Query 017241
Match_columns 375
No_of_seqs 265 out of 1906
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0317 Predicted E3 ubiquitin 100.0 3.2E-56 7E-61 405.1 16.1 285 10-372 5-293 (293)
2 PF04757 Pex2_Pex12: Pex2 / Pe 100.0 2.8E-30 6E-35 238.5 19.0 202 24-258 1-211 (229)
3 KOG2879 Predicted E3 ubiquitin 99.9 8.8E-26 1.9E-30 204.1 12.6 263 17-363 14-287 (298)
4 COG5574 PEX10 RING-finger-cont 99.6 4.6E-17 1E-21 147.5 -2.7 246 6-370 13-269 (271)
5 KOG0826 Predicted E3 ubiquitin 99.6 1.7E-13 3.6E-18 127.5 17.6 287 16-372 19-355 (357)
6 KOG0823 Predicted E3 ubiquitin 99.4 1.7E-13 3.7E-18 122.5 3.8 58 315-372 44-104 (230)
7 PLN03208 E3 ubiquitin-protein 99.4 7.6E-13 1.6E-17 116.4 5.3 57 316-372 16-88 (193)
8 KOG0320 Predicted E3 ubiquitin 99.2 6.7E-12 1.5E-16 107.7 3.3 56 316-371 129-186 (187)
9 smart00504 Ubox Modified RING 99.1 1E-10 2.3E-15 85.6 4.7 53 319-371 2-54 (63)
10 PF15227 zf-C3HC4_4: zinc fing 98.9 5.2E-10 1.1E-14 75.0 2.6 38 321-358 1-42 (42)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 4.8E-10 1E-14 74.1 2.1 38 321-358 1-39 (39)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 7.4E-10 1.6E-14 77.3 2.5 46 318-363 2-48 (50)
13 PF13639 zf-RING_2: Ring finge 98.9 5.3E-10 1.2E-14 75.9 1.1 40 320-359 2-44 (44)
14 PHA02929 N1R/p28-like protein; 98.9 1.6E-09 3.6E-14 99.4 4.2 48 316-363 172-227 (238)
15 TIGR00599 rad18 DNA repair pro 98.9 2.1E-09 4.5E-14 105.6 4.7 57 314-370 22-78 (397)
16 KOG2164 Predicted E3 ubiquitin 98.8 1.8E-09 3.9E-14 106.7 3.2 55 318-372 186-245 (513)
17 PF04564 U-box: U-box domain; 98.8 2.2E-09 4.9E-14 81.1 2.4 56 316-371 2-58 (73)
18 KOG0287 Postreplication repair 98.7 3.7E-09 8.1E-14 99.0 0.5 54 316-369 21-74 (442)
19 PHA02926 zinc finger-like prot 98.7 1.4E-08 3.1E-13 90.5 3.4 54 315-370 167-235 (242)
20 COG5432 RAD18 RING-finger-cont 98.7 7.6E-09 1.6E-13 95.1 1.5 52 316-367 23-74 (391)
21 PF00097 zf-C3HC4: Zinc finger 98.7 1.3E-08 2.8E-13 67.9 2.2 38 321-358 1-41 (41)
22 cd00162 RING RING-finger (Real 98.6 3.1E-08 6.8E-13 66.5 3.6 43 320-362 1-45 (45)
23 KOG0978 E3 ubiquitin ligase in 98.5 2.9E-08 6.4E-13 102.6 1.4 55 317-371 642-697 (698)
24 smart00184 RING Ring finger. E 98.5 1E-07 2.2E-12 61.8 3.5 38 321-358 1-39 (39)
25 COG5243 HRD1 HRD ubiquitin lig 98.5 6.6E-08 1.4E-12 91.8 2.3 49 314-362 283-344 (491)
26 PF13445 zf-RING_UBOX: RING-ty 98.4 9.8E-08 2.1E-12 64.1 2.0 35 321-356 1-43 (43)
27 PF14634 zf-RING_5: zinc-RING 98.4 1.6E-07 3.5E-12 63.6 2.8 41 320-360 1-44 (44)
28 PF12678 zf-rbx1: RING-H2 zinc 98.4 1.7E-07 3.6E-12 70.8 3.0 40 320-359 21-73 (73)
29 PF14835 zf-RING_6: zf-RING of 98.3 2.7E-07 5.9E-12 66.4 0.8 51 318-370 7-58 (65)
30 KOG4628 Predicted E3 ubiquitin 98.2 7.9E-07 1.7E-11 85.5 2.9 46 319-364 230-279 (348)
31 COG5540 RING-finger-containing 98.2 1.1E-06 2.3E-11 81.7 3.0 49 316-364 321-373 (374)
32 TIGR00570 cdk7 CDK-activating 98.1 2.3E-06 5.1E-11 81.0 4.3 54 318-371 3-62 (309)
33 KOG4172 Predicted E3 ubiquitin 98.1 5.3E-07 1.2E-11 62.2 -0.7 52 318-371 7-60 (62)
34 KOG0802 E3 ubiquitin ligase [P 98.1 1.7E-06 3.6E-11 89.8 2.3 52 316-367 289-345 (543)
35 KOG0824 Predicted E3 ubiquitin 98.0 2.8E-06 6.1E-11 79.1 2.1 50 318-367 7-57 (324)
36 COG5222 Uncharacterized conser 98.0 1.4E-06 3E-11 80.6 -0.4 87 283-369 229-328 (427)
37 KOG4265 Predicted E3 ubiquitin 98.0 4.4E-06 9.5E-11 79.8 2.8 48 316-363 288-336 (349)
38 KOG2177 Predicted E3 ubiquitin 97.9 4E-06 8.7E-11 79.3 1.5 45 316-360 11-55 (386)
39 COG5152 Uncharacterized conser 97.8 8.6E-06 1.9E-10 71.3 1.8 47 317-363 195-241 (259)
40 PF12861 zf-Apc11: Anaphase-pr 97.8 1.7E-05 3.7E-10 60.8 3.2 30 335-364 51-83 (85)
41 KOG4159 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 78.1 2.6 50 315-364 81-130 (398)
42 KOG0828 Predicted E3 ubiquitin 97.7 9.4E-05 2E-09 73.1 7.2 49 316-364 569-635 (636)
43 KOG0311 Predicted E3 ubiquitin 97.7 4.1E-06 8.9E-11 79.5 -2.7 49 316-364 41-91 (381)
44 KOG1734 Predicted RING-contain 97.6 1E-05 2.2E-10 74.1 -0.1 53 316-368 222-286 (328)
45 KOG3039 Uncharacterized conser 97.6 5.9E-05 1.3E-09 68.4 3.4 57 316-372 219-279 (303)
46 KOG1785 Tyrosine kinase negati 97.5 4E-05 8.6E-10 73.8 1.9 54 318-371 369-424 (563)
47 KOG0297 TNF receptor-associate 97.4 6.5E-05 1.4E-09 74.8 2.4 55 315-369 18-73 (391)
48 KOG1813 Predicted E3 ubiquitin 97.4 4.9E-05 1.1E-09 70.7 1.1 47 317-363 240-286 (313)
49 KOG1002 Nucleotide excision re 97.3 0.0001 2.2E-09 73.3 2.3 52 314-365 532-588 (791)
50 PF04641 Rtf2: Rtf2 RING-finge 97.3 0.00031 6.6E-09 66.2 4.6 57 315-372 110-170 (260)
51 KOG4692 Predicted E3 ubiquitin 97.3 0.00014 3.1E-09 69.1 2.2 48 316-363 420-467 (489)
52 PF11789 zf-Nse: Zinc-finger o 97.2 0.00017 3.7E-09 51.5 1.6 41 317-357 10-53 (57)
53 KOG4275 Predicted E3 ubiquitin 97.1 3.9E-05 8.4E-10 71.1 -2.7 49 318-372 300-349 (350)
54 KOG2660 Locus-specific chromos 97.1 0.00014 3.1E-09 68.8 0.6 50 316-365 13-63 (331)
55 COG5194 APC11 Component of SCF 97.0 0.00047 1E-08 51.7 2.6 29 335-363 53-81 (88)
56 KOG1571 Predicted E3 ubiquitin 96.9 0.00037 7.9E-09 66.9 1.6 47 314-363 301-347 (355)
57 KOG1645 RING-finger-containing 96.8 0.00044 9.5E-09 67.1 0.9 54 318-371 4-64 (463)
58 KOG1039 Predicted E3 ubiquitin 96.8 0.00074 1.6E-08 65.5 2.4 48 316-363 159-221 (344)
59 PF11793 FANCL_C: FANCL C-term 96.7 0.0004 8.6E-09 51.9 -0.4 47 318-364 2-67 (70)
60 COG5219 Uncharacterized conser 96.5 0.00069 1.5E-08 71.7 0.4 48 316-363 1467-1523(1525)
61 smart00744 RINGv The RING-vari 96.4 0.0027 5.9E-08 43.9 2.8 40 320-359 1-49 (49)
62 KOG0825 PHD Zn-finger protein 96.4 0.00063 1.4E-08 70.7 -1.0 49 316-364 121-172 (1134)
63 KOG0804 Cytoplasmic Zn-finger 96.3 0.0024 5.3E-08 62.8 2.3 47 315-363 172-222 (493)
64 PF14447 Prok-RING_4: Prokaryo 96.1 0.0035 7.5E-08 43.9 1.9 49 317-367 6-54 (55)
65 KOG0827 Predicted E3 ubiquitin 96.1 0.003 6.6E-08 61.0 2.0 51 318-368 4-61 (465)
66 KOG2930 SCF ubiquitin ligase, 96.0 0.0037 8E-08 49.3 1.7 27 335-361 80-106 (114)
67 KOG1493 Anaphase-promoting com 95.7 0.0031 6.7E-08 47.0 0.2 30 335-364 50-82 (84)
68 KOG4739 Uncharacterized protei 95.5 0.0037 8.1E-08 57.1 0.2 51 319-371 4-56 (233)
69 KOG1001 Helicase-like transcri 95.2 0.0044 9.5E-08 65.7 -0.4 48 319-367 455-504 (674)
70 KOG3970 Predicted E3 ubiquitin 95.2 0.015 3.2E-07 52.4 2.9 46 318-363 50-105 (299)
71 COG5236 Uncharacterized conser 95.2 0.017 3.6E-07 55.2 3.3 48 314-361 57-106 (493)
72 KOG2932 E3 ubiquitin ligase in 94.6 0.018 3.9E-07 54.2 1.8 44 318-363 90-134 (389)
73 COG5175 MOT2 Transcriptional r 94.6 0.024 5.2E-07 54.0 2.5 50 319-368 15-69 (480)
74 PF14570 zf-RING_4: RING/Ubox 94.4 0.026 5.7E-07 38.6 1.8 42 321-362 1-47 (48)
75 KOG2817 Predicted E3 ubiquitin 93.7 0.052 1.1E-06 53.0 3.0 56 316-371 332-393 (394)
76 PF10367 Vps39_2: Vacuolar sor 93.3 0.037 8.1E-07 44.3 1.2 31 316-346 76-108 (109)
77 KOG1814 Predicted E3 ubiquitin 92.8 0.059 1.3E-06 52.8 1.9 34 317-350 183-219 (445)
78 KOG4367 Predicted Zn-finger pr 92.6 0.067 1.4E-06 52.6 2.0 35 316-350 2-36 (699)
79 PF05290 Baculo_IE-1: Baculovi 92.4 0.11 2.4E-06 43.2 2.7 50 317-366 79-135 (140)
80 KOG1941 Acetylcholine receptor 92.3 0.043 9.4E-07 53.3 0.2 44 317-360 364-413 (518)
81 KOG4185 Predicted E3 ubiquitin 91.7 0.11 2.4E-06 49.7 2.3 44 319-362 4-54 (296)
82 KOG3268 Predicted E3 ubiquitin 91.2 0.14 3.1E-06 44.6 2.2 48 317-364 164-229 (234)
83 PHA03096 p28-like protein; Pro 91.1 0.11 2.5E-06 49.3 1.7 42 319-360 179-231 (284)
84 KOG3039 Uncharacterized conser 90.3 0.17 3.7E-06 46.4 2.0 33 317-349 42-74 (303)
85 PF07800 DUF1644: Protein of u 90.1 0.34 7.3E-06 41.6 3.5 50 318-367 2-95 (162)
86 KOG2114 Vacuolar assembly/sort 90.0 0.16 3.5E-06 54.1 1.8 41 317-360 839-880 (933)
87 KOG2034 Vacuolar sorting prote 89.6 0.16 3.5E-06 54.3 1.5 34 316-349 815-850 (911)
88 PHA02825 LAP/PHD finger-like p 89.2 0.47 1E-05 40.8 3.7 47 316-363 6-59 (162)
89 KOG3113 Uncharacterized conser 88.9 0.39 8.4E-06 44.3 3.2 54 316-371 109-166 (293)
90 KOG4445 Uncharacterized conser 88.9 0.11 2.5E-06 48.8 -0.2 47 317-363 114-186 (368)
91 PF08746 zf-RING-like: RING-li 88.4 0.45 9.7E-06 31.8 2.5 38 321-358 1-43 (43)
92 KOG3579 Predicted E3 ubiquitin 87.6 0.35 7.5E-06 45.3 2.1 35 316-350 266-304 (352)
93 COG5109 Uncharacterized conser 87.4 0.37 8.1E-06 45.7 2.1 56 316-371 334-395 (396)
94 PF10272 Tmpp129: Putative tra 86.7 0.75 1.6E-05 45.2 3.9 34 336-369 311-357 (358)
95 PF05883 Baculo_RING: Baculovi 86.6 0.28 6E-06 41.1 0.8 36 318-353 26-70 (134)
96 KOG1100 Predicted E3 ubiquitin 86.3 0.34 7.3E-06 44.0 1.2 39 321-363 161-200 (207)
97 KOG1428 Inhibitor of type V ad 85.4 0.54 1.2E-05 52.9 2.4 49 316-364 3484-3545(3738)
98 PF02891 zf-MIZ: MIZ/SP-RING z 85.3 0.55 1.2E-05 32.5 1.6 42 319-361 3-50 (50)
99 KOG3002 Zn finger protein [Gen 85.1 0.67 1.4E-05 44.5 2.7 46 315-363 45-91 (299)
100 KOG0309 Conserved WD40 repeat- 84.6 0.54 1.2E-05 49.6 1.9 32 332-363 1044-1076(1081)
101 KOG1940 Zn-finger protein [Gen 84.2 0.61 1.3E-05 44.0 1.9 43 318-360 158-204 (276)
102 KOG0298 DEAD box-containing he 84.0 0.24 5.2E-06 55.1 -0.9 44 317-360 1152-1196(1394)
103 PHA02862 5L protein; Provision 82.8 1.1 2.3E-05 38.0 2.6 44 319-363 3-53 (156)
104 COG5220 TFB3 Cdk activating ki 82.7 0.4 8.7E-06 43.8 0.1 47 316-362 8-63 (314)
105 PF03854 zf-P11: P-11 zinc fin 82.7 0.46 9.9E-06 32.2 0.3 44 319-364 3-47 (50)
106 KOG1952 Transcription factor N 81.9 0.8 1.7E-05 49.0 1.9 46 315-360 188-244 (950)
107 KOG4362 Transcriptional regula 81.4 0.33 7.2E-06 51.0 -1.0 49 318-366 21-72 (684)
108 KOG3899 Uncharacterized conser 80.9 0.72 1.6E-05 43.4 1.0 35 336-370 325-372 (381)
109 KOG3842 Adaptor protein Pellin 79.2 2 4.4E-05 40.9 3.4 48 316-363 339-414 (429)
110 PRK04023 DNA polymerase II lar 79.0 1.5 3.3E-05 48.0 2.8 50 315-366 623-677 (1121)
111 KOG1812 Predicted E3 ubiquitin 77.5 1.1 2.4E-05 44.6 1.3 50 317-366 145-206 (384)
112 PF04216 FdhE: Protein involve 75.7 0.47 1E-05 45.4 -1.9 46 316-361 170-220 (290)
113 KOG3161 Predicted E3 ubiquitin 75.5 0.85 1.8E-05 47.3 -0.2 38 317-356 10-51 (861)
114 KOG1815 Predicted E3 ubiquitin 74.5 2.7 5.8E-05 42.8 3.2 53 316-368 68-131 (444)
115 TIGR01562 FdhE formate dehydro 74.5 1.1 2.4E-05 43.1 0.3 45 317-361 183-233 (305)
116 KOG3800 Predicted E3 ubiquitin 74.5 1.9 4.1E-05 40.7 1.8 31 335-365 22-53 (300)
117 PF12906 RINGv: RING-variant d 73.6 2.3 4.9E-05 29.0 1.6 38 321-358 1-47 (47)
118 PF06271 RDD: RDD family; Int 73.6 12 0.00026 30.6 6.5 38 55-92 53-90 (137)
119 PRK03564 formate dehydrogenase 72.3 1.5 3.3E-05 42.2 0.7 44 317-360 186-234 (309)
120 COG5183 SSM4 Protein involved 71.2 3.7 7.9E-05 44.0 3.2 52 316-367 10-70 (1175)
121 KOG0269 WD40 repeat-containing 70.6 3.8 8.3E-05 43.5 3.2 50 318-367 779-832 (839)
122 KOG1812 Predicted E3 ubiquitin 70.3 2.1 4.6E-05 42.7 1.2 42 317-358 305-351 (384)
123 KOG2113 Predicted RNA binding 69.3 3.7 8E-05 39.2 2.5 50 317-370 342-392 (394)
124 COG0068 HypF Hydrogenase matur 67.8 2.4 5.3E-05 44.8 1.1 49 314-362 97-183 (750)
125 PF04710 Pellino: Pellino; In 66.4 1.9 4.1E-05 42.5 0.0 55 317-371 327-410 (416)
126 KOG2068 MOT2 transcription fac 65.3 4.8 0.00011 38.8 2.5 47 317-363 248-298 (327)
127 KOG0825 PHD Zn-finger protein 62.8 8.9 0.00019 41.1 4.0 46 317-362 95-153 (1134)
128 PF04088 Peroxin-13_N: Peroxin 62.7 26 0.00057 30.4 6.3 26 91-116 132-157 (158)
129 COG4696 Uncharacterized protei 60.0 28 0.00061 29.7 5.8 61 8-68 29-109 (180)
130 KOG4718 Non-SMC (structural ma 55.4 5.9 0.00013 35.7 1.1 44 318-361 181-225 (235)
131 TIGR00622 ssl1 transcription f 55.2 14 0.0003 30.1 3.1 42 318-359 55-110 (112)
132 PF06906 DUF1272: Protein of u 53.9 18 0.00038 25.6 3.0 44 320-365 7-54 (57)
133 PRK14714 DNA polymerase II lar 51.8 8 0.00017 43.7 1.7 48 317-364 666-721 (1337)
134 PF15616 TerY-C: TerY-C metal 51.7 6.6 0.00014 32.9 0.8 43 316-364 75-117 (131)
135 TIGR00143 hypF [NiFe] hydrogen 51.5 6.2 0.00013 42.6 0.8 49 314-362 64-150 (711)
136 KOG0883 Cyclophilin type, U bo 50.0 15 0.00032 36.3 3.0 56 316-371 38-93 (518)
137 KOG0824 Predicted E3 ubiquitin 49.2 5.7 0.00012 37.8 0.1 48 316-363 103-151 (324)
138 PF07975 C1_4: TFIIH C1-like d 48.4 8.9 0.00019 26.7 0.9 25 335-359 26-50 (51)
139 PF07191 zinc-ribbons_6: zinc- 47.5 1.2 2.6E-05 33.0 -3.7 40 319-363 2-41 (70)
140 PF13240 zinc_ribbon_2: zinc-r 47.1 3.6 7.9E-05 23.5 -1.0 7 354-360 15-21 (23)
141 KOG3799 Rab3 effector RIM1 and 46.0 7.7 0.00017 32.4 0.3 30 316-349 63-92 (169)
142 smart00064 FYVE Protein presen 46.0 18 0.00039 26.1 2.3 32 318-349 10-45 (68)
143 KOG3053 Uncharacterized conser 45.6 12 0.00026 34.9 1.5 48 316-363 18-82 (293)
144 KOG0827 Predicted E3 ubiquitin 45.6 1.6 3.4E-05 42.8 -4.3 47 318-364 196-246 (465)
145 KOG2807 RNA polymerase II tran 44.8 15 0.00033 35.3 2.1 43 317-359 329-374 (378)
146 PF10497 zf-4CXXC_R1: Zinc-fin 44.1 17 0.00037 29.3 2.0 25 337-361 37-70 (105)
147 PF06844 DUF1244: Protein of u 43.6 13 0.00029 27.1 1.2 12 339-350 11-22 (68)
148 PF14446 Prok-RING_1: Prokaryo 42.5 29 0.00063 24.4 2.7 30 318-347 5-38 (54)
149 COG3813 Uncharacterized protei 42.4 17 0.00038 27.0 1.7 31 337-369 28-58 (84)
150 PF10235 Cript: Microtubule-as 41.1 18 0.00038 28.3 1.6 37 318-363 44-80 (90)
151 cd00065 FYVE FYVE domain; Zinc 41.1 20 0.00042 24.8 1.8 31 319-349 3-37 (57)
152 PF03833 PolC_DP2: DNA polymer 41.0 9 0.0002 41.5 0.0 46 316-363 653-703 (900)
153 smart00132 LIM Zinc-binding do 40.5 28 0.00061 21.4 2.3 35 320-362 1-37 (39)
154 PLN02638 cellulose synthase A 39.7 34 0.00073 38.4 4.1 46 318-363 17-70 (1079)
155 PF01363 FYVE: FYVE zinc finge 39.6 7.5 0.00016 28.3 -0.6 31 317-347 8-42 (69)
156 PF04710 Pellino: Pellino; In 39.6 9.8 0.00021 37.7 0.0 47 317-363 276-339 (416)
157 PLN02189 cellulose synthase 38.9 26 0.00056 39.2 3.0 47 317-363 33-87 (1040)
158 PF10571 UPF0547: Uncharacteri 37.9 11 0.00023 22.3 0.0 9 320-328 2-10 (26)
159 COG3058 FdhE Uncharacterized p 37.2 21 0.00045 33.7 1.8 45 317-361 184-234 (308)
160 KOG0801 Predicted E3 ubiquitin 35.4 14 0.00031 31.9 0.4 26 316-341 175-203 (205)
161 KOG1609 Protein involved in mR 35.4 26 0.00056 33.4 2.2 47 318-364 78-135 (323)
162 smart00647 IBR In Between Ring 35.4 8 0.00017 27.3 -1.0 15 335-349 45-59 (64)
163 KOG4451 Uncharacterized conser 34.5 25 0.00055 32.1 1.8 24 340-363 251-274 (286)
164 PF13248 zf-ribbon_3: zinc-rib 33.7 8.5 0.00018 22.6 -0.9 8 353-360 17-24 (26)
165 PTZ00303 phosphatidylinositol 33.2 27 0.00059 37.6 2.0 30 319-348 461-499 (1374)
166 PF10146 zf-C4H2: Zinc finger- 32.6 32 0.00069 31.8 2.2 24 340-363 196-219 (230)
167 KOG1729 FYVE finger containing 32.0 22 0.00048 34.0 1.1 47 316-362 166-224 (288)
168 PF13972 TetR: Bacterial trans 31.6 10 0.00022 32.0 -1.2 102 7-117 38-143 (146)
169 KOG2113 Predicted RNA binding 31.6 17 0.00036 34.9 0.2 47 316-362 134-182 (394)
170 PF00412 LIM: LIM domain; Int 31.1 28 0.00061 23.9 1.3 28 318-345 26-54 (58)
171 KOG1356 Putative transcription 30.7 17 0.00037 39.3 0.1 48 316-363 227-282 (889)
172 smart00290 ZnF_UBP Ubiquitin C 30.4 33 0.00071 23.1 1.5 25 320-344 1-25 (50)
173 PF09986 DUF2225: Uncharacteri 29.7 17 0.00037 33.1 -0.1 52 317-368 4-64 (214)
174 PLN02436 cellulose synthase A 29.6 47 0.001 37.3 3.2 46 318-363 36-89 (1094)
175 PF14353 CpXC: CpXC protein 29.4 45 0.00097 27.5 2.4 45 319-363 2-49 (128)
176 PLN02195 cellulose synthase A 28.9 53 0.0012 36.6 3.4 46 318-363 6-59 (977)
177 KOG1829 Uncharacterized conser 28.6 20 0.00042 37.6 0.1 23 333-358 534-556 (580)
178 KOG0802 E3 ubiquitin ligase [P 28.3 41 0.00088 35.2 2.4 49 314-366 475-523 (543)
179 COG4647 AcxC Acetone carboxyla 27.7 30 0.00064 28.8 1.0 23 322-344 61-83 (165)
180 KOG1814 Predicted E3 ubiquitin 27.2 31 0.00067 34.4 1.2 34 316-349 366-405 (445)
181 PF09723 Zn-ribbon_8: Zinc rib 27.2 18 0.00039 23.8 -0.3 27 333-360 8-34 (42)
182 cd00350 rubredoxin_like Rubred 26.9 43 0.00093 20.7 1.4 11 351-361 16-26 (33)
183 PLN02400 cellulose synthase 26.8 36 0.00078 38.2 1.7 46 318-363 36-89 (1085)
184 PF04423 Rad50_zn_hook: Rad50 26.7 21 0.00046 24.7 -0.0 11 354-364 22-32 (54)
185 PF02318 FYVE_2: FYVE-type zin 26.5 29 0.00064 28.3 0.8 44 317-360 53-102 (118)
186 KOG2979 Protein involved in DN 26.2 37 0.0008 31.7 1.4 44 317-360 175-221 (262)
187 PF06750 DiS_P_DiS: Bacterial 25.9 33 0.00071 26.9 0.9 10 354-363 60-69 (92)
188 PF12132 DUF3587: Protein of u 25.8 52 0.0011 29.7 2.3 23 328-350 151-177 (199)
189 COG4997 Uncharacterized conser 25.5 1.9E+02 0.0041 22.3 4.8 46 14-63 12-65 (95)
190 PF09889 DUF2116: Uncharacteri 25.3 38 0.00083 24.3 1.1 16 352-367 3-18 (59)
191 smart00734 ZnF_Rad18 Rad18-lik 25.3 25 0.00055 20.6 0.1 10 354-363 3-12 (26)
192 PF14569 zf-UDP: Zinc-binding 25.3 69 0.0015 24.3 2.4 46 318-363 9-62 (80)
193 KOG2169 Zn-finger transcriptio 24.6 49 0.0011 35.4 2.2 51 317-367 305-360 (636)
194 PLN02915 cellulose synthase A 24.5 96 0.0021 34.9 4.4 47 317-363 14-68 (1044)
195 COG3132 Uncharacterized protei 24.3 1.7E+02 0.0036 25.9 5.0 69 9-78 27-115 (215)
196 KOG1815 Predicted E3 ubiquitin 23.6 28 0.00062 35.4 0.2 19 330-348 178-196 (444)
197 PF13901 DUF4206: Domain of un 23.4 55 0.0012 29.5 2.0 38 318-360 152-197 (202)
198 COG3492 Uncharacterized protei 23.3 35 0.00075 26.6 0.6 13 339-351 42-54 (104)
199 COG4098 comFA Superfamily II D 22.8 34 0.00074 33.6 0.6 31 316-346 37-68 (441)
200 KOG1819 FYVE finger-containing 22.5 49 0.0011 33.8 1.6 30 317-346 900-933 (990)
201 KOG4218 Nuclear hormone recept 22.2 29 0.00064 33.7 0.0 14 316-329 13-26 (475)
202 KOG3362 Predicted BBOX Zn-fing 22.1 31 0.00067 29.3 0.1 30 316-346 116-146 (156)
203 PLN02248 cellulose synthase-li 21.7 65 0.0014 36.4 2.4 32 335-366 149-180 (1135)
204 PF12773 DZR: Double zinc ribb 20.7 82 0.0018 21.1 2.0 12 353-364 30-41 (50)
205 cd01407 SIR2-fam SIR2 family o 20.2 1.3E+02 0.0029 27.1 3.9 14 352-365 133-146 (218)
206 PF05502 Dynactin_p62: Dynacti 20.2 52 0.0011 33.9 1.3 13 317-329 25-37 (483)
No 1
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-56 Score=405.10 Aligned_cols=285 Identities=36% Similarity=0.682 Sum_probs=222.5
Q ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccceEEecCCC
Q 017241 10 PPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQ 89 (375)
Q Consensus 10 p~A~~p~IvRa~QkD~~~~~~L~~~l~~~~~~l~g~r~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l~~v~~~~ 89 (375)
++|++|+|||+.||||+|.+.+.++++++.+.+.|+|.|++|++|+..+++++||.+||..+.||+||||++|+++|+.+
T Consensus 5 ~~a~~p~ivr~tq~de~~~~~l~~~~s~~~~~lag~r~~i~~~~~l~~~a~~ly~~~at~~~~~tlgEEy~~i~~~~~~~ 84 (293)
T KOG0317|consen 5 AHADPPEIVRSTQKDEYYIGYLISSLSGLSRTLAGPRAWIRYRKELVLIAEVLYFGFATDARYQTLGEEYVSIIESNPLR 84 (293)
T ss_pred cccCchHHHHHhhhHHHhhhhhhhhhHhHhhhhcchHHHHhhccchhhhhchhhheeehhccccccchhhhhhheecCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccCCCCcccccccCCCCCCCcchhhHHHHHH
Q 017241 90 RLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLK 169 (375)
Q Consensus 90 ~~~ps~~rR~l~vll~~~~pyl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
.++|+..+|+.+++++.+.||+.+++.+++.... + .. + +. .
T Consensus 85 ~~~pssl~~~~~v~~~~v~~~~~~~l~~~l~q~l--------~--------------~~-----~--~i----------~ 125 (293)
T KOG0317|consen 85 LRLPSSLRRIVFVASHLVLPLLLDKLTKKLMQAL--------Q--------------SS-----S--EI----------L 125 (293)
T ss_pred cccCchhhhHHHHHHHHHHHHHhHHHHHHHHHhh--------c--------------cC-----c--cc----------c
Confidence 9999999999999999999999999998874311 0 00 0 00 0
Q ss_pred HHhhhHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhccccchhhhhhcCceEEeecCC----CCCChhHHHHHHHHHH
Q 017241 170 EKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKP----TNQRPRYQILGVFLLI 245 (375)
Q Consensus 170 ~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~lhl~lFy~~G~Yy~l~kRi~giryv~~~~~----~~~~~sy~~Lg~lll~ 245 (375)
...+ .+++++.. .+.++|.++||++|.||+|+||++||||++.+.. .+.+..|++||+++++
T Consensus 126 p~~~-------------~~~l~~l~-~v~~~h~~lFY~~g~~y~IskRltgI~yv~~~~~~~~~~~~~q~y~iLg~I~L~ 191 (293)
T KOG0317|consen 126 PQAR-------------RNFLRGLF-AVLRAHKALFYINGSFYSISKRLTGIRYVLARTLKGHEANASQPYKILGYILLI 191 (293)
T ss_pred cHHH-------------HHHhhhHH-HHHHHhhheEEecCchHHHHHhhccceEEEEecccccccccccceeeechhhHH
Confidence 0000 01122233 7899999999999999999999999999999732 3456789999999999
Q ss_pred HHHHHHhhchhccccccccccccccccccccccCCCCCcccCCCCCCCCCCCCCCCccccCCCCcccCCCCCCccccccC
Q 017241 246 QLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCL 325 (375)
Q Consensus 246 ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~ 325 (375)
|+.+....+........-. +..+..+ .++. +..+. ....+++.......+|.+|+
T Consensus 192 ql~~slg~r~~~s~~q~~~-------------s~~e~~~----e~~~-----~~~~~---~~s~~~~~i~~a~~kC~LCL 246 (293)
T KOG0317|consen 192 QLLLSLGSRLYASFLQHKR-------------SSTESIE----ESKL-----NHSKL---EDSNSLSSIPEATRKCSLCL 246 (293)
T ss_pred HHHHhhhhHHHHHHHhccc-------------ccccccc----cccc-----cccch---hhccCCccCCCCCCceEEEe
Confidence 9776655444311100000 0000000 0000 00000 00111223455679999999
Q ss_pred CCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 326 SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 326 ~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
+.+.+|.++||||+|||.||.+|+.++.+||+||..+++++++.|++
T Consensus 247 e~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr~ 293 (293)
T KOG0317|consen 247 ENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLRH 293 (293)
T ss_pred cCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeecC
Confidence 99999999999999999999999999999999999999999999875
No 2
>PF04757 Pex2_Pex12: Pex2 / Pex12 amino terminal region; InterPro: IPR006845 This region is the N-terminal part of a number of peroxisomal biogenesis proteins, including Pex2, Pex10 and Pex12, which contain two predicted transmembrane segments. The majority of these proteins have a C-terminal ring finger domain IPR001841 from INTERPRO.; GO: 0007031 peroxisome organization, 0005778 peroxisomal membrane
Probab=99.97 E-value=2.8e-30 Score=238.46 Aligned_cols=202 Identities=30% Similarity=0.389 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHHHHhc---chhHHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccceEEecCC---C-CCCCchh
Q 017241 24 DEQYASFIYDACRDAFRQLF---GTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGP---Q-RLPPTPA 96 (375)
Q Consensus 24 D~~~~~~L~~~l~~~~~~l~---g~r~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l~~v~~~---~-~~~ps~~ 96 (375)
|+++.+.|++++.++++.+. |++++.+|.+|+.++++++|+++|++.+++|+||||+||++++.. . +..|+..
T Consensus 1 d~~l~~~L~~~l~~i~~~l~~~~~~~~~~~~~~Ei~~ll~~l~~~~tl~~~~~T~gE~~~~L~r~~~~~~~~~~~~ls~~ 80 (229)
T PF04757_consen 1 DEELESLLKPALSYILQYLAQPRGPRRLLRYFDEIFLLLKLLYESLTLLRGNQTFGEEFYGLKRVNSRSSSRERRPLSRR 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCeEEeeccccccccCCCCHH
Confidence 89999999999999999999 999999999999999999999999999999999999999999843 3 6789999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccCCCCcccccccCCCCCCCcchhhHHHHHHHHhhhHH
Q 017241 97 RRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLR 176 (375)
Q Consensus 97 rR~l~vll~~~~pyl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (375)
+|++++++.|++||+.+|+...+.+......+ .... .. +.........+|+..
T Consensus 81 ~r~~~l~~~vl~PYl~~Kl~~~~~~~~~~~~~-----~~~~--------~~---------~~~~~~~~~~~~~~~----- 133 (229)
T PF04757_consen 81 QRLLSLLLLVLGPYLKEKLDSLLERLSERSAE-----SISS--------RS---------ARARRARLKSKLKRR----- 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----cccc--------hh---------hhhhhhHHHHHHHHH-----
Confidence 99999999999999999999987543211000 0000 00 000000011122222
Q ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhccc-cchhhhhhcCceEEeecC-CCCCChhHHHHHHHHHHHHHHHHhhc
Q 017241 177 LYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGL-YYHISKRTAGIRYVFIGK-PTNQRPRYQILGVFLLIQLCIIAAEG 254 (375)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~lhl~lFy~~G~-Yy~l~kRi~giryv~~~~-~~~~~~sy~~Lg~lll~ql~~~~~~~ 254 (375)
+.++++.++.++..+..+|+++||++|+ |+++++|++||+|++..+ +..+.++|+++|.++++|.++..+..
T Consensus 134 ------~~~~~~~~~~~~~~~~~~~~~~Fl~~g~~y~s~~~rllgi~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 207 (229)
T PF04757_consen 134 ------FVKLYPYLNALYELLNLLHLLLFLLGGTPYYSPSKRLLGIRYVRLSPSDLQRNPSYEFLGRQLLWQLLSEFLLF 207 (229)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhCcEEEECCccchhhhccHHHHHHHHHHHHHHHHHHH
Confidence 2235677888999999999999999999 999999999999999944 34556899999999999999988776
Q ss_pred hhcc
Q 017241 255 LRRS 258 (375)
Q Consensus 255 ~r~~ 258 (375)
+.+.
T Consensus 208 ~~~~ 211 (229)
T PF04757_consen 208 LLPL 211 (229)
T ss_pred HHHH
Confidence 6543
No 3
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.8e-26 Score=204.08 Aligned_cols=263 Identities=16% Similarity=0.229 Sum_probs=185.1
Q ss_pred hhhhhhhh-----HHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccceEEecCCCCC
Q 017241 17 IMRAAEKD-----EQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRL 91 (375)
Q Consensus 17 IvRa~QkD-----~~~~~~L~~~l~~~~~~l~g~r~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l~~v~~~~~~ 91 (375)
|-|.+|.| .++..+|++|+.++|...+ +....+++||++++++.+.|.++.+....|+|+...|+.|.++....
T Consensus 14 v~Rv~QlDai~Ldkdls~~l~~qf~~~F~~~~-p~~~~r~epe~~~vl~~~iw~~si~~~~~T~Gqall~v~y~~ek~~~ 92 (298)
T KOG2879|consen 14 VPRVNQLDAILLDKDLSFLLWSQFVSIFLYYK-PGLLLRVEPELDAVLDSAIWFFSIYSVDDTVGQALLNVAYIFEKLPV 92 (298)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhcHHHhHHHHHHHHheeccCCCCcccchhhhHHhhhccCce
Confidence 56667766 4777899999999996555 66678999999999999999999999999999999999998875521
Q ss_pred CCchhH-HHHHHHHHhhHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccCCCCcccccccCCCCCCCcchhhHHHHHHH
Q 017241 92 PPTPAR-RALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKE 170 (375)
Q Consensus 92 ~ps~~r-R~l~vll~~~~pyl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
+-.... ++.+.+.++++.|+.+|..--+.. ..|..
T Consensus 93 ~r~~l~g~IW~~v~sig~~~~~~r~qm~l~r--------------------------------------------~~~~~ 128 (298)
T KOG2879|consen 93 LRVVLEGKIWTHVFSIGGSWLEERNQMDLFR--------------------------------------------AGWVN 128 (298)
T ss_pred EEEeecceEEEEeccccCCchhhhhHHHHHH--------------------------------------------hhhhh
Confidence 111111 344456667777777764410100 00111
Q ss_pred HhhhHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhccccchhhhhhcCceEEeecCCCCCChhHHHHHHHHHHHHHHH
Q 017241 171 KLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCII 250 (375)
Q Consensus 171 r~~~~~~~~~~~l~~~~~~~~~~~~~~~~lhl~lFy~~G~Yy~l~kRi~giryv~~~~~~~~~~sy~~Lg~lll~ql~~~ 250 (375)
.+.++ -..+..++.+++.+..+||..|+..|+|||+.++|+|+++|+-.+..++.++||+|++.|+|.-+..
T Consensus 129 ~~~~~--------~~~v~~ve~i~~~~~~~n~l~fL~~gr~~tlie~il~~~si~~~~~~~R~ig~eY~NReLlW~~F~e 200 (298)
T KOG2879|consen 129 LTPKL--------ITSVFMVEGILKALGMLNLLSFLYRGRMYTLIEAILGLGSILHFPYFNRSIGYEYQNRELLWNAFRE 200 (298)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccchhhhcccccchhhhHHHHHHHHHHHHHH
Confidence 11111 1134556788888999999999999999999999999999999888888999999999999998877
Q ss_pred HhhchhccccccccccccccccccccccCCCCCcccCCCCCCCCCCCCCCCcccc--CCCCcccCCCCCCccccccCCCC
Q 017241 251 AAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLD--STSTSESQAAPGVSKCTLCLSNR 328 (375)
Q Consensus 251 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~C~iC~~~~ 328 (375)
.+......+....... ++ ..|..+ ..+.......+.+.+|++|.+.+
T Consensus 201 ~ll~~lp~I~~~k~r~------------------~l-------------~sw~~~l~~ap~~sss~~t~~~~C~~Cg~~P 249 (298)
T KOG2879|consen 201 VLLLTLPFINFRKLRR------------------VL-------------KSWKLDLDRAPKFSSSTGTSDTECPVCGEPP 249 (298)
T ss_pred HHHHHHHHHHHHHHHH------------------HH-------------HhhcccccCCCCcccccccCCceeeccCCCC
Confidence 6554332221000000 00 000000 00000111335678999999999
Q ss_pred CCCeeeC-CCCccchhhHHHHHh--cCCCCCCccCCCC
Q 017241 329 QDPTATP-CGHVFCWNCIMEWCN--EKPECPLCRAPIT 363 (375)
Q Consensus 329 ~~p~~~~-CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 363 (375)
..|.... |||+|||.|+...+. ..+.||.|..++.
T Consensus 250 tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 250 TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 9998876 999999999988765 4489999999877
No 4
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.6e-17 Score=147.45 Aligned_cols=246 Identities=20% Similarity=0.277 Sum_probs=142.6
Q ss_pred CCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccceEEe
Q 017241 6 TRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQV 85 (375)
Q Consensus 6 ~~~fp~A~~p~IvRa~QkD~~~~~~L~~~l~~~~~~l~g~r~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l~~v 85 (375)
..++++|+.+.+++++|+ +++ ++++......-+.+.+..+.+...+++|+.+++ |.|||++|++.-
T Consensus 13 ~lr~~~~~~~~~~Q~~~~---~~g------~~~i~~~~s~~~~n~~~~p~~v~~~~~~~p~~s-----t~~eE~vd~~~~ 78 (271)
T COG5574 13 NLRNKRADLESVRQFAES---IEG------SNAISRRRSRFFSNVPGYPMDVREKILERPSGS-----TSEEEAVDLIAA 78 (271)
T ss_pred heecccccchhHHHHHHH---Hhh------hhhhhhhhhhhcccCCCCccchHHHhcccCccc-----cccchhhhhhhh
Confidence 467899999999988888 334 556666666666788889999999999998888 999999999985
Q ss_pred cC-CCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccCCCCcccccccCCCCCCCcchhhH
Q 017241 86 VG-PQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSA 164 (375)
Q Consensus 86 ~~-~~~~~ps~~rR~l~vll~~~~pyl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (375)
.+ ++.+..+ + +.+.. .+ . .+..
T Consensus 79 ~rs~gl~e~~--------------------~-S~~~~----------~~-------------~----ls~~--------- 101 (271)
T COG5574 79 IRSKGLREDS--------------------L-SRFNR----------EE-------------T----LSIE--------- 101 (271)
T ss_pred ccccCceecc--------------------c-ccccc----------cc-------------c----cccc---------
Confidence 54 2222222 0 11100 00 0 0000
Q ss_pred HHHHHHHhhhHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhccccchhhhhhcCceEEeecCCC--CCC--hhHHHHH
Q 017241 165 VSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPT--NQR--PRYQILG 240 (375)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~lhl~lFy~~G~Yy~l~kRi~giryv~~~~~~--~~~--~sy~~Lg 240 (375)
.+ .+.....+--+||+.|.++.+..+..++++ +-.-.. ... ..+.+++
T Consensus 102 ----------------------~s-----~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~-~k~t~~~h~as~~~l~~~~~ 153 (271)
T COG5574 102 ----------------------YS-----RETNIDKEGEVLYPCGIFFCIGCDYIWSID-LKQTANTHEASPSQLLKFLP 153 (271)
T ss_pred ----------------------cC-----cccccccccceeeecccccchhhhHHHHHH-HHHhhcCCCCCHHHHhccCC
Confidence 00 012234455689999999999999999997 322211 112 2344444
Q ss_pred HHHHHHHHHHHhhchhccccccccccccccccccccccCCCCCcccCC---CCCCCCCCCCCCCccccCCC-CcccCCCC
Q 017241 241 VFLLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNE---EGSLIPSESDKGGWVLDSTS-TSESQAAP 316 (375)
Q Consensus 241 ~lll~ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (375)
.+.+-+...+...-+-... ..+..+ |..+++.. ....+...... +.+. ..-+....
T Consensus 154 ~i~l~~~~~e~~~dlt~~~-l~l~~s--------------r~~~i~q~sn~~~~~~q~Itke-----n~s~kn~~pfip~ 213 (271)
T COG5574 154 TIRLAMNIPEVISDLTAVA-LSLDES--------------RLQPILQPSNNLHTLFQVITKE-----NLSKKNGLPFIPL 213 (271)
T ss_pred eeecccCChHHHHHHHHHH-HhcCch--------------hcCccccccCCcccceeecccc-----cccccccCCcccc
Confidence 3332222222110000000 000000 00000000 00001110000 0111 11112335
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHH-HHhcCCC-CCCccCCCCCCCceec
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIME-WCNEKPE-CPLCRAPITHSSLVCL 370 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~-~~~~~~~-CP~Cr~~~~~~~~~~l 370 (375)
.+++|+||++.+..|.+++|||+|||.||.. |...+.. ||+||+.+.+++++-+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 6899999999999999999999999999999 8887776 9999999998888543
No 5
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.7e-13 Score=127.54 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=171.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhcchh---HHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccceEEecCC----
Q 017241 16 EIMRAAEKDEQYASFIYDACRDAFRQLFGTR---VAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGP---- 88 (375)
Q Consensus 16 ~IvRa~QkD~~~~~~L~~~l~~~~~~l~g~r---~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l~~v~~~---- 88 (375)
||+-+.+.|.-+.-.|+--+. +| .++.++ .+++|..|+-.+++++.-....-.-+.|++|.+-+|.....+
T Consensus 19 Ei~Asq~L~t~lrpAL~~ll~-~~-A~~~~~~~~~l~r~fdE~f~~l~liLq~hyLr~~~sSF~E~fYgLqr~ss~drl~ 96 (357)
T KOG0826|consen 19 EIMASQELDTLLRPALQYLLK-YF-ALRPPRYLLRLLRYFDEWFQALDLILQWHYLRTYNSSFIESFYGLQRISSRDRLT 96 (357)
T ss_pred hhHhhhhHHHhhHHHHHHHHH-HH-HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHhhhhhhhhhcccccc
Confidence 678889999888877776654 55 444443 367999999999999987777777788999999999876543
Q ss_pred ----CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhcccchhhhhhhccCCCCcccccccCCCCCCCcchhhH
Q 017241 89 ----QRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSA 164 (375)
Q Consensus 89 ----~~~~ps~~rR~l~vll~~~~pyl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (375)
++..--..+|++.++..|+.||+..|+...+.+.. |.... +| + +
T Consensus 97 se~~~~~~l~krQr~~s~~~lv~lPYv~~KL~~i~~k~~---------e~~~~----~S----------~--e------- 144 (357)
T KOG0826|consen 97 SEWPQGLGLNKRQRIVSFLFLVILPYVEAKLDEIYEKLR---------ENNEF----SS----------D--E------- 144 (357)
T ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcccc----cC----------c--h-------
Confidence 23333456889999999999999999988654211 00000 00 0 0
Q ss_pred HHHHHHHhhhHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhcc-ccchhhhhhcCceEEeecCC-------------C
Q 017241 165 VSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEG-LYYHISKRTAGIRYVFIGKP-------------T 230 (375)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~lhl~lFy~~G-~Yy~l~kRi~giryv~~~~~-------------~ 230 (375)
..|++ .. ..+. .+.|+++..+....+++.+.|...= .--+..-++.|+.|-+.++. .
T Consensus 145 -~~~~~-~~---~aF~----~~~p~i~~a~els~lvq~l~yIlkrs~~hSPll~lsgv~L~~lt~~dl~a~~~gp~e~~~ 215 (357)
T KOG0826|consen 145 -TENKR-PK---RAFL----RIYPFIKMALELSKLVQQLRYILKRSSHHSPLLYLSGVQLGTLTPEDLQALEHGPAELSM 215 (357)
T ss_pred -hhhhh-HH---HHHh----hhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHhhcccccccHHHHHHhhccccccch
Confidence 01111 01 1111 2346666677766666655544321 11245568888888765541 1
Q ss_pred CCChhH---------HHHH---------------HHHHHHHHHHHhhchhccccccccccccccccccccccCCCCCccc
Q 017241 231 NQRPRY---------QILG---------------VFLLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVL 286 (375)
Q Consensus 231 ~~~~sy---------~~Lg---------------~lll~ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (375)
...+.+ .+.| .+.+..++++++.|+. .+....+.. +.+
T Consensus 216 ~~q~~r~t~~e~i~l~~qgaL~~~~~~v~~~~stgl~~~vFflqfldWWy-------ssd~~~~~k-----------~~l 277 (357)
T KOG0826|consen 216 MDQPARKTVSEKIFLLMQGALKKAVRGVAFSLSTGLSVGVFFLQFLDWWY-------SSDNQRKIK-----------STL 277 (357)
T ss_pred hhhhhhhhhhhhHHHHHHhHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHh-------cchHHHhhc-----------cCC
Confidence 111111 1111 1222233333433332 211111100 001
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcccCCCCCCccccccCCCCCCCeeeC-CCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 287 NEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
+++ + +..+ . .+-. .+.+....+...|++|+....+|+++. .|.+|||.|+..++.+...||+...+...+
T Consensus 278 ~~p---~---PpPP-h-~~~~-se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 278 DPP---I---PPPP-H-KQYN-SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVD 348 (357)
T ss_pred CCC---C---CcCC-h-hhcc-cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHH
Confidence 111 0 0000 0 0000 111123456789999999999998775 699999999999999999999999999988
Q ss_pred CceeccC
Q 017241 366 SLVCLYH 372 (375)
Q Consensus 366 ~~~~l~~ 372 (375)
+++.+|+
T Consensus 349 ~l~rl~~ 355 (357)
T KOG0826|consen 349 HLIRLFN 355 (357)
T ss_pred HHHHHhc
Confidence 9988886
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.7e-13 Score=122.52 Aligned_cols=58 Identities=40% Similarity=1.077 Sum_probs=53.4
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc---CCCCCCccCCCCCCCceeccC
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE---KPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
....+.|.||++..++|+.+.|||.|||-||.+|+.. ...||+|+..+..++++|||.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3568999999999999999999999999999999973 468999999999999999994
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.35 E-value=7.6e-13 Score=116.43 Aligned_cols=57 Identities=42% Similarity=1.152 Sum_probs=51.6
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh----------------cCCCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----------------EKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------------~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.++..|+||++.+.+|+.++|||.|||.||..|+. ....||.|+..+...+++|||.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45789999999999999999999999999999974 1358999999999999999985
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.7e-12 Score=107.67 Aligned_cols=56 Identities=41% Similarity=0.961 Sum_probs=51.3
Q ss_pred CCCccccccCCCCCC--CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQD--PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
...+.|+||++.... |+.+.|||+||..||+..++....||.|++.++.+++++||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 456999999998764 67799999999999999999999999999999999999997
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=1e-10 Score=85.57 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
..|+||.+.+.+|+.++|||+||..||..|++.+..||.|++++..++++++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 57999999999999999999999999999998888999999999989998864
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=5.2e-10 Score=75.01 Aligned_cols=38 Identities=42% Similarity=1.098 Sum_probs=30.4
Q ss_pred ccccCCCCCCCeeeCCCCccchhhHHHHHhcC----CCCCCc
Q 017241 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK----PECPLC 358 (375)
Q Consensus 321 C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~C 358 (375)
|+||++.+.+|+.++|||+||..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998643 479987
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.92 E-value=4.8e-10 Score=74.08 Aligned_cols=38 Identities=47% Similarity=1.344 Sum_probs=33.8
Q ss_pred ccccCCCCCCC-eeeCCCCccchhhHHHHHhcCCCCCCc
Q 017241 321 CTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLC 358 (375)
Q Consensus 321 C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~C 358 (375)
|+||++.+.+| +.++|||+||+.|+..|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 679999999999999999888899987
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.90 E-value=7.4e-10 Score=77.34 Aligned_cols=46 Identities=39% Similarity=1.023 Sum_probs=41.4
Q ss_pred CccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
+..|.||++...+++..||||. ||..|+..|.+....||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999999999999999999 999999999999999999999875
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.88 E-value=5.3e-10 Score=75.88 Aligned_cols=40 Identities=43% Similarity=1.137 Sum_probs=34.9
Q ss_pred cccccCCCCC---CCeeeCCCCccchhhHHHHHhcCCCCCCcc
Q 017241 320 KCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCR 359 (375)
Q Consensus 320 ~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 359 (375)
.|+||++.+. ..+.++|||.||..|+.+|++.+..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999874 456789999999999999999899999996
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.86 E-value=1.6e-09 Score=99.38 Aligned_cols=48 Identities=38% Similarity=0.968 Sum_probs=41.3
Q ss_pred CCCccccccCCCCCCC--------eeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDP--------TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p--------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
..+..|+||++.+.++ +.++|||.||..||.+|.+.+..||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3467999999986643 45689999999999999999999999999876
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=2.1e-09 Score=105.56 Aligned_cols=57 Identities=33% Similarity=0.672 Sum_probs=49.9
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
.......|+||.+.+.+|+.++|||.||..||..|+.....||.|+..+....+.+.
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N 78 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSN 78 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccc
Confidence 345678999999999999999999999999999999888899999999887666543
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-09 Score=106.72 Aligned_cols=55 Identities=36% Similarity=0.881 Sum_probs=50.0
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-----CCCCCccCCCCCCCceeccC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-----PECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~~l~~ 372 (375)
+..||||++...-|..|.|||+||+.||.+++... ..||+|+..+..+++.|++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 78999999999999999999999999999987532 58999999999999999875
No 17
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.80 E-value=2.2e-09 Score=81.07 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=46.4
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc-CCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~l~ 371 (375)
++.+.|+||.+.+.+|+.++|||+|+..||..|+.. ...||.|++++...+++|..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 357899999999999999999999999999999987 78999999999999998864
No 18
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.69 E-value=3.7e-09 Score=98.99 Aligned_cols=54 Identities=35% Similarity=0.811 Sum_probs=50.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCcee
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 369 (375)
..-..|.||.+.+..|+.+||+|.||.-||..++..++.||.|+.++++.++..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRN 74 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhh
Confidence 456899999999999999999999999999999999999999999999887753
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=1.4e-08 Score=90.48 Aligned_cols=54 Identities=24% Similarity=0.733 Sum_probs=41.2
Q ss_pred CCCCccccccCCCCCC---------CeeeCCCCccchhhHHHHHhcC------CCCCCccCCCCCCCceec
Q 017241 315 APGVSKCTLCLSNRQD---------PTATPCGHVFCWNCIMEWCNEK------PECPLCRAPITHSSLVCL 370 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~l 370 (375)
.+.+..|+||+|...+ +...+|+|.||..||..|.+.+ ..||.||..+. .+.|.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 3457899999997532 3456899999999999999743 35999999876 44443
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.65 E-value=7.6e-09 Score=95.06 Aligned_cols=52 Identities=35% Similarity=0.775 Sum_probs=46.9
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
.....|-||.+.+..|..++|||.||+.||..++.+++.||+||++..+..+
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 3467999999999999999999999999999999999999999998765544
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.65 E-value=1.3e-08 Score=67.86 Aligned_cols=38 Identities=45% Similarity=1.296 Sum_probs=34.9
Q ss_pred ccccCCCCCCCe-eeCCCCccchhhHHHHHh--cCCCCCCc
Q 017241 321 CTLCLSNRQDPT-ATPCGHVFCWNCIMEWCN--EKPECPLC 358 (375)
Q Consensus 321 C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~C 358 (375)
|+||.+.+.++. .++|||.||..|+..|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 889999999999999998 55789987
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=3.1e-08 Score=66.52 Aligned_cols=43 Identities=49% Similarity=1.267 Sum_probs=37.0
Q ss_pred cccccCCCCCCCeeeC-CCCccchhhHHHHHhc-CCCCCCccCCC
Q 017241 320 KCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE-KPECPLCRAPI 362 (375)
Q Consensus 320 ~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 362 (375)
.|+||.+.+.++..++ |||.||..|+..|.+. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999987776665 9999999999999986 67899998753
No 23
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.9e-08 Score=102.63 Aligned_cols=55 Identities=29% Similarity=0.730 Sum_probs=50.4
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHh-cCCCCCCccCCCCCCCceecc
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.-..|++|...+++.+.+.|||+||..|+..... ....||.|...|...+++|||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 5689999999999999999999999999999886 457999999999999999997
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.51 E-value=1e-07 Score=61.78 Aligned_cols=38 Identities=45% Similarity=1.330 Sum_probs=34.5
Q ss_pred ccccCCCCCCCeeeCCCCccchhhHHHHHh-cCCCCCCc
Q 017241 321 CTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLC 358 (375)
Q Consensus 321 C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C 358 (375)
|+||++...+++.++|||.||..|+..|.+ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988899999999999999999998 55679987
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.6e-08 Score=91.79 Aligned_cols=49 Identities=31% Similarity=0.975 Sum_probs=42.4
Q ss_pred CCCCCccccccCCCCCC-------------CeeeCCCCccchhhHHHHHhcCCCCCCccCCC
Q 017241 314 AAPGVSKCTLCLSNRQD-------------PTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~-------------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 362 (375)
...++..|.||++.+.. |..+||||.++..|++.|++....||.||.++
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34578899999998432 46789999999999999999999999999984
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.44 E-value=9.8e-08 Score=64.09 Aligned_cols=35 Identities=37% Similarity=1.086 Sum_probs=22.1
Q ss_pred ccccCCCCCC----CeeeCCCCccchhhHHHHHhc----CCCCC
Q 017241 321 CTLCLSNRQD----PTATPCGHVFCWNCIMEWCNE----KPECP 356 (375)
Q Consensus 321 C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~----~~~CP 356 (375)
|+||.+ +.+ |+.++|||+||..|+..+.+. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 776 899999999999999999873 34676
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.42 E-value=1.6e-07 Score=63.62 Aligned_cols=41 Identities=34% Similarity=1.056 Sum_probs=34.9
Q ss_pred cccccCCCC---CCCeeeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 320 KCTLCLSNR---QDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 320 ~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
.|++|.+.+ ..+..++|||+||..|+.........||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 24678899999999999998866679999975
No 28
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.41 E-value=1.7e-07 Score=70.80 Aligned_cols=40 Identities=43% Similarity=1.222 Sum_probs=33.1
Q ss_pred cccccCCCCCCC-------------eeeCCCCccchhhHHHHHhcCCCCCCcc
Q 017241 320 KCTLCLSNRQDP-------------TATPCGHVFCWNCIMEWCNEKPECPLCR 359 (375)
Q Consensus 320 ~C~iC~~~~~~p-------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 359 (375)
.|+||++.+.++ ...+|||.|+..||..|++....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999988332 2347999999999999999999999997
No 29
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.25 E-value=2.7e-07 Score=66.41 Aligned_cols=51 Identities=27% Similarity=0.811 Sum_probs=26.7
Q ss_pred CccccccCCCCCCCee-eCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 318 VSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
...|.+|.+.+.+|+. ..|.|+||+.||..-+. ..||+|..+...++++-.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence 4789999999999986 57999999999976433 469999999988887643
No 30
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.9e-07 Score=85.50 Aligned_cols=46 Identities=33% Similarity=0.877 Sum_probs=39.3
Q ss_pred ccccccCCCCCCC---eeeCCCCccchhhHHHHHhcC-CCCCCccCCCCC
Q 017241 319 SKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEK-PECPLCRAPITH 364 (375)
Q Consensus 319 ~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 364 (375)
..|+||+|.++.. ..+||+|.|+..||+.|+.+. ..||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5999999999864 468999999999999999766 569999887653
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-06 Score=81.73 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=41.7
Q ss_pred CCCccccccCCCCCC---CeeeCCCCccchhhHHHHHh-cCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 364 (375)
....+|+||++.+.. -+++||.|.|+..|+..|+. -+..||.||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 345899999998864 36789999999999999997 56799999998874
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=2.3e-06 Score=81.02 Aligned_cols=54 Identities=22% Similarity=0.652 Sum_probs=41.2
Q ss_pred CccccccCCC-CCCCe----eeCCCCccchhhHHHHH-hcCCCCCCccCCCCCCCceecc
Q 017241 318 VSKCTLCLSN-RQDPT----ATPCGHVFCWNCIMEWC-NEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 318 ~~~C~iC~~~-~~~p~----~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
+..||+|... ..+|. ..+|||.||..|+...+ .....||.|+.++....+.+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 4689999984 23442 22799999999999965 4556899999999888766543
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.3e-07 Score=62.21 Aligned_cols=52 Identities=33% Similarity=0.863 Sum_probs=42.8
Q ss_pred CccccccCCCCCCCeeeCCCCc-cchhhHHHHHh-cCCCCCCccCCCCCCCceecc
Q 017241 318 VSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCN-EKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
+.+|.||.+.+.+.+.-.|||. .|+.|-.+..+ .+..||+||+++. +++.-|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHHhh
Confidence 4689999999999888899997 99999988666 6679999999875 444433
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-06 Score=89.85 Aligned_cols=52 Identities=31% Similarity=0.827 Sum_probs=45.2
Q ss_pred CCCccccccCCCCCC-----CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQD-----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
.....|+||.+.+.. |..++|||+||..|+..|++....||.||..+.....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 457899999999988 7899999999999999999999999999995544433
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-06 Score=79.06 Aligned_cols=50 Identities=28% Similarity=0.673 Sum_probs=43.2
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCCCCc
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSL 367 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 367 (375)
...|+||+.....|+.++|+|.||+-||+...... ..|++||.+++..-+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 46899999999999999999999999999877655 569999999976443
No 36
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=1.4e-06 Score=80.63 Aligned_cols=87 Identities=26% Similarity=0.510 Sum_probs=57.7
Q ss_pred CcccCCCCCCCCCCCCCCCccccCCC-------Ccc---cCCCCCCccccccCCCCCCCeeeC-CCCccchhhHHHHHh-
Q 017241 283 LPVLNEEGSLIPSESDKGGWVLDSTS-------TSE---SQAAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCN- 350 (375)
Q Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~- 350 (375)
..+++++|+.+...++.+.|..-... +++ -....-...|++|...+.+|+.++ |+|.||..||...+.
T Consensus 229 ~imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d 308 (427)
T COG5222 229 AIMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD 308 (427)
T ss_pred ceEEcCCCCeEEeccchHHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhh
Confidence 34677778777777777776521110 010 001122489999999999999996 899999999987664
Q ss_pred cCCCCCCccC-CCCCCCcee
Q 017241 351 EKPECPLCRA-PITHSSLVC 369 (375)
Q Consensus 351 ~~~~CP~Cr~-~~~~~~~~~ 369 (375)
..+.||.|.. .+-...+.|
T Consensus 309 sDf~CpnC~rkdvlld~l~p 328 (427)
T COG5222 309 SDFKCPNCSRKDVLLDGLTP 328 (427)
T ss_pred ccccCCCcccccchhhccCc
Confidence 6689999954 333334433
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.4e-06 Score=79.80 Aligned_cols=48 Identities=33% Similarity=0.892 Sum_probs=43.6
Q ss_pred CCCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
+...+|.||++..++.+.+||.|. .|..|.+...-....||+||+++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 457899999999999999999997 899999887767889999999986
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4e-06 Score=79.34 Aligned_cols=45 Identities=33% Similarity=0.893 Sum_probs=40.6
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
.+...|+||++.+..|..++|||.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 467899999999999988999999999999998875579999993
No 39
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.80 E-value=8.6e-06 Score=71.31 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=42.5
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
-.+.|.||.+.+..|+++.|||.||..|...-.+....|-.|.+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 35899999999999999999999999999988888899999987653
No 40
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.80 E-value=1.7e-05 Score=60.79 Aligned_cols=30 Identities=40% Similarity=1.121 Sum_probs=26.1
Q ss_pred CCCCccchhhHHHHHhc---CCCCCCccCCCCC
Q 017241 335 PCGHVFCWNCIMEWCNE---KPECPLCRAPITH 364 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~ 364 (375)
.|+|.|+..||..|+.. +..||.||++...
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 59999999999999974 4799999998654
No 41
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.8e-05 Score=78.09 Aligned_cols=50 Identities=34% Similarity=0.862 Sum_probs=45.4
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
...++.|.||...+.+|+.+||||.||..||.+-+.....||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 35789999999999999999999999999999977788999999998764
No 42
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=9.4e-05 Score=73.09 Aligned_cols=49 Identities=31% Similarity=0.938 Sum_probs=39.4
Q ss_pred CCCccccccCCCCC-----------------CCeeeCCCCccchhhHHHHHhc-CCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQ-----------------DPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~-----------------~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 364 (375)
.....|+||+..+. +-+.+||.|+|+..|+.+|... +-.||.||.++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45679999998643 1235699999999999999984 4599999998863
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=4.1e-06 Score=79.53 Aligned_cols=49 Identities=33% Similarity=0.719 Sum_probs=41.5
Q ss_pred CCCccccccCCCCCCCeeeC-CCCccchhhHHHHHh-cCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCN-EKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 364 (375)
..+..|+||++.++..+.++ |+|.||..||...++ ....||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45789999999998877665 999999999988776 56899999998753
No 44
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1e-05 Score=74.07 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=42.1
Q ss_pred CCCccccccCCCCC----------CCeeeCCCCccchhhHHHHHh--cCCCCCCccCCCCCCCce
Q 017241 316 PGVSKCTLCLSNRQ----------DPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSLV 368 (375)
Q Consensus 316 ~~~~~C~iC~~~~~----------~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 368 (375)
.++..|++|...+. +...++|+|+|+..||..|+- .++.||.|++.+..+.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 34678999987643 345789999999999999986 557999999988765543
No 45
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=5.9e-05 Score=68.35 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=50.8
Q ss_pred CCCccccccCCCCCCCe----eeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
+..+.|++|.+.+.|.+ .-||||++|+.|....++....||+|..++.+.+|++|-.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQR 279 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeec
Confidence 46899999999998753 3489999999999999999999999999999999999853
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.52 E-value=4e-05 Score=73.80 Aligned_cols=54 Identities=33% Similarity=0.901 Sum_probs=44.2
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHh--cCCCCCCccCCCCCCCceecc
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
-..|.||.+.-++-..-||||..|..|+..|.. +...||.||..+.-.+-+-|+
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid 424 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIID 424 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeee
Confidence 347999999888888889999999999999985 468999999988755444443
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.45 E-value=6.5e-05 Score=74.79 Aligned_cols=55 Identities=33% Similarity=0.790 Sum_probs=48.9
Q ss_pred CCCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCcee
Q 017241 315 APGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 369 (375)
..++..|++|...+.+|+.+ .|||.||..|+..|...+..||.|+..+...+.++
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 35679999999999999995 99999999999999999999999998888766655
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=4.9e-05 Score=70.73 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=42.6
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
-.+.|-||...+.+|+++.|||.||..|.....+....|++|.+...
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 45789999999999999999999999999888888899999987664
No 49
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.33 E-value=0.0001 Score=73.32 Aligned_cols=52 Identities=29% Similarity=0.741 Sum_probs=44.4
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHh-----cCCCCCCccCCCCCC
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-----EKPECPLCRAPITHS 365 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 365 (375)
+..+...|.+|.++-.+++.+.|.|.||..|+.+++. .+..||.|...+...
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456789999999999999999999999999999875 346999998877654
No 50
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.26 E-value=0.00031 Score=66.21 Aligned_cols=57 Identities=25% Similarity=0.505 Sum_probs=46.7
Q ss_pred CCCCccccccCCCCCCC----eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 315 APGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
....+.|||+...+..- ...+|||+|++.|+.+.- ....||.|..++...+|++|--
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 35679999999988542 234999999999999874 4568999999999999999853
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00014 Score=69.07 Aligned_cols=48 Identities=21% Similarity=0.658 Sum_probs=44.4
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.++..|+||.....+.+..||+|.-|+.||.+++.+.+.|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 578899999999999999999999999999999999999999987765
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.19 E-value=0.00017 Score=51.54 Aligned_cols=41 Identities=29% Similarity=0.669 Sum_probs=29.6
Q ss_pred CCccccccCCCCCCCeee-CCCCccchhhHHHHHh--cCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN--EKPECPL 357 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~--~~~~CP~ 357 (375)
....|||.+..+.+|+.. .|||+|....|.++++ ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999999999875 7999999999999994 3468998
No 53
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=3.9e-05 Score=71.12 Aligned_cols=49 Identities=31% Similarity=0.771 Sum_probs=40.0
Q ss_pred CccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
...|.||++.+.+-+.++|||. -|..|-+.. ..||+||+.+. +++.||+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~--rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIV--RVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHH--HHHhhhc
Confidence 7899999999999999999994 899997643 49999998765 4445543
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.10 E-value=0.00014 Score=68.83 Aligned_cols=50 Identities=32% Similarity=0.677 Sum_probs=43.3
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
..-..|.+|...+.+++.+ -|-|.||..||..++.....||.|...+...
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3467999999999998665 5999999999999999999999998877743
No 55
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.03 E-value=0.00047 Score=51.65 Aligned_cols=29 Identities=38% Similarity=0.814 Sum_probs=26.8
Q ss_pred CCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 335 PCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.|.|.|+..||.+|+..+..||+++++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 49999999999999999999999998764
No 56
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00037 Score=66.90 Aligned_cols=47 Identities=36% Similarity=0.940 Sum_probs=36.6
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
+.+....|.||.+...+.+.+||||+.| |..-. +..+.||+||+.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3456779999999999999999999866 65432 23456999999775
No 57
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00044 Score=67.10 Aligned_cols=54 Identities=31% Similarity=0.774 Sum_probs=44.7
Q ss_pred CccccccCCCCCCC-----eeeCCCCccchhhHHHHHh--cCCCCCCccCCCCCCCceecc
Q 017241 318 VSKCTLCLSNRQDP-----TATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 318 ~~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
...|+||++....+ +.+.|||.|...||..|+- ....||.|....+..+|+|+|
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 46899999987754 2357999999999999995 236999999888888888876
No 58
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00074 Score=65.51 Aligned_cols=48 Identities=31% Similarity=0.962 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCCCe-----e---eCCCCccchhhHHHHHh--c-----CCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPT-----A---TPCGHVFCWNCIMEWCN--E-----KPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~-----~---~~CgH~fC~~Ci~~~~~--~-----~~~CP~Cr~~~~ 363 (375)
..+..|.||++...... . .+|.|.||..||..|-. . .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56789999999876654 2 56999999999999983 3 479999987643
No 59
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.65 E-value=0.0004 Score=51.90 Aligned_cols=47 Identities=38% Similarity=0.929 Sum_probs=23.2
Q ss_pred CccccccCCCCC-C---Ce--e--eCCCCccchhhHHHHHhc---C--------CCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQ-D---PT--A--TPCGHVFCWNCIMEWCNE---K--------PECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~-~---p~--~--~~CgH~fC~~Ci~~~~~~---~--------~~CP~Cr~~~~~ 364 (375)
+..|.||.+... + |. . ..|++.|+..|+.+|+.. . ..||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998754 2 22 2 269999999999999862 1 169999988753
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.53 E-value=0.00069 Score=71.72 Aligned_cols=48 Identities=31% Similarity=0.858 Sum_probs=38.2
Q ss_pred CCCccccccCCCCC-------CCeeeCCCCccchhhHHHHHh--cCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQ-------DPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~-------~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 363 (375)
+.-.+|+||...+. +..+..|.|-|+-.|+..|.+ .+..||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45679999987543 235667999999999999997 4579999997664
No 61
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.44 E-value=0.0027 Score=43.88 Aligned_cols=40 Identities=30% Similarity=0.934 Sum_probs=31.6
Q ss_pred cccccCC--CCCCCeeeCCC-----CccchhhHHHHHhc--CCCCCCcc
Q 017241 320 KCTLCLS--NRQDPTATPCG-----HVFCWNCIMEWCNE--KPECPLCR 359 (375)
Q Consensus 320 ~C~iC~~--~~~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr 359 (375)
.|.||++ ...++...||. |.++..|+..|+.. +..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 44567788985 77999999999964 45899994
No 62
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.38 E-value=0.00063 Score=70.74 Aligned_cols=49 Identities=24% Similarity=0.610 Sum_probs=40.2
Q ss_pred CCCccccccCCCCCCC---eeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.....|++|+....+. ...+|+|.||..|+..|.+....||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4567899998765442 345799999999999999999999999988764
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.25 E-value=0.0024 Score=62.81 Aligned_cols=47 Identities=28% Similarity=0.822 Sum_probs=37.5
Q ss_pred CCCCccccccCCCCCCC----eeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 315 APGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
..+-..||+|+|.+-.. ..+.|.|.|+-.|+..|.. ..||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 35677999999988653 3467999999999999864 67999987655
No 64
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.11 E-value=0.0035 Score=43.91 Aligned_cols=49 Identities=29% Similarity=0.656 Sum_probs=38.6
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
....|..|...-...+..||||..|..|...+ .-..||.|..++...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 34578888888788889999999999997532 33689999999876553
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.003 Score=61.01 Aligned_cols=51 Identities=24% Similarity=0.873 Sum_probs=35.6
Q ss_pred CccccccCCCCCCC---eee-CCCCccchhhHHHHHhcC---CCCCCccCCCCCCCce
Q 017241 318 VSKCTLCLSNRQDP---TAT-PCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLV 368 (375)
Q Consensus 318 ~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~ 368 (375)
...|.||.+-+.+. ..+ .|||+|+..|+..|.... ..||.|+-.+....+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 35899995433221 123 499999999999999744 4899998555554443
No 66
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0037 Score=49.26 Aligned_cols=27 Identities=33% Similarity=0.910 Sum_probs=25.2
Q ss_pred CCCCccchhhHHHHHhcCCCCCCccCC
Q 017241 335 PCGHVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
.|.|.|+..||.+|++.+..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 499999999999999999999999765
No 67
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0031 Score=46.95 Aligned_cols=30 Identities=37% Similarity=0.969 Sum_probs=25.2
Q ss_pred CCCCccchhhHHHHHh---cCCCCCCccCCCCC
Q 017241 335 PCGHVFCWNCIMEWCN---EKPECPLCRAPITH 364 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~ 364 (375)
-|.|.|+..||..|+. ....||.||+....
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3999999999999996 33689999997653
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.0037 Score=57.09 Aligned_cols=51 Identities=33% Similarity=0.688 Sum_probs=34.7
Q ss_pred ccccccCCCCC-CC-eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 319 SKCTLCLSNRQ-DP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 319 ~~C~iC~~~~~-~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
..|-.|..-.. +| ..+.|+|+||..|...- ....||+|++++...++.+-+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~~sl 56 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLNRSL 56 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeeeeccccc
Confidence 35666665333 34 35789999999997532 223999999998766665544
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.24 E-value=0.0044 Score=65.66 Aligned_cols=48 Identities=31% Similarity=0.765 Sum_probs=39.9
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhc--CCCCCCccCCCCCCCc
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE--KPECPLCRAPITHSSL 367 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~ 367 (375)
..|.+|.+ ...++.++|||.||..|+...+.. ...||.|+..+..+++
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 778889999999999999987753 3479999887765544
No 70
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.015 Score=52.35 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=36.1
Q ss_pred CccccccCCCCC--CCeeeCCCCccchhhHHHHHhc--------CCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNE--------KPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 363 (375)
...|.+|...+. +.+.+.|-|+|+|.|+.+|..+ ...||.|..++-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 347889988766 4577889999999999999752 248999977653
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.21 E-value=0.017 Score=55.20 Aligned_cols=48 Identities=27% Similarity=0.735 Sum_probs=39.8
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHH--HhcCCCCCCccCC
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEW--CNEKPECPLCRAP 361 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~--~~~~~~CP~Cr~~ 361 (375)
..++.-.|.||.+..+-...+||+|..|.-|..+. +...+.||+||..
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 34567899999998887888999999999998663 4477899999864
No 72
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.018 Score=54.24 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=31.8
Q ss_pred CccccccCCCCCC-CeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
-..|.-|--.+.. ...+||.|+||++|... ...+.||.|...+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 4567778665443 45679999999999743 34679999976654
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.55 E-value=0.024 Score=54.00 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=34.9
Q ss_pred ccccccCCCCCCC----eeeCCCCccchhhHHHHHh-cCCCCCCccCCCCCCCce
Q 017241 319 SKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLV 368 (375)
Q Consensus 319 ~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 368 (375)
.-|++|++++... .--+||...|..|....-+ -...||.||+...++.++
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 3499999987532 2247898777777655433 236899999988877664
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.38 E-value=0.026 Score=38.59 Aligned_cols=42 Identities=31% Similarity=0.742 Sum_probs=20.9
Q ss_pred ccccCCCCCC--Ceee--CCCCccchhhHHHHHh-cCCCCCCccCCC
Q 017241 321 CTLCLSNRQD--PTAT--PCGHVFCWNCIMEWCN-EKPECPLCRAPI 362 (375)
Q Consensus 321 C~iC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~ 362 (375)
|++|.+.+.. .... +||+..|..|...... ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887632 2233 5899999999988876 578999999864
No 75
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.052 Score=53.04 Aligned_cols=56 Identities=23% Similarity=0.423 Sum_probs=43.1
Q ss_pred CCCccccccCCCCC---CCeeeCCCCccchhhHHHHHhcC---CCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 371 (375)
..-+.|||=.+.-. .|+.+.|||+.|.+-+....++. +.||.|-.....++...||
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 35689998554332 48899999999999999887643 6999998777777766665
No 76
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.32 E-value=0.037 Score=44.32 Aligned_cols=31 Identities=32% Similarity=0.800 Sum_probs=25.3
Q ss_pred CCCccccccCCCCCCCe--eeCCCCccchhhHH
Q 017241 316 PGVSKCTLCLSNRQDPT--ATPCGHVFCWNCIM 346 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~--~~~CgH~fC~~Ci~ 346 (375)
+++..|++|...+.+.. ..||||+||+.|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44678999999888754 45999999999974
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.059 Score=52.81 Aligned_cols=34 Identities=26% Similarity=0.841 Sum_probs=27.7
Q ss_pred CCccccccCCCCCC---CeeeCCCCccchhhHHHHHh
Q 017241 317 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCN 350 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~ 350 (375)
..+.|.||.+...- -..+||+|+||..|++.+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 46899999997543 24579999999999999864
No 78
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.63 E-value=0.067 Score=52.65 Aligned_cols=35 Identities=29% Similarity=0.600 Sum_probs=31.3
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN 350 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 350 (375)
+++.+|+||..-+.+|+.+||+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 35789999999999999999999999999987654
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.41 E-value=0.11 Score=43.20 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=39.9
Q ss_pred CCccccccCCCCCCCeee----CCCCccchhhHHHHHh---cCCCCCCccCCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTAT----PCGHVFCWNCIMEWCN---EKPECPLCRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 366 (375)
.-.+|.||.|.-.+...+ -||...|..|-...++ ..+.||.|+.++..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 468999999987776665 2999999999988554 4589999999887543
No 80
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.26 E-value=0.043 Score=53.30 Aligned_cols=44 Identities=32% Similarity=0.696 Sum_probs=35.1
Q ss_pred CCccccccCCCCC----CCeeeCCCCccchhhHHHHHhcC--CCCCCccC
Q 017241 317 GVSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEK--PECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 360 (375)
-+.-|..|.+.+- +--.+||.|+|+..|+.+.+.++ ..||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4678999988653 23468999999999999998643 59999983
No 81
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.11 Score=49.74 Aligned_cols=44 Identities=30% Similarity=0.801 Sum_probs=35.6
Q ss_pred ccccccCCCCC------CCeeeCCCCccchhhHHHHHhcC-CCCCCccCCC
Q 017241 319 SKCTLCLSNRQ------DPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPI 362 (375)
Q Consensus 319 ~~C~iC~~~~~------~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 362 (375)
..|-||-+.+. .|..+.|||.+|..|+....... -.||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57888988765 36777899999999998877644 5899999984
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.14 Score=44.55 Aligned_cols=48 Identities=31% Similarity=0.825 Sum_probs=34.9
Q ss_pred CCccccccCCCCCCC-----ee--eCCCCccchhhHHHHHhc------C-----CCCCCccCCCCC
Q 017241 317 GVSKCTLCLSNRQDP-----TA--TPCGHVFCWNCIMEWCNE------K-----PECPLCRAPITH 364 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-----~~--~~CgH~fC~~Ci~~~~~~------~-----~~CP~Cr~~~~~ 364 (375)
....|.||...--+. ++ ..||..|+.-|+..|++. . .+||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 345788887643322 22 479999999999999972 1 289999988764
No 83
>PHA03096 p28-like protein; Provisional
Probab=91.06 E-value=0.11 Score=49.32 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=30.2
Q ss_pred ccccccCCCCCC--------CeeeCCCCccchhhHHHHHhcC---CCCCCccC
Q 017241 319 SKCTLCLSNRQD--------PTATPCGHVFCWNCIMEWCNEK---PECPLCRA 360 (375)
Q Consensus 319 ~~C~iC~~~~~~--------p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~ 360 (375)
..|.||++.... .....|.|.||..|+..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 689999996543 2334799999999999998633 34555544
No 84
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=0.17 Score=46.36 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=29.8
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHH
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~ 349 (375)
+-..|.+|+.+..+|++++-||+||..||.+++
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 455789999999999999999999999998865
No 85
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.09 E-value=0.34 Score=41.65 Aligned_cols=50 Identities=20% Similarity=0.568 Sum_probs=35.0
Q ss_pred CccccccCCCCCCCeeeCC------------CCc-cchhhHHHHHhc-------------------------------CC
Q 017241 318 VSKCTLCLSNRQDPTATPC------------GHV-FCWNCIMEWCNE-------------------------------KP 353 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~C------------gH~-fC~~Ci~~~~~~-------------------------------~~ 353 (375)
+..|+||++.+.+.+.+-| +.. -+..|++++.+. ..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 5689999999999887633 322 246788876540 12
Q ss_pred CCCCccCCCCCCCc
Q 017241 354 ECPLCRAPITHSSL 367 (375)
Q Consensus 354 ~CP~Cr~~~~~~~~ 367 (375)
.||+||-.+....+
T Consensus 82 ~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 82 ACPLCRGEVKGWTV 95 (162)
T ss_pred cCccccCceeceEE
Confidence 69999998875544
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=0.16 Score=54.06 Aligned_cols=41 Identities=32% Similarity=0.759 Sum_probs=34.3
Q ss_pred CCccccccCCCCCCCe-eeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
...+|..|...+.-|+ .-.|||.|+..|+. .....||.|+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 3479999999988885 46899999999997 45579999976
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=0.16 Score=54.33 Aligned_cols=34 Identities=26% Similarity=0.618 Sum_probs=26.9
Q ss_pred CCCccccccCCCCCC-C-eeeCCCCccchhhHHHHH
Q 017241 316 PGVSKCTLCLSNRQD-P-TATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~-p-~~~~CgH~fC~~Ci~~~~ 349 (375)
.....|.+|...+.. | ..-||||.|++.|+....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 456799999987653 4 456999999999998765
No 88
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=89.15 E-value=0.47 Score=40.80 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=35.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCc-----cchhhHHHHHhc--CCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNE--KPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~--~~~CP~Cr~~~~ 363 (375)
..+..|-||.+... +...||... .+..|+..|+.. ...|+.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45679999998754 334576543 489999999974 469999988765
No 89
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=0.39 Score=44.26 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCccccccCCCCCCC----eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
...+.|+|-.-+|... ...+|||+|-..-+.+.- ...|+.|.+.+...++++|=
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeC
Confidence 4568999876666543 346899999998887643 57899999999999998763
No 90
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.93 E-value=0.11 Score=48.81 Aligned_cols=47 Identities=30% Similarity=0.750 Sum_probs=35.3
Q ss_pred CCccccccCCCCCC---CeeeCCCCccchhhHHHHHhc-----------------------CCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNE-----------------------KPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 363 (375)
....|.||+--+.+ -+.++|-|-|+..|+.+++.. ...||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 35688888876654 357899999999999886531 127999999875
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.43 E-value=0.45 Score=31.82 Aligned_cols=38 Identities=18% Similarity=0.582 Sum_probs=22.2
Q ss_pred ccccCCCCCCCeee---CCCCccchhhHHHHHhcCC--CCCCc
Q 017241 321 CTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNEKP--ECPLC 358 (375)
Q Consensus 321 C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~--~CP~C 358 (375)
|.+|.+.......= .|+-.++..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788877665543 4888899999999987553 79987
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.35 Score=45.28 Aligned_cols=35 Identities=31% Similarity=0.659 Sum_probs=30.2
Q ss_pred CCCccccccCCCCCCCeeeCC----CCccchhhHHHHHh
Q 017241 316 PGVSKCTLCLSNRQDPTATPC----GHVFCWNCIMEWCN 350 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~C----gH~fC~~Ci~~~~~ 350 (375)
.....|.+|.|.+.+.....| .|-||.-|-.+.++
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 456899999999999888877 68899999988876
No 93
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.36 E-value=0.37 Score=45.73 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=42.0
Q ss_pred CCCccccccCCCCC---CCeeeCCCCccchhhHHHHHhcC---CCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 371 (375)
..-+.||+-.+.-+ .|+.+.|||+.-..-+....+++ +.||.|...-...++..+|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvr 395 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVR 395 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhccc
Confidence 35688998555332 47889999999999988877654 6999997776666666655
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.72 E-value=0.75 Score=45.15 Aligned_cols=34 Identities=29% Similarity=0.820 Sum_probs=25.3
Q ss_pred CCCccchhhHHHHHh-------------cCCCCCCccCCCCCCCcee
Q 017241 336 CGHVFCWNCIMEWCN-------------EKPECPLCRAPITHSSLVC 369 (375)
Q Consensus 336 CgH~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~~~~ 369 (375)
|....|..|+.+|.. .+-.||.||+.+...|+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~ 357 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCY 357 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeec
Confidence 444579999999874 2348999999998776643
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=86.65 E-value=0.28 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.675 Sum_probs=27.6
Q ss_pred CccccccCCCCCC--C-eeeCCC------CccchhhHHHHHhcCC
Q 017241 318 VSKCTLCLSNRQD--P-TATPCG------HVFCWNCIMEWCNEKP 353 (375)
Q Consensus 318 ~~~C~iC~~~~~~--p-~~~~Cg------H~fC~~Ci~~~~~~~~ 353 (375)
..+|.||++.+.+ . +.++|| |.||..|+..|.++..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 6799999998876 3 345666 6799999999965443
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=0.34 Score=44.03 Aligned_cols=39 Identities=33% Similarity=0.781 Sum_probs=31.3
Q ss_pred ccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCC
Q 017241 321 CTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 321 C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
|-.|.+.-..-...||.|+ +|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 9999998777777899996 89999532 467999987654
No 97
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=85.37 E-value=0.54 Score=52.89 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=36.7
Q ss_pred CCCccccccCCCCC---CCeeeCCCCccchhhHHHHHhcC----------CCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK----------PECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~----------~~CP~Cr~~~~~ 364 (375)
..+..|.||..+.- ..+.+.|+|.|+..|....+.++ ..||+|..++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45678999987543 23668999999999998766532 289999887764
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.32 E-value=0.55 Score=32.48 Aligned_cols=42 Identities=26% Similarity=0.726 Sum_probs=21.8
Q ss_pred ccccccCCCCCCCeee-CCCCccchhhHHHHHh-----cCCCCCCccCC
Q 017241 319 SKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAP 361 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~ 361 (375)
..|++....+..|+.. .|.|.-|.+- ..|+. ....||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 6899999999999875 6999988654 34442 33589999764
No 99
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.14 E-value=0.67 Score=44.48 Aligned_cols=46 Identities=28% Similarity=0.695 Sum_probs=36.6
Q ss_pred CCCCccccccCCCCCCCee-eCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 315 APGVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
..+-..||+|.+.+..|+. -+=||.-|..|-. +....||.|+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3467899999999887753 3458999999974 34579999999887
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.65 E-value=0.54 Score=49.56 Aligned_cols=32 Identities=34% Similarity=0.750 Sum_probs=26.7
Q ss_pred eeeCCCCccchhhHHHHHhcCCCCCC-ccCCCC
Q 017241 332 TATPCGHVFCWNCIMEWCNEKPECPL-CRAPIT 363 (375)
Q Consensus 332 ~~~~CgH~fC~~Ci~~~~~~~~~CP~-Cr~~~~ 363 (375)
++..|||+.+.+|..+|++....||. |+..+.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC~C~ 1076 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPSGCGCHCL 1076 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCCCCCcCch
Confidence 35579999999999999999999996 666554
No 101
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.20 E-value=0.61 Score=44.04 Aligned_cols=43 Identities=28% Similarity=0.610 Sum_probs=36.2
Q ss_pred CccccccCCCCC----CCeeeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 318 VSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 318 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
+..||+|.+.+. .+...+|||..+..|.......+..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 445999998764 4667899999999999998877799999977
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.98 E-value=0.24 Score=55.06 Aligned_cols=44 Identities=30% Similarity=0.793 Sum_probs=38.7
Q ss_pred CCccccccCCCCC-CCeeeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQ-DPTATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
....|.+|.+.+. ......|||.+|..|...|...+..||.|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 4559999999888 5677899999999999999999999999963
No 103
>PHA02862 5L protein; Provisional
Probab=82.79 E-value=1.1 Score=38.00 Aligned_cols=44 Identities=30% Similarity=0.712 Sum_probs=32.4
Q ss_pred ccccccCCCCCCCeeeCCCC-----ccchhhHHHHHh--cCCCCCCccCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCGH-----VFCWNCIMEWCN--EKPECPLCRAPIT 363 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 363 (375)
..|-||.+.-.+. .-||.. ..+..|+.+|++ .+..|++|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4788998865333 456653 368999999997 4469999988775
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.72 E-value=0.4 Score=43.79 Aligned_cols=47 Identities=28% Similarity=0.720 Sum_probs=34.3
Q ss_pred CCCccccccCCCCC-CCe----eeC-CCCccchhhHHHHHhcC-CCCC--CccCCC
Q 017241 316 PGVSKCTLCLSNRQ-DPT----ATP-CGHVFCWNCIMEWCNEK-PECP--LCRAPI 362 (375)
Q Consensus 316 ~~~~~C~iC~~~~~-~p~----~~~-CgH~fC~~Ci~~~~~~~-~~CP--~Cr~~~ 362 (375)
..+..||+|..+.- +|- .-| |-|..|-+|+.+.+... ..|| -|.+-+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 34679999998643 442 124 99999999999988755 5899 675533
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.70 E-value=0.46 Score=32.25 Aligned_cols=44 Identities=25% Similarity=0.753 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCeeeCCC-CccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
..|.-|.- .+...+.|. |-.|..|+...+.....||+|.++++.
T Consensus 3 ~nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ccChhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 34555644 345566787 668999999999999999999998864
No 106
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=81.86 E-value=0.8 Score=49.01 Aligned_cols=46 Identities=30% Similarity=0.816 Sum_probs=35.6
Q ss_pred CCCCccccccCCCCCC--C--eeeCCCCccchhhHHHHHhc-------CCCCCCccC
Q 017241 315 APGVSKCTLCLSNRQD--P--TATPCGHVFCWNCIMEWCNE-------KPECPLCRA 360 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~ 360 (375)
....++|.||.+.+.. | ....|=|+|+..||..|.+. ...||.|..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3568999999998763 2 23468899999999999862 248999973
No 107
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.44 E-value=0.33 Score=51.02 Aligned_cols=49 Identities=27% Similarity=0.752 Sum_probs=39.3
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHH---hcCCCCCCccCCCCCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC---NEKPECPLCRAPITHSS 366 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~---~~~~~CP~Cr~~~~~~~ 366 (375)
..+|+||.+....|+.+.|-|.||..|+..-+ .....||+|+..+....
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 57999999999999999999999999986643 23468999986655433
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=0.72 Score=43.39 Aligned_cols=35 Identities=23% Similarity=0.773 Sum_probs=26.7
Q ss_pred CCCccchhhHHHHHh-------------cCCCCCCccCCCCCCCceec
Q 017241 336 CGHVFCWNCIMEWCN-------------EKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 336 CgH~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~~~~l 370 (375)
|....|..|+.+|.. ++-.||.||+.+...++..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 455678899988764 34589999999987777654
No 109
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=79.23 E-value=2 Score=40.91 Aligned_cols=48 Identities=25% Similarity=0.704 Sum_probs=32.4
Q ss_pred CCCccccccCCCCC-----------------CC--eeeCCCCccchhhHHHHHhc---------CCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQ-----------------DP--TATPCGHVFCWNCIMEWCNE---------KPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~-----------------~p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~ 363 (375)
..+.+|++|+..-. .| ...||||+.-..-..-|.+. +..||.|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 45789999976411 11 24599998666666667651 248999988775
No 110
>PRK04023 DNA polymerase II large subunit; Validated
Probab=79.02 E-value=1.5 Score=48.04 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCCCccccccCCCCCCCeeeCCCC-----ccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGH-----VFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
......|+-|........|..||. .||..|-. ......||.|........
T Consensus 623 EVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTPYS 677 (1121)
T ss_pred cccCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCccc
Confidence 346789999998866667778995 49999943 334468999998876543
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=1.1 Score=44.63 Aligned_cols=50 Identities=28% Similarity=0.740 Sum_probs=33.5
Q ss_pred CCccccccC-CCCCC---CeeeCCCCccchhhHHHHHhcC------CCCCC--ccCCCCCCC
Q 017241 317 GVSKCTLCL-SNRQD---PTATPCGHVFCWNCIMEWCNEK------PECPL--CRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~-~~~~~---p~~~~CgH~fC~~Ci~~~~~~~------~~CP~--Cr~~~~~~~ 366 (375)
....|.||. +.+.. -....|+|.||..|+++++..+ ..||. |...++...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 467899999 44332 1245799999999999987622 46764 555554433
No 112
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=75.68 E-value=0.47 Score=45.41 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCCccccccCCCCCCCeeeCC-----CCccchhhHHHHHhcCCCCCCccCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPC-----GHVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
+....||+|.+.+.-.+..+= .|.+|..|-.+|--....||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 446799999997654433332 3678999999998888899999764
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=0.85 Score=47.33 Aligned_cols=38 Identities=29% Similarity=0.788 Sum_probs=29.0
Q ss_pred CCccccccCCCCC----CCeeeCCCCccchhhHHHHHhcCCCCC
Q 017241 317 GVSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEKPECP 356 (375)
Q Consensus 317 ~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP 356 (375)
+-..|.||+..+. .|+.+.|||+.|..|+...- +..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 3468899976554 58889999999999997543 35677
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.54 E-value=2.7 Score=42.76 Aligned_cols=53 Identities=26% Similarity=0.644 Sum_probs=38.1
Q ss_pred CCCccccccCCCCCC-CeeeCCCCccchhhHHHHHhcC--------CCCC--CccCCCCCCCce
Q 017241 316 PGVSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEK--------PECP--LCRAPITHSSLV 368 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~--------~~CP--~Cr~~~~~~~~~ 368 (375)
.....|.||.+.... ...+.|||.||..|+..++..+ ..|| -|.+.+....+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 346799999998775 6667899999999999987522 2455 466666555443
No 115
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=74.50 E-value=1.1 Score=43.12 Aligned_cols=45 Identities=22% Similarity=0.511 Sum_probs=34.0
Q ss_pred CCccccccCCCCCCCeee----CCC--CccchhhHHHHHhcCCCCCCccCC
Q 017241 317 GVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
....||+|.+.+.-.+.. .=| +.+|..|-.+|-.....||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 356999999976543322 233 568999999999889999999764
No 116
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=1.9 Score=40.69 Aligned_cols=31 Identities=26% Similarity=0.756 Sum_probs=25.6
Q ss_pred CCCCccchhhHHHHHh-cCCCCCCccCCCCCC
Q 017241 335 PCGHVFCWNCIMEWCN-EKPECPLCRAPITHS 365 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 365 (375)
+|||..|-.|...... ....||-|...+...
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 8999999999998775 557999997766543
No 117
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=73.63 E-value=2.3 Score=28.97 Aligned_cols=38 Identities=26% Similarity=0.942 Sum_probs=22.9
Q ss_pred ccccCCCCC--CCeeeCCCC-----ccchhhHHHHHh--cCCCCCCc
Q 017241 321 CTLCLSNRQ--DPTATPCGH-----VFCWNCIMEWCN--EKPECPLC 358 (375)
Q Consensus 321 C~iC~~~~~--~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~C 358 (375)
|-||++.-. ++...||+- ..+..|+..|+. ....|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567776433 246677653 468999999997 44678877
No 118
>PF06271 RDD: RDD family; InterPro: IPR010432 This domain contains three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD domain. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands.
Probab=73.57 E-value=12 Score=30.55 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccceEEecCCCCCC
Q 017241 55 TKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLP 92 (375)
Q Consensus 55 i~~~~~llY~~lTt~~g~qTlGEEy~~l~~v~~~~~~~ 92 (375)
+-.+.-+.|+......++||+|.-.++|.-++.++.++
T Consensus 53 ~~~~~~~~~~~~~~~~~G~T~Gk~~~~lrvv~~~g~~~ 90 (137)
T PF06271_consen 53 IFLLVFFYYFIVPWARKGQTLGKRLLGLRVVDKDGNPP 90 (137)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccCceEEEecCCCCC
Confidence 44566777888888889999999999999998665444
No 119
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=72.31 E-value=1.5 Score=42.18 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=33.7
Q ss_pred CCccccccCCCCCCCeee---CCC--CccchhhHHHHHhcCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPTAT---PCG--HVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~---~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
....||+|...+...+.. .=| +.+|..|-.+|-.....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467999999976543321 233 56899999999988899999986
No 120
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=71.17 E-value=3.7 Score=43.98 Aligned_cols=52 Identities=25% Similarity=0.733 Sum_probs=38.5
Q ss_pred CCCccccccCCC--CCCCeeeCCCCc-----cchhhHHHHHh--cCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSN--RQDPTATPCGHV-----FCWNCIMEWCN--EKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~--~~~p~~~~CgH~-----fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 367 (375)
.++..|.||... ..+|..-||.+. .+..|+.+|+. .+..|-+|..+..-+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 345799999764 346777788653 58899999997 44699999887765443
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.63 E-value=3.8 Score=43.53 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=37.4
Q ss_pred CccccccCCCCCCCe--eeCCCCccchhhHHHHHhcCCCCCC--ccCCCCCCCc
Q 017241 318 VSKCTLCLSNRQDPT--ATPCGHVFCWNCIMEWCNEKPECPL--CRAPITHSSL 367 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~~~~ 367 (375)
.-.|++|.-.+..-. +-.|||.-+..|+..|......||. |........+
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~~~~ 832 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHYSSF 832 (839)
T ss_pred hcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcccccccc
Confidence 458888877665332 3359999999999999998888887 7766655444
No 122
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.32 E-value=2.1 Score=42.68 Aligned_cols=42 Identities=29% Similarity=0.730 Sum_probs=30.0
Q ss_pred CCccccccCCCCC-----CCeeeCCCCccchhhHHHHHhcCCCCCCc
Q 017241 317 GVSKCTLCLSNRQ-----DPTATPCGHVFCWNCIMEWCNEKPECPLC 358 (375)
Q Consensus 317 ~~~~C~iC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 358 (375)
.-..|+.|...+. +.+.-.|||-|||.|..+|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 3578999877543 22222399999999999998777666554
No 123
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=69.30 E-value=3.7 Score=39.17 Aligned_cols=50 Identities=12% Similarity=-0.067 Sum_probs=38.6
Q ss_pred CCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
...+|..|.+......-.+|+|. ||..|.. ....+.||.|..... .++||
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~--~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH--TLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce--eeeec
Confidence 46799999998877778899995 9999986 456689999976554 44444
No 124
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.81 E-value=2.4 Score=44.83 Aligned_cols=49 Identities=33% Similarity=0.743 Sum_probs=37.1
Q ss_pred CCCCCccccccCCCCCCC----------eeeCCCCcc--------------------chhhHHHHHh--------cCCCC
Q 017241 314 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCN--------EKPEC 355 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~C 355 (375)
..++--.|.-|++++.+| .+|.||..| |..|-+++-. +...|
T Consensus 97 I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aC 176 (750)
T COG0068 97 IPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIAC 176 (750)
T ss_pred cCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccC
Confidence 456778999999988775 367888877 9999988764 22489
Q ss_pred CCccCCC
Q 017241 356 PLCRAPI 362 (375)
Q Consensus 356 P~Cr~~~ 362 (375)
|.|.-.+
T Consensus 177 p~CGP~~ 183 (750)
T COG0068 177 PKCGPHL 183 (750)
T ss_pred cccCCCe
Confidence 9996543
No 125
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=66.36 E-value=1.9 Score=42.45 Aligned_cols=55 Identities=29% Similarity=0.682 Sum_probs=0.0
Q ss_pred CCccccccCCCCC-----------------CC--eeeCCCCccchhhHHHHHhc---------CCCCCCccCCCC-CCCc
Q 017241 317 GVSKCTLCLSNRQ-----------------DP--TATPCGHVFCWNCIMEWCNE---------KPECPLCRAPIT-HSSL 367 (375)
Q Consensus 317 ~~~~C~iC~~~~~-----------------~p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~-~~~~ 367 (375)
....|++|...-. .| ...||||+.-.....-|.+. +..||.|-.++. ....
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 3789999986411 12 24599999777777778751 248999999886 3445
Q ss_pred eecc
Q 017241 368 VCLY 371 (375)
Q Consensus 368 ~~l~ 371 (375)
+.|+
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5554
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.29 E-value=4.8 Score=38.77 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=36.6
Q ss_pred CCccccccCCCCC--CCee--eCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQ--DPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
....|++|.+... +-.. .+||+..|+.|+...+.....||.||++..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 3468999999663 2223 468999999999998888899999997653
No 127
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.83 E-value=8.9 Score=41.07 Aligned_cols=46 Identities=11% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCccccccCCCCCCCe-------eeCCCCccchhhHHHHHhc------CCCCCCccCCC
Q 017241 317 GVSKCTLCLSNRQDPT-------ATPCGHVFCWNCIMEWCNE------KPECPLCRAPI 362 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~-------~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~ 362 (375)
+...|.+|...+.+|+ .-.|+|.+|..||..|... +-.|+.|..-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3455555555544421 2249999999999999752 23677775533
No 128
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=62.66 E-value=26 Score=30.37 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=19.7
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHH
Q 017241 91 LPPTPARRALFIVYQTAVPYIAERIS 116 (375)
Q Consensus 91 ~~ps~~rR~l~vll~~~~pyl~~rl~ 116 (375)
.-||++--++|++..+.+|||..|+.
T Consensus 132 ~~~s~~PlllF~~~v~G~PyLi~Kli 157 (158)
T PF04088_consen 132 PKPSSKPLLLFLAAVFGLPYLIWKLI 157 (158)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 34555555788888889999999975
No 129
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.00 E-value=28 Score=29.67 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCCCCCCchh--hhhhhhhHHHHHHH-------------HHHHHHHHHHhcchhH-----HHhcHHHHHHHHHHHHHHHh
Q 017241 8 RFPPAAQPEI--MRAAEKDEQYASFI-------------YDACRDAFRQLFGTRV-----AVAYQSETKLVGQMLYYVLT 67 (375)
Q Consensus 8 ~fp~A~~p~I--vRa~QkD~~~~~~L-------------~~~l~~~~~~l~g~r~-----~~~~~~Ei~~~~~llY~~lT 67 (375)
-=|.|-+|+- .|+.-||||+...+ -++++.+++.-.+--. -...-+.+..++++|||.+-
T Consensus 29 E~Pra~~pe~a~~Ra~fkvEEivEf~yaas~g~q~ftqav~~lH~a~dqAA~kv~~k~h~e~dL~gqvdalaDlLYfTYG 108 (180)
T COG4696 29 ERPRAPPPEEARLRAGFKVEEIVEFLYAASPGEQDFTQAVEILHQAVDQAANKVLSKGHAEQDLIGQVDALADLLYFTYG 108 (180)
T ss_pred cCCCCCChhHhHHhccchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHhhh
Confidence 3466777775 58999999998877 4444444443222111 12455678899999998654
Q ss_pred h
Q 017241 68 T 68 (375)
Q Consensus 68 t 68 (375)
.
T Consensus 109 s 109 (180)
T COG4696 109 S 109 (180)
T ss_pred h
Confidence 3
No 130
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.37 E-value=5.9 Score=35.74 Aligned_cols=44 Identities=20% Similarity=0.559 Sum_probs=35.3
Q ss_pred CccccccCCCCCCC-eeeCCCCccchhhHHHHHhcCCCCCCccCC
Q 017241 318 VSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 318 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
-..|.+|.+..... .+-+||-.++..|+..+.+....||.|+--
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 46899999976654 345677778999999999999999999543
No 131
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.16 E-value=14 Score=30.10 Aligned_cols=42 Identities=26% Similarity=0.534 Sum_probs=30.6
Q ss_pred CccccccCCCCCCCe--------------eeCCCCccchhhHHHHHhcCCCCCCcc
Q 017241 318 VSKCTLCLSNRQDPT--------------ATPCGHVFCWNCIMEWCNEKPECPLCR 359 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~--------------~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 359 (375)
...|--|+..+..+. ...|++.||.+|=.=+...-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999988765431 457999999999655555557899985
No 132
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=53.94 E-value=18 Score=25.61 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=28.1
Q ss_pred cccccCCCCCCC--eeeCCC--CccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 320 KCTLCLSNRQDP--TATPCG--HVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 320 ~C~iC~~~~~~p--~~~~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
.|-.|-..+... .+.-|. ..||..|....+ ...||-|.-.+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 455565544322 233354 369999998765 57899998776543
No 133
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=51.85 E-value=8 Score=43.73 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=33.0
Q ss_pred CCccccccCCCCCCCeeeCCCCc-----cchhhHHHHHhc---CCCCCCccCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNE---KPECPLCRAPITH 364 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~---~~~CP~Cr~~~~~ 364 (375)
..+.|+-|........|..||.. .|..|-...-.. ...||.|..++..
T Consensus 666 ~~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 666 GRRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 45899999987655667779965 488886542211 2379999877654
No 134
>PF15616 TerY-C: TerY-C metal binding domain
Probab=51.69 E-value=6.6 Score=32.91 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=31.3
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.....||-|....--.++ .||+++|+.= .....||-|.+....
T Consensus 75 ~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g-----~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 75 IGAPGCPHCGNQYAFAVC-GCGKLFCIDG-----EGEVTCPWCGNEGSF 117 (131)
T ss_pred cCCCCCCCCcChhcEEEe-cCCCEEEeCC-----CCCEECCCCCCeeee
Confidence 345799999987554444 8999999853 235799999887653
No 135
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=51.49 E-value=6.2 Score=42.61 Aligned_cols=49 Identities=31% Similarity=0.728 Sum_probs=36.5
Q ss_pred CCCCCccccccCCCCCCCe----------eeCCCCcc--------------------chhhHHHHHhc--------CCCC
Q 017241 314 AAPGVSKCTLCLSNRQDPT----------ATPCGHVF--------------------CWNCIMEWCNE--------KPEC 355 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~----------~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 355 (375)
.+.+-..|.-|+.++.+|. +|.||..| |..|..++... -..|
T Consensus 64 ippD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 64 IPADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred cCCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 4567788999998887653 67788776 99999997542 1389
Q ss_pred CCccCCC
Q 017241 356 PLCRAPI 362 (375)
Q Consensus 356 P~Cr~~~ 362 (375)
|.|.-.+
T Consensus 144 ~~Cgp~l 150 (711)
T TIGR00143 144 PRCGPQL 150 (711)
T ss_pred CCCCcEE
Confidence 9997655
No 136
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.02 E-value=15 Score=36.27 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=49.3
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.+-..|.+-+-++.+|+|+.-|.+|=..-|.+|++....=|.-.+++..+++++|-
T Consensus 38 LP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 38 LPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLK 93 (518)
T ss_pred CChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeee
Confidence 34568899999999999999999999999999999887888888888888888874
No 137
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.20 E-value=5.7 Score=37.76 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=38.9
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.+...|.+|.....-|... .|+|-||+.|...|......||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 4567899999887766655 49999999999999988888998876554
No 138
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=48.42 E-value=8.9 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.737 Sum_probs=13.1
Q ss_pred CCCCccchhhHHHHHhcCCCCCCcc
Q 017241 335 PCGHVFCWNCIMEWCNEKPECPLCR 359 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~~~~~CP~Cr 359 (375)
.|++.||.+|=.=.-..--.||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 5899999999432222335899883
No 139
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.48 E-value=1.2 Score=33.01 Aligned_cols=40 Identities=25% Similarity=0.685 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
..||.|..++.. .=||.+|..|-..+ .....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~----~~~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW----QGGHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE----ETTEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE----eCCEEECccccccc-eecccCCCcccHHH
Confidence 578888876432 12677788886532 23457888877664
No 140
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.09 E-value=3.6 Score=23.53 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=3.1
Q ss_pred CCCCccC
Q 017241 354 ECPLCRA 360 (375)
Q Consensus 354 ~CP~Cr~ 360 (375)
-||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 141
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.04 E-value=7.7 Score=32.41 Aligned_cols=30 Identities=30% Similarity=0.793 Sum_probs=20.5
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHH
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~ 349 (375)
.++..|.||... ..+-.|||. |.+|-...+
T Consensus 63 ~ddatC~IC~KT---KFADG~GH~-C~YCq~r~C 92 (169)
T KOG3799|consen 63 GDDATCGICHKT---KFADGCGHN-CSYCQTRFC 92 (169)
T ss_pred CcCcchhhhhhc---ccccccCcc-cchhhhhHH
Confidence 456799999874 234579995 677765544
No 142
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.64 E-value=12 Score=34.88 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=32.9
Q ss_pred CCCccccccCCCCCCCe----eeCCC-----CccchhhHHHHHhcC--------CCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPT----ATPCG-----HVFCWNCIMEWCNEK--------PECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~----~~~Cg-----H~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 363 (375)
+.+..|-||...-.+.. .-||. |=.+..|+..|+.++ ..||.|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45789999998655432 22554 336789999999643 27999977543
No 144
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.59 E-value=1.6 Score=42.81 Aligned_cols=47 Identities=23% Similarity=0.633 Sum_probs=38.9
Q ss_pred CccccccCCCCCC----CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
...|+||.+.++. -..+.|||.+...|+..|+.....||.|+..+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 4578999887654 3457899999999999999888899999887764
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=44.78 E-value=15 Score=35.34 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=28.7
Q ss_pred CCccccccCCCCCCC---eeeCCCCccchhhHHHHHhcCCCCCCcc
Q 017241 317 GVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCR 359 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 359 (375)
....|-.|.+..... .+-.|.++||.+|=.-.-..-..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 344588886655432 3457999999999543333446899996
No 146
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=44.08 E-value=17 Score=29.26 Aligned_cols=25 Identities=32% Similarity=0.724 Sum_probs=18.3
Q ss_pred CCccchhhHHHHHhc---------CCCCCCccCC
Q 017241 337 GHVFCWNCIMEWCNE---------KPECPLCRAP 361 (375)
Q Consensus 337 gH~fC~~Ci~~~~~~---------~~~CP~Cr~~ 361 (375)
.-.||..||..+..+ ...||.|+.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999776532 2479999763
No 147
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.57 E-value=13 Score=27.08 Aligned_cols=12 Identities=42% Similarity=1.262 Sum_probs=8.7
Q ss_pred ccchhhHHHHHh
Q 017241 339 VFCWNCIMEWCN 350 (375)
Q Consensus 339 ~fC~~Ci~~~~~ 350 (375)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 148
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=42.50 E-value=29 Score=24.41 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=23.1
Q ss_pred CccccccCCCCC--CCe--eeCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQ--DPT--ATPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~--~p~--~~~CgH~fC~~Ci~~ 347 (375)
...|++|.+.+. +.+ ...||-.+++.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 568999999984 333 346999999999753
No 149
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.44 E-value=17 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=21.9
Q ss_pred CCccchhhHHHHHhcCCCCCCccCCCCCCCcee
Q 017241 337 GHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 369 (375)
Q Consensus 337 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 369 (375)
.|.||.+|....+ +..||-|.-.+....++|
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 3679999987544 468999987765554444
No 150
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=41.14 E-value=18 Score=28.32 Aligned_cols=37 Identities=32% Similarity=0.847 Sum_probs=28.8
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
...|.+|......+ ||.||-.|.. .+..|..|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc----ccCcccccCCeec
Confidence 56899998876543 7889999963 4568999998774
No 151
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=41.07 E-value=20 Score=24.85 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=22.2
Q ss_pred ccccccCCCCCC----CeeeCCCCccchhhHHHHH
Q 017241 319 SKCTLCLSNRQD----PTATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 319 ~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~ 349 (375)
..|..|...+.. .....||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888775542 3456799999999986543
No 152
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=40.96 E-value=9 Score=41.55 Aligned_cols=46 Identities=30% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCc-----cchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
...+.|+-|...-....|..||-. +|..|-... ....||.|.....
T Consensus 653 i~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~--~~~~C~~C~~~~~ 703 (900)
T PF03833_consen 653 IGRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEV--EEDECPKCGRETT 703 (900)
T ss_dssp -----------------------------------------------------
T ss_pred eecccCcccCCcchhhcCcccCCccccceecccccccc--CccccccccccCc
Confidence 457899999987666677779844 799997643 2348999987654
No 153
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=40.52 E-value=28 Score=21.43 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=20.3
Q ss_pred cccccCCCCCCC--eeeCCCCccchhhHHHHHhcCCCCCCccCCC
Q 017241 320 KCTLCLSNRQDP--TATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362 (375)
Q Consensus 320 ~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 362 (375)
.|..|.+.+... ....=+..|+..| +.|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 377787766553 2223345566655 4677776655
No 154
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.65 E-value=34 Score=38.44 Aligned_cols=46 Identities=22% Similarity=0.577 Sum_probs=32.1
Q ss_pred CccccccCCCCCC-----C--eeeCCCCccchhhHHH-HHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-----P--TATPCGHVFCWNCIME-WCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 363 (375)
...|.||.+..-. + .+-.||-..|..|.+- .-..+..||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4589999997542 2 2335888899999832 2235579999987665
No 155
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=39.59 E-value=7.5 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.606 Sum_probs=16.3
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
+...|.+|...+.- -..-.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 35789999998742 13457999999999754
No 156
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.55 E-value=9.8 Score=37.65 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCccccccCCCCCC-------------C-eeeCCCCccchhhHHHHHh---cCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD-------------P-TATPCGHVFCWNCIMEWCN---EKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~-------------p-~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 363 (375)
...+|++=+..+.- | +-+.|||++.+.=...-.. ....||+|+..-+
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 45678876554332 2 3468999987753221111 2468999987543
No 157
>PLN02189 cellulose synthase
Probab=38.91 E-value=26 Score=39.17 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCccccccCCCCCC-----C--eeeCCCCccchhhHHHHH-hcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 363 (375)
....|.||.+.+-. + .+-.|+-..|..|.+-=- ..+..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999997542 2 223477789999984322 35579999988765
No 158
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.95 E-value=11 Score=22.32 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.4
Q ss_pred cccccCCCC
Q 017241 320 KCTLCLSNR 328 (375)
Q Consensus 320 ~C~iC~~~~ 328 (375)
.||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555443
No 159
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=37.22 E-value=21 Score=33.73 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=31.8
Q ss_pred CCccccccCCCCCCCeee----CCC--CccchhhHHHHHhcCCCCCCccCC
Q 017241 317 GVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
...-||+|.+.+...+.. .-| ..-|.-|...|...+.+|-.|...
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc
Confidence 346899999977654332 123 345999999999877888888653
No 160
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.45 E-value=14 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.617 Sum_probs=18.2
Q ss_pred CCCccccccCCCCCCC---eeeCCCCccc
Q 017241 316 PGVSKCTLCLSNRQDP---TATPCGHVFC 341 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p---~~~~CgH~fC 341 (375)
.+.-+|.||+|++... ..+||-.+|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEee
Confidence 4577899999987642 3468866554
No 161
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=35.39 E-value=26 Score=33.40 Aligned_cols=47 Identities=17% Similarity=0.626 Sum_probs=34.6
Q ss_pred CccccccCCCCCC----CeeeCCCC-----ccchhhHHHHHh--cCCCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQD----PTATPCGH-----VFCWNCIMEWCN--EKPECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 364 (375)
...|-||...... +...||.. ..+..|+..|.. .+..|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999885532 45677643 358999999997 66799999776543
No 162
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=35.38 E-value=8 Score=27.35 Aligned_cols=15 Identities=40% Similarity=1.380 Sum_probs=12.7
Q ss_pred CCCCccchhhHHHHH
Q 017241 335 PCGHVFCWNCIMEWC 349 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~ 349 (375)
.||+.||+.|..+|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 689999999987774
No 163
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=34.49 E-value=25 Score=32.10 Aligned_cols=24 Identities=33% Similarity=0.854 Sum_probs=19.5
Q ss_pred cchhhHHHHHhcCCCCCCccCCCC
Q 017241 340 FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 340 fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.|..|.....++.+.||+|.....
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 578888888888999999976543
No 164
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.68 E-value=8.5 Score=22.56 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=3.6
Q ss_pred CCCCCccC
Q 017241 353 PECPLCRA 360 (375)
Q Consensus 353 ~~CP~Cr~ 360 (375)
.-||.|..
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 34444443
No 165
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=33.20 E-value=27 Score=37.62 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=23.7
Q ss_pred ccccccCCCCC---------CCeeeCCCCccchhhHHHH
Q 017241 319 SKCTLCLSNRQ---------DPTATPCGHVFCWNCIMEW 348 (375)
Q Consensus 319 ~~C~iC~~~~~---------~p~~~~CgH~fC~~Ci~~~ 348 (375)
..|..|...+. .-.+-.||.+||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 57999999884 2346789999999998654
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.60 E-value=32 Score=31.80 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=19.8
Q ss_pred cchhhHHHHHhcCCCCCCccCCCC
Q 017241 340 FCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 340 fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
-|..|-....++.+.||+|.....
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 478888888889999999977654
No 167
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=32.00 E-value=22 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.502 Sum_probs=30.9
Q ss_pred CCCccccccCC-CCCC----CeeeCCCCccchhhHHHHHh-----cC--CCCCCccCCC
Q 017241 316 PGVSKCTLCLS-NRQD----PTATPCGHVFCWNCIMEWCN-----EK--PECPLCRAPI 362 (375)
Q Consensus 316 ~~~~~C~iC~~-~~~~----p~~~~CgH~fC~~Ci~~~~~-----~~--~~CP~Cr~~~ 362 (375)
.+...|.+|.. .+.. -.+-.||++||..|-..... .+ ..|+.|-..+
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 35789999998 4431 24568999999999755221 11 2788884444
No 168
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=31.60 E-value=10 Score=31.98 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCCCCCCchhhhhhhh-hH---HHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHHhhcCCCCCccccccce
Q 017241 7 RRFPPAAQPEIMRAAEK-DE---QYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDI 82 (375)
Q Consensus 7 ~~fp~A~~p~IvRa~Qk-D~---~~~~~L~~~l~~~~~~l~g~r~~~~~~~Ei~~~~~llY~~lTt~~g~qTlGEEy~~l 82 (375)
++|-+.+.++|++.+.. .. .+.....+++..+++.+...+....=..|+..+++.+-.-.|.|...+....+-.
T Consensus 38 YRF~~~dl~~Ll~~~p~L~~~~~~~~~~~~~~~~~l~~~l~~~g~l~~~~~~~~~La~~i~lv~t~Wl~~~~~~~~~~-- 115 (146)
T PF13972_consen 38 YRFFYRDLPDLLRRDPELKKRYRQLQQRRREQLRQLLQSLIEAGILRIDDEELQALADNIWLVSTFWLSFLETQHPRD-- 115 (146)
T ss_dssp THHHHHSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB---GHHHHHHHHHHHHHHHCHHHHHHHHSS----
T ss_pred hhhHHccHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHhCccc--
Confidence 34555666777754432 22 2445667788888888888888888899999999999999988876543221110
Q ss_pred EEecCCCCCCCchhHHHHHHHHHhhHHHHHHHHHH
Q 017241 83 TQVVGPQRLPPTPARRALFIVYQTAVPYIAERISS 117 (375)
Q Consensus 83 ~~v~~~~~~~ps~~rR~l~vll~~~~pyl~~rl~~ 117 (375)
........+.+.-++..+.||+..+-..
T Consensus 116 -------~~~~~~~~~gv~qv~~L~~PyLt~~~~~ 143 (146)
T PF13972_consen 116 -------KLTEEDIRRGVYQVLSLLRPYLTPEGRE 143 (146)
T ss_dssp ----------HHCHHHHHHHHHHHHHCCB-HHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 0122345678888999999999887654
No 169
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=31.56 E-value=17 Score=34.90 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=34.0
Q ss_pred CCCccccccCCCCCCCeeeCCCC-ccchhhHHHHHh-cCCCCCCccCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGH-VFCWNCIMEWCN-EKPECPLCRAPI 362 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH-~fC~~Ci~~~~~-~~~~CP~Cr~~~ 362 (375)
.....|.+|.+.-......+|+| +||-.|....+. ....|++|..-+
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~ 182 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAV 182 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhh
Confidence 34678899988655556678998 699999877654 445699995543
No 170
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.12 E-value=28 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=12.5
Q ss_pred CccccccCCCCCCC-eeeCCCCccchhhH
Q 017241 318 VSKCTLCLSNRQDP-TATPCGHVFCWNCI 345 (375)
Q Consensus 318 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci 345 (375)
-+.|..|...+... ....=|.++|..|.
T Consensus 26 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~ 54 (58)
T PF00412_consen 26 CFKCSKCGKPLNDGDFYEKDGKPYCKDCY 54 (58)
T ss_dssp TSBETTTTCBTTTSSEEEETTEEEEHHHH
T ss_pred ccccCCCCCccCCCeeEeECCEEECHHHH
Confidence 44555555544433 22333444555544
No 171
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=30.71 E-value=17 Score=39.32 Aligned_cols=48 Identities=17% Similarity=0.436 Sum_probs=34.1
Q ss_pred CCCccccccCCCCCC--CeeeCCCCccchhhHHHHH----h--cCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQD--PTATPCGHVFCWNCIMEWC----N--EKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~~----~--~~~~CP~Cr~~~~ 363 (375)
.....|-.|.....+ -++..||+.+|..|+..|. . ....|+.|+..+.
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 345689999887665 4677899999999999994 1 1235666655444
No 172
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=30.38 E-value=33 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=17.2
Q ss_pred cccccCCCCCCCeeeCCCCccchhh
Q 017241 320 KCTLCLSNRQDPTATPCGHVFCWNC 344 (375)
Q Consensus 320 ~C~iC~~~~~~p~~~~CgH~fC~~C 344 (375)
+|..|......-+.+.|+|++|...
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 4777776544446778999998543
No 173
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.72 E-value=17 Score=33.14 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCccccccCCCCCCCeeeCC-C------Cccchhh--HHHHHhcCCCCCCccCCCCCCCce
Q 017241 317 GVSKCTLCLSNRQDPTATPC-G------HVFCWNC--IMEWCNEKPECPLCRAPITHSSLV 368 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~C-g------H~fC~~C--i~~~~~~~~~CP~Cr~~~~~~~~~ 368 (375)
....||+|...+......+- + --||..- +.+..-.-.+||.|.....+++.-
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~ 64 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFE 64 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccc
Confidence 35799999998875432211 0 1122211 111112234899999888766543
No 174
>PLN02436 cellulose synthase A
Probab=29.63 E-value=47 Score=37.30 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=32.2
Q ss_pred CccccccCCCCCC-----C--eeeCCCCccchhhHHHHH-hcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 363 (375)
...|.||.+.+-. + .+-.|+-..|..|.+-=. ..+..||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999997632 2 223588789999984322 35579999988765
No 175
>PF14353 CpXC: CpXC protein
Probab=29.35 E-value=45 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=21.9
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhc---CCCCCCccCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE---KPECPLCRAPIT 363 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 363 (375)
..||.|...+.-.+-+.-.-..=..-....+.. ...||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 468888776553322211111111222222322 248999988765
No 176
>PLN02195 cellulose synthase A
Probab=28.87 E-value=53 Score=36.55 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=32.3
Q ss_pred CccccccCCCCC-----CC--eeeCCCCccchhhHHHH-HhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQ-----DP--TATPCGHVFCWNCIMEW-CNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~-----~p--~~~~CgH~fC~~Ci~~~-~~~~~~CP~Cr~~~~ 363 (375)
...|.||.+..- +| .+-.|+-..|..|.+-= -..+..||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 348999998653 22 23468888999998322 235579999988776
No 177
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=28.56 E-value=20 Score=37.62 Aligned_cols=23 Identities=35% Similarity=0.899 Sum_probs=17.8
Q ss_pred eeCCCCccchhhHHHHHhcCCCCCCc
Q 017241 333 ATPCGHVFCWNCIMEWCNEKPECPLC 358 (375)
Q Consensus 333 ~~~CgH~fC~~Ci~~~~~~~~~CP~C 358 (375)
+..||++|+..|+.. ..+.||.|
T Consensus 534 C~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHHHhc---cCCCCCch
Confidence 457999999999753 34459999
No 178
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=41 Score=35.19 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=35.8
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
.......|.+|.+.+ ....++|.| .-|+..|...+..||+|......++
T Consensus 475 l~~~~~~~~~~~~~~-~~~~~~~~~---~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM-SARITPCSH---ALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhcccCcchHHHHHH-Hhccccccc---hhHHHhhhhhccccCCCchhhhccc
Confidence 344567899999887 455567774 5677778888889999988765443
No 179
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.65 E-value=30 Score=28.80 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=15.6
Q ss_pred cccCCCCCCCeeeCCCCccchhh
Q 017241 322 TLCLSNRQDPTATPCGHVFCWNC 344 (375)
Q Consensus 322 ~iC~~~~~~p~~~~CgH~fC~~C 344 (375)
-||.+.-..-+...|||.||.+=
T Consensus 61 fi~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred EEEecccccEEEEeccccccChh
Confidence 35666544445568999999753
No 180
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.21 E-value=31 Score=34.40 Aligned_cols=34 Identities=26% Similarity=0.670 Sum_probs=25.9
Q ss_pred CCCccccccCCCCCC------CeeeCCCCccchhhHHHHH
Q 017241 316 PGVSKCTLCLSNRQD------PTATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~------p~~~~CgH~fC~~Ci~~~~ 349 (375)
.....||-|.-.+.. -.++.|||.|||-|-...-
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 356789999877653 2578899999999986644
No 181
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.19 E-value=18 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=14.8
Q ss_pred eeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 333 ATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 333 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
+..|||.|-...-..- .....||.|+.
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 3457776644321111 23468999977
No 182
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.93 E-value=43 Score=20.71 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=7.6
Q ss_pred cCCCCCCccCC
Q 017241 351 EKPECPLCRAP 361 (375)
Q Consensus 351 ~~~~CP~Cr~~ 361 (375)
....||.|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34589999663
No 183
>PLN02400 cellulose synthase
Probab=26.78 E-value=36 Score=38.25 Aligned_cols=46 Identities=17% Similarity=0.450 Sum_probs=31.9
Q ss_pred CccccccCCCCCC-----C--eeeCCCCccchhhHHH-HHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-----P--TATPCGHVFCWNCIME-WCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 363 (375)
.-.|.||.+..-. + .+-.|+-..|..|.+- .-..+..||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4589999997542 2 2346888899999832 1234579999987665
No 184
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.73 E-value=21 Score=24.74 Aligned_cols=11 Identities=45% Similarity=1.235 Sum_probs=5.5
Q ss_pred CCCCccCCCCC
Q 017241 354 ECPLCRAPITH 364 (375)
Q Consensus 354 ~CP~Cr~~~~~ 364 (375)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 78888887764
No 185
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.48 E-value=29 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCccccccCCCCC---C--CeeeCCCCccchhhHHHHHh-cCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCIMEWCN-EKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~ 360 (375)
++..|.+|...+. + ..+..|+|.+|..|-..-.. ....|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 4579999988653 2 24567999999988643100 1125666643
No 186
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.20 E-value=37 Score=31.73 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=34.3
Q ss_pred CCccccccCCCCCCCee-eCCCCccchhhHHHHHhc--CCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNE--KPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 360 (375)
-++.||+-..++.+|+. ..|||+|=.+-|...+.. .-.||.-..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 36789998788888875 579999999999888765 457887433
No 187
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=25.95 E-value=33 Score=26.87 Aligned_cols=10 Identities=50% Similarity=1.185 Sum_probs=5.0
Q ss_pred CCCCccCCCC
Q 017241 354 ECPLCRAPIT 363 (375)
Q Consensus 354 ~CP~Cr~~~~ 363 (375)
.|..|++++.
T Consensus 60 rCr~C~~~I~ 69 (92)
T PF06750_consen 60 RCRYCGAPIP 69 (92)
T ss_pred CCcccCCCCC
Confidence 4555554443
No 188
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=25.82 E-value=52 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.717 Sum_probs=16.4
Q ss_pred CCCCeeeCCC----CccchhhHHHHHh
Q 017241 328 RQDPTATPCG----HVFCWNCIMEWCN 350 (375)
Q Consensus 328 ~~~p~~~~Cg----H~fC~~Ci~~~~~ 350 (375)
+..|....|. |+||+.++..|+.
T Consensus 151 f~~p~~~~C~~gHfHHyCs~HV~~WL~ 177 (199)
T PF12132_consen 151 FVKPSVDECEYGHFHHYCSQHVNSWLN 177 (199)
T ss_pred ccCCCCCCCCCCCcChhhHHHHHHHHH
Confidence 3345555564 6799999999986
No 189
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=1.9e+02 Score=22.34 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=33.2
Q ss_pred Cchhhhhhh--------hhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHH
Q 017241 14 QPEIMRAAE--------KDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63 (375)
Q Consensus 14 ~p~IvRa~Q--------kD~~~~~~L~~~l~~~~~~l~g~r~~~~~~~Ei~~~~~llY 63 (375)
-||||+-+- .|++|...|.+++.+-+.-+. -.++..|+..+++++-
T Consensus 12 IpEII~nsgr~~~~h~a~d~ey~~~Le~KL~EE~~E~l----edk~lEeLadllEvi~ 65 (95)
T COG4997 12 IPEIILNSGRIPVTHIAEDEEYKELLENKLLEEVEEFL----EDKNLEELADLLEVIS 65 (95)
T ss_pred hHHHHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHH
Confidence 477776543 389999999999888776554 4577778777777654
No 190
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=25.33 E-value=38 Score=24.28 Aligned_cols=16 Identities=31% Similarity=0.845 Sum_probs=11.0
Q ss_pred CCCCCCccCCCCCCCc
Q 017241 352 KPECPLCRAPITHSSL 367 (375)
Q Consensus 352 ~~~CP~Cr~~~~~~~~ 367 (375)
+..||.|++++++++.
T Consensus 3 HkHC~~CG~~Ip~~~~ 18 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDES 18 (59)
T ss_pred CCcCCcCCCcCCcchh
Confidence 4678888887776543
No 191
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.29 E-value=25 Score=20.64 Aligned_cols=10 Identities=30% Similarity=1.099 Sum_probs=6.9
Q ss_pred CCCCccCCCC
Q 017241 354 ECPLCRAPIT 363 (375)
Q Consensus 354 ~CP~Cr~~~~ 363 (375)
.||.|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 5788877664
No 192
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=25.27 E-value=69 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=19.1
Q ss_pred CccccccCCCCCC-----C--eeeCCCCccchhhHHHHHh-cCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWCN-EKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 363 (375)
.-.|.||.+..-. + .+..|+-..|..|..--.+ ....||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4589999886531 2 2335888889999864443 5579999987654
No 193
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=24.57 E-value=49 Score=35.39 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=33.6
Q ss_pred CCccccccCCCCCCCee-eCCCCccchhhHHHHHhc----CCCCCCccCCCCCCCc
Q 017241 317 GVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNE----KPECPLCRAPITHSSL 367 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 367 (375)
-...|+++...+.-|.. ..|+|.-|-+-..-...+ ...||+|.+...-+.+
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 46899999887776644 568887776654322221 2489999887765544
No 194
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.52 E-value=96 Score=34.89 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCccccccCCCCCC-----C--eeeCCCCccchhhHHHHH-hcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 363 (375)
....|.||.+..-. | .+-.|+-..|..|.+-=. ..+..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45689999987542 2 233588889999984322 35579999987665
No 195
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.28 E-value=1.7e+02 Score=25.95 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.0
Q ss_pred CCCCCCchhhhhhhhhH----------HHHHHHHHHHH-HHHHHhcchhHHHhcHHHHHH---------HHHHHHHHHhh
Q 017241 9 FPPAAQPEIMRAAEKDE----------QYASFIYDACR-DAFRQLFGTRVAVAYQSETKL---------VGQMLYYVLTT 68 (375)
Q Consensus 9 fp~A~~p~IvRa~QkD~----------~~~~~L~~~l~-~~~~~l~g~r~~~~~~~Ei~~---------~~~llY~~lTt 68 (375)
||..-..=+.-++||-. +....|..-.. ..++...|.| +.+|+.-..- ..++...++-.
T Consensus 27 YPLtlN~l~~AcNQKT~RdPVmnLse~eVq~~l~~L~~r~lvr~~sgsR-v~kyehrfcnsefgdlkl~~~evali~lLl 105 (215)
T COG3132 27 YPLTLNGLVTACNQKTNRDPVMNLSESEVQEQLDNLEKRHLVRTVSGSR-VTKYEHRFCNSEFGDLKLSAAEVALITLLL 105 (215)
T ss_pred ccchHHHHHHHHhccccccchhcCCHHHHHHHHHHHHHhhhHHHhhcch-HHHHHHHHhhccccceeechHHHHHHHHHH
Confidence 45544445566777741 22223322221 2355667777 6678765544 56677778888
Q ss_pred cCCCCCcccc
Q 017241 69 GSGQQTLGEE 78 (375)
Q Consensus 69 ~~g~qTlGEE 78 (375)
++|-||+||=
T Consensus 106 LRGaQTpgEL 115 (215)
T COG3132 106 LRGAQTPGEL 115 (215)
T ss_pred HcCCCChhHH
Confidence 9999999993
No 196
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=28 Score=35.36 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=13.4
Q ss_pred CCeeeCCCCccchhhHHHH
Q 017241 330 DPTATPCGHVFCWNCIMEW 348 (375)
Q Consensus 330 ~p~~~~CgH~fC~~Ci~~~ 348 (375)
.++.-+|||.||+.|..+|
T Consensus 178 ~~v~C~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEES 196 (444)
T ss_pred cceeCCCCchhHhhccccc
Confidence 3455578888888887654
No 197
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.39 E-value=55 Score=29.47 Aligned_cols=38 Identities=32% Similarity=0.659 Sum_probs=26.0
Q ss_pred CccccccCCC-CCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccC
Q 017241 318 VSKCTLCLSN-RQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRA 360 (375)
Q Consensus 318 ~~~C~iC~~~-~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 360 (375)
.+.|-+|.+. +.=| .+..|+.+|+..|.. +..||.|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4788899863 2112 233699999999975 267999943
No 198
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.31 E-value=35 Score=26.60 Aligned_cols=13 Identities=46% Similarity=1.250 Sum_probs=10.4
Q ss_pred ccchhhHHHHHhc
Q 017241 339 VFCWNCIMEWCNE 351 (375)
Q Consensus 339 ~fC~~Ci~~~~~~ 351 (375)
.||..|+..|.++
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999863
No 199
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.82 E-value=34 Score=33.62 Aligned_cols=31 Identities=32% Similarity=0.843 Sum_probs=24.4
Q ss_pred CCCccccccC-CCCCCCeeeCCCCccchhhHH
Q 017241 316 PGVSKCTLCL-SNRQDPTATPCGHVFCWNCIM 346 (375)
Q Consensus 316 ~~~~~C~iC~-~~~~~p~~~~CgH~fC~~Ci~ 346 (375)
.....|-=|. .....-..+|||..||..|+.
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 4567899888 445556778999999999984
No 200
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=22.53 E-value=49 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.648 Sum_probs=22.0
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIM 346 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 346 (375)
+...|..|.-++.. -.+..||.+||-.|-.
T Consensus 900 ~a~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred cchhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 45678888776542 3567899999999963
No 201
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.22 E-value=29 Score=33.70 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=10.3
Q ss_pred CCCccccccCCCCC
Q 017241 316 PGVSKCTLCLSNRQ 329 (375)
Q Consensus 316 ~~~~~C~iC~~~~~ 329 (375)
..+..|++|.+...
T Consensus 13 dl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccCccc
Confidence 34568999998754
No 202
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=22.08 E-value=31 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.651 Sum_probs=21.7
Q ss_pred CCCccccccCCCCCCCeeeCCCCccch-hhHH
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCW-NCIM 346 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~-~Ci~ 346 (375)
+.-..|+||. ....-.++.||..||. .|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~ 146 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLK 146 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhh
Confidence 3457899998 5555678999998764 4554
No 203
>PLN02248 cellulose synthase-like protein
Probab=21.66 E-value=65 Score=36.42 Aligned_cols=32 Identities=25% Similarity=0.758 Sum_probs=26.7
Q ss_pred CCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 335 PCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
.|++..|++|....++....||-|+++....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 47778899999999988899999998875433
No 204
>PF12773 DZR: Double zinc ribbon
Probab=20.73 E-value=82 Score=21.08 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=7.4
Q ss_pred CCCCCccCCCCC
Q 017241 353 PECPLCRAPITH 364 (375)
Q Consensus 353 ~~CP~Cr~~~~~ 364 (375)
..||.|...+..
T Consensus 30 ~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 30 KICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCCcC
Confidence 467777666543
No 205
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=20.17 E-value=1.3e+02 Score=27.15 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=10.3
Q ss_pred CCCCCCccCCCCCC
Q 017241 352 KPECPLCRAPITHS 365 (375)
Q Consensus 352 ~~~CP~Cr~~~~~~ 365 (375)
.+.||.|+..+.+.
T Consensus 133 ~p~C~~Cg~~lrP~ 146 (218)
T cd01407 133 VPRCPKCGGLLRPD 146 (218)
T ss_pred CCcCCCCCCccCCC
Confidence 47899998776543
No 206
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.16 E-value=52 Score=33.94 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=7.6
Q ss_pred CCccccccCCCCC
Q 017241 317 GVSKCTLCLSNRQ 329 (375)
Q Consensus 317 ~~~~C~iC~~~~~ 329 (375)
+..-|+-|++.+.
T Consensus 25 ~~~yCp~CL~~~p 37 (483)
T PF05502_consen 25 DSYYCPNCLFEVP 37 (483)
T ss_pred ceeECccccccCC
Confidence 3556666666554
Done!