RVEELH-----HALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred -cHHHHH-----HHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 011122 2345699988 7778777654321 222211 1 12 46999999999997
Q ss_pred CCccccc-------ccCceeeecCC-CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 246 ASGKLLE-------YEEWSYIPVGG-SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 246 ~s~~~~~-------~~~~~~~p~~~-~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.+..... ...+..+.+.. ......++|+++||.... ..-+..|+.+|..+|..|..+|...
T Consensus 561 ~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G-----~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 561 TANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG-----GSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred CCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC-----hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6543311 11223333332 123346799999999742 2246899999999999999998753
No 309
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.51 E-value=1.7e-06 Score=85.32 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC-ceEEEEecCCeEEecCEEEEccCCCCc
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACEHDMIVPCRLATVASGAASG 248 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~V~~~~g~~i~a~~vI~A~G~~s~ 248 (375)
..+.+.|.+.+...|.+++ ++.|++|..+++ ..+.|++.+|+++.|+.||......+.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3577777788888999999 999999987653 357888989989999999986665443
No 310
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.49 E-value=4.3e-07 Score=84.86 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=85.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCC-C-CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPF-T-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~-~-~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
...|+|||+||||+.+|..|.++ +.+|.|+|+.+.. + -.||+.++.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHp----------------------------- 70 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHP----------------------------- 70 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCc-----------------------------
Confidence 35899999999999999999984 6899999998632 2 3444422210
Q ss_pred CCceeecHHHHHHHHHHHHHHCCceEE-EEEE-EEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCc---e
Q 017240 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKV-ESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEW---S 257 (375)
Q Consensus 183 ~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v-~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~---~ 257 (375)
.-....+.+.+.+++....++ +..| .+ |.+.+ -+-.+|+||+|.|+.....+...+. +
T Consensus 71 ------EvKnvintFt~~aE~~rfsf~gNv~vG~d----------vsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~ 133 (468)
T KOG1800|consen 71 ------EVKNVINTFTKTAEHERFSFFGNVKVGRD----------VSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSG 133 (468)
T ss_pred ------chhhHHHHHHHHhhccceEEEecceeccc----------ccHHH-HhhcccEEEEEecCCCCcccCCCCccccc
Confidence 011245555666666667776 6555 22 22221 1335899999999988776554221 1
Q ss_pred e------------eecC--CCCCccCCCEEEEccCCCCCCCC
Q 017240 258 Y------------IPVG--GSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 258 ~------------~p~~--~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
+ .|.. ........++++||.+..++|.+
T Consensus 134 V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvA 175 (468)
T KOG1800|consen 134 VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVA 175 (468)
T ss_pred ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhh
Confidence 1 2211 22345688999999999888864
No 311
>PRK13984 putative oxidoreductase; Provisional
Probab=98.49 E-value=4.2e-06 Score=86.43 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=93.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC------cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL------NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~------~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
-.|+|||||..|+-+|..|++.|. +|+++...... ..+.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~-~~~~---------------------------------- 463 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF-EEMP---------------------------------- 463 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc-ccCC----------------------------------
Confidence 489999999999999999998753 67776321100 0000
Q ss_pred cCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec-------------------CCeEEecCEEEE
Q 017240 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-------------------HDMIVPCRLATV 241 (375)
Q Consensus 182 ~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-------------------~g~~i~a~~vI~ 241 (375)
....++. .+.+.||+++ ++.++.+..+++....|++. ++.++.+|.||+
T Consensus 464 ------~~~~e~~-----~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 464 ------ADMEEIE-----EGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred ------CCHHHHH-----HHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 0011121 1335689888 76666665433322223221 124799999999
Q ss_pred ccCCCCccc-cc------cc-CceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 242 ASGAASGKL-LE------YE-EWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 242 A~G~~s~~~-~~------~~-~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
|.|..+... +. .. +...+.+........++|+++||.+.. ..+..|+.+|..+|..|.++|.+
T Consensus 533 aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 533 AIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred eeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhcc
Confidence 999765321 11 10 122233343344556799999999843 34678999999999999998853
No 312
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.49 E-value=3.9e-06 Score=83.52 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecCCe-----EEecCEEEEccCCC
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDM-----IVPCRLATVASGAA 246 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~g~-----~i~a~~vI~A~G~~ 246 (375)
.+.+.|.+.+++.|++|+ ++.|++|...+++ .++|++.+|+ ++.+|.||.|....
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 345666677777899999 9999999865543 4567775554 79999999998753
No 313
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.48 E-value=3.8e-06 Score=89.47 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=94.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHC-C-CcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 108 LDLVVIGCGPAGLALAAESAKL-G-LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~-G-~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
-+|||||||..|+-+|..+.+. | .+|+|+.+..... ..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~--MP-------------------------------------- 708 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE--MP-------------------------------------- 708 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc--cc--------------------------------------
Confidence 4799999999999999999887 4 3899998763110 00
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCC--------------c-eEEEEecCCeEEecCEEEEccCCCCcc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS--------------G-HRLVACEHDMIVPCRLATVASGAASGK 249 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~--------------~-~~~V~~~~g~~i~a~~vI~A~G~~s~~ 249 (375)
-...++.+ +.+.||+++ .+.++.+..++. + ...+.+.++.++.+|.||.|.|..+..
T Consensus 709 --A~~eEle~-----AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt 781 (1019)
T PRK09853 709 --AWREEYEE-----ALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDT 781 (1019)
T ss_pred --ccHHHHHH-----HHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCCh
Confidence 00112222 224689888 777766642211 0 111223344689999999999976532
Q ss_pred c-c-----cccCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 250 L-L-----EYEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 250 ~-~-----~~~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
- . .......+.+...+....++|+++||.+... ..+..|+.+|..+|..|...+.
T Consensus 782 elle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp-----~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 782 ELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP-----STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred hHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc-----hHHHHHHHHHHHHHHHHhhhcC
Confidence 1 1 1122223333333444567999999987432 2457899999999999976554
No 314
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.47 E-value=1.8e-07 Score=67.45 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=29.0
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 112 VIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 112 IIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
|||||++||++|+.|++.|++|+|+|+....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999987654
No 315
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.43 E-value=7.9e-06 Score=88.50 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=100.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-+|+|||||..|+-+|..+.+.|.+ |+++.+..... +.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e--m~--------------------------------------- 610 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE--AP--------------------------------------- 610 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc--CC---------------------------------------
Confidence 5899999999999999999999985 77776542110 00
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEec-----------------CC--eEEecCEEEEccCC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE-----------------HD--MIVPCRLATVASGA 245 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~-----------------~g--~~i~a~~vI~A~G~ 245 (375)
-... ..+.+++.||+++ .+.++.+..++++ ...|++. +| .++.+|.||+|.|.
T Consensus 611 -a~~~-----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 611 -ARIE-----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred -CCHH-----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 0011 1234566899998 8888887654332 2233221 12 36999999999996
Q ss_pred CCcccc-------cccCceeeecCC-----CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 246 ASGKLL-------EYEEWSYIPVGG-----SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 246 ~s~~~~-------~~~~~~~~p~~~-----~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
.+.... .+..+..+.... ......++|+++||..... ..+..|+.+|..+|..|..+|.++.
T Consensus 685 ~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-----~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 685 KANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-----ATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-----cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 654321 112233343332 2334567899999987532 2468999999999999999998653
No 316
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.43 E-value=1.2e-06 Score=85.66 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPF 142 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~ 142 (375)
.|+|||||++||++|+.|+|.+ .+|+|+|++...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 5899999999999999999999 999999997643
No 317
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=1.6e-06 Score=79.71 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCC
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAAS 247 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s 247 (375)
-.-.+.+.|....+..|.-+. +.+|.+.+..++++..|.+.+. ..+++|..|+|+|++-
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 345678888888999999999 9999999988886667777765 4689999999999763
No 318
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.40 E-value=4.7e-06 Score=83.19 Aligned_cols=38 Identities=3% Similarity=0.056 Sum_probs=32.5
Q ss_pred ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccC
Q 017240 206 VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 206 v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G 244 (375)
++|+ ++.|+.|+.+++ .+.|++.+|.++.||.||+|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~-~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGD-RYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCC-EEEEEECCCCEEEeCEEEECCC
Confidence 5688 999999998777 5788888887899999999975
No 319
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.38 E-value=7.7e-06 Score=88.79 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=97.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-.|+|||+|+.|+.+|..|++.|. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 479999999999999999999996 57888865311
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec----CCeEEecCEEEEccCCCCcccc--cccCceee
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE----HDMIVPCRLATVASGAASGKLL--EYEEWSYI 259 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~----~g~~i~a~~vI~A~G~~s~~~~--~~~~~~~~ 259 (375)
...+.+.+++.||+++ ++.|+.+..++. ...|++. +++++.+|.|+++.|..+..-+ +......+
T Consensus 354 -------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~-v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~ 425 (985)
T TIGR01372 354 -------SPEARAEARELGIEVLTGHVVAATEGGKR-VSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAW 425 (985)
T ss_pred -------hHHHHHHHHHcCCEEEcCCeEEEEecCCc-EEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeee
Confidence 1124456678899999 999998875443 3334432 4468999999999997664321 11000000
Q ss_pred e-c-CCCCC-ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 260 P-V-GGSLP-NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 260 p-~-~~~~~-~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. . ....+ ...++|+++||+.+. .++..|+.++..+|..+...+..
T Consensus 426 ~~~~~~~~~~t~v~gVyaaGD~~g~------~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 426 DAAIAAFLPGDAVQGCILAGAANGL------FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred ccccCceecCCCCCCeEEeeccCCc------cCHHHHHHHHHHHHHHHHHHcCC
Confidence 0 0 00011 225689999997733 35677999999999888877754
No 320
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.38 E-value=3.9e-06 Score=77.33 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.+||+|||+|.|||.+|.+|+.+|.+|+|+|+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 5899999999999999999999999999998754
No 321
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.35 E-value=1.6e-05 Score=82.50 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=98.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-.|+|||+|..|+-+|..+.+.|. +|+++++..... +..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~--~~~-------------------------------------- 491 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS--MPG-------------------------------------- 491 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc--CCC--------------------------------------
Confidence 589999999999999999999995 799998653211 000
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEe---c------C---------C--eEEecCEEEEccC
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVAC---E------H---------D--MIVPCRLATVASG 244 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~---~------~---------g--~~i~a~~vI~A~G 244 (375)
...++ ..+++.||+++ .+.++.+..++++ ...|++ . + | .++.+|.||+|.|
T Consensus 492 --~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG 564 (639)
T PRK12809 492 --SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG 564 (639)
T ss_pred --CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcC
Confidence 01112 22456799998 8888888654332 222221 1 1 2 3689999999999
Q ss_pred CCCcc--ccc-----ccCceeeecCC----CCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 245 AASGK--LLE-----YEEWSYIPVGG----SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 245 ~~s~~--~~~-----~~~~~~~p~~~----~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
..+.. +.. ...++.+.++. ......++|+++||.....+ -+..|+.+|..+|..|..+|..
T Consensus 565 ~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~-----~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 565 FQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD-----LVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred CCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch-----HHHHHHHHHHHHHHHHHHHHhh
Confidence 65432 111 12233333322 12334579999999875422 3478999999999999998864
No 322
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.34 E-value=2.4e-05 Score=78.58 Aligned_cols=167 Identities=15% Similarity=0.072 Sum_probs=95.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
-.|+|||||..|+-+|..+.+.|. +|+++|..+....... .. . ..+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~------~~-------------------~-----~~~~-- 331 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARA------KD-------------------N-----PWPE-- 331 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcc------cc-------------------c-----CCCc--
Confidence 479999999999999988888875 6999986542210000 00 0 0000
Q ss_pred eecHHHHHHHHHHHHHHCCceE-E-EEEEEEEEEcC-CceEEEEe--------cCC-----------eEEecCEEEEccC
Q 017240 187 RVSRHLLHEELLRRCVESGVSY-L-SSKVESITEST-SGHRLVAC--------EHD-----------MIVPCRLATVASG 244 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i-~-~~~v~~i~~~~-~~~~~V~~--------~~g-----------~~i~a~~vI~A~G 244 (375)
.....++...+.+..+..|+.+ + .+.++.+..++ +....|++ ++| .++.+|.||+|.|
T Consensus 332 ~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG 411 (485)
T TIGR01317 332 WPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMG 411 (485)
T ss_pred cchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccC
Confidence 0001112223333333456543 2 55555554432 22222321 122 3799999999999
Q ss_pred CC-Cc-cccc-----ccCceeeec-CCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcC
Q 017240 245 AA-SG-KLLE-----YEEWSYIPV-GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHD 311 (375)
Q Consensus 245 ~~-s~-~~~~-----~~~~~~~p~-~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~ 311 (375)
.. +. .+.. ...+..++. ........++|+++||.+... ..+..|+.+|..+|..|..+|.+.
T Consensus 412 ~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~-----~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 412 FVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ-----SLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred cCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc-----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 64 21 1211 122333432 223344467899999987432 235779999999999999999753
No 323
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.31 E-value=3.7e-06 Score=80.92 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~ 142 (375)
...||||||+|.+||++|++|.+.|++|+|+|.+...
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 4589999999999999999999999999999976543
No 324
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.31 E-value=2.9e-06 Score=77.56 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=90.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCCCCC-----CCCcC-----------------------cHHHHHh
Q 017240 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT-----NNYGV-----------------------WEDEFRD 155 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~~~~-----~~~g~-----------------------~~~~l~~ 155 (375)
..||+||||||+.|++.|.+|.-+ +.+|.|+|+...+. .|-|+ .-+.+++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 469999999999999999999876 89999999876432 22221 0011111
Q ss_pred cCCchh-----h--------------hhhc-cc---ceEEeCCCCC-----------eeecCCceeecHHHHHHHHHHHH
Q 017240 156 LGLEGC-----I--------------EHVW-RD---TVVYIDEDEP-----------ILIGRAYGRVSRHLLHEELLRRC 201 (375)
Q Consensus 156 ~g~~~~-----~--------------~~~~-~~---~~~~~~~~~~-----------~~~~~~~~~v~~~~l~~~L~~~~ 201 (375)
..++.. + .+.- .+ ....+...+. ....+..|.+|-..+...+.+..
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF 206 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDF 206 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHH
Confidence 111110 0 0000 00 0001111110 11223446788888888998889
Q ss_pred HHCCceEE-EEEEEEEEEcCCc----eEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 202 VESGVSYL-SSKVESITESTSG----HRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~----~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
+..|-+++ +-++..+..+.+. .+.|.-..+++++++.||-|+|-.|...
T Consensus 207 ~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~ 260 (453)
T KOG2665|consen 207 DFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRC 260 (453)
T ss_pred HHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHH
Confidence 99999999 8899998876552 2334333468999999999999776543
No 325
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.28 E-value=5.3e-06 Score=80.69 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=56.0
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~ 251 (375)
+.+++..+...|.+.+.+ |++++ ++.|++++.+++ .+.|++.+|..++||.||+|+|.++..+.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~~~v~t~~g~~~~a~~vV~a~G~~~~~l~ 194 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-GWQLLDANGEVIAASVVVLANGAQAGQLA 194 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-eEEEEeCCCCEEEcCEEEEcCCccccccc
Confidence 578999999999999998 99999 999999987666 67888888877999999999999986553
No 326
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.24 E-value=2.7e-05 Score=83.43 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=89.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHC-CC-cEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCc
Q 017240 108 LDLVVIGCGPAGLALAAESAKL-GL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~-G~-~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
-+|+|||||..|+-+|..+.+. |. +|+||++.......
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mp---------------------------------------- 706 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMP---------------------------------------- 706 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccc----------------------------------------
Confidence 5799999999999999998886 86 79999876321000
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEE---------------EecCC--eEEecCEEEEccCCCC
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLV---------------ACEHD--MIVPCRLATVASGAAS 247 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V---------------~~~~g--~~i~a~~vI~A~G~~s 247 (375)
....++.. +.+.||+++ ...++.+. ++ .+.+ ...+| .++.+|.||+|.|..+
T Consensus 707 --a~~eEl~~-----aleeGVe~~~~~~p~~I~--~g-~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~P 776 (1012)
T TIGR03315 707 --ASREELEE-----ALEDGVDFKELLSPESFE--DG-TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQV 776 (1012)
T ss_pred --cCHHHHHH-----HHHcCCEEEeCCceEEEE--CC-eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcC
Confidence 00112222 224688887 66666654 11 1111 11123 4689999999999765
Q ss_pred ccc-c-----cccCceeeecCCC-CCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 248 GKL-L-----EYEEWSYIPVGGS-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 248 ~~~-~-----~~~~~~~~p~~~~-~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
..- . .......+.+... .....++|+++||++.. | ..+..|+.+|..+|..|..
T Consensus 777 nt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G--P---~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 777 DTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG--P---ATIVEAIADGRKAANAILS 837 (1012)
T ss_pred ChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC--c---cHHHHHHHHHHHHHHHHhc
Confidence 321 1 1122233333332 33445799999998754 2 2468899999999998864
No 327
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.16 E-value=8.3e-06 Score=77.15 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=104.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHC----CCcEEE-ECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 108 LDLVVIGCGPAGLALAAESAKL----GLNVGL-IGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~----G~~V~l-iE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
-.|-|||+|..|..+|+.|.+. |.+|.- ||...+
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------------------------------------- 386 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------------------------------------- 386 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC-----------------------------------------
Confidence 4699999999999999999874 445443 332210
Q ss_pred CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccc-c-----ccC
Q 017240 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL-E-----YEE 255 (375)
Q Consensus 183 ~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~-~-----~~~ 255 (375)
++-+-+..|.++-.+..++.||.++ +..|.++..... .+.++++||.++..|+||+|+|--+..-+ . .++
T Consensus 387 --m~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~ 463 (659)
T KOG1346|consen 387 --MEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-NLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDE 463 (659)
T ss_pred --hhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-ceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeec
Confidence 0113344577777788888999999 999999877655 57788999999999999999997654321 1 111
Q ss_pred -ceeeecCCCCCccCCCEEEEccCCCCCCCCChHH----HHHHHhhHHHHHHHHHHHHh
Q 017240 256 -WSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYS----VVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 256 -~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~G----i~~al~~a~~~a~~i~~~l~ 309 (375)
.+-+.+.. .-....++.+.||++.+.|+.-|-- --.+.-+++++++.+.-+.+
T Consensus 464 ~lGGfrvna-eL~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 464 KLGGFRVNA-ELKARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred ccCcEEeeh-eeecccceeeecchhhhhcccccceeccccccceeeceecccccccccC
Confidence 11111111 1234678999999999999987632 12345556666655554443
No 328
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.14 E-value=1.4e-06 Score=84.83 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=46.9
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecC---C--eEEecCEEEEccCCCCccccc
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEH---D--MIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~---g--~~i~a~~vI~A~G~~s~~~~~ 252 (375)
+.+...+.-.+.=-+..+|..+. ..+|.++..++++ +.++...| | .+|+|+.||.|||.++..+.+
T Consensus 220 Q~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 220 QHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred CCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 34455566666666677899998 8899998877664 33444433 3 468999999999999866544
No 329
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=4.1e-05 Score=71.10 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
...++|||||..++..|--++-.|-++.++=|.......+
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F---------------------------------------- 228 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF---------------------------------------- 228 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch----------------------------------------
Confidence 3689999999999999999999999999986654322111
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc-ccc-------cCce
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL-LEY-------EEWS 257 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~-~~~-------~~~~ 257 (375)
...+...+.+.++..|++++ ++.++.+....++...+.+..|.....|.|+.|+|..+... +.+ ....
T Consensus 229 ---D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g 305 (478)
T KOG0405|consen 229 ---DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNG 305 (478)
T ss_pred ---hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCC
Confidence 12355666777778899999 99999999887755666666664455999999999553322 222 1222
Q ss_pred eeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHH
Q 017240 258 YIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYI 307 (375)
Q Consensus 258 ~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~ 307 (375)
.+-++......-+.++.+||..+-++.. ..|+..+..++..+...
T Consensus 306 ~IivDeYq~Tnvp~I~avGDv~gk~~LT-----PVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 306 AIIVDEYQNTNVPSIWAVGDVTGKINLT-----PVAIAAGRKLANRLFGG 350 (478)
T ss_pred CEEEeccccCCCCceEEeccccCcEecc-----hHHHhhhhhHHHHhhcC
Confidence 2222333334456899999998877766 56788888877777553
No 330
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=3.4e-06 Score=84.24 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
....+|||||||+|||+||.+|...|++|+|+|.+...+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 345799999999999999999999999999999766443
No 331
>PRK07208 hypothetical protein; Provisional
Probab=98.05 E-value=4.9e-06 Score=83.41 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
..||+|||||++||++|+.|+++|++|+|+|+....+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999876443
No 332
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.04 E-value=3.2e-05 Score=70.55 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=37.8
Q ss_pred ccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHH
Q 017240 267 NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYI 307 (375)
Q Consensus 267 ~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~ 307 (375)
...++++++|||+.+.||.+|+||+.|+.|+..+++.+...
T Consensus 127 ~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 127 NWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred CCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 44678999999999999999999999999999999998876
No 333
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.8e-05 Score=69.32 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=102.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.||+|||||.+.+-.|+.|++.+.+|+||=+...+.
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 499999999999999999999999999997764321
Q ss_pred ecHHHHHHHHHHHHHHC-CceEE-EEEEEEEEEcCCceEEEEecC--C--eEEecCEEEEccCCCCccc--cc---ccCc
Q 017240 188 VSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAASGKL--LE---YEEW 256 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~V~~~~--g--~~i~a~~vI~A~G~~s~~~--~~---~~~~ 256 (375)
. ...+.+++.+. +++++ ++.++.+.-++ ...|++++ + .++.++.|+++.|..+..- .. ..+.
T Consensus 180 --a---~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~ 252 (305)
T COG0492 180 --A---EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDEN 252 (305)
T ss_pred --c---CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCC
Confidence 0 23445555554 79998 99999988664 22344443 3 4789999999999665431 11 1345
Q ss_pred eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHh
Q 017240 257 SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILK 309 (375)
Q Consensus 257 ~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~ 309 (375)
.++.........-++++.+||....... -+..|..++..+|..+.+++.
T Consensus 253 g~I~v~~~~~TsvpGifAaGDv~~~~~r----qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 253 GYIVVDEEMETSVPGIFAAGDVADKNGR----QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CcEEcCCCcccCCCCEEEeEeeccCccc----EEeehhhhHHHHHHHHHHHhh
Confidence 5555555566667899999998766532 234566677777766666664
No 334
>PLN02576 protoporphyrinogen oxidase
Probab=98.02 E-value=6e-06 Score=83.20 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHC-CCcEEEECCCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFT 143 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~-G~~V~liE~~~~~~ 143 (375)
.+||+|||||++||++|+.|++. |++|+|+|+....+
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 47999999999999999999999 99999999986544
No 335
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.01 E-value=6.6e-06 Score=79.40 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
+||+|||||++|+++|..|++.|.+|+|||++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6999999999999999999999999999998653
No 336
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=74.20 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
..+|+|||+|++||+||+.|+++ .+|+|+|.+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~r 41 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRR 41 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEecccc
Confidence 46899999999999999999986 69999998653
No 337
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.99 E-value=7.1e-06 Score=82.59 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-----eEEecCEEEEccCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAA 246 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-----~~i~a~~vI~A~G~~ 246 (375)
..|.+.|.+.+++.|++|+ ++.|++|..+++....|.+.++ +++.+|.||.+....
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4678888888888999999 9999999887664344544443 579999999997753
No 338
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=7.9e-06 Score=80.02 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
.|+|+|||.|||++|++|+++|++|+|+|.+...+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 69999999999999999999999999999886544
No 339
>PLN02268 probable polyamine oxidase
Probab=97.93 E-value=1e-05 Score=80.08 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
+|+|||||++||+||+.|.+.|++|+|+|+....+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 79999999999999999999999999999876543
No 340
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.93 E-value=3.8e-05 Score=74.29 Aligned_cols=102 Identities=14% Similarity=0.276 Sum_probs=71.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC--cEEEECCCC--CCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeec
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDL--PFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~--~V~liE~~~--~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
...++|||+|++|..|+..+.+.|. +++++-+.. +.... .|.. ..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~------~Ls~-------------~~------------ 122 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA------RLSK-------------FL------------ 122 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch------hccc-------------ce------------
Confidence 4689999999999999999999986 566664332 11100 0000 00
Q ss_pred CCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 183 ~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
......+.....+..++.|++++ ++.|+.++.... +|.+.+|+++.++.+|+|||..
T Consensus 123 ----~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K---~l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 123 ----LTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASK---TLVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred ----eeccccccccChhhHhhcCceEEEcceeEEeecccc---EEEeCCCceeecceEEEeecCc
Confidence 00111233344456677999999 999999998865 7889999999999999999983
No 341
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.92 E-value=1e-05 Score=80.69 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHC----CCcEEEECCCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPFT 143 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~----G~~V~liE~~~~~~ 143 (375)
.||+|||||++||++|+.|+++ |++|+|+|++...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 5899999999999999999999 99999999886543
No 342
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.90 E-value=7.5e-06 Score=76.65 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC-CcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~ 140 (375)
||+||||+|++|+.+|..|++.| .+|+|||+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 79999999999999999999997 6999999875
No 343
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=0.00012 Score=69.49 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=85.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCC-CcEEEECCCCCCCCCCcCcH--HHHHhcCCchhhhhhcccceEEeCCCCC---
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNYGVWE--DEFRDLGLEGCIEHVWRDTVVYIDEDEP--- 178 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~~~~~~~g~~~--~~l~~~g~~~~~~~~~~~~~~~~~~~~~--- 178 (375)
+..+|++.||-||+-|++|+.|...+ .+++.+|+.+.+.-.-|+.. ..++.--+.+. ....++..+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDL--------VTl~~PTs~ySF 74 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDL--------VTLVDPTSPYSF 74 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhh--------ccccCCCCchHH
Confidence 34589999999999999999999876 78999999987653333311 00000000010 000000000
Q ss_pred ----eeecC-------CceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcC-CceEE--EEecCCeEEecCEEEEcc
Q 017240 179 ----ILIGR-------AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRL--VACEHDMIVPCRLATVAS 243 (375)
Q Consensus 179 ----~~~~~-------~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~--V~~~~g~~i~a~~vI~A~ 243 (375)
...++ ..-.+.|.++.+++.-.+... -.++ +++|++|..-+ +.... +.+.++.+++|+.+|+.+
T Consensus 75 LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~ 153 (436)
T COG3486 75 LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGV 153 (436)
T ss_pred HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEcc
Confidence 00011 112578899999988777766 5566 99999774332 22333 566777799999999999
Q ss_pred CCCCccc
Q 017240 244 GAASGKL 250 (375)
Q Consensus 244 G~~s~~~ 250 (375)
|..+..+
T Consensus 154 G~~P~IP 160 (436)
T COG3486 154 GTQPYIP 160 (436)
T ss_pred CCCcCCC
Confidence 9766554
No 344
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.89 E-value=3.9e-05 Score=73.54 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
..+...+.+-+++.|.+|+ ++.|.+|..+.+..++|.+.||+++.++.||-=++.+
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 3678888999999999999 9999999988877899999999999998777555533
No 345
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.88 E-value=5.9e-05 Score=76.49 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=105.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCceee
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRV 188 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 188 (375)
.-+|||||.-|+.+|..|...|.+|.|++=.+..- .. ++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM------er-----------------------------------QL 185 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM------ER-----------------------------------QL 185 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHH------HH-----------------------------------hh
Confidence 47999999999999999999999999997432110 01 12
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc----ccCceeeecCC
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE----YEEWSYIPVGG 263 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~----~~~~~~~p~~~ 263 (375)
|+ .-...|.+.+++.|++++ +...+.+...+. ...|.++||..+.+|.||.|+|..+..-.. +.-..-+++..
T Consensus 186 D~-~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~-~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd 263 (793)
T COG1251 186 DR-TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK-VEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVND 263 (793)
T ss_pred hh-HHHHHHHHHHHhhcceeecccchhhhhcCcc-eeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeecc
Confidence 22 123456666777999999 888777766433 778999999999999999999987654311 11112355566
Q ss_pred CCCccCCCEEEEccCCCCCCCCChHHH-HHHHhhHHHHHHHHHH
Q 017240 264 SLPNTEQRNLAFGAAASMVHPATGYSV-VRSLSEAPNYASAIAY 306 (375)
Q Consensus 264 ~~~~~~~~v~liGdaa~~~~p~~G~Gi-~~al~~a~~~a~~i~~ 306 (375)
......+.|.++|..+....-. ||+ .-+.++++.+|+.+..
T Consensus 264 ~mqTsdpdIYAvGEcae~~g~~--yGLVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 264 YMQTSDPDIYAVGECAEHRGKV--YGLVAPLYEQAKVLADHLCG 305 (793)
T ss_pred cccccCCCeeehhhHHHhcCcc--ceehhHHHHHHHHHHHHhcc
Confidence 6677788999999977554433 332 3455666666655543
No 346
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=3.5e-05 Score=71.03 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=62.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC---------------CCCcCcHHHHHhcCCchhhhhhcccceEE
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---------------NNYGVWEDEFRDLGLEGCIEHVWRDTVVY 172 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~---------------~~~g~~~~~l~~~g~~~~~~~~~~~~~~~ 172 (375)
..|-|||||.||..+|++++++|++|.|+|-.+... +.++.- ......|+-..-++...+..+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~-~~~navGlLk~EMR~lgSlii~ 82 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSD-ALTNAVGLLKAEMRLLGSLIIE 82 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccc-hhhhhhHHHHHHHHHhhhHHhh
Confidence 358899999999999999999999999999543211 011100 0000111111111111111111
Q ss_pred eCCCCCeeecCCceeecHHHHHHHHHHHHHHC-CceEEEEEEEEEEE
Q 017240 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVES-GVSYLSSKVESITE 218 (375)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~v~~i~~ 218 (375)
..+.....-+.. --+||..|.+.+.+.++++ .|+|+..+|+.+-.
T Consensus 83 ~Ad~~~VPAGgA-LAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 83 AADKHRVPAGGA-LAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred hhhhccCCCCce-eeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 100000011111 1589999999999999874 68888888888754
No 347
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=2.6e-05 Score=71.77 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=33.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
+|.+|||+|.+|+.+|..|++.|.+|+||||+...+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 799999999999999999999999999999987655
No 348
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00012 Score=66.72 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=47.1
Q ss_pred ecHHHHHHHHHHHHHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCcccccccCceeeecCC
Q 017240 188 VSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEEWSYIPVGG 263 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~~~~~~~~p~~~ 263 (375)
.....+..+|.+++.+.|+++..-+|.++.+-.+ -.+|.||.|+|-++..+...+. ++|..+
T Consensus 148 sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~------------~~~DVivNCtGL~a~~L~gDd~--~yPiRG 209 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTENGVEFVQRRVESLEEVAR------------PEYDVIVNCTGLGAGKLAGDDD--LYPIRG 209 (342)
T ss_pred ccchhhhHHHHHHHHhcCcEEEEeeeccHHHhcc------------CCCcEEEECCccccccccCCcc--eeeccc
Confidence 5677899999999999999999888887754311 2589999999999988865332 455443
No 349
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.81 E-value=0.00017 Score=68.90 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
.+...|||+|+|-+|.++...|-..-++|+||.++.-+.-+ +.....+
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFT--------------------------------PLLpS~~ 100 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFT--------------------------------PLLPSTT 100 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEe--------------------------------eccCCcc
Confidence 34578999999999999999999889999999987422110 0111223
Q ss_pred ceeecHHHHHHHHHHHHHHC--CceEEEEEEEEEEEcCCceEEE--EecCC----eEEecCEEEEccCCCCcccc-c-cc
Q 017240 185 YGRVSRHLLHEELLRRCVES--GVSYLSSKVESITESTSGHRLV--ACEHD----MIVPCRLATVASGAASGKLL-E-YE 254 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~--gv~i~~~~v~~i~~~~~~~~~V--~~~~g----~~i~a~~vI~A~G~~s~~~~-~-~~ 254 (375)
.|.++-..+.+-+...+... ++.++.++..+++.+.. .+.+ .+.++ ..+.+|++|+|+|+.+..+- + ..
T Consensus 101 vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k-~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~ 179 (491)
T KOG2495|consen 101 VGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNK-KVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVE 179 (491)
T ss_pred ccceeehhhhhhHHHHhhccCCCceEEecccEeeccccc-EEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchh
Confidence 34455555666666655543 56777888888887765 3333 33444 47899999999999877651 1 11
Q ss_pred Cc-----------------------eeee-cCCCCCccCCCEEEEccCCCCCCCC
Q 017240 255 EW-----------------------SYIP-VGGSLPNTEQRNLAFGAAASMVHPA 285 (375)
Q Consensus 255 ~~-----------------------~~~p-~~~~~~~~~~~v~liGdaa~~~~p~ 285 (375)
+. ...| ...+....--++++||++..+++.+
T Consensus 180 e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA 234 (491)
T KOG2495|consen 180 ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA 234 (491)
T ss_pred hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence 11 0111 1222223344789999999888765
No 350
>PRK02106 choline dehydrogenase; Validated
Probab=97.78 E-value=2.8e-05 Score=79.58 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCcEEEECCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL 140 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~-~G~~V~liE~~~ 140 (375)
..||+||||+|++|+.+|..|++ .|++|+|||+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45999999999999999999999 799999999874
No 351
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.76 E-value=3.2e-05 Score=78.00 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
|||+|||+||+|+++|..|++.|++|+|||+....+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999886554
No 352
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.75 E-value=0.00021 Score=72.38 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred eeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEec---CC--eEEecCEEEEccCCCCccc
Q 017240 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGKL 250 (375)
Q Consensus 186 ~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~---~g--~~i~a~~vI~A~G~~s~~~ 250 (375)
+.+++..+...+.+.+.+.|++++ +++|+++..++++.+.|++. +| .++.|+.||.|+|.|+..+
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l 193 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRI 193 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHH
Confidence 578999999999999999999999 99999998876644455542 23 3799999999999998654
No 353
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.72 E-value=1.5e-05 Score=73.07 Aligned_cols=103 Identities=18% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CC-cEEEECCCCCCC--CCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCee
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKL-GL-NVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPIL 180 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~-G~-~V~liE~~~~~~--~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
.+++.|+|||||.+|+..|..+.++ |. +|.|||+...-- ..|-+. .-|+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLv-----GgGl~--------------------- 90 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLV-----GGGLK--------------------- 90 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEe-----ccchh---------------------
Confidence 4579999999999999999999765 43 799999763210 000000 00000
Q ss_pred ecCCceeecHHHHHHHHHHH--HHHCCceEEEEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 181 IGRAYGRVSRHLLHEELLRR--CVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 181 ~~~~~~~v~~~~l~~~L~~~--~~~~gv~i~~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
.++..=.+. +.-.|++++..+|+++..+++ +|.+.+|++|.+|++|+|.|..-
T Consensus 91 -----------~l~~srr~~a~liP~~a~wi~ekv~~f~P~~N---~v~t~gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 91 -----------SLDSSRRKQASLIPKGATWIKEKVKEFNPDKN---TVVTRGGEEISYDYLVIAMGIQL 145 (446)
T ss_pred -----------hhhhccCcccccccCCcHHHHHHHHhcCCCcC---eEEccCCcEEeeeeEeeeeecee
Confidence 000000000 001233434445666666665 78889999999999999999753
No 354
>PLN02568 polyamine oxidase
Probab=97.72 E-value=4.4e-05 Score=77.45 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCC
Q 017240 193 LHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (375)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~ 245 (375)
|.+.|.+.+. +-.|+ ++.|+.|...++ .+.|++.+|.++.||.||++.-.
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~-~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDE-PVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCC-eEEEEEcCCCEEEcCEEEEcCCH
Confidence 4444444432 23577 999999998766 68888888888999999998653
No 355
>PLN02529 lysine-specific histone demethylase 1
Probab=97.71 E-value=4.8e-05 Score=79.29 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
....||+|||||++|+++|..|+++|++|+|+|+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 3457999999999999999999999999999998653
No 356
>PLN02676 polyamine oxidase
Probab=97.69 E-value=5.7e-05 Score=75.86 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=34.8
Q ss_pred ceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCC
Q 017240 206 VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (375)
Q Consensus 206 v~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~ 246 (375)
.+|+ ++.|++|..+++ .+.|++.+|+++.||+||+|....
T Consensus 245 ~~I~l~~~V~~I~~~~~-gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 245 PRLKLNKVVREISYSKN-GVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred CceecCCEeeEEEEcCC-cEEEEECCCCEEEeCEEEEccChH
Confidence 5688 999999998776 688999999899999999998744
No 357
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.62 E-value=5.9e-05 Score=75.53 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCceEE-EEEEEEEEEcC--Cc---eEEEEecCC---eEEecCEEEEccCCCC
Q 017240 193 LHEELLRRCVESGVSYL-SSKVESITEST--SG---HRLVACEHD---MIVPCRLATVASGAAS 247 (375)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~---~~~V~~~~g---~~i~a~~vI~A~G~~s 247 (375)
+.+.+.+.+++.|++|+ +++|++|..++ ++ .+.|.+.+| +++.+|.||+|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 55668888888999999 99999998754 21 344455443 5689999999999653
No 358
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.57 E-value=0.00056 Score=65.45 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=67.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCC--cEEEECCCCCCCC----CC--cC-cHHHHHh-cCCchhhhhhcccceEEeCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLPFTN----NY--GV-WEDEFRD-LGLEGCIEHVWRDTVVYIDE 175 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~--~V~liE~~~~~~~----~~--g~-~~~~l~~-~g~~~~~~~~~~~~~~~~~~ 175 (375)
....|+|||||-++..++..|.+.+. +|++|=+...+.. .+ .+ .++..+. .+++........
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l-------- 260 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELL-------- 260 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHH--------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHH--------
Confidence 45789999999999999999999875 7999977653321 11 00 1111111 011111000000
Q ss_pred CCCeeec-CCceeecHHHHHHH---HH-HHHH-HCCceEE-EEEEEEEEEcCCceEEEEecC-----CeEEecCEEEEcc
Q 017240 176 DEPILIG-RAYGRVSRHLLHEE---LL-RRCV-ESGVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVAS 243 (375)
Q Consensus 176 ~~~~~~~-~~~~~v~~~~l~~~---L~-~~~~-~~gv~i~-~~~v~~i~~~~~~~~~V~~~~-----g~~i~a~~vI~A~ 243 (375)
.... ..++.++...+.+. +. +.+. +.-+.++ +++|+++...+++.+.+++.+ ..++.+|.||+||
T Consensus 261 ---~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilAT 337 (341)
T PF13434_consen 261 ---REQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILAT 337 (341)
T ss_dssp ---HHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE--
T ss_pred ---HHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcC
Confidence 0001 13445665433222 22 2222 2348899 999999998875467777654 2578999999999
Q ss_pred CC
Q 017240 244 GA 245 (375)
Q Consensus 244 G~ 245 (375)
|-
T Consensus 338 Gy 339 (341)
T PF13434_consen 338 GY 339 (341)
T ss_dssp -E
T ss_pred Cc
Confidence 93
No 359
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.57 E-value=0.0001 Score=77.33 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
...+|+|||||++|+++|+.|++.|++|+|+|+...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 457999999999999999999999999999998754
No 360
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.56 E-value=6.1e-05 Score=65.31 Aligned_cols=34 Identities=38% Similarity=0.539 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~--G~~V~liE~~~ 140 (375)
..||+|||+|.+||++|+..+++ ..+|.|||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 36999999999999999999966 57999999763
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.55 E-value=0.00039 Score=70.71 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=73.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHC---CCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~---G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
..++|||.|++|..+.-++.+. -++|+++-..+...-+.-.... .+...
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~--------------------vl~~~-------- 55 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS--------------------VLAGE-------- 55 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc--------------------ccCCC--------
Confidence 4799999999999999999883 4689999433322111000000 00000
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
-+..++.-.-.+..+++||+++ +.+|+.|+.+.. .|+++.|.++.+|.+|+|||+.+..+
T Consensus 56 ---~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k---~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 56 ---KTAEDISLNRNDWYEENGITLYTGEKVIQIDRANK---VVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred ---ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcc---eEEccCCcEeecceeEEecCcccccc
Confidence 1112233333466778999999 999999988754 78899999999999999999765443
No 362
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.54 E-value=8e-05 Score=66.64 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=25.6
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEECCC
Q 017240 110 LVVIGCGPAGLALAAESAKL--GLNVGLIGPD 139 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~--G~~V~liE~~ 139 (375)
.+|||||+||.+||-.|+.. ..+|+||-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 58999999999999999986 4578888654
No 363
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.51 E-value=0.00096 Score=64.38 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCC-eEEecCEEEEccCCCCcc
Q 017240 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGK 249 (375)
Q Consensus 189 ~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g-~~i~a~~vI~A~G~~s~~ 249 (375)
....+.+.|...+++.||+++ +++|++| +++ .+.|.+.++ ..++||.||+|+|+.|.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~~~v~~~~~~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-TLRFETPDGQSTIEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-cEEEEECCCceEEecCEEEEcCCCcccc
Confidence 467899999999999999999 9999999 233 467776533 479999999999987643
No 364
>PLN02487 zeta-carotene desaturase
Probab=97.49 E-value=0.00013 Score=74.36 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcC--Cc---eEEEEe---cCCeEEecCEEEEccCCC
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITEST--SG---HRLVAC---EHDMIVPCRLATVASGAA 246 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~---~~~V~~---~~g~~i~a~~vI~A~G~~ 246 (375)
.|.+.+.+.+++.|++|+ ++.|..|..+. ++ .+.|++ .+++.+.+|.||.|++.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 467778888889999999 99999998863 22 356666 334578999999999965
No 365
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.47 E-value=0.00037 Score=66.16 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=57.4
Q ss_pred ceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccccc
Q 017240 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 185 ~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~~~ 252 (375)
-+.+++..+...|.+.+.+.|++++ +++|+++..+++....|.+.+| +++||.||+|+|+++..+.+
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~ 198 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP 198 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc
Confidence 3578999999999999999999999 9999999886664556788777 89999999999999876533
No 366
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0011 Score=61.49 Aligned_cols=151 Identities=16% Similarity=0.123 Sum_probs=103.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
-.-+|||||..+|.||-.|+-.|++|+|.-|..... .
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr-------------------------------------------G 235 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR-------------------------------------------G 235 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc-------------------------------------------c
Confidence 468999999999999999999999999987653211 0
Q ss_pred ecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecC---C--eEEecCEEEEccCCCCccc-cccc------
Q 017240 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKL-LEYE------ 254 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~---g--~~i~a~~vI~A~G~~s~~~-~~~~------ 254 (375)
+| +++.+.+.+..++.|+++. .+..+.++.-+++...|...+ + .+-.+|.|+.|.|..+... +.++
T Consensus 236 FD-qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~ 314 (503)
T KOG4716|consen 236 FD-QDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKT 314 (503)
T ss_pred cc-HHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceee
Confidence 12 2567777788888999999 777777777666544454322 2 2456899999999655332 2221
Q ss_pred --CceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHH
Q 017240 255 --EWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAY 306 (375)
Q Consensus 255 --~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~ 306 (375)
...-+|........-+.|+.|||---.-.-++ ..|+++++.+|+.|-.
T Consensus 315 n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELT----PvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 315 NEKSGKIPVDDEEATNVPYVYAVGDILEDKPELT----PVAIQSGRLLARRLFA 364 (503)
T ss_pred cccCCccccChHHhcCCCceEEecceecCCcccc----hhhhhhchHHHHHHhc
Confidence 12234544444455678999999765544443 5688999988887743
No 367
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.37 E-value=0.0072 Score=60.53 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=46.9
Q ss_pred eEEecCEEEEccCCCCccccc--ccC-ceeee-------cCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHH
Q 017240 232 MIVPCRLATVASGAASGKLLE--YEE-WSYIP-------VGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYA 301 (375)
Q Consensus 232 ~~i~a~~vI~A~G~~s~~~~~--~~~-~~~~p-------~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a 301 (375)
.++.+|.||.|-|..+..... +.. ...++ ........-+++++.||...+-.- -|..++.+|...+
T Consensus 339 ~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~g----vI~t~~~dA~~ta 414 (491)
T PLN02852 339 EDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTG----IIGTNLTCAEETV 414 (491)
T ss_pred EEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCC----eeeecHhhHHHHH
Confidence 368999999999976422211 211 11222 111111234689999998763221 3567888999999
Q ss_pred HHHHHHHhcC
Q 017240 302 SAIAYILKHD 311 (375)
Q Consensus 302 ~~i~~~l~~~ 311 (375)
+.|.+.+..+
T Consensus 415 ~~i~~d~~~~ 424 (491)
T PLN02852 415 ASIAEDLEQG 424 (491)
T ss_pred HHHHHHHHcC
Confidence 9998887653
No 368
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.26 E-value=0.00022 Score=72.50 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~ 140 (375)
|+||||||.+|+.+|..|++.| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 6999999874
No 369
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00025 Score=72.13 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.++|+||||+|.+|.++|..|+..|++|+|+|...
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 46999999999999999999999999999999873
No 370
>PLN03000 amine oxidase
Probab=97.24 E-value=0.00044 Score=72.87 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~ 142 (375)
...+|+|||||++|+++|..|++.|++|+|+|+....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4589999999999999999999999999999987543
No 371
>PLN02785 Protein HOTHEAD
Probab=97.22 E-value=0.00034 Score=71.75 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..||+||||||.+|+.+|..|++ +.+|+|||++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 35999999999999999999999 68999999875
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.22 E-value=0.00097 Score=66.95 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..|+|||+|++|+++|..|+++|++|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999965
No 373
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.0043 Score=63.66 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEc-CCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
...+...|.+.+.+.||+++ ++.++++..+ ++.+++|.. .+| ..+.|+.||+|||++...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 56788999998988999999 9999999875 344555543 355 368999999999998754
No 374
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.19 E-value=0.0023 Score=62.37 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=65.8
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CcEEEECCCCCCCCCC-cCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 110 LVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNY-GVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~~~~~~-g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
++|||+|++|+++|..|.+.+ .+++++.......... +++......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGG------------------------------- 49 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcc-------------------------------
Confidence 589999999999999988854 5787776553222111 110000000
Q ss_pred eecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
......+....... .+.++++. +++|+.++.... .|.+.+| ++.+|.+|+|+|+.....
T Consensus 50 ~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~id~~~~---~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 50 IASLEDLRYPPRFN-RATGIDVRTGTEVTSIDPENK---VVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred cCCHHHhcccchhH-HhhCCEEeeCCEEEEecCCCC---EEEECCC-cccccEEEEcCCCcccCC
Confidence 00000111110112 35689999 999999987755 6778888 899999999999876554
No 375
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.17 E-value=0.015 Score=57.29 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc-eEEEEecCCeEEecCEEEEccC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASG 244 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~~g~~i~a~~vI~A~G 244 (375)
.+|-+.+-+.+.-.|..+. +..|.++..++++ ...|.. +|++++|+.||....
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dps 286 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDPS 286 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEGG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECCc
Confidence 4788888887777888888 9999999886543 444554 778999999996433
No 376
>PLN02976 amine oxidase
Probab=97.11 E-value=0.00062 Score=74.57 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
.+||+|||||++|+++|+.|++.|++|+|||+...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~ 727 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR 727 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence 47999999999999999999999999999998654
No 377
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.07 E-value=0.00061 Score=65.21 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcE--EEECCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNV--GLIGPDLPF 142 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V--~liE~~~~~ 142 (375)
..+|+|||||++||++|++|++++-+| +|+|+.+..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 479999999999999999999998765 558987643
No 378
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.06 E-value=0.0025 Score=62.90 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHHCCceEE-EEEEEEEEEcCCceEEEEec-CCeEEe--cCEEEEccCCCCc
Q 017240 200 RCVESGVSYL-SSKVESITESTSGHRLVACE-HDMIVP--CRLATVASGAASG 248 (375)
Q Consensus 200 ~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~-~g~~i~--a~~vI~A~G~~s~ 248 (375)
.+.+.|++++ +++|+.++.+++ .+.+... ++.++. +|.||+|||+.+.
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~-~v~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQ-TVVVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCC-EEEEEECCCCCEEecCCCEEEECCCCCCC
Confidence 3466899998 999999987655 4444433 235677 9999999998654
No 379
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.00086 Score=65.06 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFT 143 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~~~ 143 (375)
...|||||||.|||+||..|.+.|. +|+|+|.....+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 3589999999999999999997765 799999776443
No 380
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.62 E-value=0.0017 Score=64.67 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
-+|+|||+|.+|+-.|.+|++.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 579999999999999999999999999998753
No 381
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.023 Score=53.35 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=56.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCce
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
..||+|||||-+|..+|+.|+-.=..|+|+|=.+..
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 369999999999999999999877789999844211
Q ss_pred eecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCceEEEEec
Q 017240 187 RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACE 229 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~V~~~ 229 (375)
+-++.|.+++.. .+++|+ +..-++|.-+++.+.++.+.
T Consensus 390 -----kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~ 429 (520)
T COG3634 390 -----KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYR 429 (520)
T ss_pred -----hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEE
Confidence 235566777766 589999 88888887775545555554
No 382
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.59 E-value=0.032 Score=59.75 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHHCCceEE-EEEEEEEEEcCCc-eEEEEec------------------------------CCeEEecCEEEEccCCC
Q 017240 199 RRCVESGVSYL-SSKVESITESTSG-HRLVACE------------------------------HDMIVPCRLATVASGAA 246 (375)
Q Consensus 199 ~~~~~~gv~i~-~~~v~~i~~~~~~-~~~V~~~------------------------------~g~~i~a~~vI~A~G~~ 246 (375)
+.+.+.||++. ...-..+..++++ ...|++. ...++.||.||+|.|..
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 34556799988 7766666554322 2222221 11367888888888843
Q ss_pred CcccccccCceeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhcCC
Q 017240 247 SGKLLEYEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 312 (375)
Q Consensus 247 s~~~~~~~~~~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~~~ 312 (375)
..... ...++-.+||- ||.-...+..||.+|+..+..|.++|..+.
T Consensus 728 ~~~~~----------------~~~~~s~~~d~----~~~f~Gtvv~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 728 NNTQF----------------DEDKYSYFGDC----NPKYSGSVVKALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred Ccccc----------------cccccccccCC----CCccccHHHHHHHHHHhHHHHHHHHHhhCC
Confidence 21111 12333444443 444333889999999999999999998764
No 383
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.56 E-value=0.0076 Score=57.62 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=76.1
Q ss_pred CcccEEEECCCHHHHHHHHHHH--HCCCcEEEECCCCCCCCCC-----cCcH----HHHHhcCCchhhhhhcccceEEeC
Q 017240 106 GILDLVVIGCGPAGLALAAESA--KLGLNVGLIGPDLPFTNNY-----GVWE----DEFRDLGLEGCIEHVWRDTVVYID 174 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La--~~G~~V~liE~~~~~~~~~-----g~~~----~~l~~~g~~~~~~~~~~~~~~~~~ 174 (375)
.+...+|||+|.+..+++.... +.+.+|.+|-.++..+-.. .+|- .....+ ....|..
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~l-----rfkqwsG------ 245 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKL-----RFKQWSG------ 245 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhhe-----eecccCC------
Confidence 4577999999998888776665 3467899984333222100 0010 000000 0111211
Q ss_pred CCCCeeecCCceeecHHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCCccc
Q 017240 175 EDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (375)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s~~~ 250 (375)
....+.+.++--.+++.+|.+. .+-||-+. +-+|+.|...+. .|+++||.+|.+|..++|||..+..+
T Consensus 246 keRsiffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l 314 (659)
T KOG1346|consen 246 KERSIFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDEEDK---KVILNDGTTIGYDKCLIATGVRPKKL 314 (659)
T ss_pred ccceeEecCCcceeChhHCccc-----ccCceEEEeccceEEeecccC---eEEecCCcEeehhheeeecCcCcccc
Confidence 1111111222224666665543 34688888 899999988766 78899999999999999999887665
No 384
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.47 E-value=0.068 Score=52.84 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCc----eEEEEe-cCC--eEE---ecCEEEEccCCC
Q 017240 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSG----HRLVAC-EHD--MIV---PCRLATVASGAA 246 (375)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~----~~~V~~-~~g--~~i---~a~~vI~A~G~~ 246 (375)
..+..=|.+.+++.||+++ +++|++|+.+.++ ...+.+ .+| ++| .-|+|++..|+-
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 3566678888999999999 9999999876322 122222 344 222 368899988853
No 385
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.30 E-value=0.0036 Score=63.21 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCcEEEECCCC
Q 017240 105 NGILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDL 140 (375)
Q Consensus 105 ~~~~DVvIIGgG~aGl~aA~~La~~-G~~V~liE~~~ 140 (375)
...||.||||||.||+.+|..|++. .++|+|+|++.
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 3569999999999999999999987 68999999864
No 386
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.16 E-value=0.0072 Score=51.07 Aligned_cols=32 Identities=47% Similarity=0.513 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|+|||||..|.++|..|+++|++|.|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998874
No 387
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.08 E-value=0.026 Score=57.35 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
..+|+|||+|.+|.-.|.+|++...+|.+.-|...
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 35799999999999999999999999999877643
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.83 E-value=0.013 Score=50.78 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999864
No 389
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.019 Score=51.53 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=40.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC-------------CCCcCcHHHHHhcCCch
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-------------NNYGVWEDEFRDLGLEG 160 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~-------------~~~g~~~~~l~~~g~~~ 160 (375)
+++|||+|..|...|..|.+.|+.|++||++.... ...+.-.+.|.+.|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 69999999999999999999999999998875321 11233456777777654
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.42 E-value=0.016 Score=50.39 Aligned_cols=32 Identities=41% Similarity=0.428 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||.|..|+.+|..|++.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 69999999999999999999999999999773
No 391
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.019 Score=57.26 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|+|||.|++|+++|..|++.|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 48999999999999999999999999999764
No 392
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.11 Score=45.97 Aligned_cols=121 Identities=19% Similarity=0.142 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccceEEeCCCCCeeecCCcee
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (375)
.-.+|||||-+.+.-|..|.+.+-+|-||-+...+
T Consensus 158 k~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f--------------------------------------------- 192 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF--------------------------------------------- 192 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------------
Confidence 35899999999999999999999999999766322
Q ss_pred ecHHHHHHHHHHHHHH-CCceEE-EEEEEEEEEcCCc--eEEE---EecCCeEEecCEEEEccCCCCccc------cccc
Q 017240 188 VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSG--HRLV---ACEHDMIVPCRLATVASGAASGKL------LEYE 254 (375)
Q Consensus 188 v~~~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~--~~~V---~~~~g~~i~a~~vI~A~G~~s~~~------~~~~ 254 (375)
.-...+.+++.+ .+++++ ++.+.+..-+.+. ...+ .+.+...+..+-++-|-| +++.. .+++
T Consensus 193 ----RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG-H~Pat~~l~gqve~d 267 (322)
T KOG0404|consen 193 ----RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG-HSPATKFLKGQVELD 267 (322)
T ss_pred ----hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec-CCchhhHhcCceeec
Confidence 123344555554 578888 8877766544221 2222 222335789999999999 44332 2234
Q ss_pred CceeeecC-CCCCccCCCEEEEccC
Q 017240 255 EWSYIPVG-GSLPNTEQRNLAFGAA 278 (375)
Q Consensus 255 ~~~~~p~~-~~~~~~~~~v~liGda 278 (375)
+..|+-.. +.....-.+++..||-
T Consensus 268 ~~GYi~t~pgts~TsvpG~FAAGDV 292 (322)
T KOG0404|consen 268 EDGYIVTRPGTSLTSVPGVFAAGDV 292 (322)
T ss_pred cCceEEeccCcccccccceeecccc
Confidence 44454432 3333344578888884
No 393
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.28 E-value=0.025 Score=47.16 Aligned_cols=30 Identities=33% Similarity=0.560 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
|+|+|+|..|+..|..|++.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999876
No 394
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.96 E-value=0.036 Score=52.38 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
...|+|||+|..|...|..|++.|++|+++.++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 367999999999999999999999999999875
No 395
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.034 Score=51.90 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..+++.|++|+++|..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999875
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.87 E-value=0.043 Score=48.51 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|||||.+|..-+..|.+.|.+|+||+++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998763
No 397
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.82 E-value=0.035 Score=52.34 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999874
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.80 E-value=0.046 Score=46.16 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
...|+|||||..|..-|..|.+.|.+|+||.++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 357999999999999999999999999999644
No 399
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.042 Score=54.63 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999863
No 400
>PRK04148 hypothetical protein; Provisional
Probab=94.79 E-value=0.08 Score=43.24 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=51.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCcHHHHHhcCCchhhhhhcccc-eEEeCCCCCeeecCCce
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDT-VVYIDEDEPILIGRAYG 186 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (375)
..+++||.| .|...|..|++.|++|+.+|-++.. .+...+.+............ .++-+ ..--|.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a-------V~~a~~~~~~~v~dDlf~p~~~~y~~------a~liys 83 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA-------VEKAKKLGLNAFVDDLFNPNLEIYKN------AKLIYS 83 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH-------HHHHHHhCCeEEECcCCCCCHHHHhc------CCEEEE
Confidence 469999999 9999999999999999999976431 11112222111000000000 00000 000112
Q ss_pred eecHHHHHHHHHHHHHHCCceEE
Q 017240 187 RVSRHLLHEELLRRCVESGVSYL 209 (375)
Q Consensus 187 ~v~~~~l~~~L~~~~~~~gv~i~ 209 (375)
.-.+.++...+.+.+++.|++++
T Consensus 84 irpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCCCEE
Confidence 23467899999999999888865
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.68 E-value=0.023 Score=44.27 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
...|+|||||..|..-+..|.+.|.+|+||.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 357999999999999999999999999999876
No 402
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.40 E-value=0.17 Score=51.89 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe---cCC--eEEecCEEEEccCCCCcc
Q 017240 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (375)
Q Consensus 190 ~~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~---~~g--~~i~a~~vI~A~G~~s~~ 249 (375)
...+...|.+.+++.||+++ ++.++++..+++.+++|.. .+| ..+.|+.||+|||+++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 45788899999988999999 9999999876554555543 345 368999999999998643
No 403
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.33 E-value=0.074 Score=46.91 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..|+|||||-.|...|..|.+.|.+|+||++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57999999999999999999999999999865
No 404
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.17 E-value=0.063 Score=50.56 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 57999999999999999999999999999875
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.17 E-value=0.08 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|...|..|++.|. +++|+|.+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999999 699999873
No 406
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.14 E-value=0.046 Score=47.71 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..+|+|||+|.++.-+|..|++.|.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3689999999999999999999999999997764
No 407
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.12 E-value=0.065 Score=49.98 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999764
No 408
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.081 Score=50.10 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 409
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.04 E-value=0.07 Score=49.79 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999874
No 410
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.97 E-value=0.19 Score=48.34 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCceEE-EEEEEEEEEcCCceEEEEecC-----CeEEecCEEEEccCCCC
Q 017240 204 SGVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVASGAAS 247 (375)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~V~~~~-----g~~i~a~~vI~A~G~~s 247 (375)
..+.++ .++|+.++..+++.+.+.+.. ..++..|.||+|||-+-
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence 468888 999999999887545555432 26899999999999763
No 411
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.91 E-value=0.073 Score=49.90 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGP 138 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~ 138 (375)
+|+|||+|..|..+|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 412
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.83 E-value=0.059 Score=44.30 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
++|+|+|+.+.++|..++..|++|+|+|.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 68999999999999999999999999987654
No 413
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.76 E-value=0.084 Score=43.22 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 579999999999999999999998 699998764
No 414
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.74 E-value=0.33 Score=52.31 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=94.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCc-EEEEC--CCCC----CCCCCcCcHHHHH-hcCCchhhhhhcccceEEeCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLN-VGLIG--PDLP----FTNNYGVWEDEFR-DLGLEGCIEHVWRDTVVYIDEDE 177 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~-V~liE--~~~~----~~~~~g~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~ 177 (375)
...+|+|||||-.|.-|--.--++|.+ |.=+| +.++ ..+.|.-|+..+. ++|......++-.+..
T Consensus 1923 ~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr------- 1995 (2142)
T KOG0399|consen 1923 KGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPR------- 1995 (2142)
T ss_pred CCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcc-------
Confidence 457999999999999888888888864 55555 2222 2244444443322 1222222121111111
Q ss_pred CeeecCCceeecHHHHHHHHHHHH-HHC--CceEEEEEEEEEEEcCCceEEEEecCC--eEEecCEEEEccCCCCccccc
Q 017240 178 PILIGRAYGRVSRHLLHEELLRRC-VES--GVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGKLLE 252 (375)
Q Consensus 178 ~~~~~~~~~~v~~~~l~~~L~~~~-~~~--gv~i~~~~v~~i~~~~~~~~~V~~~~g--~~i~a~~vI~A~G~~s~~~~~ 252 (375)
.|..+ .++. ... +|+=+++.=++.+.++.+.|...-.++ +.+.||+||+|.|.-.+....
T Consensus 1996 ------~y~vl---------tk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~ 2060 (2142)
T KOG0399|consen 1996 ------TYSVL---------TKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSV 2060 (2142)
T ss_pred ------eeeee---------eeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhh
Confidence 01111 1111 111 122222222334445545666543333 578999999999965544311
Q ss_pred c-------cCc-eeeecCCCCCccCCCEEEEccCCCCCCCCChHHHHHHHhhHHHHHHHHHHHHhc
Q 017240 253 Y-------EEW-SYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 310 (375)
Q Consensus 253 ~-------~~~-~~~p~~~~~~~~~~~v~liGdaa~~~~p~~G~Gi~~al~~a~~~a~~i~~~l~~ 310 (375)
. +.. .+............+++..||.--+.... ..+++.++.+|..+.+...+
T Consensus 2061 ~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslv-----vwai~egrq~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2061 IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLV-----VWAIQEGRQAARQVDELMGG 2121 (2142)
T ss_pred hhhcCcccCccccccCCCccccccccceeecccccCCceEE-----EEEehhhhHHHHHHHHHhCC
Confidence 1 111 11112333445567899999976443333 67899999999999985544
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.086 Score=49.26 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999764
No 416
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.71 E-value=0.085 Score=49.37 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
.|+|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999875
No 417
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.67 E-value=0.089 Score=49.18 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999764
No 418
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.59 E-value=0.11 Score=41.08 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 110 VvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
|+|+|.|..|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999874
No 419
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.58 E-value=0.1 Score=44.57 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..|+|+|+|.+|..||..|...|.+|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 68999999999999999999999999999865
No 420
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.53 E-value=0.13 Score=42.19 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCc-EEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~ 139 (375)
...|+|||+|-+|-+++..|.+.|.+ |+|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 36899999999999999999999987 9999876
No 421
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.42 E-value=0.1 Score=48.44 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999998764
No 422
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.42 E-value=0.11 Score=50.40 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999763
No 423
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.34 E-value=0.1 Score=52.47 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
...|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998764
No 424
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.23 E-value=0.15 Score=46.97 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~ 141 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 579999999999999999999995 8999997753
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.18 E-value=0.14 Score=49.03 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999875
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.12 E-value=0.11 Score=50.76 Aligned_cols=33 Identities=27% Similarity=0.184 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
-.|+|+|+|+.|+.+|..+...|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 579999999999999999999999999998764
No 427
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.08 E-value=0.16 Score=44.69 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 679999999999999999999998 899999874
No 428
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.98 E-value=0.13 Score=48.52 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~ 140 (375)
+|.|||+|..|.++|+.|+..| .+|+++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 4799999764
No 429
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.97 E-value=0.087 Score=51.13 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEecCCeEEecCEEEEccCCCC
Q 017240 196 ELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (375)
Q Consensus 196 ~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~~~g~~i~a~~vI~A~G~~s 247 (375)
.+...+...|.+|+ +++|+.|..+++ .+.|.+.+|.++.||.||+|+....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIEREDG-GVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEESS-EEEEEETTSSEEEESEEEE-S-HHH
T ss_pred HHHHHHhhcCceeecCCcceecccccc-ccccccccceEEecceeeecCchhh
Confidence 33344444677999 999999999987 7889999998999999999988543
No 430
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.93 E-value=0.18 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~ 141 (375)
.|+|||+|-.|...|..|++.|. +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999997753
No 431
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.87 E-value=0.14 Score=48.72 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
+|.|||+|..|.+.|..|++.|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5899999999999999999999999999875
No 432
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.69 E-value=0.14 Score=48.80 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999875
No 433
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.64 E-value=0.18 Score=48.28 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 679999999999999999999999 899999864
No 434
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.61 E-value=0.22 Score=45.12 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~ 141 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 689999999999999999999997 6888887753
No 435
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.59 E-value=0.16 Score=48.84 Aligned_cols=32 Identities=38% Similarity=0.438 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.|||.|..||+.|..|++.|++|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999998764
No 436
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.55 E-value=0.18 Score=47.53 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999998764
No 437
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.54 E-value=0.2 Score=43.06 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCc-EEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~ 140 (375)
.|+|||+|..|...|..|++.|.. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 389999999999999999999984 99998774
No 438
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.45 E-value=0.19 Score=47.71 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999998863
No 439
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.39 E-value=0.21 Score=45.46 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
...|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3689999999999999999999997 799998764
No 440
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.34 E-value=0.11 Score=48.11 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.-+|+|||||.+|.-+|.-+...|.+|+|+|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999774
No 441
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=0.17 Score=48.64 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=37.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG 147 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g 147 (375)
..+||||||-|..=..+|.+.++.|.+|+=+|++.-.+.+|.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccc
Confidence 469999999999999999999999999999999987776664
No 442
>PRK08328 hypothetical protein; Provisional
Probab=92.22 E-value=0.23 Score=44.76 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 688998764
No 443
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.19 E-value=0.24 Score=44.55 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|...|..|++.|. +++|+|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 579999999999999999999998 788998764
No 444
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.25 Score=46.88 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 106 ~~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
+.|||+|+|-|..=+.++..|+..|.+|+.||+++..+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 36999999999999999999999999999999987554
No 445
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.14 E-value=0.2 Score=46.82 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999764
No 446
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.12 E-value=0.43 Score=48.54 Aligned_cols=32 Identities=28% Similarity=0.221 Sum_probs=28.4
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGC-GPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGg-G~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
-|+|.|| |..|..++.+|++.|++|+++.++.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5889997 8999999999999999999987653
No 447
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.11 E-value=0.18 Score=49.68 Aligned_cols=33 Identities=30% Similarity=0.198 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||.|..|+.+|..|++.|++|+++|.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 469999999999999999999999999998764
No 448
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.10 E-value=0.24 Score=46.65 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|.++|..|++.|++|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 579999999999999999999999999998764
No 449
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.07 E-value=0.17 Score=49.86 Aligned_cols=32 Identities=44% Similarity=0.505 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.|||.|..|+.+|..|++.|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 59999999999999999999999999998764
No 450
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.97 E-value=0.23 Score=46.24 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~ 139 (375)
..|+|||+|.+|.++|..|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999998 79999886
No 451
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.94 E-value=0.25 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCC-----------CcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLG-----------LNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G-----------~~V~liE~~~ 140 (375)
...|+|||+|..|..++..|++.| .+++|+|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 478999999999999999999974 3899999774
No 452
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.93 E-value=0.27 Score=43.65 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-EEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|.. ++|+|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5799999999999999999999985 99999774
No 453
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.83 E-value=0.25 Score=44.99 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~ 141 (375)
...++|+|+|+.+..+|..+...|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 36899999999999999999999999999987654
No 454
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=91.82 E-value=0.62 Score=46.92 Aligned_cols=35 Identities=43% Similarity=0.466 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~~~ 142 (375)
.||||||||++||++|..|++.|++|+|+|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999998643
No 455
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.81 E-value=0.22 Score=46.88 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|.|||+|..|...|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999887 899999743
No 456
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.72 E-value=0.23 Score=46.92 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999998763
No 457
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.58 E-value=0.3 Score=40.40 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=28.3
Q ss_pred cEEEECC-CHHHHHHHHHHHHCCC--cEEEECCC
Q 017240 109 DLVVIGC-GPAGLALAAESAKLGL--NVGLIGPD 139 (375)
Q Consensus 109 DVvIIGg-G~aGl~aA~~La~~G~--~V~liE~~ 139 (375)
+|+|||+ |..|.++|+.|...++ ++.|+|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 6999999 9999999999999875 69999876
No 458
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.46 E-value=0.23 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999998763
No 459
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.41 E-value=0.31 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=29.7
Q ss_pred cccEEEECCCH-HHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGP-AGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~-aGl~aA~~La~~G~~V~liE~~ 139 (375)
...|+|||+|- +|..+|..|.+.|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999999999875
No 460
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.41 E-value=0.35 Score=45.76 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC--cEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~--~V~liE~~~ 140 (375)
..+|+|||+|..|.++|+.|+..|+ ++.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4689999999999999999999998 799999754
No 461
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.33 E-value=0.26 Score=47.33 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=26.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEECCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPD 139 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~ 139 (375)
.|+|+|+||.||.++..+...|. +|+++|..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 59999999999999888888896 56666765
No 462
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.32 E-value=0.34 Score=43.62 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||.|..|..+|..|++.|. +++|+|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 799998774
No 463
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.08 E-value=0.3 Score=43.59 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
...|+|||||..++-=+..|.+.|.+|+||-+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 457999999999999999999999999999765
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.03 E-value=0.29 Score=47.82 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
...|+|||.|+.|..+|..|...|.+|+++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3579999999999999999999999999998764
No 465
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.02 E-value=0.3 Score=49.08 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
...|+|+|+|++|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999998764
No 466
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.98 E-value=0.29 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..+++.|++|+++|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999874
No 467
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.91 E-value=0.37 Score=47.87 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|+|.|.+|+++|..|++.|++|+++|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999998654
No 468
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=90.89 E-value=0.54 Score=45.51 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCC
Q 017240 117 PAGLALAAESAKLGLNVGLIGPDLPFT 143 (375)
Q Consensus 117 ~aGl~aA~~La~~G~~V~liE~~~~~~ 143 (375)
+|||+||++|++.|++|+|+|+....+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 589999999999999999999886543
No 469
>PRK08223 hypothetical protein; Validated
Probab=90.89 E-value=0.36 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 579999999999999999999998 688888764
No 470
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.86 E-value=0.36 Score=47.90 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|+|+|.+|+++|..|++.|++|++.|...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999998654
No 471
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=90.75 E-value=0.85 Score=45.41 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=27.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEEC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIG 137 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE 137 (375)
.+|+|||+|-.++=+|....+.|. +|+.++
T Consensus 263 k~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 263 KRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293 (457)
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence 689999999999999999999998 677775
No 472
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.70 E-value=0.41 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
-.|.|||+|..|...|..|++.|++|+++|+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 473
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.64 E-value=0.35 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEECCCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLP 141 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~~ 141 (375)
.|+|||+|.+|.++|+.|+..| .+++|+|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 47999998653
No 474
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.61 E-value=0.38 Score=42.23 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|...|..|+..|. +++|+|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 679999999999999999999998 599998764
No 475
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.54 E-value=0.4 Score=43.07 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc---EEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~---V~liE~~~ 140 (375)
..|+|+|+|-+|..+|..|.+.|.+ +.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4799999999999999999999985 99999873
No 476
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.49 E-value=0.3 Score=49.29 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 477
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.44 E-value=0.41 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|..|...|..|++.|. +++|+|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 679999999999999999999998 499998764
No 478
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.27 E-value=0.51 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..|+|+|.|-.|..+|..|.+.|++|+++|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56999999999999999999999999999866
No 479
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.23 E-value=0.42 Score=44.97 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~ 141 (375)
.+|+|||+|..|...|..++..|+ +|.|+|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 8999997543
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.17 E-value=0.35 Score=51.13 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999774
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.15 E-value=0.37 Score=48.18 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G--~~V~liE~~~ 140 (375)
++|+|||.|..|+.+|..|++.| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 46999999999999999999985 7899998654
No 482
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.15 E-value=0.4 Score=48.35 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..|+|+|.|++|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 483
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.13 E-value=0.42 Score=47.02 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 469999999999999999999999999999764
No 484
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=90.10 E-value=0.86 Score=44.39 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCceEE-EEEEEEEEEcCCceEEEEe-cCCeEEecCEEEEccCCC
Q 017240 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-EHDMIVPCRLATVASGAA 246 (375)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~V~~-~~g~~i~a~~vI~A~G~~ 246 (375)
.+.+.|.+.+++.|++|+ +++|++|..++++ +.+.. .+|+++.||.||+|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCCHH
Confidence 344557778878899999 9999999988763 33332 466789999999987643
No 485
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.08 E-value=0.41 Score=42.66 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.9
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIG-CGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIG-gG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|.||| +|..|.++|..|++.|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999997753
No 486
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.07 E-value=0.48 Score=44.93 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~~ 141 (375)
..|+|||+|..|..+|+.++..|+ +++|+|.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 579999999999999999999996 8999987654
No 487
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.03 E-value=0.44 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=28.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.+|.|||-|-.|...|..|.+.|++|.++++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 369999999999999999999999999999764
No 488
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.01 E-value=0.41 Score=44.86 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
...|+|||.|.+|..+|..|...|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999998873
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.00 E-value=0.4 Score=47.64 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
+|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999998754
No 490
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.96 E-value=0.48 Score=42.77 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
.|+|||+|..|..++..|+..|. +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 38999999999999999999998 688988764
No 491
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.92 E-value=0.38 Score=50.79 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
...|.|||+|..|...|..++..|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3479999999999999999999999999999874
No 492
>PRK06153 hypothetical protein; Provisional
Probab=89.91 E-value=0.39 Score=46.34 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
..|+|||+|-.|..++..|++.|. +++|||.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999998 799999774
No 493
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.86 E-value=0.56 Score=40.85 Aligned_cols=32 Identities=41% Similarity=0.538 Sum_probs=29.4
Q ss_pred ccEEEECC-CHHHHHHHHHHHHCCCcEEEECCC
Q 017240 108 LDLVVIGC-GPAGLALAAESAKLGLNVGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGg-G~aGl~aA~~La~~G~~V~liE~~ 139 (375)
..++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999997 999999999999999999999865
No 494
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.82 E-value=0.47 Score=44.29 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCc-EEEECCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPD 139 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~-V~liE~~ 139 (375)
..++|+|+|-+|.++|..|++.|.+ |+|+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4699999999999999999999997 9999876
No 495
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.70 E-value=0.42 Score=49.02 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
-+++|+|+|..|..+|..|.+.|++|++||+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 579999999999999999999999999999874
No 496
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.70 E-value=0.42 Score=46.65 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
.|.|||.|..|+.+|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 58999999999999988885 99999999764
No 497
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.64 E-value=0.46 Score=47.42 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G~~V~liE~~~ 140 (375)
..|+|+|.|.+|+++|..|.+.|++|++.|...
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 369999999999999999999999999999764
No 498
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.58 E-value=0.48 Score=45.85 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHCC-CcEEEECCCC
Q 017240 108 LDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (375)
Q Consensus 108 ~DVvIIGgG~aGl~aA~~La~~G-~~V~liE~~~ 140 (375)
.+|+|||+|-.|..+|..|++.| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999873
No 499
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.43 E-value=0.58 Score=43.61 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEECCCC
Q 017240 109 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (375)
Q Consensus 109 DVvIIGgG~aGl~aA~~La~~G~-~V~liE~~~ 140 (375)
.|+|||+|..|..++..|+..|. +++|+|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 48999999999999999999998 688998764
No 500
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.42 E-value=0.6 Score=44.13 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHCCC--cEEEECCCC
Q 017240 107 ILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDL 140 (375)
Q Consensus 107 ~~DVvIIGgG~aGl~aA~~La~~G~--~V~liE~~~ 140 (375)
...|+|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3589999999999999999999886 689998754
Done!