BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017241
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 320 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363
+C +C+ R D PC H FC CI +W + CP+CR +T
Sbjct: 17 ECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPI 362
C +C N +D PCGH+ C +C+ W + CP CR I
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 362
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPI 362
C +C N +D PCGH+ C +C+ W + CP CR I
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 320 KCTLCLS---NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
KCT+CLS +D PC H+F C+ +W +CP+CR I
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 66 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 321 CTLCLSN---RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
C +CL + R + PC H F C+++W + CPLC P+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 317 GVSKCTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68
Query: 370 LY 371
+Y
Sbjct: 69 IY 70
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 317 GVSKCTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP---ECPLCRAPITHSSL 367
C +CL Q P CGH FC CI + +CPLC+ + +++
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 321 CTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371
C +C+ N + +T CGHVFC C+ + CP CR I H +Y
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIM------EWCNEKPECPLCRAPITHSSL 367
C +CL ++P + C H FC CI + K CP+CR P +L
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP---ECPLC 358
C +CL Q P CGH FC CI + +CPLC
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 307 TSTSESQAAPG--VSKCTLCLSNRQDPTATPCGHVFCWNCI--MEWCNEKPECPLCRAPI 362
+S S AP V +C +CL P + PC HVFC+ C+ W ++ C LCR I
Sbjct: 2 SSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEI 59
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 357
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 35.0 bits (79), Expect = 0.069, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 320 KCTLCLSNRQDPTATP----CGHVFCWNCIMEWCNEKPECPLCR 359
+C +CL+ +D CGH F C+ W CPLCR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 34.7 bits (78), Expect = 0.079, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 357
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 8 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAP 361
+C +C Q+P T C H FC +C +E P C +C P
Sbjct: 17 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQP 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 317 GVSKCTLCLS-------NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 317 GVSKCTLCLS-------NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 34.7 bits (78), Expect = 0.086, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAP 361
C +C DP T C H+FC CI+ CP CR P
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYP 67
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.7 bits (78), Expect = 0.089, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 357
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 27 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 308 STSESQAAPGVS---------KCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEKPECPL 357
S +ES+ PG++ +C +C P C H +C CI ++ + K +CP
Sbjct: 3 SLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPT 62
Query: 358 CRAPITHSSL 367
C +T L
Sbjct: 63 CCVTVTEPDL 72
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 318 VSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLV 368
V +C +C +D P C + C++CI W E + +CP CRAP+ LV
Sbjct: 22 VFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74
>pdb|3BDR|A Chain A, Crystal Structure Of Fatty Acid-Binding Protein-Like Ycf58
From Thermosynecoccus Elongatus. Northeast Structural
Genomics Consortium Target Ter13
Length = 190
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 323 LCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
LC DP CG W+ EW NEK E PI
Sbjct: 54 LCQQYDXDPAWAVCGARVSWDGTXEWDNEKHEGSTVLVPI 93
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 335 PCGHVFCWNCIMEWCNEKPECPLCRAPIT 363
PC H+F +CI+ W + CP+CR +T
Sbjct: 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK--------PECPLCR 359
C +CL P + CGH FC C+ N K CP+CR
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLT--ANHKKSMLDKGESSCPVCR 66
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 299 KGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLC 358
+G W + + S+CT L R+ C H+FC NC+ + CP+C
Sbjct: 6 RGAWAHSRAALDRLEKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIGTG--CPVC 61
Query: 359 RAP 361
P
Sbjct: 62 YTP 64
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEW 348
+ C++CL ++P CGH FC CI W
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRW 45
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
C +VVG +R PP R+ + + Y+ P + E+ +A S +R+
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65
Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
+ + + + ++ A R+ + R K++LN L + V+ +WP V V E
Sbjct: 66 LTPNYNPDIIFKDEKNTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123
Query: 200 ANLMFFYFEGLYYHIS 215
+ ++EG I+
Sbjct: 124 HSEESLHYEGRAVDIT 139
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 31.2 bits (69), Expect = 0.98, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 321 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 358
C LC D T C H FC CI+ + CP+C
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIME 347
+C +CL ++ TPCGH FC CI++
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIK 47
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
C +VVG +R PP R+ + + Y+ P + E+ +A S +R+
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65
Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
+ + + + ++ A R+ + R K++LN L + V+ +WP V V E
Sbjct: 66 LTPNYNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123
Query: 200 ANLMFFYFEGLYYHIS 215
+ ++EG I+
Sbjct: 124 HSEESLHYEGRAVDIT 139
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 321 CTLCL----SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLC 358
C +CL ++R PCGH+ C E E CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 321 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 358
C LC D T C H FC CI+ + CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
C +VVG +R PP R+ + + Y+ P + E+ +A S +R+
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65
Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
+ + + + ++ A R+ + R K++LN L + V+ +WP V V E
Sbjct: 66 LTPNYNPDIIFKDEENTGAERLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123
Query: 200 ANLMFFYFEGLYYHIS 215
+ ++EG I+
Sbjct: 124 HSEESLHYEGRAVDIT 139
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 314 AAPGVSKCTLCL----SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAP 361
+ G S C +CL ++R PCGH+ C E E CPLC P
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 321 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 358
C LC D T C H FC CI+ + CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 321 CTLCLSN---RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 360
C +C+ + RQ PC H F C+ +W CP+CRA
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 321 CTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCR 359
C +C S T PC H F C+ W + CP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
C +CL PCGH+ C C CP+CRAP+
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPV 53
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 53 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 35 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 62 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 43 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIME-WCNEKPECPLCRAPI 362
KC C P T CGH FC +C+ + P+C C+ I
Sbjct: 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 335 PCGHVFCWNC-IMEWCNEKPECPLCRAPI 362
PC HVFC++C I+ CP C P+
Sbjct: 19 PCKHVFCYDCAILHEKKGDKMCPGCSDPV 47
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
C +VVG +R PP R+ + + Y+ P + E+ +A S +R+
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65
Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMV 186
+ + + + ++ A R+ + R K++LN L + V+ +WP V
Sbjct: 66 LTPNYNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGV 110
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 321 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 357
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 45 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 321 CTLCLSNRQDPTATPCGH-VFCWNCIMEWCNEKPECPLCRAPI 362
C +C+ PCGH V C +C +CP+CR+ I
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDC----APSLRKCPICRSTI 65
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPITH 364
C +C + T PCGH C E C + + CP+CR+ + H
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCC----ESCAAQLQSCPVCRSRVEH 61
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 84 QVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSS 143
+VVG +R PP R+ + + Y+ P + E+ +A S +R+ +
Sbjct: 8 RVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKELTPN 60
Query: 144 RDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLM 203
+ + + ++ A R+ + R K++LN L + V+ +WP V V E +
Sbjct: 61 YNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEE 118
Query: 204 FFYFEGLYYHIS 215
++EG I+
Sbjct: 119 SLHYEGRAVDIT 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,448,177
Number of Sequences: 62578
Number of extensions: 397939
Number of successful extensions: 933
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 70
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)