BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017241
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/373 (71%), Positives = 294/373 (78%), Gaps = 13/373 (3%)
Query: 4 GETRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
G RRFP AAQPEIMRAAEKD+QYASFI++ACRDAFR LFGTR+A+AYQ E KL+GQMLY
Sbjct: 21 GGIRRFPLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLY 80
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRG 123
YVLTTGSGQQTLGEEYCDI QV GP L PTPARRALFI+YQTAVPYIAERIS+R A++
Sbjct: 81 YVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQTAVPYIAERISTRAATQA 140
Query: 124 IALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRV-YSAVSRLKEKLNGLRLYVIRR 182
+ ES DEF G S S I+ PSSS S VSRL ++L I+R
Sbjct: 141 VTFDES--DEF-----FGDSHIHSPRMIDLPSSSQVETSTSVVSRLNDRLMRSWHRAIQR 193
Query: 183 WPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVF 242
WP+VLP+ RE LQLVLRANLM FYFEG YYHISKR +G+RYVFIGK NQRPRYQILGVF
Sbjct: 194 WPVVLPVAREVLQLVLRANLMLFYFEGFYYHISKRASGVRYVFIGKQLNQRPRYQILGVF 253
Query: 243 LLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGW 302
LLIQLCI+AAEGLRRSNLSSI SS+ S+G Q S GRGLPVLNEEG+LI SE++KG W
Sbjct: 254 LLIQLCILAAEGLRRSNLSSITSSIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNW 313
Query: 303 VLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
STS+S + V KCTLCLS RQ PTATPCGHVFCW+CIMEWCNEK ECPLCR P
Sbjct: 314 -----STSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTPN 368
Query: 363 THSSLVCLYHSDF 375
THSSLVCLYHSDF
Sbjct: 369 THSSLVCLYHSDF 381
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 168/365 (46%), Gaps = 50/365 (13%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
QTLGEEY I +V Q P+ RR + + +PY+ +++ + E Q+
Sbjct: 66 YQTLGEEYVSIVRVDPSQTRVPSWLRRGVLVTLHAVLPYLLDKVLLPLEQ------ELQA 119
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
D + GS + V V R L + + R VL R
Sbjct: 120 DPDSGRPSQGS--------LVPGGRGCSGVRRWVRRHTATLTEQQRRALLRAAFVL---R 168
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFLLIQL 247
+ L + + ++ +FY G++YH++KR GI Y+ + G+ R Y++LGV L+ L
Sbjct: 169 QGLACLQQLHVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVVSLLHL 228
Query: 248 CIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDST 307
+ + GLR GF+Q R +E L S + G
Sbjct: 229 --VLSVGLR--------------LYGFRQRQRAR------KEWRLHRGLSHRRG------ 260
Query: 308 STSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367
+ E +A CTLCL R+ PTATPCGH+FCW CI WC+ K ECPLCR L
Sbjct: 261 -SLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKL 319
Query: 368 VCLYH 372
+ L H
Sbjct: 320 IYLRH 324
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 172/367 (46%), Gaps = 54/367 (14%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLP-PTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQ 130
QTLGEEY I QV P R+ P+ RR + + +PY+ ++ + E Q
Sbjct: 66 YQTLGEEYVSIIQV-DPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQ------ELQ 118
Query: 131 SDEFDRYNAAGSSRDQSLETIESPSSSAPR-VYSAVSRLKEKLNGLRLYVIRRWPMVLPI 189
+D +G SL S A R + + L E+ L + +
Sbjct: 119 ADP-----DSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVF-------V 166
Query: 190 VREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFLLI 245
+R+ L + R ++ +FY G++YH++KR GI Y+ + G+ R Y++LGV L+
Sbjct: 167 LRQGLACLQRLHVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVISLL 226
Query: 246 QLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLD 305
L + S+ ++ GF+Q R +E L S +
Sbjct: 227 HLVL------------SMGLQLY----GFRQRQRAR------KEWRLHRGLSHR------ 258
Query: 306 STSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365
++ E +A CTLCL R+ PTATPCGH+FCW CI WC+ K ECPLCR
Sbjct: 259 -RASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQ 317
Query: 366 SLVCLYH 372
L+ L H
Sbjct: 318 KLIYLRH 324
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 170/367 (46%), Gaps = 54/367 (14%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A PE++RAA+KDE Y + A +A L G + + ++ E +L+ + Y+ LTT +G
Sbjct: 4 AGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAG 63
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER----ISSRVASRGIALA 127
QTLGEEY I QV Q+ P+ RRA + +PY+ ++ + + + G A
Sbjct: 64 YQTLGEEYVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDKALLPLEQELQADGDAPR 123
Query: 128 ESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVL 187
SQ G SR + + + A + +++ L+ V
Sbjct: 124 ASQGSLLP----GGRSRSGARRWVR---------HHAATLTEQQRKALQRAVF------- 163
Query: 188 PIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGK--PTNQRPRYQILGVFLLI 245
I+R+ + R ++ +FY G +YH++KR AGI Y+ + +Q+ R + L+
Sbjct: 164 -ILRQGFACLHRLHVAWFYIHGTFYHLAKRLAGITYLRTRRLPGEDQKARTSYGLLGLIS 222
Query: 246 QLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLD 305
L ++ + GLR + F+Q R +E L + S +
Sbjct: 223 LLHLVLSMGLRLYS--------------FRQKQRAR------KEWRLHRNLSHR------ 256
Query: 306 STSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365
S+ E +A CTLCL R+ TATPCGH+FCW CI EWCN K ECPLCR
Sbjct: 257 -RSSLEDRAVCRTPLCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECPLCREKFPPQ 315
Query: 366 SLVCLYH 372
LV L H
Sbjct: 316 KLVYLRH 322
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 161/368 (43%), Gaps = 82/368 (22%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A QP+I+R+++KDE Y D C + ++ G R + QSE+KL+ +YY+LTT G
Sbjct: 81 ADQPDILRSSQKDEYYKKLFEDQCFEMLTRITGPRFIMNRQSESKLLANTIYYLLTTMIG 140
Query: 72 QQTLGEEYCDITQVVGPQ-RLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQ 130
QTLGEEYC++ ++ +P P R L+ + A PY+ ++
Sbjct: 141 SQTLGEEYCNLRKIKDKTFSIPSIPDRIKLYFFHLLA-PYLIKK---------------- 183
Query: 131 SDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIV 190
S P+++ +LY+++ I
Sbjct: 184 --------------------------SLPKLFQRHP---------KLYILKE------IF 202
Query: 191 REFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCII 250
+F +L +L FYF G Y+ SKR + IRY+F K +RP+Y I
Sbjct: 203 PKFERL----HLALFYFNGSYFEFSKRLSDIRYIFNRKIDQKRPKYD------------I 246
Query: 251 AAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDST--- 307
+ L S + S +Q G EE + ++ K V DS
Sbjct: 247 LGLLIIIQILLSTFMYLKENSFFLKQQQKDGGCNGDGEEDNQDLNKDIKIEQV-DSVINN 305
Query: 308 ---STSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364
+ +Q KCTLCL R TAT CGH+FCW+CI EWCN K +CP+CR PI+
Sbjct: 306 NNQDQNNNQEEEEEQKCTLCLEVRTHTTATICGHLFCWHCITEWCNNKEQCPVCRCPISI 365
Query: 365 SSLVCLYH 372
+ V LY+
Sbjct: 366 RTCVPLYN 373
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 159/378 (42%), Gaps = 98/378 (25%)
Query: 8 RFPPAAQPEIMRAAEKDEQYASF----IYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
RFP A P I++A +KDEQ + + C+ QLF +Y E + ++LY
Sbjct: 19 RFPFADAPSIVQAHQKDEQIQGLLIMKVTELCKLIKSQLFVN----SYPKELSIFAKLLY 74
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTA---VPYIAERISSRVA 120
+ TTG +TLGEEY D+T R A R IV+ A PY ++ ++
Sbjct: 75 LLFTTGRRGRTLGEEYVDLTYT---NRKGTRLAGRLKMIVFAFAYPLCPYFITKLYKKIM 131
Query: 121 SRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVI 180
++++ +E ES
Sbjct: 132 K--------------------NNKESKIEDTES--------------------------- 144
Query: 181 RRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRP-- 234
V + L +L ++ FYF+G +Y ISKR G+RYVF N R
Sbjct: 145 -----VAAFCKGLLDFILDVHMTLFYFKGAFYSISKRIFGMRYVFKHILSKNEANFREEG 199
Query: 235 --RYQILGVFLLIQLCIIAAEGLRRSNLSS-------IASSVHHTSLGFQQASTGRGLPV 285
+Y++LG LL Q ++ + S L S S+ +S+G Q+ S +
Sbjct: 200 SQKYKVLGYILLAQ-NVMKWYPVLTSTLGSWIYGRKRTNDSITRSSVGLQERSEHESI-- 256
Query: 286 LNEEGSLIPSESDKGGWVLDSTSTSESQAAPGV----SKCTLCLSNRQDPTATPCGHVFC 341
EG IP ES L + S+ P + KC LCL N DP+ PCGH+FC
Sbjct: 257 ---EG--IPKESQ-----LTHINLSDKNQLPFIPEASRKCILCLMNMSDPSCAPCGHLFC 306
Query: 342 WNCIMEWCNEKPECPLCR 359
W+C+M WC E+PECPLCR
Sbjct: 307 WSCLMSWCKERPECPLCR 324
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 146/362 (40%), Gaps = 82/362 (22%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + S +++ D + + G+ Y E + + LY LTT G
Sbjct: 8 ANAPAIVRANQKDSYFESRLHNQLLDVVKAIKGSHFVHKYPEELRTLATALYLCLTTLVG 67
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
+TLGEEY D+ V R P A R F+V PY
Sbjct: 68 SKTLGEEYVDLVYVSRDGRKIPKFASRFGFVVAYVLFPYAVR------------------ 109
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
Q L+ +++ S ++ S VS + V
Sbjct: 110 --------------QLLQKLKAQQSRLAQLVSGVSYMN--------------------VM 135
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGK--PTNQRPR--YQILGVFLLIQL 247
+ L L +L FYF G YY +KR G+RY F + QR R Y++LG+ ++ Q
Sbjct: 136 DLLNL----HLALFYFTGKYYQFAKRLFGLRYAFGYRVDKNQQRARGNYELLGLLIIFQT 191
Query: 248 CIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDST 307
LR+ L +V + G LI D+ V+D
Sbjct: 192 VFKNVANLRK--LWGATKTVQ-------------------DSGDLIYRFRDQTSDVIDLA 230
Query: 308 STSESQAAPGVSK-CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366
P S+ C LCLS +DP+ CGHVFCW C+++W E+ ECPLCRA + S
Sbjct: 231 DPKVLPYLPEASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQ 290
Query: 367 LV 368
L+
Sbjct: 291 LL 292
>sp|Q92265|PEX10_PICPA Peroxisome biogenesis factor 10 OS=Komagataella pastoris GN=PEX10
PE=1 SV=1
Length = 419
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 47/346 (13%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + + + D ++ + G R + E + + LY LTT G
Sbjct: 26 ANAPAIVRANQKDSYFETVLRDKLQNVIQIFKGQRFTHTHPEEIGVAAKALYLSLTTLLG 85
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
+TLGEEY D+ V + P RA FI +PY R+ R+ S E
Sbjct: 86 TKTLGEEYVDLIYVSRDGKRIPRYLARAGFIFAYAILPYFLTRLFRRLKSSSTPKDEVTE 145
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
++ ++ E P S R+++ L+ +
Sbjct: 146 EKINK---------------ELPISL---------RIEKYLSNMS-------------YS 168
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRP---RYQILGVFLLIQLC 248
+ L ++ ++ FYF G +Y+ISKR +RY F K +R Y++LG +++QL
Sbjct: 169 KVLDTIMNLHIAVFYFSGQFYNISKRFFSMRYAFGHKINKERTPNGNYELLGGLIVLQLV 228
Query: 249 IIAAEGLRRSNLSSIASSVHHTS-LGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDST 307
+ + G + S + H S L G+P E+ + ++D +
Sbjct: 229 MKSLGGFKGLIGSFTGNDEHDESNLRANNKDIMYGIP-----SEEEQEEAKQQLGIIDLS 283
Query: 308 STSESQAAPGVSK-CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK 352
+ P S+ C LCLS +PTA CGH FCW+CI++WC E+
Sbjct: 284 DPGQLPYIPESSRQCMLCLSYMTNPTAANCGHCFCWSCIIDWCKER 329
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370
G KC+LC+ P AT CGH+FCW+CI W ++K ECPLCRA + S ++ L
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKIILL 305
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 296 ESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE- 354
S+ GG S T ES +C +CL +D + CGH+FCW C+ +W +P
Sbjct: 14 NSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
Query: 355 --CPLCRAPITHSSLVCLY 371
CP+C+A I+ ++ LY
Sbjct: 74 QVCPVCKAGISRDKVIPLY 92
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 11/63 (17%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-----------ECPLCRAPITHSSLV 368
C +CL + Q+P T CGH+FCW CI +W + + +CP+C++ ++HS+LV
Sbjct: 47 DCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLV 106
Query: 369 CLY 371
LY
Sbjct: 107 PLY 109
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----------EKPECPLCRAPITHSS 366
G C +CL DP T CGH+FCW CI +W + + CP+C++ IT +S
Sbjct: 40 GCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITS 99
Query: 367 LVCLY 371
LV LY
Sbjct: 100 LVPLY 104
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 305 DSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC--------------- 349
D T+ +S G C +CL +DP T CGH+FCW CI +W
Sbjct: 8 DDTTLVDSG---GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDH 64
Query: 350 -NEKPECPLCRAPITHSSLVCLY 371
E P+CP+C++ ++ ++LV +Y
Sbjct: 65 KREPPKCPVCKSDVSEATLVPIY 87
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 311 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 367
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 368 VCLY 371
+ LY
Sbjct: 89 IPLY 92
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 311 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 367
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 368 VCLY 371
+ LY
Sbjct: 89 IPLY 92
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 311 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 367
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 368 VCLY 371
+ LY
Sbjct: 89 IPLY 92
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 295 SESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP- 353
+E + GG E A +C +CL ++ + CGH++CW C+ +W +P
Sbjct: 4 AEEEDGG---PEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPD 60
Query: 354 --ECPLCRAPITHSSLVCLY 371
ECP+C+A I+ +V LY
Sbjct: 61 RQECPVCKAGISREKVVPLY 80
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 295 SESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP- 353
+E + GG E A +C +CL ++ + CGH++CW C+ +W +P
Sbjct: 4 AEEEDGG---PEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPD 60
Query: 354 --ECPLCRAPITHSSLVCLY 371
ECP+C+A I+ +V LY
Sbjct: 61 RQECPVCKAGISREKVVPLY 80
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC-----------NEKPECPLCRAPITHS 365
G C +CL +P T CGH++CW CI +W ++P+CP+C+A ++
Sbjct: 37 GGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEK 96
Query: 366 SLVCLY 371
+L+ LY
Sbjct: 97 TLIPLY 102
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 257 RSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAP 316
+ L SI + L Q P LN G IP K L + SE++ +
Sbjct: 384 KKALESILPTAPSAGLKRQFPDDVEDAPDLNAPGK-IP----KKDLSLQRSPNSETEESQ 438
Query: 317 GVS------KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364
G+S +C LC+ +P TPCGH FC C+ + P CPLC+ ++
Sbjct: 439 GLSLDVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSE 492
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 295 SESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP- 353
+E + GG E A +C +CL ++ + CGH++CW C+ +W +P
Sbjct: 4 AEEEDGG---PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE 60
Query: 354 --ECPLCRAPITHSSLVCLY 371
ECP+C+A I+ +V LY
Sbjct: 61 RQECPVCKAGISREKVVPLY 80
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 371
+C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ ++ LY
Sbjct: 40 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 371
+C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ ++ LY
Sbjct: 40 ECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 371
+C +CL +D + CGH+FCW C+ +W + +P CP+C++ I + +V +Y
Sbjct: 25 ECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIY 79
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPL-CRAPITHSSL 367
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65
>sp|Q69ZS0|PZRN3_MOUSE E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1
SV=3
Length = 1063
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPL-CRAPITHSSL 367
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECP-LCRAPITHSSL 367
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKEL 65
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 52.0 bits (123), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 319 SKCTLCLSNRQDPTA------TPCGHVFCWNCIMEWCN------EKPECPLCRAPITHSS 366
S+C++C Q P TPCGH +C NC++E + +KP CP CR PI+
Sbjct: 914 SECSIC---TQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYK 970
Query: 367 LVCLYHSD 374
+ L H D
Sbjct: 971 IFKLRHRD 978
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 307 TSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366
T+ ++ Q + C +C + P A C HVFC CI W N++ CPLCR I++ S
Sbjct: 342 TTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLISNHS 401
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 320 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 374
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+ S+V SD
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV--ESVVHTIESD 60
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 320 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 374
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+ S+V SD
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV--ESVVHTIESD 60
>sp|Q9VPT5|PEX12_DROME Putative peroxisome assembly protein 12 OS=Drosophila melanogaster
GN=pex12 PE=2 SV=1
Length = 297
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 313 QAAPGVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371
Q+ P +C +CL + Q PTA + G+VFCW CI+ E CP+ PI+ LV +Y
Sbjct: 236 QSLPQRGECPVCLLSIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295
Query: 372 HS 373
+
Sbjct: 296 ET 297
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 314 AAPGVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372
AAP + C +CL A PC H FC CI W +P CPLC+AP+ SL+
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPV--QSLIHSVA 63
Query: 373 SD 374
SD
Sbjct: 64 SD 65
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 314 AAPGVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372
AAP + C +CL A PC H FC CI W +P CPLC+AP+ SL+
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPV--QSLIHSVA 63
Query: 373 SD 374
SD
Sbjct: 64 SD 65
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIME-WCNEKPECPLCRAPI 362
V C++CL +DP PCGH FC NCI + W + + CP CR P
Sbjct: 10 VVTCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPF 55
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 304 LDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363
++ S +Q C +C ++ + P C H+FC CI +W N++ CPLCR IT
Sbjct: 342 VNGAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVIT 401
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 290 GSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 349
G ++ SD G T+ E + +C +C Q P T CGH FC CI E+
Sbjct: 6 GQVVTDPSDFAG-----TTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYL 60
Query: 350 NEKPECPLCRAPITHSSL 367
N++ CPLC A + + L
Sbjct: 61 NKESRCPLCLAELRQNML 78
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 312 SQAAPGVSKCTLCLSNRQDPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369
+ A+P SKC +CL +R D + C H FC+ C+ EW K ECPLC+ P
Sbjct: 96 ADASPD-SKCPICL-DRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFD-----S 148
Query: 370 LYHS 373
++HS
Sbjct: 149 IFHS 152
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 312 SQAAPGVSKCTLCLSNRQDPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369
+ A+P SKC +CL +R D + C H FC+ C+ EW K ECPLC+ P
Sbjct: 95 ADASPD-SKCPICL-DRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFD-----S 147
Query: 370 LYHS 373
++HS
Sbjct: 148 IFHS 151
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 291 SLIPSESDKGGWVLDSTSTSES-QAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 349
S I S S+ + D+ + E+ Q +C +C Q P T CGH +C+ C++ W
Sbjct: 54 SRISSNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWL 113
Query: 350 NEKPECPLCRAPI 362
E CP CR +
Sbjct: 114 KESKSCPTCRQKL 126
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 320 KCTLCLSN-RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362
C +CLS R+ C H FC+ C+ EW KPECPLC+ P
Sbjct: 101 NCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPF 144
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCR 359
+C +C DP +PCGH FC C+M+ + P+CP CR
Sbjct: 168 ECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHS 373
C LCL R +PT G VFC+ CI + NE +CP+ P L +Y +
Sbjct: 406 CPLCLKERTNPTICGSGFVFCYPCIFGYVNEHSKCPITFLPTNTEQLRKIYET 458
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 367
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 313 QAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371
Q + +C +C ++P TPCGH FC CI + + +P+CPLC + S L Y
Sbjct: 19 QELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLCLHELRESMLRSEY 77
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 310 SESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363
S+ Q + CT+C + Q P C H+FC CI W N + CPLCR I+
Sbjct: 324 SKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVIS 377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,140,868
Number of Sequences: 539616
Number of extensions: 5233556
Number of successful extensions: 13870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 13142
Number of HSP's gapped (non-prelim): 957
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)